Campylobacter volucris strain LMG 24380 plasmid p9726, complete sequence.
type: Entry
definition: Campylobacter volucris strain LMG 24380 plasmid p9726, complete sequence.
sequence version: NZ_CP043429.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP043429.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12636418
keyword: RefSeq
source: Campylobacter volucris
organism: Campylobacter volucris
taxonomy: Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP043429.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS_HGAP_Assembly v. 3; Newbler v. 2.6\nGenome Coverage :: 946x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 03:24:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,587\nCDSs (total) :: 1,529\nGenes (coding) :: 1,507\nCDSs (with protein) :: 1,507\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 22\nCDSs (without protein) :: 22\nPseudo Genes (ambiguous residues) :: 0 of 22\nPseudo Genes (frameshifted) :: 7 of 22\nPseudo Genes (incomplete) :: 14 of 22\nPseudo Genes (internal stop) :: 1 of 22\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7145
topology: circular
so has quality: SO_0000988
location: 1..7145
location: region:1-7145:1
RO_0002162: 1031542

NZ_CP043429
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12636418
type: BioSample
SIO_000068: biosample

1
title: Complete genomes of the Campylobacter fetus subsp. venerealis, Campylobacter lari subsp. concheus, Campylobacter sputorum bv. sputorum and Campylobacter volucris type strains
author: Miller, W.G.
author: Yee, E.
journal: Unpublished

2
title: Direct Submission
author: Miller, W.G.
journal: Submitted (27-AUG-2019) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7145:1
position: 7145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7145:1:source
so part of: sequence
organism: Campylobacter volucris
mol type: genomic DNA
strain: LMG 24380
isolation source: Black-headed gull
culture collection: LMG:24380
type material: type strain of Campylobacter volucris
plasmid: p9726
country: Sweden
collection date: 1999

1031542
type: Taxonomy
SIO_000068: taxonomy

CVOLT_RS08090
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
gene: mobC
locus tag: CVOLT_RS08090
old locus tag: CVOLT_a0001
so part of: sequence
location: 1..198
location: region:1-198:1
so has part: feature:1-198:1:exon
subclass of: SO_0000010

66288270
type: Gene
SIO_000068: ncbigene

position:198:1
position: 198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-198:1:exon

CVOLT_RS08090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
gene: mobC
locus tag: CVOLT_RS08090
old locus tag: CVOLT_a0001
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MLNKNTKKKKNKIDQDFILELAKWGNNLNQVAKHLNAKKGGIDRVALEMLSKIENHLKELRETIK
SIO_010081: CVOLT_RS08090
subclass of: SO_0000673
so part of: CVOLT_RS08090
location: 1..198
location: region:1-198:1
so has part: feature:1-198:1:exon

WP_147538970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-198:1:exon

CVOLT_RS07870
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
locus tag: CVOLT_RS07870
old locus tag: CVOLT_a0002
so part of: sequence
location: 195..1703
location: region:195-1703:1
so has part: feature:195-1703:1:exon
subclass of: SO_0000010

66288271
type: Gene
SIO_000068: ncbigene

position:195:1
position: 195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1703:1
position: 1703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195-1703:1:exon

CVOLT_RS07870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
locus tag: CVOLT_RS07870
old locus tag: CVOLT_a0002
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MICKFFKTQKGGGVSSINYMLNERVNQGTARILKGDEFLTREIIKSMSQKHKTCVGCLSFEEKNIKEELKKELMESFENTLLTPAMKGNYNILWIEHTDKGRLELNFIIPKIALESKKAFNPYYHTSDSKRIDLWCDFVNLNHNFTNPKDPAKENTLQGSKKEYELIKDYEALDKLLHKQVANEIINSREELINILEQNNIEVTRQGKDYLSIKLPQSKKAKRFKGGIYNEQFTGTQELRRIREEKESRAREFKQRDIKAELGRIKPELDKLIQRKDEFYREQIRKFNKRKQLKNNAEFKQAREDNLQSRTDEIQNIKLSNELFNRNANNDDFINACVASVDKTLSDRRKLNNKITRWKSFSLDTKTTNERTRQSLLFNARLKEIKNDNIRSRINIRNREITREDNRISTSRNEITRDNQERKNSIRERFRSYEKQTQWLNTEFQGLERENERNRTLIQARFEAVRDILQSKFTELRERIRNSFKKIVNKARQIKRDFGMSR
SIO_010081: CVOLT_RS07870
subclass of: SO_0000673
so part of: CVOLT_RS07870
location: 195..1703
location: region:195-1703:1
so has part: feature:195-1703:1:exon

