Halobaculum magnesiiphilum strain NBRC 109044 plasmid unnamed3, complete sequence.
type: Entry
definition: Halobaculum magnesiiphilum strain NBRC 109044 plasmid unnamed3, complete sequence.
sequence version: NZ_CP081961.1
sequence date: 2023-07-30
sequence: sequence
division: CON
label: NZ_CP081961.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN20958642
keyword: RefSeq
source: Halobaculum magnesiiphilum
organism: Halobaculum magnesiiphilum
taxonomy: Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halobaculum.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP081961.1.\nSource bacteria available from CGMCC.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 629.64x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:22:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,793\nCDSs (total) :: 3,732\nGenes (coding) :: 3,663\nCDSs (with protein) :: 3,663\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 2\nPseudo Genes (total) :: 69\nCDSs (without protein) :: 69\nPseudo Genes (ambiguous residues) :: 0 of 69\nPseudo Genes (frameshifted) :: 22 of 69\nPseudo Genes (incomplete) :: 51 of 69\nPseudo Genes (internal stop) :: 11 of 69\nPseudo Genes (multiple problems) :: 11 of 69\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8308
topology: circular
so has quality: SO_0000988
location: 1..8308
location: region:1-8308:1
RO_0002162: 1017351

NZ_CP081961
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN20958642
type: BioSample
SIO_000068: biosample

1
title: Halobaculum rubrum sp. nov. isolated from an inland salt lak
author: Cui, H.-L.
journal: Unpublished

2
title: Direct Submission
author: Cui, H.-L.
journal: Submitted (24-AUG-2021) School of Food and Biological Engineering, Jiangsu University, No. 301 Xuefu Road, Jingkou District, Zhenjiang, Jiangsu 212013, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8308:1
position: 8308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8308:1:source
so part of: sequence
organism: Halobaculum magnesiiphilum
mol type: genomic DNA
strain: NBRC 109044
type material: type strain of Halobaculum magnesiiphilum
plasmid: unnamed3
country: China: Beijing
collection date: 2018-07-30

1017351
type: Taxonomy
SIO_000068: taxonomy

K6T50_RS18800
type: Gene
subclass of: SO_0000704
RO_0002162: 1017351
locus tag: K6T50_RS18800
old locus tag: K6T50_18800
so part of: sequence
location: join(7612..8308,1..806)
location: region:1-8308:1
so has part: feature:7612-8308:1:exon
so has part: feature:1-806:1:exon
subclass of: SO_0000010

67180236
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:7612-8308:1:exon

position:7612:1
position: 7612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-806:1:exon

position:806:1
position: 806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

K6T50_RS18800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1017351
locus tag: K6T50_RS18800
old locus tag: K6T50_18800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYTDGTALDPVGDADAVVPLVLAGVALAGAAGVGYLGGSYLEDNYLGDSRDYSGYTGSDALKSAIQEGATSMKVADEKVMTSIQNNIANSQNAGLAKGKAAVIKEMNAGNGESAATSAMQSAINEYFASIQQNIVTHYNSQLEQVKHHVDQVANHSDLTVGTVFASENGDDSPSNMTVNQRSLSLVDGTDATEKYLIFNTSQDGSSYESGISLTTATGAADFEVDSFSLSSGAYADYSDEFQYFQTVPMGNAFDAVVTERDKVLNDLSTFVSDVYSQYSAGDIPTEDLVDPITAATELRTDYDGMQGASAHAAMLGIPTNAEQSVYMTLENDGVDVWADVYTNKKITDGSGNEVGFQAGTTYEPTTWSEPLYIAFEYTETTDSDGNVLNSTQQDSYDGETTTTEYSDFVEVEQPFTITEITVDGESKQSFKTTSRNTQTADVSKLQEELDQIRETQLALQEEAQSGGGGFSFDSLSLGGIPGEGVALIAAGAGAWLLGK
SIO_010081: K6T50_RS18800
subclass of: SO_0000673
so part of: K6T50_RS18800
location: join(7612..8308,1..806)
location: region:1-8308:1
so has part: feature:7612-8308:1:exon
so has part: feature:1-806:1:exon

