Aliarcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Aliarcobacter.
Complete genome sequences of Arcobacter cryaerophilus strains ATCC 43158 and ATCC 49615
Submitted (05-OCT-2018) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP032824.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 1198x\nSequencing Technology :: PacBio; Illumina HiSeq; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 23:29:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,157\nCDSs (total) :: 2,091\nGenes (coding) :: 2,090\nCDSs (with protein) :: 2,090\nGenes (RNA) :: 66\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 1\nCDSs (without protein) :: 1\nPseudo Genes (ambiguous residues) :: 0 of 1\nPseudo Genes (frameshifted) :: 0 of 1\nPseudo Genes (incomplete) :: 0 of 1\nPseudo Genes (internal stop) :: 1 of 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
United Kingdom: Belfast, Northern Ireland
COORDINATES: similar to AA sequence:RefSeq:WP_004509363.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
exonuclease SbcCD subunit D C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF018242.2
Qat anti-phage system QueC-like protein QatC
COORDINATES: protein motif:HMM:NF013213.2
COORDINATES: similar to AA sequence:RefSeq:WP_014473600.1
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: similar to AA sequence:RefSeq:WP_014468686.1
GO:0008832 - dGTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006203 - dGTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF019315.2
7TM diverse intracellular signaling domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012013073.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612215.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011980472.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019430.2
GO:0042597 - periplasmic space [Evidence IEA]
Spy/CpxP family protein refolding chaperone
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: similar to AA sequence:RefSeq:WP_008335272.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017263972.1
GO:0046872 - metal ion binding [Evidence IEA]
SEC-C metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:NP_415657.1
phage exclusion protein Lit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016401786.1
COORDINATES: similar to AA sequence:RefSeq:WP_019281379.1
COORDINATES: protein motif:HMM:NF013882.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008339867.1
COORDINATES: similar to AA sequence:RefSeq:WP_015168031.1
COORDINATES: protein motif:HMM:NF025356.2
diguanylate cyclase regulator RdcB family protein
COORDINATES: protein motif:HMM:NF013862.2
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_013135301.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF019121.2
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_013836030.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024788.2
PLDc N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002778131.1
COORDINATES: protein motif:HMM:NF015999.2
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014469471.1
COORDINATES: similar to AA sequence:RefSeq:WP_011979725.1
COORDINATES: protein motif:HMM:NF012485.2
secretin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:TIGR01710.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
type II secretion system major pseudopilin GspG
COORDINATES: protein motif:HMM:NF027551.2
COORDINATES: protein motif:HMM:NF019335.2
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF016488.2