Rattus rattus isolate New Zealand chromosome Y, Rrattus_CSIRO_v1, whole genome shotgun sequence.
type: Entry
definition: Rattus rattus isolate New Zealand chromosome Y, Rrattus_CSIRO_v1, whole genome shotgun sequence.
sequence version: NC_046173.1
sequence date: 2020-03-14
sequence: sequence
division: CON
label: NC_046173.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA612505
dblink: SAMN12855339
keyword: WGS
keyword: RefSeq
source: Rattus rattus (black rat)
organism: Rattus rattus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021567.1.\nAssembly name: Rrattus_CSIRO_v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the CSIRO on 2020/03/04. The\noriginal whole-genome shotgun project has the accession\nJAAIVD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: CSIRO\nAssembly Date :: 01-SEP-2019\nAssembly Method :: Flye v. 2.5; allhic v. 0.9.8; racon v.\n 1.4.6\nAssembly Name :: Rrattus_CSIRO_v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 130.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Rattus rattus Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 2293298
topology: linear
so has quality: SO_0000987
location: 1..2293298
location: region:1-2293298:1
RO_0002162: 10117

NC_046173
type: RefSeq
SIO_000068: refseq

PRJNA612505
type: BioProject
SIO_000068: bioproject

SAMN12855339
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2293298:1
position: 2293298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2293298:1:source
so part of: sequence
organism: Rattus rattus
mol type: genomic DNA
isolate: New Zealand
chromosome: Y
sex: male
tissue type: muscle
dev stage: adult

10117
type: Taxonomy
SIO_000068: taxonomy

LOC116889597
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889597
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 14069..34074
location: region:14069-34074:1
so has part: feature:14069-34074:1:exon
subclass of: SO_0000010

116889597
type: Gene
SIO_000068: ncbigene

position:14069:1
position: 14069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34074:1
position: 34074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14069-34074:1:exon

LOC116889597
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889597
product: eukaryotic translation initiation factor 2 subunit 3, Y-linked
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 22 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032890531.1
SIO_010081: LOC116889597
subclass of: SO_0000673
so part of: LOC116889597
location: join(14069..14160,14730..14793,15310..15437,15525..15646,16607..16701,17414..17572,18849..18983,19132..19226,19914..20058,22574..22743,30316..30488,33703..34074)
location: region:14069-34074:1
so has part: feature:14069-14160:1:exon
so has part: feature:14730-14793:1:exon
so has part: feature:15310-15437:1:exon
so has part: feature:15525-15646:1:exon
so has part: feature:16607-16701:1:exon
so has part: feature:17414-17572:1:exon
so has part: feature:18849-18983:1:exon
so has part: feature:19132-19226:1:exon
so has part: feature:19914-20058:1:exon
so has part: feature:22574-22743:1:exon
so has part: feature:30316-30488:1:exon
so has part: feature:33703-34074:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14069-14160:1:exon

position:14160:1
position: 14160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14730-14793:1:exon

position:14730:1
position: 14730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14793:1
position: 14793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15310-15437:1:exon

position:15310:1
position: 15310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15437:1
position: 15437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:15525-15646:1:exon

position:15525:1
position: 15525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15646:1
position: 15646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:16607-16701:1:exon

position:16607:1
position: 16607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16701:1
position: 16701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:17414-17572:1:exon

position:17414:1
position: 17414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17572:1
position: 17572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:18849-18983:1:exon

position:18849:1
position: 18849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18983:1
position: 18983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:19132-19226:1:exon

position:19132:1
position: 19132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19226:1
position: 19226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:19914-20058:1:exon

position:19914:1
position: 19914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20058:1
position: 20058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:22574-22743:1:exon

position:22574:1
position: 22574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22743:1
position: 22743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:30316-30488:1:exon

position:30316:1
position: 30316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30488:1
position: 30488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:33703-34074:1:exon

position:33703:1
position: 33703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889597
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889597
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eukaryotic translation initiation factor 2 subunit 3, Y-linked
translation: MAGGEAGVTLGQPHLSRQDLATLDVTKLTPLSHEIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDSSCPRPECYRSCGSSTPDEFPSDIPGIKGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIVKKIPVPLRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTIDDE
SIO_010081: LOC116889597
subclass of: SO_0000673
so part of: LOC116889597
location: join(14092..14160,14730..14793,15310..15437,15525..15646,16607..16701,17414..17572,18849..18983,19132..19226,19914..20058,22574..22743,30316..30488,33703..33766)
location: region:14092-33766:1
so has part: feature:14092-14160:1:exon
so has part: feature:14730-14793:1:exon
so has part: feature:15310-15437:1:exon
so has part: feature:15525-15646:1:exon
so has part: feature:16607-16701:1:exon
so has part: feature:17414-17572:1:exon
so has part: feature:18849-18983:1:exon
so has part: feature:19132-19226:1:exon
so has part: feature:19914-20058:1:exon
so has part: feature:22574-22743:1:exon
so has part: feature:30316-30488:1:exon
so has part: feature:33703-33766:1:exon

XP_032746422.1
type: Protein
SIO_000068: ncbiprotein

position:14092:1
position: 14092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33766:1
position: 33766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14092-14160:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14730-14793:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15310-15437:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15525-15646:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:16607-16701:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17414-17572:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18849-18983:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:19132-19226:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:19914-20058:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:22574-22743:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:30316-30488:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:33703-33766:1:exon

LOC116889611
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889611
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 83165..84114
location: region:83165-84114:1
so has part: feature:83165-84114:1:exon

116889611
type: Gene
SIO_000068: ncbigene

position:83165:1
position: 83165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84114:1
position: 84114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83165-84114:1:exon

LOC116889611
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 10117
gene: LOC116889611
product: 40S ribosomal protein SA-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 32 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
transcript id: XR_004386504.1
SIO_010081: LOC116889611
so part of: LOC116889611
location: 83165..84114
location: region:83165-84114:1
so has part: feature:83165-84114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83165-84114:1:exon

LOC116889598
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889598
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 99051..100224
location: region:99051-100224:1
so has part: feature:99051-100224:1:exon

116889598
type: Gene
SIO_000068: ncbigene

position:99051:1
position: 99051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100224:1
position: 100224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99051-100224:1:exon

LOC116889598
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889598
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 9 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889598
subclass of: SO_0000673
so part of: LOC116889598
location: 99051..100224
location: region:99051-100224:1
so has part: feature:99051-100224:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99051-100224:1:exon

LOC116889616
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889616
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <136762..158928
location: region:136762-158928:1
so has part: feature:136762-158928:1:exon
subclass of: SO_0000010

116889616
type: Gene
SIO_000068: ncbigene

position:136762:1
position: 136762
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:158928:1
position: 158928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136762-158928:1:exon

LOC116889616
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889616
product: histone demethylase UTY-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_032890541.1
SIO_010081: LOC116889616
subclass of: SO_0000673
so part of: LOC116889616
location: join(<136762..136925,137659..137878,138544..138678,139745..139840,151134..151867,155979..156108,157517..157622,158291..158928)
location: region:136762-158928:1
so has part: feature:136762-136925:1:exon
so has part: feature:137659-137878:1:exon
so has part: feature:138544-138678:1:exon
so has part: feature:139745-139840:1:exon
so has part: feature:151134-151867:1:exon
so has part: feature:155979-156108:1:exon
so has part: feature:157517-157622:1:exon
so has part: feature:158291-158928:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136762-136925:1:exon

position:136925:1
position: 136925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:137659-137878:1:exon

position:137659:1
position: 137659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137878:1
position: 137878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:138544-138678:1:exon

position:138544:1
position: 138544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138678:1
position: 138678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:139745-139840:1:exon

position:139745:1
position: 139745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139840:1
position: 139840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:151134-151867:1:exon

position:151134:1
position: 151134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151867:1
position: 151867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:155979-156108:1:exon

position:155979:1
position: 155979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156108:1
position: 156108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:157517-157622:1:exon

position:157517:1
position: 157517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157622:1
position: 157622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:158291-158928:1:exon

position:158291:1
position: 158291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889616
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889616
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone demethylase UTY-like
translation: YDLANKLHIGKILFITVYSLFRCYSCIGKVQDAFVSYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGHAAAWMDLGILYESCNQTQDAIKCYLNATRSKSCSNTSVLISRIKFLQAQLCNLPQSSLQNKTKLLPSIEEAWSLPIPAELTSRQGAMNTAQQNVSDSWNSVHTASHHPVQQQVYTQCFTTQKLQGLGKDQQRPIQTGSTRYIHATSIDNQNQNGNHTLPQNSKGNTQNHSSLHIPTSEEQKIFNFTKESKDSRSKSLSPKTSRQDRDTSNIYVNAKEHSKNIHEITSVPISSLNNEDSVSPNLIIVDNPQLSVLVGEAMDSVDHDSRTCDKVNNVHPTLHKKPDNLTASSPSSASFTETLSLKLTEQMHTHIVTSFISPNSGLDTINGGPENSESSVSVNVGLRPRSQIIPSMSVSIYSSSTEVLKACRNLGKNGLSNGHILLDICPPPRPPTSPYPPLPKEKLNPPTPSIYLENKRDAFFPPLHQFCINPKNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHIVEVRTQLLQPADENWDPSGTKKIWRYENKSSHTTIAKYAQYQACSFQESLRVSLFCFEVGGKTIKGILIKYFTVHWSVSDTLMNVFNIGIDTHAPMGLSVYTCVCPGHRLIFGLIL
SIO_010081: LOC116889616
subclass of: SO_0000673
so part of: LOC116889616
location: join(<136762..136925,137659..137878,138544..138678,139745..139840,151134..151867,155979..156108,157517..157622,158291..158694)
location: region:136762-158694:1
so has part: feature:136762-136925:1:exon
so has part: feature:137659-137878:1:exon
so has part: feature:138544-138678:1:exon
so has part: feature:139745-139840:1:exon
so has part: feature:151134-151867:1:exon
so has part: feature:155979-156108:1:exon
so has part: feature:157517-157622:1:exon
so has part: feature:158291-158694:1:exon

XP_032746432.1
type: Protein
SIO_000068: ncbiprotein

position:158694:1
position: 158694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136762-136925:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:137659-137878:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:138544-138678:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:139745-139840:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:151134-151867:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155979-156108:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:157517-157622:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:158291-158694:1:exon

LOC116889602
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889602
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(258599..260607)
location: region:258599-260607:-1
so has part: feature:258599-260607:-1:exon

116889602
type: Gene
SIO_000068: ncbigene

position:258599:-1
position: 258599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260607:-1
position: 260607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258599-260607:-1:exon

LOC116889602
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889602
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116889602
subclass of: SO_0000673
so part of: LOC116889602
location: complement(258599..259054)
location: region:258599-259054:-1
so has part: feature:258599-259054:-1:exon

position:259054:-1
position: 259054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258599-259054:-1:exon

LOC116889602
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889602
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116889602
subclass of: SO_0000673
so part of: LOC116889602
location: complement(259096..259357)
location: region:259096-259357:-1
so has part: feature:259096-259357:-1:exon

position:259096:-1
position: 259096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259357:-1
position: 259357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259096-259357:-1:exon

LOC116889602
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889602
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116889602
subclass of: SO_0000673
so part of: LOC116889602
location: complement(260496..260607)
location: region:260496-260607:-1
so has part: feature:260496-260607:-1:exon

position:260496:-1
position: 260496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260496-260607:-1:exon

LOC116889617
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889617
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 417719..419273
location: region:417719-419273:1
so has part: feature:417719-419273:1:exon

116889617
type: Gene
SIO_000068: ncbigene

position:417719:1
position: 417719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419273:1
position: 419273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417719-419273:1:exon

LOC116889617
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889617
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889617
subclass of: SO_0000673
so part of: LOC116889617
location: 417719..417755
location: region:417719-417755:1
so has part: feature:417719-417755:1:exon

position:417755:1
position: 417755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417719-417755:1:exon

LOC116889617
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889617
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889617
subclass of: SO_0000673
so part of: LOC116889617
location: 418512..419273
location: region:418512-419273:1
so has part: feature:418512-419273:1:exon

position:418512:1
position: 418512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418512-419273:1:exon

LOC116889618
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889618
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 471487..495700
location: region:471487-495700:1
so has part: feature:471487-495700:1:exon

116889618
type: Gene
SIO_000068: ncbigene

position:471487:1
position: 471487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495700:1
position: 495700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471487-495700:1:exon

LOC116889618
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889618
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC116889618
subclass of: SO_0000673
so part of: LOC116889618
location: 471487..472406
location: region:471487-472406:1
so has part: feature:471487-472406:1:exon

position:472406:1
position: 472406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471487-472406:1:exon

LOC116889618
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889618
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC116889618
subclass of: SO_0000673
so part of: LOC116889618
location: 495575..495700
location: region:495575-495700:1
so has part: feature:495575-495700:1:exon

position:495575:1
position: 495575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:495575-495700:1:exon

LOC116889619
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(681521..682465)
location: region:681521-682465:-1
so has part: feature:681521-682465:-1:exon