WP_222609588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7612-8308:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-806:1:exon

K6T50_RS18805
type: Gene
subclass of: SO_0000704
RO_0002162: 1017351
locus tag: K6T50_RS18805
old locus tag: K6T50_18805
so part of: sequence
location: 1537..2394
location: region:1537-2394:1
so has part: feature:1537-2394:1:exon
subclass of: SO_0000010

67180237
type: Gene
SIO_000068: ncbigene

position:1537:1
position: 1537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2394:1
position: 2394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1537-2394:1:exon

K6T50_RS18805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1017351
locus tag: K6T50_RS18805
old locus tag: K6T50_18805
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEPRPDPRRADRTAVAATVDFLRARFLSIVAVVCVGSGLIVLLGFDLSVPRRAKIAVVAGGLILPYGFIAADYVTSLMPDNEFVWLVDLDARVLDGALYRFPSDDYRELTVVGPNGNSSRSYEVTDLTPFLKIGKDVDLEEMTVVGTWRGTLSDDDLLRALSKVEECRGSLEEKAQRGFTIETQAFTIIRSAARSCVMSVVRTFEKGTLPDHGESLAEEVDAALEQYDLQDELADLDDAEIGADLEERADATAAGEQTERSEGHRADAAAGASDPAPEEVNADD
SIO_010081: K6T50_RS18805
subclass of: SO_0000673
so part of: K6T50_RS18805
location: 1537..2394
location: region:1537-2394:1
so has part: feature:1537-2394:1:exon

WP_222609589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1537-2394:1:exon

K6T50_RS18810
type: Gene
subclass of: SO_0000704
RO_0002162: 1017351
locus tag: K6T50_RS18810
old locus tag: K6T50_18810
so part of: sequence
location: 2478..3470
location: region:2478-3470:1
so has part: feature:2478-3470:1:exon
subclass of: SO_0000010

67180238
type: Gene
SIO_000068: ncbigene

position:2478:1
position: 2478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3470:1
position: 3470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2478-3470:1:exon

K6T50_RS18810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1017351
locus tag: K6T50_RS18810
old locus tag: K6T50_18810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008848495.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSENGNIDEHLLTAAKLREQIAGRLDGGPDLLDHAGMHADPDDRASLSFVEHAIADADGSATEFADTALGSEVRKTLDTDVASEAIAEGNANLMSHLVGVTEQELDASAVRLPMMLMDELENNGAPAFIAACGNPNTGKTNTMLLLCEVARASLDELSVIANFSADCVDRRVTSAHELAVALIEDRDVPKIVVIDEGSTHFDARTFRREVAVQFTPLAKRFAKLNVFACGTICHTGKDLHPEYKRLATLPFFKSEPQVAEFFSSWDAEEDFPEDRLFSGELTALEEAASSYDPNDSAPWQWDLRANLFAEDLDWPSLLDELKARGPAESS
SIO_010081: K6T50_RS18810
subclass of: SO_0000673
so part of: K6T50_RS18810
location: 2478..3470
location: region:2478-3470:1
so has part: feature:2478-3470:1:exon

WP_222609590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2478-3470:1:exon

K6T50_RS18815
type: Gene
subclass of: SO_0000704
RO_0002162: 1017351
locus tag: K6T50_RS18815
old locus tag: K6T50_18815
so part of: sequence
location: 4640..6667
location: region:4640-6667:1
so has part: feature:4640-6667:1:exon
subclass of: SO_0000010

67180239
type: Gene
SIO_000068: ncbigene

position:4640:1
position: 4640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6667:1
position: 6667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4640-6667:1:exon