WP_147538971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195-1703:1:exon

CVOLT_RS07875
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
locus tag: CVOLT_RS07875
old locus tag: CVOLT_a0003
so part of: sequence
location: 1983..3053
location: region:1983-3053:1
so has part: feature:1983-3053:1:exon
subclass of: SO_0000010

66288272
type: Gene
SIO_000068: ncbigene

position:1983:1
position: 1983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3053:1
position: 3053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1983-3053:1:exon

CVOLT_RS07875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
locus tag: CVOLT_RS07875
old locus tag: CVOLT_a0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002821140.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MQATKKTNKKRIQKAVVTQNNRFVYAKYDMNTNELKMFMWIVAQINSQKDTLFQVCQMPLNQIFEVLNHQSEENYTYVKNLIDNMARKTYIEDFKLLDEKTMKEIEIHRAMPLFQFLEYKKGASNISYKLNDSLMEYLLEQKRDFTQLKFSDIQQMKSAYSIRIYNMLLCELKQNRQNLKINLSVLQNLLEVPKSLYEWFDFNRRVLKQAEKDINSKSNLVLLDIKTYKTGRKITDLEFIFDYKNNDKRIAQEKLKEENLFKKLKEILSSYIGKSIYDDRFGEMIISHYEHNEEDKKISIIAQRKSDDKFVAFGVKNFKDIKSLEKLKDKAEELFYLDKQRVLKAKEAQKYRNLFN
SIO_010081: CVOLT_RS07875
subclass of: SO_0000673
so part of: CVOLT_RS07875
location: 1983..3053
location: region:1983-3053:1
so has part: feature:1983-3053:1:exon

WP_147538972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1983-3053:1:exon

CVOLT_RS07880
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
locus tag: CVOLT_RS07880
old locus tag: CVOLT_a0004
so part of: sequence
location: 3077..3931
location: region:3077-3931:1
so has part: feature:3077-3931:1:exon
subclass of: SO_0000010

66288273
type: Gene
SIO_000068: ncbigene

position:3077:1
position: 3077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3931:1
position: 3931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3077-3931:1:exon

CVOLT_RS07880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
locus tag: CVOLT_RS07880
old locus tag: CVOLT_a0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004277983.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HmcD domain-containing protein
translation: MKKFLFMLMFLSNCVFASDELNIDSLFKKQIGLRSITTISLLSTGNPHSYYIYPNIGINGDLNVWNDTKQLYLNQTFIYTLAPKLDILISGGGSYARQEYNNIISGAFTSKNTLNFDSLWVGFIYTGDSIADFIPQIKFQTSIVQREKTVMQTKNFYFQSQNLEASLRGYSDPVVYSIYTGFGYNAERKFKIARIAYGNSIYFGGNLSIILSPKITLDLGAEQRFQTEQKINGIKNSEVRSIPTISGGSTYSINEDTAVSVSASLGGSSAAPDAIFGISLWKKF
SIO_010081: CVOLT_RS07880
subclass of: SO_0000673
so part of: CVOLT_RS07880
location: 3077..3931
location: region:3077-3931:1
so has part: feature:3077-3931:1:exon

WP_147538973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3077-3931:1:exon

CVOLT_RS07885
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
locus tag: CVOLT_RS07885
old locus tag: CVOLT_a0005
so part of: sequence
location: 3916..4512
location: region:3916-4512:1
so has part: feature:3916-4512:1:exon
subclass of: SO_0000010