116889619
type: Gene
SIO_000068: ncbigene

position:681521:-1
position: 681521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:682465:-1
position: 682465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681521-682465:-1:exon

LOC116889619
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889619
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC116889619
subclass of: SO_0000673
so part of: LOC116889619
location: complement(681521..682465)
location: region:681521-682465:-1
so has part: feature:681521-682465:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:681521-682465:-1:exon

LOC116889590
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889590
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(951498..952262)
location: region:951498-952262:-1
so has part: feature:951498-952262:-1:exon
subclass of: SO_0000010

116889590
type: Gene
SIO_000068: ncbigene

position:951498:-1
position: 951498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:952262:-1
position: 952262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951498-952262:-1:exon

LOC116889590
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889590
product: endogenous retrovirus group K member 10 Pro protein-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890526.1
SIO_010081: LOC116889590
subclass of: SO_0000673
so part of: LOC116889590
location: complement(join(951498..951629,951661..952262))
location: region:951498-952262:-1
so has part: feature:951661-952262:-1:exon
so has part: feature:951498-951629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:951661-952262:-1:exon

position:951661:-1
position: 951661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:951498-951629:-1:exon

position:951629:-1
position: 951629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116889590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889590
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: endogenous retrovirus group K member 10 Pro protein-like
translation: MPLMGVQPVPPDYKGPLPMGSVGLLMGRSSLTLKGLIVHPGIIGQDYTGELQVLCSCPQGVFSISPCDRIAQLIILQSLHDHFPSSGVSRGTAKFGSSGTDSAYLMMDLNSRPSLELNIEGKTFTGILNTGADKSIISSSWWPTAWPVTQSSHSLQGLGYEAKFHYQLMLLIWLAPEGQSGRFIXYVLPLPVNLWGRDVLQIMKRMGYEVGKGLGKKEQGKLEPVPQEGNIGRQGLGVS
SIO_010081: LOC116889590
subclass of: SO_0000673
so part of: LOC116889590
location: complement(join(951513..951629,951661..952262))
location: region:951513-952262:-1
so has part: feature:951661-952262:-1:exon
so has part: feature:951513-951629:-1:exon

XP_032746417.1
type: Protein
SIO_000068: ncbiprotein

position:951513:-1
position: 951513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:951661-952262:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:951513-951629:-1:exon

LOC116889620
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889620
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1012637..1015150
location: region:1012637-1015150:1
so has part: feature:1012637-1015150:1:exon
subclass of: SO_0000010

116889620
type: Gene
SIO_000068: ncbigene

position:1012637:1
position: 1012637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015150:1
position: 1015150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1012637-1015150:1:exon

LOC116889620
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889620
product: igE-binding protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_032890542.1
SIO_010081: LOC116889620
subclass of: SO_0000673
so part of: LOC116889620
location: join(1012637..1012757,1013881..1014028,1014412..1015150)
location: region:1012637-1015150:1
so has part: feature:1012637-1012757:1:exon
so has part: feature:1013881-1014028:1:exon
so has part: feature:1014412-1015150:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1012637-1012757:1:exon

position:1012757:1
position: 1012757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1013881-1014028:1:exon

position:1013881:1
position: 1013881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1014028:1
position: 1014028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1014412-1015150:1:exon

position:1014412:1
position: 1014412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889620
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: igE-binding protein-like
translation: MALDSAVPAQPLFRKQAVCTCARLCSRKSLPTLGHASEIMAAARICVSPLILAGKRWQGTFGAENPGGYTIARRREVLPVGRESKAAGCWDLKIPEFDSSETDELSSSEEEDLEEEAAHYEEEGYYPDEQQANSLGKQKEVGGGNHAISETISPRAPPPYMERFHSDSFLTKEEQKKIQQAFSVFEIADGGHVHAPVEYVQIKELTKSVRNYGVSANFTIAQIERIASLAMTPGDWQTTVKGALPYMGQYMEGKALWYDASQVQGKVNATAEGDQRNWTVDLLTGQGQYANNQTNYNWGAYTQISVATIKANQEGSFLMSSLFLLTFGGGISYRV
SIO_010081: LOC116889620
subclass of: SO_0000673
so part of: LOC116889620
location: join(1012637..1012757,1013881..1014028,1014412..1015150)
location: region:1012637-1015150:1
so has part: feature:1012637-1012757:1:exon
so has part: feature:1013881-1014028:1:exon
so has part: feature:1014412-1015150:1:exon

XP_032746433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1012637-1012757:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1013881-1014028:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1014412-1015150:1:exon

LOC116889622
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1154466..1190371)
location: region:1154466-1190371:-1
so has part: feature:1154466-1190371:-1:exon

116889622
type: Gene
SIO_000068: ncbigene

position:1154466:-1
position: 1154466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1190371:-1
position: 1190371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1154466-1190371:-1:exon

LOC116889622
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889622
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889622
subclass of: SO_0000673
so part of: LOC116889622
location: complement(1154466..1154928)
location: region:1154466-1154928:-1
so has part: feature:1154466-1154928:-1:exon

position:1154928:-1
position: 1154928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1154466-1154928:-1:exon

LOC116889622
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889622
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889622
subclass of: SO_0000673
so part of: LOC116889622
location: complement(1189471..1189940)
location: region:1189471-1189940:-1
so has part: feature:1189471-1189940:-1:exon

position:1189471:-1
position: 1189471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1189940:-1
position: 1189940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1189471-1189940:-1:exon

LOC116889622
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889622
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889622
subclass of: SO_0000673
so part of: LOC116889622
location: complement(1190137..1190371)
location: region:1190137-1190371:-1
so has part: feature:1190137-1190371:-1:exon

position:1190137:-1
position: 1190137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1190137-1190371:-1:exon

LOC116889623
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889623
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1253044..1253277
location: region:1253044-1253277:1
so has part: feature:1253044-1253277:1:exon
subclass of: SO_0000010

116889623
type: Gene
SIO_000068: ncbigene

position:1253044:1
position: 1253044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1253277:1
position: 1253277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1253044-1253277:1:exon

LOC116889623
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889623
product: protein kish-A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 7 Proteins
transcript id: XM_032890543.1
SIO_010081: LOC116889623
subclass of: SO_0000673
so part of: LOC116889623
location: 1253044..1253277
location: region:1253044-1253277:1
so has part: feature:1253044-1253277:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1253044-1253277:1:exon

LOC116889623
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889623
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein kish-A-like
translation: MTGRLKIAIFNFQSLLTVFLLLICTCAYVQSLAPSILDRNKTGVLGIFWKCAQIAERKSPYVTICCIVMAFSILFIQ
SIO_010081: LOC116889623
subclass of: SO_0000673
so part of: LOC116889623
location: 1253044..1253277
location: region:1253044-1253277:1
so has part: feature:1253044-1253277:1:exon

XP_032746434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1253044-1253277:1:exon

LOC116889624
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889624
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1413058..1418304
location: region:1413058-1418304:1
so has part: feature:1413058-1418304:1:exon

116889624
type: Gene
SIO_000068: ncbigene

position:1413058:1
position: 1413058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1418304:1
position: 1418304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1413058-1418304:1:exon

LOC116889624
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889624
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889624
subclass of: SO_0000673
so part of: LOC116889624
location: 1413058..1413161
location: region:1413058-1413161:1
so has part: feature:1413058-1413161:1:exon

position:1413161:1
position: 1413161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1413058-1413161:1:exon

LOC116889624
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889624
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889624
subclass of: SO_0000673
so part of: LOC116889624
location: 1415601..1415712
location: region:1415601-1415712:1
so has part: feature:1415601-1415712:1:exon

position:1415601:1
position: 1415601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1415712:1
position: 1415712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1415601-1415712:1:exon

LOC116889624
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889624
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889624
subclass of: SO_0000673
so part of: LOC116889624
location: 1416844..1417113
location: region:1416844-1417113:1
so has part: feature:1416844-1417113:1:exon

position:1416844:1
position: 1416844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1417113:1
position: 1417113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1416844-1417113:1:exon

LOC116889624
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889624
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889624
subclass of: SO_0000673
so part of: LOC116889624
location: 1417449..1418304
location: region:1417449-1418304:1
so has part: feature:1417449-1418304:1:exon

position:1417449:1
position: 1417449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1417449-1418304:1:exon

LOC116889625
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889625
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1424974..1429985
location: region:1424974-1429985:1
so has part: feature:1424974-1429985:1:exon

116889625
type: Gene
SIO_000068: ncbigene

position:1424974:1
position: 1424974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1429985:1
position: 1429985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1424974-1429985:1:exon

LOC116889625
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889625
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
pseudo: true
SIO_010081: LOC116889625
subclass of: SO_0000673
so part of: LOC116889625
location: 1424974..1424986
location: region:1424974-1424986:1
so has part: feature:1424974-1424986:1:exon

position:1424986:1
position: 1424986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1424974-1424986:1:exon

LOC116889625
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889625
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
pseudo: true
SIO_010081: LOC116889625
subclass of: SO_0000673
so part of: LOC116889625
location: 1426220..1426323
location: region:1426220-1426323:1
so has part: feature:1426220-1426323:1:exon

position:1426220:1
position: 1426220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1426323:1
position: 1426323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1426220-1426323:1:exon

LOC116889625
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889625
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
pseudo: true
SIO_010081: LOC116889625
subclass of: SO_0000673
so part of: LOC116889625
location: 1429349..1429985
location: region:1429349-1429985:1
so has part: feature:1429349-1429985:1:exon

position:1429349:1
position: 1429349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1429349-1429985:1:exon

LOC116889626
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889626
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1438850..1440088)
location: region:1438850-1440088:-1
so has part: feature:1438850-1440088:-1:exon

116889626
type: Gene
SIO_000068: ncbigene

position:1438850:-1
position: 1438850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1440088:-1
position: 1440088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1438850-1440088:-1:exon

LOC116889626
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889626
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889626
subclass of: SO_0000673
so part of: LOC116889626
location: complement(1438850..1439188)
location: region:1438850-1439188:-1
so has part: feature:1438850-1439188:-1:exon

position:1439188:-1
position: 1439188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1438850-1439188:-1:exon

LOC116889626
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889626
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889626
subclass of: SO_0000673
so part of: LOC116889626
location: complement(1439381..1439654)
location: region:1439381-1439654:-1
so has part: feature:1439381-1439654:-1:exon

position:1439381:-1
position: 1439381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1439654:-1
position: 1439654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1439381-1439654:-1:exon

LOC116889626
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889626
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889626
subclass of: SO_0000673
so part of: LOC116889626
location: complement(1439897..1440088)
location: region:1439897-1440088:-1
so has part: feature:1439897-1440088:-1:exon

position:1439897:-1
position: 1439897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1439897-1440088:-1:exon

LOC116889603
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889603
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1479677..1484504)
location: region:1479677-1484504:-1
so has part: feature:1479677-1484504:-1:exon
subclass of: SO_0000010

116889603
type: Gene
SIO_000068: ncbigene

position:1479677:-1
position: 1479677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1484504:-1
position: 1484504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1479677-1484504:-1:exon

LOC116889603
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889603
product: mediator of RNA polymerase II transcription subunit 14-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890534.1
SIO_010081: LOC116889603
subclass of: SO_0000673
so part of: LOC116889603
location: complement(1479677..1484504)
location: region:1479677-1484504:-1
so has part: feature:1479677-1484504:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1479677-1484504:-1:exon

LOC116889603
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889603
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14-like
translation: MAPVQLDNHQLIPPGRGGGRGGRGGGEGSSRDFVSAPAPPSPGAAMAVAAASVTSPGYRLSTLIEFLLHRAYSELMVLTDFLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWASDAGKVEKCAMITSFLDHQAILFVDTADRLASLARDALVHACLPSFAIPYAIDVLTTGSYPRLSTCIRDKIIPPDPITKIEKQAALHQLNQILRHRLVTADLPPQLANLTVANGRVKFRVEREFEATLTVMGDDPKVPWCLLKLEILVEDKQTGDGRALVHSMQIDFIHQLIQSRLFADEKPLQDMYNCLHFFCLSLQLEVLHSQTLMLIRERWGDLVQVERYRAGKCLSVWSQQVLGKKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHSRAHQKLQELKAILRSFNANENSSIETALPALIVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLEDMEKSLNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTITTETLQLANYSTHPIGRLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVSTADGENTPVMALLLQQFKDNIQDLMSYTKIGKQTIIGTKHNLSDDPCPVECKKAKRSGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSYAIRLLKIPPCKGISEETQKALDCSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGDRRVVEMFLNDWSSISRLYECVLEFAHSLPEIPAHLNFFSEVCVYNYRKLILCYGTTRGSSISIQWNSIHQKFYISLGTVGPNSGCSNCHSTILHHLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPVLGLTQRSNTAYQCFSILPHSSTHIRLAFRNMYCIDIYCLSHGVVAVRDGAYSLCDNSKLVEGFCPAPGLKTFLNMFVDSSQDAQKRALKEDDYPPSPIGGDRMDSLISQLQPPQQQPFPKQPGTSGAYPLTSSPTSYRSPVNQPPAMMHTQPPGALDSSSPYTLMSSRRAGNLPGSPPVFVSRLSPATLLPGMSPANPSLHSPVPDVSHSPRAGTSSQTMPTNISPPRKLPQRSWAASVPTILTHSALNILLLPSPMPGLIPGLAGSYLCSPLERFLGXVIMRRHLQRIIQQETLQLISSNEPGVIMFKTDALKCRVTLSPQTNQTLQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMQLEVFPDQATQLKWNVQFCLTIPPSAPPIAAPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGITQQADIPRQQNSSVAAPMMVSTILKRFAEMNPPREGECTIFAAVCDLMAHLTLPPGGCP
SIO_010081: LOC116889603
subclass of: SO_0000673
so part of: LOC116889603
location: complement(1479782..1484034)
location: region:1479782-1484034:-1
so has part: feature:1479782-1484034:-1:exon