K6T50_RS18815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1017351
locus tag: K6T50_RS18815
old locus tag: K6T50_18815
inference: COORDINATES: protein motif:HMM:NF018888.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSELGERAHLPLSDVHGRKLRRDCCHEEYREYTVEDSSGATEKREERVNVTSKKLYQVVADMLHWHSDYLKSTLRLEYGERADPEHTLLDVPLDNSWMAAYQDKERARLKALERETCGYETCDDCDTRWCQEQDDHETEHVVGEFDDPVVVLTGRTAAGDGRPPVDHAREIAEAWTGEHGNDGAGRSLRYVMDEKLGLESDEWVRWTQGEPHTGKRRQVGGYGNLGYHHAHDVIILEGAAATGDVTAASFRTVIEKHVEECAGAGADAHDLDAAPDEWANGDVDTVVVKNVDDEIEQSVASYAAAYLANDSKDLLERSVPYLMWAATMWATNTQKGIKSVSANRAIEADRCKHKHAAGDQGLDHGEMTNCADCRCVSAPGTAGCSRCDGRGFHVVCTACGSQWGIDQSSPARAGDDPRVAADGGADDPSPEQEREEALRDRWPSARRAASVGGETIARQCDHAEPDQCPLCATETESPDHTVSGDVPIPESAVAPEVPDSVSVRYTRPPSWSAKEVIRDDERMAATGGGVETVALDLPSAPVRVAAMATDPHGEMVCQSCVSYFDTVSEYASHGCEDGDVYIAWFPVTDPPATETLMSRDEFLSAVPDRLLEERAGATAAGEQTERSEGQRADAAADVSDRLKEYIASNSVSSVAELLGRFNLPPAARSTVEDMM
SIO_010081: K6T50_RS18815
subclass of: SO_0000673
so part of: K6T50_RS18815
location: 4640..6667
location: region:4640-6667:1
so has part: feature:4640-6667:1:exon

WP_222609585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4640-6667:1:exon

K6T50_RS18820
type: Gene
subclass of: SO_0000704
RO_0002162: 1017351
locus tag: K6T50_RS18820
old locus tag: K6T50_18820
so part of: sequence
location: 6768..7115
location: region:6768-7115:1
so has part: feature:6768-7115:1:exon
subclass of: SO_0000010

67180240
type: Gene
SIO_000068: ncbigene

position:6768:1
position: 6768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7115:1
position: 7115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6768-7115:1:exon

K6T50_RS18820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1017351
locus tag: K6T50_RS18820
old locus tag: K6T50_18820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015761930.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRADDSSGDVSFDDLEDVEVEDSGSGWINPDAGEEVVEEIKAYDPDAGDYGVVELGENERPYSLNYSERQKMIAALINGSVMAIRVSETEESFKNDDGEEITYNPKEVRFGGGN
SIO_010081: K6T50_RS18820
subclass of: SO_0000673
so part of: K6T50_RS18820
location: 6768..7115
location: region:6768-7115:1
so has part: feature:6768-7115:1:exon

WP_222609586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6768-7115:1:exon

K6T50_RS18825
type: Gene
subclass of: SO_0000704
RO_0002162: 1017351
locus tag: K6T50_RS18825
old locus tag: K6T50_18825
so part of: sequence
location: 7115..7516
location: region:7115-7516:1
so has part: feature:7115-7516:1:exon
subclass of: SO_0000010

67180241
type: Gene
SIO_000068: ncbigene

position:7516:1
position: 7516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7115-7516:1:exon

K6T50_RS18825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1017351
locus tag: K6T50_RS18825
old locus tag: K6T50_18825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008313106.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAYRNQASGLVSDYANLRTIPAMLSVVFVIGGLYQFGGISDVTLTWLSSYTLTGQHAVVASMATYAVAFASSETRALDRYETWEKVAIALGPALILGEQYTTEVTDLLTKIGDPLGMQIAFVITVVSWGVAVR
SIO_010081: K6T50_RS18825
subclass of: SO_0000673
so part of: K6T50_RS18825
location: 7115..7516
location: region:7115-7516:1
so has part: feature:7115-7516:1:exon

WP_222609587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7115-7516:1:exon