66288274
type: Gene
SIO_000068: ncbigene

position:3916:1
position: 3916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4512:1
position: 4512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3916-4512:1:exon

CVOLT_RS07885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
locus tag: CVOLT_RS07885
old locus tag: CVOLT_a0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002868361.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine peptidase family C39 domain-containing protein
translation: MEKILKILLIVFIQPLFLKAEFIVKSYQEIKNEKVIRQTYEESCGASSLATLINMIDDKNFMELDLLKIMSDQELYTDMVSFADLSDAVRKLGYESNSYQINRDNLNKLINIPMLVKIENDPRFPHFVVIINYKGGYLQVFDPSYGEYISSKREFFSIWDRYNKGGYALIVAPKKELKKFKLNIPKHLFFEIEPFGIN
SIO_010081: CVOLT_RS07885
subclass of: SO_0000673
so part of: CVOLT_RS07885
location: 3916..4512
location: region:3916-4512:1
so has part: feature:3916-4512:1:exon

WP_149104694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3916-4512:1:exon

CVOLT_RS07890
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
locus tag: CVOLT_RS07890
old locus tag: CVOLT_a0006
so part of: sequence
location: complement(4517..5824)
location: region:4517-5824:-1
so has part: feature:4517-5824:-1:exon
subclass of: SO_0000010

66288275
type: Gene
SIO_000068: ncbigene

position:4517:-1
position: 4517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5824:-1
position: 5824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4517-5824:-1:exon

CVOLT_RS07890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
locus tag: CVOLT_RS07890
old locus tag: CVOLT_a0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014516896.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIFSINDNSSYGSIISQTKANKENKTSSKTNFANTFVKQNASKLIEIQSNNTQTLALNEAILNQNSIKSDSPNYHISSDFKNSIYALKYRQANNPASMAYGYSVDSSGYMGSDFNKAAGLPEDFKIHKSTLDELYRVAENNPIIAGEKEYLGISNYYTNIDMADTIRQYYNIFSSALDQSFPNDKISFSEADINSMPKGYAIDGFYNGYGIGFQHSDTIRNNDIRIKFLADYSDVKISNVYKTSEQFNEANNIYDDSWGLITGIKPETLGLSMKDLNNINKGGEHEFKPDMSVYPKNEDGSYPKEALFMSFLKSQEGRILYSPNTTLNPKAQMHNAVRAKESFGSPSMHLDDIMTKKIDFQSLFKYYAEESFQNIHLYLYEHGISKNEAMGNSQLDFDMKKYFANGWKPQSNTINSYTNSIMDRLNNLMSQTRV
SIO_010081: CVOLT_RS07890
subclass of: SO_0000673
so part of: CVOLT_RS07890
location: complement(4517..5824)
location: region:4517-5824:-1
so has part: feature:4517-5824:-1:exon

WP_139451802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4517-5824:-1:exon

CVOLT_RS07895
type: Gene
subclass of: SO_0000704
RO_0002162: 1031542
locus tag: CVOLT_RS07895
old locus tag: CVOLT_a0007
so part of: sequence
location: complement(5923..6357)
location: region:5923-6357:-1
so has part: feature:5923-6357:-1:exon
subclass of: SO_0000010

66288276
type: Gene
SIO_000068: ncbigene

position:5923:-1
position: 5923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6357:-1
position: 6357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5923-6357:-1:exon

CVOLT_RS07895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1031542
locus tag: CVOLT_RS07895
old locus tag: CVOLT_a0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002779858.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFKNVIKFATLSILISSSAIADDFLSKISNGALSDTSIGVKTLSLNEMKDVKGGYQFSRASKYDNFRSYAYYVYNDNFGSVNSELQVDSHKTVLAKYRYVNNQKDYYLQTYDPKTNSFGTIFPNSQTSWGINAGKILNDFRKKY
SIO_010081: CVOLT_RS07895
subclass of: SO_0000673
so part of: CVOLT_RS07895
location: complement(5923..6357)
location: region:5923-6357:-1
so has part: feature:5923-6357:-1:exon

WP_147538969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5923-6357:-1:exon