XP_032746425.1
type: Protein
SIO_000068: ncbiprotein

position:1479782:-1
position: 1479782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1484034:-1
position: 1484034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1479782-1484034:-1:exon

Dkc1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Dkc1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1545204..1559303
location: region:1545204-1559303:1
so has part: feature:1545204-1559303:1:exon
subclass of: SO_0000010

116889610
type: Gene
SIO_000068: ncbigene

position:1545204:1
position: 1545204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1559303:1
position: 1559303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1545204-1559303:1:exon

Dkc1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Dkc1
product: dyskerin pseudouridine synthase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890538.1
SIO_010081: Dkc1
subclass of: SO_0000673
so part of: Dkc1
location: join(1545204..1545395,1546625..1546695,1547090..1547176,1547532..1547623,1548771..1548955,1549581..1549645,1550748..1550874,1551703..1551833,1553020..1553163,1556824..1556944,1558395..1558513,1559196..1559303)
location: region:1545204-1559303:1
so has part: feature:1545204-1545395:1:exon
so has part: feature:1546625-1546695:1:exon
so has part: feature:1547090-1547176:1:exon
so has part: feature:1547532-1547623:1:exon
so has part: feature:1548771-1548955:1:exon
so has part: feature:1549581-1549645:1:exon
so has part: feature:1550748-1550874:1:exon
so has part: feature:1551703-1551833:1:exon
so has part: feature:1553020-1553163:1:exon
so has part: feature:1556824-1556944:1:exon
so has part: feature:1558395-1558513:1:exon
so has part: feature:1559196-1559303:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1545204-1545395:1:exon

position:1545395:1
position: 1545395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1546625-1546695:1:exon

position:1546625:1
position: 1546625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1546695:1
position: 1546695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1547090-1547176:1:exon

position:1547090:1
position: 1547090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1547176:1
position: 1547176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1547532-1547623:1:exon

position:1547532:1
position: 1547532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1547623:1
position: 1547623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1548771-1548955:1:exon

position:1548771:1
position: 1548771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1548955:1
position: 1548955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1549581-1549645:1:exon

position:1549581:1
position: 1549581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1549645:1
position: 1549645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1550748-1550874:1:exon

position:1550748:1
position: 1550748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1550874:1
position: 1550874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1551703-1551833:1:exon

position:1551703:1
position: 1551703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1551833:1
position: 1551833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1553020-1553163:1:exon

position:1553020:1
position: 1553020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1553163:1
position: 1553163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1556824-1556944:1:exon

position:1556824:1
position: 1556824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1556944:1
position: 1556944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1558395-1558513:1:exon

position:1558395:1
position: 1558395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1558513:1
position: 1558513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1559196-1559303:1:exon

position:1559196:1
position: 1559196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Dkc1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Dkc1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H/ACA ribonucleoprotein complex subunit DKC1
translation: MADAEAAMTFPKKHKKKKDRKPLPEADVAEIQHVEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTAHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICVAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYVDYR
SIO_010081: Dkc1
subclass of: SO_0000673
so part of: Dkc1
location: join(1545380..1545395,1546625..1546695,1547090..1547176,1547532..1547623,1548771..1548955,1549581..1549645,1550748..1550874,1551703..1551833,1553020..1553163,1556824..1556944,1558395..1558513,1559196..1559303)
location: region:1545380-1559303:1
so has part: feature:1545380-1545395:1:exon
so has part: feature:1546625-1546695:1:exon
so has part: feature:1547090-1547176:1:exon
so has part: feature:1547532-1547623:1:exon
so has part: feature:1548771-1548955:1:exon
so has part: feature:1549581-1549645:1:exon
so has part: feature:1550748-1550874:1:exon
so has part: feature:1551703-1551833:1:exon
so has part: feature:1553020-1553163:1:exon
so has part: feature:1556824-1556944:1:exon
so has part: feature:1558395-1558513:1:exon
so has part: feature:1559196-1559303:1:exon

XP_032746429.1
type: Protein
SIO_000068: ncbiprotein

position:1545380:1
position: 1545380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1545380-1545395:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1546625-1546695:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1547090-1547176:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1547532-1547623:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1548771-1548955:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1549581-1549645:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1550748-1550874:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1551703-1551833:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1553020-1553163:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1556824-1556944:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1558395-1558513:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1559196-1559303:1:exon

LOC116889605
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889605
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1589675..1592990
location: region:1589675-1592990:1
so has part: feature:1589675-1592990:1:exon
subclass of: SO_0000010

116889605
type: Gene
SIO_000068: ncbigene

position:1589675:1
position: 1589675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1592990:1
position: 1592990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1589675-1592990:1:exon

LOC116889605
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889605
product: testis-specific Y-encoded protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 9 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890536.1
SIO_010081: LOC116889605
subclass of: SO_0000673
so part of: LOC116889605
location: join(1589675..1590386,1591544..1591621,1591764..1591875,1591960..1592105,1592200..1592297,1592898..1592990)
location: region:1589675-1592990:1
so has part: feature:1589675-1590386:1:exon
so has part: feature:1591544-1591621:1:exon
so has part: feature:1591764-1591875:1:exon
so has part: feature:1591960-1592105:1:exon
so has part: feature:1592200-1592297:1:exon
so has part: feature:1592898-1592990:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1589675-1590386:1:exon

position:1590386:1
position: 1590386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1591544-1591621:1:exon

position:1591544:1
position: 1591544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1591621:1
position: 1591621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1591764-1591875:1:exon

position:1591764:1
position: 1591764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1591875:1
position: 1591875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1591960-1592105:1:exon

position:1591960:1
position: 1591960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1592105:1
position: 1592105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1592200-1592297:1:exon

position:1592200:1
position: 1592200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1592297:1
position: 1592297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1592898-1592990:1:exon

position:1592898:1
position: 1592898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889605
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: testis-specific Y-encoded protein 1
translation: MENSEEESVGVAPQEFRELVLLESNLLEGEPSVQAPEQSPGAPAGDNQMVKPLVMCGPVEDWVPLAEVLHHPDTCEEGDEATMAELKVTEVVDVKNEGEEVKDQKQEGEQDQQPELEKDPEQACDSKDQQGIQRLPLSGGGPAERRSKMEELELLQLELSFVNARCSGAFARIKAKVAKMRRPHFDRRKTIIQGIPGFWAKAMMNHPQMSSIISNQDEDLLSYMLSLEVEEYNPGLRMCRMMFFFSENPYFRNDIVTKDYQLSIIGYKESDSSTIEWIGQAEHGYANCMQDTTRLTFFNWLCAHKFPGSNRIAEIIMDDLWPNPLYYYPKEDHSWREN
SIO_010081: LOC116889605
subclass of: SO_0000673
so part of: LOC116889605
location: join(1589781..1590386,1591544..1591621,1591764..1591875,1591960..1592105,1592200..1592274)
location: region:1589781-1592274:1
so has part: feature:1589781-1590386:1:exon
so has part: feature:1591544-1591621:1:exon
so has part: feature:1591764-1591875:1:exon
so has part: feature:1591960-1592105:1:exon
so has part: feature:1592200-1592274:1:exon

XP_032746427.1
type: Protein
SIO_000068: ncbiprotein

position:1589781:1
position: 1589781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1592274:1
position: 1592274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1589781-1590386:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1591544-1591621:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1591764-1591875:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1591960-1592105:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1592200-1592274:1:exon

LOC116889608
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889608
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1602650..1603108
location: region:1602650-1603108:1
so has part: feature:1602650-1603108:1:exon

116889608
type: Gene
SIO_000068: ncbigene

position:1602650:1
position: 1602650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1603108:1
position: 1603108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1602650-1603108:1:exon

LOC116889608
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889608
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889608
subclass of: SO_0000673
so part of: LOC116889608
location: 1602650..1602814
location: region:1602650-1602814:1
so has part: feature:1602650-1602814:1:exon

position:1602814:1
position: 1602814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1602650-1602814:1:exon

LOC116889608
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889608
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116889608
subclass of: SO_0000673
so part of: LOC116889608
location: 1602989..1603108
location: region:1602989-1603108:1
so has part: feature:1602989-1603108:1:exon

position:1602989:1
position: 1602989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1602989-1603108:1:exon

LOC116889604
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889604
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1631198..1648616
location: region:1631198-1648616:1
so has part: feature:1631198-1648616:1:exon
subclass of: SO_0000010

116889604
type: Gene
SIO_000068: ncbigene

position:1631198:1
position: 1631198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1648616:1
position: 1648616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1631198-1648616:1:exon

LOC116889604
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889604
product: zinc finger Y-chromosomal protein 2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
transcript id: XM_032890535.1
SIO_010081: LOC116889604
subclass of: SO_0000673
so part of: LOC116889604
location: join(1631198..1631220,1636525..1637090,1641011..1641160,1641622..1641762,1644861..1645014,1646326..1646466,1647440..1648616)
location: region:1631198-1648616:1
so has part: feature:1631198-1631220:1:exon
so has part: feature:1636525-1637090:1:exon
so has part: feature:1641011-1641160:1:exon
so has part: feature:1641622-1641762:1:exon
so has part: feature:1644861-1645014:1:exon
so has part: feature:1646326-1646466:1:exon
so has part: feature:1647440-1648616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1631198-1631220:1:exon

position:1631220:1
position: 1631220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1636525-1637090:1:exon

position:1636525:1
position: 1636525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1637090:1
position: 1637090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1641011-1641160:1:exon

position:1641011:1
position: 1641011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1641160:1
position: 1641160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1641622-1641762:1:exon

position:1641622:1
position: 1641622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1641762:1
position: 1641762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1644861-1645014:1:exon

position:1644861:1
position: 1644861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1645014:1
position: 1645014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1646326-1646466:1:exon

position:1646326:1
position: 1646326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1646466:1
position: 1646466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1647440-1648616:1:exon

position:1647440:1
position: 1647440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889604
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889604
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger Y-chromosomal protein 2-like
translation: MDGDQIIVEVQETVFLSNSDVTVHNFVPDDPDSVIIQDVIENVLIEDVHCSNILEETDISDNVIIPEQVLDLDTAEEVSLAQFPIPDILASSITSTSLTMPEHILMSEAIHVSDVGHIEQVIHDSLVETEVITDPLTADISEILVTDCASEAVLDSSGMPLEQQDDTKVNRDDYLMISLDDAGKTENEGSSEVTTNAESESDPYKLNETSPEVIKVYIFKADPEEDDVGETVDIVESKTDNGNEAEVIDQSSSIYVPRDNVYMPVSDSQKEEEDTNVAEITNXFYIEVIVGDEDAGDTAADTSEHEQQMDDSEIKAAFLPIAWAAAYDNNSDEIEEQNVTASAVLHQNESGGLDRVHKQKAKKKKRPESKQYQTAIIVAPDGQTLIVYPCMFCGKKFKTKSFLKRHIKNHPEYLAKKKYHCTDCDYSTNKKISLHNHMESHKLTIKTEKTTECDDCGKHLSHAGTLCTHKKEKEKVSKTYKCKFCDYETAEQTSLNHHLLAVHSKKYPHVCVECGKGFRHPSELKKHIRVHTGEKPYQCQYCEYKSADSSNLKTHIKTKHSKDIPLKCGICLLTFSDTKEAQQHALIHQESRTHQCSYCNHKSSNSSDLKRHIISVHTKDYPHKCDMCSKGFHRPSELKKHVATHKSKKMHQCRHCDFKSPDPFLLSRHILSVHTKNVPFKCKRCXKGFRQQCELQKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPHRCEYCKKGFRRPSEKNQHIMRHHKEVGLP
SIO_010081: LOC116889604
subclass of: SO_0000673
so part of: LOC116889604
location: join(1636556..1637090,1641011..1641160,1641622..1641762,1644861..1645014,1646326..1646466,1647440..1648616)
location: region:1636556-1648616:1
so has part: feature:1636556-1637090:1:exon
so has part: feature:1641011-1641160:1:exon
so has part: feature:1641622-1641762:1:exon
so has part: feature:1644861-1645014:1:exon
so has part: feature:1646326-1646466:1:exon
so has part: feature:1647440-1648616:1:exon

