Rattus rattus isolate New Zealand chromosome X, Rrattus_CSIRO_v1, whole genome shotgun sequence.
type: Entry
definition: Rattus rattus isolate New Zealand chromosome X, Rrattus_CSIRO_v1, whole genome shotgun sequence.
sequence version: NC_046172.1
sequence date: 2020-03-14
sequence: sequence
division: CON
label: NC_046172.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA612505
dblink: SAMN12855339
keyword: WGS
keyword: RefSeq
source: Rattus rattus (black rat)
organism: Rattus rattus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021566.1.\nAssembly name: Rrattus_CSIRO_v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the CSIRO on 2020/03/04. The\noriginal whole-genome shotgun project has the accession\nJAAIVD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: CSIRO\nAssembly Date :: 01-SEP-2019\nAssembly Method :: Flye v. 2.5; allhic v. 0.9.8; racon v.\n 1.4.6\nAssembly Name :: Rrattus_CSIRO_v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 130.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Rattus rattus Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 130373513
topology: linear
so has quality: SO_0000987
location: 1..130373513
location: region:1-130373513:1
RO_0002162: 10117

NC_046172
type: RefSeq
SIO_000068: refseq

PRJNA612505
type: BioProject
SIO_000068: bioproject

SAMN12855339
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130373513:1
position: 130373513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-130373513:1:source
so part of: sequence
organism: Rattus rattus
mol type: genomic DNA
isolate: New Zealand
chromosome: X
sex: male
tissue type: muscle
dev stage: adult

10117
type: Taxonomy
SIO_000068: taxonomy

LOC116888929
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888929
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(63370..96993)
location: region:63370-96993:-1
so has part: feature:63370-96993:-1:exon
subclass of: SO_0000010

116888929
type: Gene
SIO_000068: ncbigene

position:63370:-1
position: 63370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96993:-1
position: 96993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63370-96993:-1:exon

LOC116888929
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888929
product: uncharacterized LOC116888929
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890171.1
SIO_010081: LOC116888929
subclass of: SO_0000673
so part of: LOC116888929
location: complement(join(63370..63441,64064..64163,67512..67614,67938..68052,68501..68574,76397..76603,85957..86112,96897..96993))
location: region:63370-96993:-1
so has part: feature:96897-96993:-1:exon
so has part: feature:85957-86112:-1:exon
so has part: feature:76397-76603:-1:exon
so has part: feature:68501-68574:-1:exon
so has part: feature:67938-68052:-1:exon
so has part: feature:67512-67614:-1:exon
so has part: feature:64064-64163:-1:exon
so has part: feature:63370-63441:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96897-96993:-1:exon

position:96897:-1
position: 96897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:85957-86112:-1:exon

position:85957:-1
position: 85957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86112:-1
position: 86112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:76397-76603:-1:exon

position:76397:-1
position: 76397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76603:-1
position: 76603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:68501-68574:-1:exon

position:68501:-1
position: 68501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68574:-1
position: 68574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:67938-68052:-1:exon

position:67938:-1
position: 67938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68052:-1
position: 68052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:67512-67614:-1:exon

position:67512:-1
position: 67512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67614:-1
position: 67614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:64064-64163:-1:exon

position:64064:-1
position: 64064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64163:-1
position: 64163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:63370-63441:-1:exon

position:63441:-1
position: 63441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888929
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888929
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116888929
translation: MTLPVSDPTAWATAMNNLGMAPLGIAGQPILPDFDPALGMMTGIPPITPMMPGLGIVPPPIPPDMPVVKEIIHCKSCTLFPPNPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIRKSKKNFCHIRFAEEYMVDKALYLSDCIPSAMTHSVNLRKTKPKPEEACKAFEDISKYFSKEEWAKLSHSEKITYVYMKRNYTTMTNLGLRAHLPDFMESNEQATKSVLSDSDEVFSHESQGKRRPVSIWSHRLRERKKQVIYEEISDPEDEKEEREEEHHGVKKNIIDLKIMGTTLKS
SIO_010081: LOC116888929
subclass of: SO_0000673
so part of: LOC116888929
location: complement(join(63370..63441,64064..64163,67512..67614,67938..68052,68501..68574,76397..76603,85957..86112,96897..96993))
location: region:63370-96993:-1
so has part: feature:96897-96993:-1:exon
so has part: feature:85957-86112:-1:exon
so has part: feature:76397-76603:-1:exon
so has part: feature:68501-68574:-1:exon
so has part: feature:67938-68052:-1:exon
so has part: feature:67512-67614:-1:exon
so has part: feature:64064-64163:-1:exon
so has part: feature:63370-63441:-1:exon

