Proteus penneri strain S178-2 plasmid pS178-2.1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Proteus.
Illegal smuggling Malayan pangolin as potential reservoirs for Multidrug-Resistant bacteria: An increasing public health risk
Submitted (28-JUL-2020) Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Guangdong Institute of Applied Biological Resources, Guangdong Academy of Science, Guangzhou, Guangdong province, China, microbial pathogenic ecology group, 105 Xingang West Road, Guangzhou, Guangdong 510260, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP059691.1.\nBacteria and source DNA available from Guangdong Key Laboratory of\nAnimal Conservation and Resource Utilization, Guangdong Public\nLaboratory of Wild Animal Conservation and Utilization, Guangdong\nInstitute of Applied Biological Resources, Guangdong Academy of\nScience, Guangzhou, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-DEC-2018\nAssembly Method :: Canu v. V1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 102.67x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/14/2023 10:37:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,658\nCDSs (total) :: 3,546\nGenes (coding) :: 3,502\nCDSs (with protein) :: 3,502\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 4\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 11 of 44\nPseudo Genes (incomplete) :: 35 of 44\nPseudo Genes (internal stop) :: 9 of 44\nPseudo Genes (multiple problems) :: 9 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611787.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005221001.1
COORDINATES: similar to AA sequence:RefSeq:WP_032489893.1
broad-spectrum class A beta-lactamase TEM-1
COORDINATES: similar to AA sequence:RefSeq:WP_000844102.1
COORDINATES: similar to AA sequence:RefSeq:WP_000893479.1
COORDINATES: similar to AA sequence:RefSeq:WP_001452736.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749965.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_000504251.1
COORDINATES: similar to AA sequence:RefSeq:WP_000960954.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749963.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000440698.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749962.1
COORDINATES: similar to AA sequence:RefSeq:WP_000496058.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012561149.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_001749960.1
COORDINATES: similar to AA sequence:RefSeq:WP_000734973.1
IncN-type entry exclusion lipoprotein EexN
COORDINATES: similar to AA sequence:RefSeq:WP_001749958.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216210.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220994.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:YP_005220995.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220996.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220997.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899330.1
COORDINATES: similar to AA sequence:RefSeq:WP_000884352.1
COORDINATES: similar to AA sequence:RefSeq:WP_000342687.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749975.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749974.1
COORDINATES: similar to AA sequence:RefSeq:WP_000861577.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749972.1
COORDINATES: similar to AA sequence:RefSeq:WP_000999874.1
COORDINATES: similar to AA sequence:RefSeq:WP_000211833.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214483.1
COORDINATES: similar to AA sequence:RefSeq:WP_000129958.1
COORDINATES: similar to AA sequence:RefSeq:WP_000274934.1
COORDINATES: similar to AA sequence:RefSeq:WP_000545925.1
COORDINATES: similar to AA sequence:RefSeq:WP_000932975.1
COORDINATES: similar to AA sequence:RefSeq:WP_000881514.1
antirestriction protein ArdAB regulator ArdR
COORDINATES: similar to AA sequence:RefSeq:WP_000447669.1
COORDINATES: similar to AA sequence:RefSeq:WP_107685442.1
translesion error-prone DNA polymerase V autoproteolytic subunit MucA
COORDINATES: similar to AA sequence:RefSeq:WP_032488541.1
translesion error-prone DNA polymerase V subunit MucB
COORDINATES: similar to AA sequence:RefSeq:WP_012561121.1
COORDINATES: similar to AA sequence:RefSeq:WP_000057569.1
antirestriction protein ArdAB regulator ArdK
COORDINATES: similar to AA sequence:RefSeq:WP_012561120.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
COORDINATES: similar to AA sequence:RefSeq:WP_032492277.1
fluoroquinolone efflux MFS transporter QepA
COORDINATES: similar to AA sequence:RefSeq:WP_004412521.1
GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016847.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]