XP_032746426.1
type: Protein
SIO_000068: ncbiprotein

position:1636556:1
position: 1636556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1636556-1637090:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1641011-1641160:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1641622-1641762:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1644861-1645014:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1646326-1646466:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1647440-1648616:1:exon

LOC116889609
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889609
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1726802..1830170)
location: region:1726802-1830170:-1
so has part: feature:1726802-1830170:-1:exon
subclass of: SO_0000010

116889609
type: Gene
SIO_000068: ncbigene

position:1726802:-1
position: 1726802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1830170:-1
position: 1830170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1726802-1830170:-1:exon

LOC116889609
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889609
product: lysine-specific demethylase 5D-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 3 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890537.1
SIO_010081: LOC116889609
subclass of: SO_0000673
so part of: LOC116889609
location: complement(join(1726802..1727477,1727611..1727692,1728113..1728709,1728892..1729029,1729168..1729347,1730002..1730140,1731674..1732032,1732843..1732977,1734779..1734810,1741342..1741416,1741550..1741674,1741753..1741934,1742202..1742396,1742517..1742634,1752609..1752772,1752860..1753041,1782709..1782867,1782952..1783069,1786661..1786819,1791199..1791203,1791868..1792012,1792141..1792264,1826462..1826596,1827077..1827247,1827471..1827593,1828590..1828667,1829687..1830170))
location: region:1726802-1830170:-1
so has part: feature:1829687-1830170:-1:exon
so has part: feature:1828590-1828667:-1:exon
so has part: feature:1827471-1827593:-1:exon
so has part: feature:1827077-1827247:-1:exon
so has part: feature:1826462-1826596:-1:exon
so has part: feature:1792141-1792264:-1:exon
so has part: feature:1791868-1792012:-1:exon
so has part: feature:1791199-1791203:-1:exon
so has part: feature:1786661-1786819:-1:exon
so has part: feature:1782952-1783069:-1:exon
so has part: feature:1782709-1782867:-1:exon
so has part: feature:1752860-1753041:-1:exon
so has part: feature:1752609-1752772:-1:exon
so has part: feature:1742517-1742634:-1:exon
so has part: feature:1742202-1742396:-1:exon
so has part: feature:1741753-1741934:-1:exon
so has part: feature:1741550-1741674:-1:exon
so has part: feature:1741342-1741416:-1:exon
so has part: feature:1734779-1734810:-1:exon
so has part: feature:1732843-1732977:-1:exon
so has part: feature:1731674-1732032:-1:exon
so has part: feature:1730002-1730140:-1:exon
so has part: feature:1729168-1729347:-1:exon
so has part: feature:1728892-1729029:-1:exon
so has part: feature:1728113-1728709:-1:exon
so has part: feature:1727611-1727692:-1:exon
so has part: feature:1726802-1727477:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1829687-1830170:-1:exon

position:1829687:-1
position: 1829687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1828590-1828667:-1:exon

position:1828590:-1
position: 1828590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1828667:-1
position: 1828667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1827471-1827593:-1:exon

position:1827471:-1
position: 1827471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1827593:-1
position: 1827593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1827077-1827247:-1:exon

position:1827077:-1
position: 1827077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1827247:-1
position: 1827247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1826462-1826596:-1:exon

position:1826462:-1
position: 1826462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1826596:-1
position: 1826596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1792141-1792264:-1:exon

position:1792141:-1
position: 1792141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1792264:-1
position: 1792264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1791868-1792012:-1:exon

position:1791868:-1
position: 1791868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1792012:-1
position: 1792012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1791199-1791203:-1:exon

position:1791199:-1
position: 1791199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1791203:-1
position: 1791203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1786661-1786819:-1:exon

position:1786661:-1
position: 1786661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1786819:-1
position: 1786819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1782952-1783069:-1:exon

position:1782952:-1
position: 1782952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1783069:-1
position: 1783069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1782709-1782867:-1:exon

position:1782709:-1
position: 1782709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1782867:-1
position: 1782867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1752860-1753041:-1:exon

position:1752860:-1
position: 1752860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1753041:-1
position: 1753041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1752609-1752772:-1:exon

position:1752609:-1
position: 1752609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1752772:-1
position: 1752772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1742517-1742634:-1:exon

position:1742517:-1
position: 1742517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1742634:-1
position: 1742634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1742202-1742396:-1:exon

position:1742202:-1
position: 1742202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1742396:-1
position: 1742396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1741753-1741934:-1:exon

position:1741753:-1
position: 1741753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1741934:-1
position: 1741934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1741550-1741674:-1:exon

position:1741550:-1
position: 1741550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1741674:-1
position: 1741674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1741342-1741416:-1:exon

position:1741342:-1
position: 1741342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1741416:-1
position: 1741416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1734779-1734810:-1:exon

position:1734779:-1
position: 1734779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1734810:-1
position: 1734810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1732843-1732977:-1:exon

position:1732843:-1
position: 1732843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1732977:-1
position: 1732977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1731674-1732032:-1:exon

position:1731674:-1
position: 1731674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1732032:-1
position: 1732032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1730002-1730140:-1:exon

position:1730002:-1
position: 1730002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1730140:-1
position: 1730140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1729168-1729347:-1:exon

position:1729168:-1
position: 1729168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1729347:-1
position: 1729347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1728892-1729029:-1:exon

position:1728892:-1
position: 1728892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1729029:-1
position: 1729029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1728113-1728709:-1:exon

position:1728113:-1
position: 1728113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1728709:-1
position: 1728709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1727611-1727692:-1:exon

position:1727611:-1
position: 1727611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1727692:-1
position: 1727692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1726802-1727477:-1:exon

position:1727477:-1
position: 1727477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116889609
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889609
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 3 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: lysine-specific demethylase 5D-like
translation: MKPESDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEIDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLNKIVIEEGGYEAICKDRRWARVAQRLNYPSGKNIGSLLRSHYERIIYPYEMFQSGANHVQCNTDPFDSEEKDKEYKPHSIPLRQSVQPLKFSCYSRRAKRLQPEPEPTEEDIEKNPELKKLQIYGAGPKMIGLGLMAKEKTLRKKVTCPATVIVKGEASGFGKVTSAFSDKNLNLIKPCTEMTMQXRNNHSNTNFMDSYVCRICSRGDEDDRFLLCDGCNDNYHIFCLLPPLSEVPKGVWRCPKCILAECGVPXEAFGFEQATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNSKWTLSPEEKEYAASGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEDVMKTLTSELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGXNFVGGSELCTADWLPVGRQCIEHYRRLRRYCVFSHEELICKMAAFPEKLDLNLAVAVHKEMFIMVQEERRLRKTLLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSRSRQYLRYRYTLDELPAMLQKLKIRAESFDNWANKVQAALEVEDGRKRSFEELRALETEAHDRQFLDLLQMKKFCLSGVAYELSAVAGLLNNLFSYRLETPQLTLTELQILLKQMCTLPCTMHQIDEVKDVLQQVETYQIETREALTSLPCSLEILQSLMEKGQQLRVEVPEAHQLEELLEQAQWLDQVKQALAPSGQRHSLVIMKKLLVMGTKLASSPSVNKARAELQELLTIAEHWEEKAHFCLEASQKHSPATLEVIIREAENIPVYLPKIQSLKEALTKAQAWIADVNEIQNGDHYPCLDDLEGLVAVGRDLPVELEELKQLENQVLTAHSWKEKASKTFLKKNSCYTLLEVLCPCADAGSVSTKRSRWIEKEMGLYKYDTELLGLSAQDLRDPGSVIMAFKEGEEKEKEGILHLRHINSTKPSPMSSSINASATSICICGQVRAGVEALRCDLCHDWFHGQCVTVPHLPSSLRASHTSSQLLAWWEWDTKFLCPLCMRSRRPRLETILSLLVGLQRLSVRLPEGEALQCLTERAIGWQGRARQALASENVTALLKQLAKSRQQLQDKLRHEKPPTSHSGLPSECLTEDSDKDILKEEEELVLNEDMLKNSEKIVPKESSCERGEELLPSLLSQLTGPVLELPEATRAPLEELMMEGDLLEVTLDESHSIWQLLQAGQNPNLERIHTLLEVRCIMDSPWYQYKHNT
SIO_010081: LOC116889609
subclass of: SO_0000673
so part of: LOC116889609
location: complement(join(1727227..1727477,1727611..1727692,1728113..1728709,1728892..1729029,1729168..1729347,1730002..1730140,1731674..1732032,1732843..1732977,1734779..1734810,1741342..1741416,1741550..1741674,1741753..1741934,1742202..1742396,1742517..1742634,1752609..1752772,1752860..1753041,1782709..1782867,1782952..1783069,1786661..1786819,1791199..1791203,1791868..1792012,1792141..1792264,1826462..1826596,1827077..1827247,1827471..1827593,1828590..1828667,1829687..1829836))
location: region:1727227-1829836:-1
so has part: feature:1829687-1829836:-1:exon
so has part: feature:1828590-1828667:-1:exon
so has part: feature:1827471-1827593:-1:exon
so has part: feature:1827077-1827247:-1:exon
so has part: feature:1826462-1826596:-1:exon
so has part: feature:1792141-1792264:-1:exon
so has part: feature:1791868-1792012:-1:exon
so has part: feature:1791199-1791203:-1:exon
so has part: feature:1786661-1786819:-1:exon
so has part: feature:1782952-1783069:-1:exon
so has part: feature:1782709-1782867:-1:exon
so has part: feature:1752860-1753041:-1:exon
so has part: feature:1752609-1752772:-1:exon
so has part: feature:1742517-1742634:-1:exon
so has part: feature:1742202-1742396:-1:exon
so has part: feature:1741753-1741934:-1:exon
so has part: feature:1741550-1741674:-1:exon
so has part: feature:1741342-1741416:-1:exon
so has part: feature:1734779-1734810:-1:exon
so has part: feature:1732843-1732977:-1:exon
so has part: feature:1731674-1732032:-1:exon
so has part: feature:1730002-1730140:-1:exon
so has part: feature:1729168-1729347:-1:exon
so has part: feature:1728892-1729029:-1:exon
so has part: feature:1728113-1728709:-1:exon
so has part: feature:1727611-1727692:-1:exon
so has part: feature:1727227-1727477:-1:exon

XP_032746428.1
type: Protein
SIO_000068: ncbiprotein

position:1727227:-1
position: 1727227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1829836:-1
position: 1829836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1829687-1829836:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1828590-1828667:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1827471-1827593:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1827077-1827247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1826462-1826596:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1792141-1792264:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1791868-1792012:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1791199-1791203:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1786661-1786819:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1782952-1783069:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1782709-1782867:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1752860-1753041:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1752609-1752772:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1742517-1742634:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1742202-1742396:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1741753-1741934:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1741550-1741674:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1741342-1741416:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1734779-1734810:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1732843-1732977:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1731674-1732032:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1730002-1730140:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1729168-1729347:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1728892-1729029:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1728113-1728709:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1727611-1727692:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1727227-1727477:-1:exon

LOC116889606
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889606
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1764773..1765275
location: region:1764773-1765275:1
so has part: feature:1764773-1765275:1:exon

116889606
type: Gene
SIO_000068: ncbigene

position:1764773:1
position: 1764773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1765275:1
position: 1765275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1764773-1765275:1:exon

LOC116889606
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889606
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889606
subclass of: SO_0000673
so part of: LOC116889606
location: 1764773..1765275
location: region:1764773-1765275:1
so has part: feature:1764773-1765275:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1764773-1765275:1:exon

LOC116889627
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889627
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1829835..1834228
location: region:1829835-1834228:1
so has part: feature:1829835-1834228:1:exon

116889627
type: Gene
SIO_000068: ncbigene

position:1829835:1
position: 1829835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1834228:1
position: 1834228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1829835-1834228:1:exon

LOC116889627
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889627
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC116889627
subclass of: SO_0000673
so part of: LOC116889627
location: 1829835..1829862
location: region:1829835-1829862:1
so has part: feature:1829835-1829862:1:exon

position:1829862:1
position: 1829862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1829835-1829862:1:exon

LOC116889627
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889627
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC116889627
subclass of: SO_0000673
so part of: LOC116889627
location: 1830299..1830604
location: region:1830299-1830604:1
so has part: feature:1830299-1830604:1:exon

position:1830299:1
position: 1830299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1830604:1
position: 1830604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1830299-1830604:1:exon

LOC116889615
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889615
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1830846..1831584
location: region:1830846-1831584:1
so has part: feature:1830846-1831584:1:exon

116889615
type: Gene
SIO_000068: ncbigene

position:1830846:1
position: 1830846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1831584:1
position: 1831584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1830846-1831584:1:exon

LOC116889615
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889615
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC116889615
subclass of: SO_0000673
so part of: LOC116889615
location: 1830846..1831584
location: region:1830846-1831584:1
so has part: feature:1830846-1831584:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1830846-1831584:1:exon

LOC116889627
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889627
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC116889627
subclass of: SO_0000673
so part of: LOC116889627
location: 1833050..1833287
location: region:1833050-1833287:1
so has part: feature:1833050-1833287:1:exon

position:1833050:1
position: 1833050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1833287:1
position: 1833287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1833050-1833287:1:exon

LOC116889627
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889627
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC116889627
subclass of: SO_0000673
so part of: LOC116889627
location: 1834106..1834228
location: region:1834106-1834228:1
so has part: feature:1834106-1834228:1:exon

position:1834106:1
position: 1834106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1834106-1834228:1:exon

LOC116889592
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889592
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1835960..1846362
location: region:1835960-1846362:1
so has part: feature:1835960-1846362:1:exon
subclass of: SO_0000010

116889592
type: Gene
SIO_000068: ncbigene

position:1835960:1
position: 1835960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1846362:1
position: 1846362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1835960-1846362:1:exon

LOC116889592
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889592
product: RNA-binding motif protein, Y chromosome, family 1 member B-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 Proteins
transcript id: XM_032890528.1
SIO_010081: LOC116889592
subclass of: SO_0000673
so part of: LOC116889592
location: join(1835960..1836013,1840090..1840202,1840579..1840685,1841291..1841468,1843117..1843269,1843837..1843945,1845145..1845234,1845312..1845400,1845701..1846362)
location: region:1835960-1846362:1
so has part: feature:1835960-1836013:1:exon
so has part: feature:1840090-1840202:1:exon
so has part: feature:1840579-1840685:1:exon
so has part: feature:1841291-1841468:1:exon
so has part: feature:1843117-1843269:1:exon
so has part: feature:1843837-1843945:1:exon
so has part: feature:1845145-1845234:1:exon
so has part: feature:1845312-1845400:1:exon
so has part: feature:1845701-1846362:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1835960-1836013:1:exon

position:1836013:1
position: 1836013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1840090-1840202:1:exon

position:1840090:1
position: 1840090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1840202:1
position: 1840202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1840579-1840685:1:exon

position:1840579:1
position: 1840579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1840685:1
position: 1840685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1841291-1841468:1:exon

position:1841291:1
position: 1841291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1841468:1
position: 1841468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1843117-1843269:1:exon

position:1843117:1
position: 1843117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1843269:1
position: 1843269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1843837-1843945:1:exon

position:1843837:1
position: 1843837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1843945:1
position: 1843945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1845145-1845234:1:exon

position:1845145:1
position: 1845145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1845234:1
position: 1845234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1845312-1845400:1:exon

position:1845312:1
position: 1845312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1845400:1
position: 1845400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1845701-1846362:1:exon

position:1845701:1
position: 1845701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889592
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889592
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding motif protein, Y chromosome, family 1 member B-like
translation: MAESEQPGKIFIGGLNLETRQKTLQVIFGRFGPITHVILMRDRETKKSRGFAFVTFQCPGDAKNAVKEMNGVSLDGKRIKVEQARRPSSLERGSKRRPLSFSRTRGASRILKCGRGGSSRGRSRPSRERNLDDGRYTPNFNISSSGRHFAVKRSTSSKREGPPSKRSATAALTRANPGLRGQEPHGREVSRNMPRREPVSSRRDEYPLPRDDGYSSNDSFSRRYASTSRGYRDYGNYSSRDEHASKVFSDHAGYHGGRDRDFSEYLSGNSYRDTYESYGSFHEEPSARGTYTGNNRYDDYSSSRGGYGGGRETYSGSRSDIYGYERSGRQVLPPIDREYSEHGGREERGHSPMDRLYRASHESYTISSRFGGYHGGHEETRYESGGRR
SIO_010081: LOC116889592
subclass of: SO_0000673
so part of: LOC116889592
location: join(1840094..1840202,1840579..1840685,1841291..1841468,1843117..1843269,1843837..1843945,1845145..1845234,1845312..1845400,1845701..1846032)
location: region:1840094-1846032:1
so has part: feature:1840094-1840202:1:exon
so has part: feature:1840579-1840685:1:exon
so has part: feature:1841291-1841468:1:exon
so has part: feature:1843117-1843269:1:exon
so has part: feature:1843837-1843945:1:exon
so has part: feature:1845145-1845234:1:exon
so has part: feature:1845312-1845400:1:exon
so has part: feature:1845701-1846032:1:exon

XP_032746419.1
type: Protein
SIO_000068: ncbiprotein

position:1840094:1
position: 1840094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1846032:1
position: 1846032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1840094-1840202:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1840579-1840685:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1841291-1841468:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1843117-1843269:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1843837-1843945:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1845145-1845234:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1845312-1845400:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1845701-1846032:1:exon

LOC116889628
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889628
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1855548..1856079)
location: region:1855548-1856079:-1
so has part: feature:1855548-1856079:-1:exon

116889628
type: Gene
SIO_000068: ncbigene

position:1855548:-1
position: 1855548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1856079:-1
position: 1856079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1855548-1856079:-1:exon

LOC116889628
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889628
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889628
subclass of: SO_0000673
so part of: LOC116889628
location: complement(1855548..1855931)
location: region:1855548-1855931:-1
so has part: feature:1855548-1855931:-1:exon

position:1855931:-1
position: 1855931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1855548-1855931:-1:exon

LOC116889628
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889628
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889628
subclass of: SO_0000673
so part of: LOC116889628
location: complement(1855992..1856079)
location: region:1855992-1856079:-1
so has part: feature:1855992-1856079:-1:exon

position:1855992:-1
position: 1855992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1855992-1856079:-1:exon

LOC116889629
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1863613..1867615)
location: region:1863613-1867615:-1
so has part: feature:1863613-1867615:-1:exon

116889629
type: Gene
SIO_000068: ncbigene

position:1863613:-1
position: 1863613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1867615:-1
position: 1867615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1863613-1867615:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1863613..1863768)
location: region:1863613-1863768:-1
so has part: feature:1863613-1863768:-1:exon

position:1863768:-1
position: 1863768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1863613-1863768:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1864823..1865025)
location: region:1864823-1865025:-1
so has part: feature:1864823-1865025:-1:exon

position:1864823:-1
position: 1864823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1865025:-1
position: 1865025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1864823-1865025:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1865463..1865582)
location: region:1865463-1865582:-1
so has part: feature:1865463-1865582:-1:exon

position:1865463:-1
position: 1865463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1865582:-1
position: 1865582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1865463-1865582:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1865846..1865926)
location: region:1865846-1865926:-1
so has part: feature:1865846-1865926:-1:exon

position:1865846:-1
position: 1865846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1865926:-1
position: 1865926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1865846-1865926:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1866166..1866272)
location: region:1866166-1866272:-1
so has part: feature:1866166-1866272:-1:exon

position:1866166:-1
position: 1866166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1866272:-1
position: 1866272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1866166-1866272:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1866979..1867175)
location: region:1866979-1867175:-1
so has part: feature:1866979-1867175:-1:exon

position:1866979:-1
position: 1866979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1867175:-1
position: 1867175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1866979-1867175:-1:exon

LOC116889629
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116889629
subclass of: SO_0000673
so part of: LOC116889629
location: complement(1867487..1867615)
location: region:1867487-1867615:-1
so has part: feature:1867487-1867615:-1:exon

position:1867487:-1
position: 1867487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1867487-1867615:-1:exon

LOC116889594
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1886482..1888507
location: region:1886482-1888507:1
so has part: feature:1886482-1888507:1:exon
subclass of: SO_0000011

116889594
type: Gene
SIO_000068: ncbigene

position:1886482:1
position: 1886482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1888507:1
position: 1888507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1886482-1888507:1:exon

LOC116889594
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116889594
product: uncharacterized LOC116889594
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004386501.1
SIO_010081: LOC116889594
subclass of: SO_0000673
so part of: LOC116889594
location: join(1886482..1886694,1887336..1887465,1888420..1888507)
location: region:1886482-1888507:1
so has part: feature:1886482-1886694:1:exon
so has part: feature:1887336-1887465:1:exon
so has part: feature:1888420-1888507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1886482-1886694:1:exon

position:1886694:1
position: 1886694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1887336-1887465:1:exon

position:1887336:1
position: 1887336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1887465:1
position: 1887465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1888420-1888507:1:exon

position:1888420:1
position: 1888420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889591
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889591
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1887197..1910453)
location: region:1887197-1910453:-1
so has part: feature:1887197-1910453:-1:exon
subclass of: SO_0000010

116889591
type: Gene
SIO_000068: ncbigene

position:1887197:-1
position: 1887197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1910453:-1
position: 1910453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1887197-1910453:-1:exon

LOC116889591
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889591
product: ubiquitin-like modifier-activating enzyme 1 Y
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 15 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890527.1
SIO_010081: LOC116889591
subclass of: SO_0000673
so part of: LOC116889591
location: complement(join(1887197..1887410,1887572..1887672,1887774..1887875,1888429..1888620,1888744..1888836,1895163..1895251,1896392..1896581,1896676..1896750,1898328..1898523,1898723..1898787,1900690..1900886,1901098..1901263,1902983..1903138,1903477..1903557,1903644..1903748,1903858..1904034,1904146..1904292,1904387..1904484,1905975..1906107,1906607..1906697,1906912..1907018,1907582..1907716,1907803..1907971,1908056..1908111,1908234..1908350,1910289..1910453))
location: region:1887197-1910453:-1
so has part: feature:1910289-1910453:-1:exon
so has part: feature:1908234-1908350:-1:exon
so has part: feature:1908056-1908111:-1:exon
so has part: feature:1907803-1907971:-1:exon
so has part: feature:1907582-1907716:-1:exon
so has part: feature:1906912-1907018:-1:exon
so has part: feature:1906607-1906697:-1:exon
so has part: feature:1905975-1906107:-1:exon
so has part: feature:1904387-1904484:-1:exon
so has part: feature:1904146-1904292:-1:exon
so has part: feature:1903858-1904034:-1:exon
so has part: feature:1903644-1903748:-1:exon
so has part: feature:1903477-1903557:-1:exon
so has part: feature:1902983-1903138:-1:exon
so has part: feature:1901098-1901263:-1:exon
so has part: feature:1900690-1900886:-1:exon
so has part: feature:1898723-1898787:-1:exon
so has part: feature:1898328-1898523:-1:exon
so has part: feature:1896676-1896750:-1:exon
so has part: feature:1896392-1896581:-1:exon
so has part: feature:1895163-1895251:-1:exon
so has part: feature:1888744-1888836:-1:exon
so has part: feature:1888429-1888620:-1:exon
so has part: feature:1887774-1887875:-1:exon
so has part: feature:1887572-1887672:-1:exon
so has part: feature:1887197-1887410:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1910289-1910453:-1:exon

position:1910289:-1
position: 1910289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1908234-1908350:-1:exon

position:1908234:-1
position: 1908234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1908350:-1
position: 1908350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1908056-1908111:-1:exon

position:1908056:-1
position: 1908056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1908111:-1
position: 1908111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1907803-1907971:-1:exon

position:1907803:-1
position: 1907803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1907971:-1
position: 1907971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1907582-1907716:-1:exon

position:1907582:-1
position: 1907582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1907716:-1
position: 1907716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1906912-1907018:-1:exon

position:1906912:-1
position: 1906912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1907018:-1
position: 1907018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1906607-1906697:-1:exon

position:1906607:-1
position: 1906607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1906697:-1
position: 1906697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1905975-1906107:-1:exon

position:1905975:-1
position: 1905975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1906107:-1
position: 1906107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1904387-1904484:-1:exon

position:1904387:-1
position: 1904387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1904484:-1
position: 1904484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1904146-1904292:-1:exon

position:1904146:-1
position: 1904146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1904292:-1
position: 1904292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1903858-1904034:-1:exon

position:1903858:-1
position: 1903858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1904034:-1
position: 1904034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1903644-1903748:-1:exon

position:1903644:-1
position: 1903644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1903748:-1
position: 1903748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1903477-1903557:-1:exon

position:1903477:-1
position: 1903477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1903557:-1
position: 1903557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1902983-1903138:-1:exon

position:1902983:-1
position: 1902983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1903138:-1
position: 1903138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1901098-1901263:-1:exon

position:1901098:-1
position: 1901098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1901263:-1
position: 1901263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1900690-1900886:-1:exon

position:1900690:-1
position: 1900690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1900886:-1
position: 1900886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1898723-1898787:-1:exon

position:1898723:-1
position: 1898723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1898787:-1
position: 1898787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1898328-1898523:-1:exon

position:1898328:-1
position: 1898328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1898523:-1
position: 1898523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1896676-1896750:-1:exon

position:1896676:-1
position: 1896676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1896750:-1
position: 1896750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1896392-1896581:-1:exon

position:1896392:-1
position: 1896392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1896581:-1
position: 1896581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1895163-1895251:-1:exon

position:1895163:-1
position: 1895163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1895251:-1
position: 1895251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1888744-1888836:-1:exon

position:1888744:-1
position: 1888744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1888836:-1
position: 1888836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1888429-1888620:-1:exon

position:1888429:-1
position: 1888429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1888620:-1
position: 1888620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1887774-1887875:-1:exon

position:1887774:-1
position: 1887774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1887875:-1
position: 1887875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1887572-1887672:-1:exon

position:1887572:-1
position: 1887572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1887672:-1
position: 1887672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1887197-1887410:-1:exon

position:1887410:-1
position: 1887410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116889591
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889591
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-like modifier-activating enzyme 1 Y
translation: MSSSVLSKKRRVSGPDSKVDSSWSSTHSVMFGVPPGPNSGMSKNKEMDIDESLYSRQLYVLGHEAMKHLQTSSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLHEEDIGKNRAEVSQPRLAELNSYVPVHTYTGPLVDDFLSGFQVVVLTNTPLEYQLQVGEFCHSHGIKLVVADTRGLVGQLFCDFGEEMILTDANGEQPLSAMVSMITKENPGIVTCLEETRHGFESGDFVSFTEVQGMSELNGIGPMEIKVLGPYSFSICDTSSFSEYTRGGIVSQVKVSQKISFKSLLASLAEPEFVITDFAKCCRPAQLHIGFQALHQFCTQHSRPPRPHNEEDAAEMVTLAQAVNAQSLPAVQQDCLDIDLIRKLAYVAAGDLAPMSAFIGGLAAQEVMKACSGKFMPIRQWLYFDALECLPEHRVAFMEDKCLPRQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEITVTDMDTIEKSNLNRQFLFRPWDVTKLKSETAAAAVRDINPHIRVCSHQNRVGPETEHVYDDDFFQNLDGVANALDNVDARLYMDRRCVYYRKPLLESGTLGTKGNVQVVVPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQSAENVNQYLTDPKFMERTLQLAGTQPLEVLEAIQCSLVLQRPQTWADCVTWAYQHWHTQYSHNIQQLLHNFPPDQLTSSGVLFWSGPKRCPHPLTFDTNNPLHLDYVMAAANLFAQTYGLEGSQDCAAVTTLLQSLPAPKFAPKSGIRIHVSEQELQSTSATVDDSHVEELKTSLPTPDKMLGFKMHPIDFEKDDDSNFHMDFIVAASNLRAENYGIPPADRHKSKLIAGKIIPAIATTTSAVVGLVCLELYKVVQGHQQLDSFKNSFINLALPFFSFSAPLAPGYHQYYDQKWTLWDRFDVQGLQPSGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPATKLQERLDQPMTEIVSRVSKRKLGQHVKSLVFELCCNNESGDDIEVPYVRYIIG
SIO_010081: LOC116889591
subclass of: SO_0000673
so part of: LOC116889591
location: complement(join(1887275..1887410,1887572..1887672,1887774..1887875,1888429..1888620,1888744..1888836,1895163..1895251,1896392..1896581,1896676..1896750,1898328..1898523,1898723..1898787,1900690..1900886,1901098..1901263,1902983..1903138,1903477..1903557,1903644..1903748,1903858..1904034,1904146..1904292,1904387..1904484,1905975..1906107,1906607..1906697,1906912..1907018,1907582..1907716,1907803..1907971,1908056..1908111,1908234..1908350))
location: region:1887275-1908350:-1
so has part: feature:1908234-1908350:-1:exon
so has part: feature:1908056-1908111:-1:exon
so has part: feature:1907803-1907971:-1:exon
so has part: feature:1907582-1907716:-1:exon
so has part: feature:1906912-1907018:-1:exon
so has part: feature:1906607-1906697:-1:exon
so has part: feature:1905975-1906107:-1:exon
so has part: feature:1904387-1904484:-1:exon
so has part: feature:1904146-1904292:-1:exon
so has part: feature:1903858-1904034:-1:exon
so has part: feature:1903644-1903748:-1:exon
so has part: feature:1903477-1903557:-1:exon
so has part: feature:1902983-1903138:-1:exon
so has part: feature:1901098-1901263:-1:exon
so has part: feature:1900690-1900886:-1:exon
so has part: feature:1898723-1898787:-1:exon
so has part: feature:1898328-1898523:-1:exon
so has part: feature:1896676-1896750:-1:exon
so has part: feature:1896392-1896581:-1:exon
so has part: feature:1895163-1895251:-1:exon
so has part: feature:1888744-1888836:-1:exon
so has part: feature:1888429-1888620:-1:exon
so has part: feature:1887774-1887875:-1:exon
so has part: feature:1887572-1887672:-1:exon
so has part: feature:1887275-1887410:-1:exon

XP_032746418.1
type: Protein
SIO_000068: ncbiprotein

position:1887275:-1
position: 1887275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1908234-1908350:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1908056-1908111:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1907803-1907971:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1907582-1907716:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1906912-1907018:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1906607-1906697:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1905975-1906107:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1904387-1904484:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1904146-1904292:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1903858-1904034:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1903644-1903748:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1903477-1903557:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1902983-1903138:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1901098-1901263:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1900690-1900886:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1898723-1898787:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1898328-1898523:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1896676-1896750:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1896392-1896581:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1895163-1895251:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1888744-1888836:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1888429-1888620:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1887774-1887875:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1887572-1887672:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1887275-1887410:-1:exon

LOC116889593
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889593
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1926850..1927383)
location: region:1926850-1927383:-1
so has part: feature:1926850-1927383:-1:exon
subclass of: SO_0000010

116889593
type: Gene
SIO_000068: ncbigene

position:1926850:-1
position: 1926850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1927383:-1
position: 1927383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1926850-1927383:-1:exon

LOC116889593
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889593
product: sex-determining region Y protein-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890529.1
SIO_010081: LOC116889593
subclass of: SO_0000673
so part of: LOC116889593
location: complement(1926850..1927383)
location: region:1926850-1927383:-1
so has part: feature:1926850-1927383:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1926850-1927383:-1:exon

LOC116889593
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889593
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: sex-determining region Y protein-like
translation: MEGHVKRPMNAFMVWSRGERRKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQEAQRLKNLHREKYPNYKYQPHRRVKVPQRSYTLQREVASTKLYNLRQWDNNLHTIIYGQDWARAAHRSSKSQKSIYLQPVDIPTGYPLQQQQQQQQQQQHVHLQQQHQQQHQFH
SIO_010081: LOC116889593
subclass of: SO_0000673
so part of: LOC116889593
location: complement(1926850..1927364)
location: region:1926850-1927364:-1
so has part: feature:1926850-1927364:-1:exon

XP_032746420.1
type: Protein
SIO_000068: ncbiprotein

position:1927364:-1
position: 1927364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1926850-1927364:-1:exon

LOC116889630
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1956417..1956966
location: region:1956417-1956966:1
so has part: feature:1956417-1956966:1:exon

116889630
type: Gene
SIO_000068: ncbigene

position:1956417:1
position: 1956417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1956966:1
position: 1956966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1956417-1956966:1:exon

LOC116889630
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889630
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 15 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889630
subclass of: SO_0000673
so part of: LOC116889630
location: 1956417..1956966
location: region:1956417-1956966:1
so has part: feature:1956417-1956966:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1956417-1956966:1:exon

LOC116889632
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889632
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1964325..1986738
location: region:1964325-1986738:1
so has part: feature:1964325-1986738:1:exon
subclass of: SO_0000010

116889632
type: Gene
SIO_000068: ncbigene

position:1964325:1
position: 1964325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1986738:1
position: 1986738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1964325-1986738:1:exon

LOC116889632
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889632
product: histone demethylase UTY-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890545.1
SIO_010081: LOC116889632
subclass of: SO_0000673
so part of: LOC116889632
location: join(1964325..1964369,1978467..1978531,1978604..1978678,1979084..1979232,1980743..1980857,1985480..1985667,1986500..1986738)
location: region:1964325-1986738:1
so has part: feature:1964325-1964369:1:exon
so has part: feature:1978467-1978531:1:exon
so has part: feature:1978604-1978678:1:exon
so has part: feature:1979084-1979232:1:exon
so has part: feature:1980743-1980857:1:exon
so has part: feature:1985480-1985667:1:exon
so has part: feature:1986500-1986738:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1964325-1964369:1:exon

position:1964369:1
position: 1964369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1978467-1978531:1:exon

position:1978467:1
position: 1978467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1978531:1
position: 1978531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1978604-1978678:1:exon

position:1978604:1
position: 1978604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1978678:1
position: 1978678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1979084-1979232:1:exon

position:1979084:1
position: 1979084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1979232:1
position: 1979232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1980743-1980857:1:exon

position:1980743:1
position: 1980743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1980857:1
position: 1980857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1985480-1985667:1:exon

position:1985480:1
position: 1985480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1985667:1
position: 1985667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1986500-1986738:1:exon

position:1986500:1
position: 1986500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889632
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889632
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone demethylase UTY-like
translation: MDPYNLIMLGTEVEQEENERKTQVKDYSDNESTCSDISRRRQKVPFKTIKCGINIDLSDNKKWKLQLHELTKLPAFVRVVSAGNLLSHVGYTILGMNSVQLCMKVPGSRIPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKNNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNITWNVGPLTAFQYKLAVERYEWNKLQSIKSVVPMVHLSWNMARNIKVSDPKLFEMIK
SIO_010081: LOC116889632
subclass of: SO_0000673
so part of: LOC116889632
location: join(1964325..1964369,1978467..1978531,1978604..1978678,1979084..1979232,1980743..1980857,1985480..1985667,1986500..1986645)
location: region:1964325-1986645:1
so has part: feature:1964325-1964369:1:exon
so has part: feature:1978467-1978531:1:exon
so has part: feature:1978604-1978678:1:exon
so has part: feature:1979084-1979232:1:exon
so has part: feature:1980743-1980857:1:exon
so has part: feature:1985480-1985667:1:exon
so has part: feature:1986500-1986645:1:exon

XP_032746436.1
type: Protein
SIO_000068: ncbiprotein

position:1986645:1
position: 1986645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1964325-1964369:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1978467-1978531:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1978604-1978678:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1979084-1979232:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1980743-1980857:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1985480-1985667:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1986500-1986645:1:exon

LOC116889601
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889601
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2002949..2009928
location: region:2002949-2009928:1
so has part: feature:2002949-2009928:1:exon
subclass of: SO_0000011

116889601
type: Gene
SIO_000068: ncbigene

position:2002949:1
position: 2002949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2009928:1
position: 2009928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2002949-2009928:1:exon

LOC116889601
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116889601
product: uncharacterized LOC116889601
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_004386502.1
SIO_010081: LOC116889601
subclass of: SO_0000673
so part of: LOC116889601
location: join(2002949..2003012,2005293..2005413,2009879..2009928)
location: region:2002949-2009928:1
so has part: feature:2002949-2003012:1:exon
so has part: feature:2005293-2005413:1:exon
so has part: feature:2009879-2009928:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2002949-2003012:1:exon

position:2003012:1
position: 2003012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2005293-2005413:1:exon

position:2005293:1
position: 2005293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2005413:1
position: 2005413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2009879-2009928:1:exon

position:2009879:1
position: 2009879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889595
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889595
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2022191..2042750
location: region:2022191-2042750:1
so has part: feature:2022191-2042750:1:exon
subclass of: SO_0000010

116889595
type: Gene
SIO_000068: ncbigene

position:2022191:1
position: 2022191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2042750:1
position: 2042750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2022191-2042750:1:exon

LOC116889595
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889595
product: ATP-dependent RNA helicase DDX3Y-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, 2 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890530.1
SIO_010081: LOC116889595
subclass of: SO_0000673
so part of: LOC116889595
location: join(2022191..2022323,2025524..2025584,2028787..2028834,2031393..2031516,2032406..2032561,2033023..2033122,2034639..2034774,2036142..2036227,2036659..2036773,2036841..2036994,2037535..2037679,2037795..2037951,2038318..2038493,2038563..2038680,2039471..2039624,2040160..2040290,2040451..2042750)
location: region:2022191-2042750:1
so has part: feature:2022191-2022323:1:exon
so has part: feature:2025524-2025584:1:exon
so has part: feature:2028787-2028834:1:exon
so has part: feature:2031393-2031516:1:exon
so has part: feature:2032406-2032561:1:exon
so has part: feature:2033023-2033122:1:exon
so has part: feature:2034639-2034774:1:exon
so has part: feature:2036142-2036227:1:exon
so has part: feature:2036659-2036773:1:exon
so has part: feature:2036841-2036994:1:exon
so has part: feature:2037535-2037679:1:exon
so has part: feature:2037795-2037951:1:exon
so has part: feature:2038318-2038493:1:exon
so has part: feature:2038563-2038680:1:exon
so has part: feature:2039471-2039624:1:exon
so has part: feature:2040160-2040290:1:exon
so has part: feature:2040451-2042750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2022191-2022323:1:exon

position:2022323:1
position: 2022323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2025524-2025584:1:exon

position:2025524:1
position: 2025524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2025584:1
position: 2025584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2028787-2028834:1:exon

position:2028787:1
position: 2028787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2028834:1
position: 2028834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2031393-2031516:1:exon

position:2031393:1
position: 2031393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2031516:1
position: 2031516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2032406-2032561:1:exon

position:2032406:1
position: 2032406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2032561:1
position: 2032561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2033023-2033122:1:exon

position:2033023:1
position: 2033023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2033122:1
position: 2033122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2034639-2034774:1:exon

position:2034639:1
position: 2034639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2034774:1
position: 2034774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2036142-2036227:1:exon

position:2036142:1
position: 2036142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2036227:1
position: 2036227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2036659-2036773:1:exon

position:2036659:1
position: 2036659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2036773:1
position: 2036773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2036841-2036994:1:exon

position:2036841:1
position: 2036841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2036994:1
position: 2036994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2037535-2037679:1:exon

position:2037535:1
position: 2037535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2037679:1
position: 2037679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2037795-2037951:1:exon

position:2037795:1
position: 2037795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2037951:1
position: 2037951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2038318-2038493:1:exon

position:2038318:1
position: 2038318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2038493:1
position: 2038493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2038563-2038680:1:exon

position:2038563:1
position: 2038563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2038680:1
position: 2038680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2039471-2039624:1:exon

position:2039471:1
position: 2039471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2039624:1
position: 2039624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2040160-2040290:1:exon

position:2040160:1
position: 2040160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2040290:1
position: 2040290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2040451-2042750:1:exon

position:2040451:1
position: 2040451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889595
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:2036864..2036866,aa:OTHER)
product: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX3Y-like
translation: MAAENTVGLDQQFAGLDMNSSDNQNEGVSTESKGRYIPPHLRNRETSKGVCDKDNSGWSKDKDAYSSFGSRDSRGKPYYFSDRGSGSRGRFDDPGRSDYDCIGSRDRSGFGKFERSGYSRWGDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKVSIVFRSRVRPCMXYMVIGADAVQQIRDLERGYHLIGHQGHLVDMMEXGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKIMRFIDFSILETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHHYKGNSRGRSKSRFSGGFGARDYRQSSGYANSGFNNNRANSSRTSGSTHNRGFGGGGYGGFYSNEGYGGNYNSQAVDWWGN
SIO_010081: LOC116889595
subclass of: SO_0000673
so part of: LOC116889595
location: join(2022288..2022323,2025524..2025584,2028787..2028834,2031393..2031516,2032406..2032561,2033023..2033122,2034639..2034774,2036142..2036227,2036659..2036773,2036841..2036994,2037535..2037679,2037795..2037951,2038318..2038493,2038563..2038680,2039471..2039624,2040160..2040290,2040451..2040530)
location: region:2022288-2040530:1
so has part: feature:2022288-2022323:1:exon
so has part: feature:2025524-2025584:1:exon
so has part: feature:2028787-2028834:1:exon
so has part: feature:2031393-2031516:1:exon
so has part: feature:2032406-2032561:1:exon
so has part: feature:2033023-2033122:1:exon
so has part: feature:2034639-2034774:1:exon
so has part: feature:2036142-2036227:1:exon
so has part: feature:2036659-2036773:1:exon
so has part: feature:2036841-2036994:1:exon
so has part: feature:2037535-2037679:1:exon
so has part: feature:2037795-2037951:1:exon
so has part: feature:2038318-2038493:1:exon
so has part: feature:2038563-2038680:1:exon
so has part: feature:2039471-2039624:1:exon
so has part: feature:2040160-2040290:1:exon
so has part: feature:2040451-2040530:1:exon

XP_032746421.1
type: Protein
SIO_000068: ncbiprotein

position:2022288:1
position: 2022288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2040530:1
position: 2040530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2022288-2022323:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2025524-2025584:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2028787-2028834:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2031393-2031516:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2032406-2032561:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2033023-2033122:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2034639-2034774:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2036142-2036227:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2036659-2036773:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2036841-2036994:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2037535-2037679:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2037795-2037951:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2038318-2038493:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2038563-2038680:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2039471-2039624:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2040160-2040290:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2040451-2040530:1:exon

LOC116889612
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889612
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2054813..2086528
location: region:2054813-2086528:1
so has part: feature:2054813-2086528:1:exon
subclass of: SO_0000010

116889612
type: Gene
SIO_000068: ncbigene

position:2054813:1
position: 2054813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2086528:1
position: 2086528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2054813-2086528:1:exon

LOC116889612
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889612
product: histone demethylase UTY-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_032890539.1
SIO_010081: LOC116889612
subclass of: SO_0000673
so part of: LOC116889612
location: join(2054813..2054916,2055200..2055305,2055492..2055555,2062592..2062700,2086055..2086528)
location: region:2054813-2086528:1
so has part: feature:2054813-2054916:1:exon
so has part: feature:2055200-2055305:1:exon
so has part: feature:2055492-2055555:1:exon
so has part: feature:2062592-2062700:1:exon
so has part: feature:2086055-2086528:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2054813-2054916:1:exon

position:2054916:1
position: 2054916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2055200-2055305:1:exon

position:2055200:1
position: 2055200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2055305:1
position: 2055305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2055492-2055555:1:exon

position:2055492:1
position: 2055492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2055555:1
position: 2055555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2062592-2062700:1:exon

position:2062592:1
position: 2062592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2062700:1
position: 2062700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2086055-2086528:1:exon

position:2086055:1
position: 2086055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889612
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889612
product: histone demethylase UTY-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_032890540.1
SIO_010081: LOC116889612
subclass of: SO_0000673
so part of: LOC116889612
location: join(2054813..2054916,2055200..2055305,2055495..2055555,2062592..2062700,2086055..2086528)
location: region:2054813-2086528:1
so has part: feature:2054813-2054916:1:exon
so has part: feature:2055200-2055305:1:exon
so has part: feature:2055495-2055555:1:exon
so has part: feature:2062592-2062700:1:exon
so has part: feature:2086055-2086528:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2054813-2054916:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2055200-2055305:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2055495-2055555:1:exon

position:2055495:1
position: 2055495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2062592-2062700:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2086055-2086528:1:exon

LOC116889612
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889612
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone demethylase UTY-like isoform X1
translation: MQMPAKFDILRISGNEEKKMAAEKARGEGEEGSFSLTVEEKKALCGLDSSFFGFLSLCKDGAKMKTLLNKAIHCYESLIVKAEGKVESDFFCQLGHFNLLLEDYSKALSSYQRYYSLQTDYWKVSAHFSANFDLCVEYTLYLKCMF
SIO_010081: LOC116889612
subclass of: SO_0000673
so part of: LOC116889612
location: join(2054877..2054916,2055200..2055305,2055492..2055555,2062592..2062700,2086055..2086176)
location: region:2054877-2086176:1
so has part: feature:2054877-2054916:1:exon
so has part: feature:2055200-2055305:1:exon
so has part: feature:2055492-2055555:1:exon
so has part: feature:2062592-2062700:1:exon
so has part: feature:2086055-2086176:1:exon

XP_032746430.1
type: Protein
SIO_000068: ncbiprotein

position:2054877:1
position: 2054877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2086176:1
position: 2086176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2054877-2054916:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2055200-2055305:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2055492-2055555:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2062592-2062700:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2086055-2086176:1:exon

LOC116889612
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889612
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone demethylase UTY-like isoform X2
translation: MQMPAKFDILRISGNEEKKMAAEKARGEGEEGSFSLTVEEKKALCGLDSFFGFLSLCKDGAKMKTLLNKAIHCYESLIVKAEGKVESDFFCQLGHFNLLLEDYSKALSSYQRYYSLQTDYWKVSAHFSANFDLCVEYTLYLKCMF
SIO_010081: LOC116889612
subclass of: SO_0000673
so part of: LOC116889612
location: join(2054877..2054916,2055200..2055305,2055495..2055555,2062592..2062700,2086055..2086176)
location: region:2054877-2086176:1
so has part: feature:2054877-2054916:1:exon
so has part: feature:2055200-2055305:1:exon
so has part: feature:2055495-2055555:1:exon
so has part: feature:2062592-2062700:1:exon
so has part: feature:2086055-2086176:1:exon

XP_032746431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2054877-2054916:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2055200-2055305:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2055495-2055555:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2062592-2062700:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2086055-2086176:1:exon

LOC116889614
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889614
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2072280..2072783)
location: region:2072280-2072783:-1
so has part: feature:2072280-2072783:-1:exon

116889614
type: Gene
SIO_000068: ncbigene

position:2072280:-1
position: 2072280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2072783:-1
position: 2072783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2072280-2072783:-1:exon

LOC116889614
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889614
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889614
subclass of: SO_0000673
so part of: LOC116889614
location: complement(2072280..2072501)
location: region:2072280-2072501:-1
so has part: feature:2072280-2072501:-1:exon

position:2072501:-1
position: 2072501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2072280-2072501:-1:exon

LOC116889614
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889614
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889614
subclass of: SO_0000673
so part of: LOC116889614
location: complement(2072534..2072602)
location: region:2072534-2072602:-1
so has part: feature:2072534-2072602:-1:exon

position:2072534:-1
position: 2072534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2072602:-1
position: 2072602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2072534-2072602:-1:exon

LOC116889614
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889614
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116889614
subclass of: SO_0000673
so part of: LOC116889614
location: complement(2072719..2072783)
location: region:2072719-2072783:-1
so has part: feature:2072719-2072783:-1:exon

position:2072719:-1
position: 2072719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2072719-2072783:-1:exon

LOC116889599
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889599
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2135647..2265417
location: region:2135647-2265417:1
so has part: feature:2135647-2265417:1:exon
subclass of: SO_0000010

116889599
type: Gene
SIO_000068: ncbigene

position:2135647:1
position: 2135647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2265417:1
position: 2265417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2135647-2265417:1:exon

LOC116889599
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889599
product: probable ubiquitin carboxyl-terminal hydrolase FAF-X
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890532.1
SIO_010081: LOC116889599
subclass of: SO_0000673
so part of: LOC116889599
location: join(2135647..2135742,2140406..2140551,2142466..2142545,2144856..2144968,2147113..2147331,2158284..2158399,2161303..2161554,2161912..2162047,2163487..2163639,2172206..2172310,2175756..2175962,2177357..2177493,2179024..2179157,2190179..2190266,2191790..2192132,2192909..2193004,2194120..2194334,2199702..2199942,2200828..2200980,2208857..2208978,2217141..2217271,2217481..2217759,2220591..2220716,2220890..2221015,2222210..2222379,2223646..2223754,2223952..2224098,2225502..2225648,2230061..2230283,2234667..2234887,2236000..2236190,2243490..2243663,2245122..2245263,2247168..2247923,2248307..2248430,2253572..2253806,2254463..2254592,2256571..2256756,2257972..2258192,2258273..2258361,2260408..2260564,2261237..2261449,2262247..2262342,2265286..2265417)
location: region:2135647-2265417:1
so has part: feature:2135647-2135742:1:exon
so has part: feature:2140406-2140551:1:exon
so has part: feature:2142466-2142545:1:exon
so has part: feature:2144856-2144968:1:exon
so has part: feature:2147113-2147331:1:exon
so has part: feature:2158284-2158399:1:exon
so has part: feature:2161303-2161554:1:exon
so has part: feature:2161912-2162047:1:exon
so has part: feature:2163487-2163639:1:exon
so has part: feature:2172206-2172310:1:exon
so has part: feature:2175756-2175962:1:exon
so has part: feature:2177357-2177493:1:exon
so has part: feature:2179024-2179157:1:exon
so has part: feature:2190179-2190266:1:exon
so has part: feature:2191790-2192132:1:exon
so has part: feature:2192909-2193004:1:exon
so has part: feature:2194120-2194334:1:exon
so has part: feature:2199702-2199942:1:exon
so has part: feature:2200828-2200980:1:exon
so has part: feature:2208857-2208978:1:exon
so has part: feature:2217141-2217271:1:exon
so has part: feature:2217481-2217759:1:exon
so has part: feature:2220591-2220716:1:exon
so has part: feature:2220890-2221015:1:exon
so has part: feature:2222210-2222379:1:exon
so has part: feature:2223646-2223754:1:exon
so has part: feature:2223952-2224098:1:exon
so has part: feature:2225502-2225648:1:exon
so has part: feature:2230061-2230283:1:exon
so has part: feature:2234667-2234887:1:exon
so has part: feature:2236000-2236190:1:exon
so has part: feature:2243490-2243663:1:exon
so has part: feature:2245122-2245263:1:exon
so has part: feature:2247168-2247923:1:exon
so has part: feature:2248307-2248430:1:exon
so has part: feature:2253572-2253806:1:exon
so has part: feature:2254463-2254592:1:exon
so has part: feature:2256571-2256756:1:exon
so has part: feature:2257972-2258192:1:exon
so has part: feature:2258273-2258361:1:exon
so has part: feature:2260408-2260564:1:exon
so has part: feature:2261237-2261449:1:exon
so has part: feature:2262247-2262342:1:exon
so has part: feature:2265286-2265417:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2135647-2135742:1:exon

position:2135742:1
position: 2135742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2140406-2140551:1:exon

position:2140406:1
position: 2140406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2140551:1
position: 2140551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2142466-2142545:1:exon

position:2142466:1
position: 2142466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2142545:1
position: 2142545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2144856-2144968:1:exon

position:2144856:1
position: 2144856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2144968:1
position: 2144968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2147113-2147331:1:exon

position:2147113:1
position: 2147113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2147331:1
position: 2147331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2158284-2158399:1:exon

position:2158284:1
position: 2158284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2158399:1
position: 2158399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2161303-2161554:1:exon

position:2161303:1
position: 2161303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2161554:1
position: 2161554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2161912-2162047:1:exon

position:2161912:1
position: 2161912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2162047:1
position: 2162047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2163487-2163639:1:exon

position:2163487:1
position: 2163487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2163639:1
position: 2163639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2172206-2172310:1:exon

position:2172206:1
position: 2172206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2172310:1
position: 2172310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2175756-2175962:1:exon

position:2175756:1
position: 2175756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2175962:1
position: 2175962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2177357-2177493:1:exon

position:2177357:1
position: 2177357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2177493:1
position: 2177493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2179024-2179157:1:exon

position:2179024:1
position: 2179024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2179157:1
position: 2179157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2190179-2190266:1:exon

position:2190179:1
position: 2190179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2190266:1
position: 2190266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2191790-2192132:1:exon

position:2191790:1
position: 2191790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2192132:1
position: 2192132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2192909-2193004:1:exon

position:2192909:1
position: 2192909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2193004:1
position: 2193004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2194120-2194334:1:exon

position:2194120:1
position: 2194120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2194334:1
position: 2194334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2199702-2199942:1:exon

position:2199702:1
position: 2199702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2199942:1
position: 2199942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2200828-2200980:1:exon

position:2200828:1
position: 2200828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2200980:1
position: 2200980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2208857-2208978:1:exon

position:2208857:1
position: 2208857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2208978:1
position: 2208978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2217141-2217271:1:exon

position:2217141:1
position: 2217141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2217271:1
position: 2217271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:2217481-2217759:1:exon

position:2217481:1
position: 2217481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2217759:1
position: 2217759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:2220591-2220716:1:exon

position:2220591:1
position: 2220591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2220716:1
position: 2220716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:2220890-2221015:1:exon

position:2220890:1
position: 2220890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2221015:1
position: 2221015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:2222210-2222379:1:exon

position:2222210:1
position: 2222210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2222379:1
position: 2222379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:2223646-2223754:1:exon

position:2223646:1
position: 2223646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2223754:1
position: 2223754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:2223952-2224098:1:exon

position:2223952:1
position: 2223952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2224098:1
position: 2224098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:2225502-2225648:1:exon

position:2225502:1
position: 2225502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2225648:1
position: 2225648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:2230061-2230283:1:exon

position:2230061:1
position: 2230061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2230283:1
position: 2230283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:2234667-2234887:1:exon

position:2234667:1
position: 2234667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2234887:1
position: 2234887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:2236000-2236190:1:exon

position:2236000:1
position: 2236000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2236190:1
position: 2236190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:2243490-2243663:1:exon

position:2243490:1
position: 2243490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2243663:1
position: 2243663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:2245122-2245263:1:exon

position:2245122:1
position: 2245122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2245263:1
position: 2245263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:2247168-2247923:1:exon

position:2247168:1
position: 2247168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2247923:1
position: 2247923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:2248307-2248430:1:exon

position:2248307:1
position: 2248307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2248430:1
position: 2248430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:2253572-2253806:1:exon

position:2253572:1
position: 2253572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2253806:1
position: 2253806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:2254463-2254592:1:exon

position:2254463:1
position: 2254463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2254592:1
position: 2254592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:2256571-2256756:1:exon

position:2256571:1
position: 2256571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2256756:1
position: 2256756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:2257972-2258192:1:exon

position:2257972:1
position: 2257972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2258192:1
position: 2258192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:2258273-2258361:1:exon

position:2258273:1
position: 2258273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2258361:1
position: 2258361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:2260408-2260564:1:exon

position:2260408:1
position: 2260408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2260564:1
position: 2260564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:2261237-2261449:1:exon

position:2261237:1
position: 2261237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2261449:1
position: 2261449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:2262247-2262342:1:exon

position:2262247:1
position: 2262247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2262342:1
position: 2262342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:2265286-2265417:1:exon

position:2265286:1
position: 2265286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889599
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889599
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; substituted 3 bases at 3 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:2247636..2247638,aa:OTHER)
transl except: (pos:2247639..2247641,aa:OTHER)
transl except: (pos:2247693..2247695,aa:OTHER)
product: LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
translation: MTVTTRGSPVGENESQGQAPDGQSQPSFQQNQISSSDSSNENSPATPPDEQGQGDAPPQHEEEDPTFPHADLAKLEDMINRPRWVVPVLPKGELEVLLEASIDLTKKGIDAKSEACQRFFRDVLTVSFTKILTDEAVSGWKFEIHRCIINNTHRLMELCVAKLSQDWFPFLELLAIALNPHCKFHVYNGARPCESVSSSVQFPEDELFACSPDLRSPKGWLVDLINTFGTLNGFQILHDRFISGSALNVQTIAALIKPFGQCCEYLTQHTLKKYFIPVIEVVPQLLQKLTNEELKKEAKTEVKNDAISMIIKFLKNLASRIPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEINKVLSSVSYYTHRHGNSEEEWLTAERMAEWIQQNNILSIVLQDSLHQPQYVEKLEKILRFVIKEKALTLQDLNNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAQKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDYSCSQDRDTQKIQWIDCFIEEFRTNNKWVIPALKQIKEICSLFGEAPQNLSQTHRSPHVFYRHDLISQLQHNHALVTLVAENLATYMSSIRLYARDHEDYDPQTIRLGSRYSHVQEVQERLNFLRFLLKDGQLWLCASQAKQIWHCLAENAVYFSDREACFMWYSKLMGDEPDLDPDINKEFFESNVLQLDPSLLTENGIKCFERFFKTVNCREGKLMIKRKVYMMDDLDLIGLDYLWKVVIQSNDDISNRAIDLLKEIYTSLGPRLQANQVVIHEDFIQSCFDRMKSSYDTLHVLDSDKDNIFSCARQEAIRIVRILTVLREYISECDSDYHEERMILPMSRAFRGKHLSLTVRFPNQSKEVDDLDILSHTNATIGSVRRCILNRINANVTHTKIELFIGGELIDSEDDRKLVEQLNLKDKSLITAKFIQINSNMPSSPDSSSDSSAGSPGNHCHNNYRDVPNSEMENCLPGVIMSLQPRYISFLWQVADLGSMLTMPTLRDGARILMKLMPPDNTTIENLRAVCSDHLNLGERRLGQSLHSLFFGSSASKVLYLTEVVYILLMPAGAHLADISSDFQYHFLKNGGLPLVLSMLIQNNFLPNTDVETRRDAYYSALKIAKLLLTTIGYGHVQAIAEACQPVADGTDPKTPINQATHDQAVVLQNALQSIPNPSSECMLRNVSIRLAQQISGLASRYIPDICVIRAIQKIIWTSGCGSLELVFSPHEDITKTYKMTTSTRSNPEGKDEQVCCEALEVMTLCFALIPTALDSLSKEKAWQSFVIDLLLYCPSKTIRQLAQEQFFLICTRCCMGHRPLLFFITLLFTILGSAATEKGKHSDVYFPLLRRLLTYAYNSNIHIPNVDVLLNDEINWLKRVRDYIKNTGETSVEDPILEGHLGVTKELLSFQTPDKKYHIGCKAGGANLVKELIDDFIFPASKAYLQYTRSGEMPTKQTIPVCGSPATVNAGFELLVALAFGCVRNLKQIVNCLTEMFYIGTPVTTCEALAEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIENIWNDTDDDTFKDERQDSENNIDPRDDVFGYPHQFEDKQTLNKAEDRKEYNIGVLKHLQITFGHLAASQLQYYVPRGFWQQFRLWGEPVNLREQHDALEFFNSLVDSLDEAFKALGHPTLLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYIKGDLLEGANAYHCEKCDKKVDTVKRLLIKKLPSVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGATKLEGDGVHPQTQLIKQNEQSENVVPGSTKYRLVGVLVHSGQANGGHYYSYIIQRNGKDNNRGRWFKFDDGDVTECKMDDDENEKSMCFWWGVYGEDFDHIXXSVSYRRQKRCWNVYSFLXTRMESLTDEDNEMMITYLSRANLPEPHQIMSPDIERSVWKQNVQF…
SIO_010081: LOC116889599
subclass of: SO_0000673
so part of: LOC116889599
location: join(2135647..2135742,2140406..2140551,2142466..2142545,2144856..2144968,2147113..2147331,2158284..2158399,2161303..2161554,2161912..2162047,2163487..2163639,2172206..2172310,2175756..2175962,2177357..2177493,2179024..2179157,2190179..2190266,2191790..2192132,2192909..2193004,2194120..2194334,2199702..2199942,2200828..2200980,2208857..2208978,2217141..2217271,2217481..2217759,2220591..2220716,2220890..2221015,2222210..2222379,2223646..2223754,2223952..2224098,2225502..2225648,2230061..2230283,2234667..2234887,2236000..2236190,2243490..2243663,2245122..2245263,2247168..2247923,2248307..2248430,2253572..2253806,2254463..2254592,2256571..2256756,2257972..2258192,2258273..2258361,2260408..2260564,2261237..2261449,2262247..2262342,2265286..2265417)
location: region:2135647-2265417:1
so has part: feature:2135647-2135742:1:exon
so has part: feature:2140406-2140551:1:exon
so has part: feature:2142466-2142545:1:exon
so has part: feature:2144856-2144968:1:exon
so has part: feature:2147113-2147331:1:exon
so has part: feature:2158284-2158399:1:exon
so has part: feature:2161303-2161554:1:exon
so has part: feature:2161912-2162047:1:exon
so has part: feature:2163487-2163639:1:exon
so has part: feature:2172206-2172310:1:exon
so has part: feature:2175756-2175962:1:exon
so has part: feature:2177357-2177493:1:exon
so has part: feature:2179024-2179157:1:exon
so has part: feature:2190179-2190266:1:exon
so has part: feature:2191790-2192132:1:exon
so has part: feature:2192909-2193004:1:exon
so has part: feature:2194120-2194334:1:exon
so has part: feature:2199702-2199942:1:exon
so has part: feature:2200828-2200980:1:exon
so has part: feature:2208857-2208978:1:exon
so has part: feature:2217141-2217271:1:exon
so has part: feature:2217481-2217759:1:exon
so has part: feature:2220591-2220716:1:exon
so has part: feature:2220890-2221015:1:exon
so has part: feature:2222210-2222379:1:exon
so has part: feature:2223646-2223754:1:exon
so has part: feature:2223952-2224098:1:exon
so has part: feature:2225502-2225648:1:exon
so has part: feature:2230061-2230283:1:exon
so has part: feature:2234667-2234887:1:exon
so has part: feature:2236000-2236190:1:exon
so has part: feature:2243490-2243663:1:exon
so has part: feature:2245122-2245263:1:exon
so has part: feature:2247168-2247923:1:exon
so has part: feature:2248307-2248430:1:exon
so has part: feature:2253572-2253806:1:exon
so has part: feature:2254463-2254592:1:exon
so has part: feature:2256571-2256756:1:exon
so has part: feature:2257972-2258192:1:exon
so has part: feature:2258273-2258361:1:exon
so has part: feature:2260408-2260564:1:exon
so has part: feature:2261237-2261449:1:exon
so has part: feature:2262247-2262342:1:exon
so has part: feature:2265286-2265417:1:exon

XP_032746423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2135647-2135742:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2140406-2140551:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2142466-2142545:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2144856-2144968:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2147113-2147331:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2158284-2158399:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2161303-2161554:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2161912-2162047:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2163487-2163639:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2172206-2172310:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2175756-2175962:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2177357-2177493:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2179024-2179157:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2190179-2190266:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2191790-2192132:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2192909-2193004:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2194120-2194334:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2199702-2199942:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2200828-2200980:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2208857-2208978:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2217141-2217271:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2217481-2217759:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2220591-2220716:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2220890-2221015:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2222210-2222379:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:2223646-2223754:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:2223952-2224098:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:2225502-2225648:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:2230061-2230283:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:2234667-2234887:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:2236000-2236190:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:2243490-2243663:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:2245122-2245263:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:2247168-2247923:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:2248307-2248430:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:2253572-2253806:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:2254463-2254592:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:2256571-2256756:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:2257972-2258192:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:2258273-2258361:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:2260408-2260564:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:2261237-2261449:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:2262247-2262342:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:2265286-2265417:1:exon

LOC116889633
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889633
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 2257678..2257774
location: region:2257678-2257774:1
so has part: feature:2257678-2257774:1:exon

116889633
type: Gene
SIO_000068: ncbigene

position:2257678:1
position: 2257678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2257774:1
position: 2257774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2257678-2257774:1:exon

LOC116889633
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889633
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116889633
subclass of: SO_0000673
so part of: LOC116889633
location: 2257678..2257774
location: region:2257678-2257774:1
so has part: feature:2257678-2257774:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2257678-2257774:1:exon