XP_032746062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96897-96993:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:85957-86112:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:76397-76603:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:68501-68574:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:67938-68052:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67512-67614:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64064-64163:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:63370-63441:-1:exon

LOC116888931
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888931
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 188954..190823
location: region:188954-190823:1
so has part: feature:188954-190823:1:exon

116888931
type: Gene
SIO_000068: ncbigene

position:188954:1
position: 188954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190823:1
position: 190823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188954-190823:1:exon

LOC116888931
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888931
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888931
subclass of: SO_0000673
so part of: LOC116888931
location: 188954..190823
location: region:188954-190823:1
so has part: feature:188954-190823:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:188954-190823:1:exon

Vbp1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Vbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(273297..295485)
location: region:273297-295485:-1
so has part: feature:273297-295485:-1:exon
subclass of: SO_0000010

116888508
type: Gene
SIO_000068: ncbigene

position:273297:-1
position: 273297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:295485:-1
position: 295485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:273297-295485:-1:exon

Vbp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Vbp1
product: VHL binding protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 12 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889801.1
SIO_010081: Vbp1
subclass of: SO_0000673
so part of: Vbp1
location: complement(join(273297..273528,274929..275067,275968..276066,277069..277135,277595..277719,295367..295485))
location: region:273297-295485:-1
so has part: feature:295367-295485:-1:exon
so has part: feature:277595-277719:-1:exon
so has part: feature:277069-277135:-1:exon
so has part: feature:275968-276066:-1:exon
so has part: feature:274929-275067:-1:exon
so has part: feature:273297-273528:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:295367-295485:-1:exon

position:295367:-1
position: 295367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:277595-277719:-1:exon

position:277595:-1
position: 277595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277719:-1
position: 277719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:277069-277135:-1:exon

position:277069:-1
position: 277069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277135:-1
position: 277135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:275968-276066:-1:exon

position:275968:-1
position: 275968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276066:-1
position: 276066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:274929-275067:-1:exon

position:274929:-1
position: 274929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275067:-1
position: 275067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:273297-273528:-1:exon

position:273528:-1
position: 273528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Vbp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Vbp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: prefoldin subunit 3
translation: MAAAQGGRGLEAGNGRRLHLGIPEAVFVEDVDAFMAQPGNESADAALRKLDERYQKYKFMELSLAQRKRRLKSQIPEIKQTLEILKYMQRKKGSPHAMETRFLLADNLYCKALVPPTDRVCLWLGANVMLEYDVDEARALLEKNLATAARNLEALEDDLDFLRDQFTTTEVNMARVYNWDVKRRSRDDSGAAKSKA
SIO_010081: Vbp1
subclass of: SO_0000673
so part of: Vbp1
location: complement(join(273452..273528,274929..275067,275968..276066,277069..277135,277595..277719,295367..295450))
location: region:273452-295450:-1
so has part: feature:295367-295450:-1:exon
so has part: feature:277595-277719:-1:exon
so has part: feature:277069-277135:-1:exon
so has part: feature:275968-276066:-1:exon
so has part: feature:274929-275067:-1:exon
so has part: feature:273452-273528:-1:exon

XP_032745692.1
type: Protein
SIO_000068: ncbiprotein

position:273452:-1
position: 273452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:295450:-1
position: 295450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295367-295450:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:277595-277719:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:277069-277135:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:275968-276066:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:274929-275067:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:273452-273528:-1:exon

Mpp1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Mpp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 302067..310291
location: region:302067-310291:1
so has part: feature:302067-310291:1:exon
subclass of: SO_0000010

116888889
type: Gene
SIO_000068: ncbigene

position:302067:1
position: 302067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:310291:1
position: 310291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302067-310291:1:exon

Mpp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Mpp1
product: membrane palmitoylated protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 8 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890151.1
SIO_010081: Mpp1
subclass of: SO_0000673
so part of: Mpp1
location: join(302067..302206,303984..304109,304708..304789,305578..305663,306414..306482,306946..307142,307855..307961,308171..308251,308520..308600,308897..309099,309499..309573,309857..310291)
location: region:302067-310291:1
so has part: feature:302067-302206:1:exon
so has part: feature:303984-304109:1:exon
so has part: feature:304708-304789:1:exon
so has part: feature:305578-305663:1:exon
so has part: feature:306414-306482:1:exon
so has part: feature:306946-307142:1:exon
so has part: feature:307855-307961:1:exon
so has part: feature:308171-308251:1:exon
so has part: feature:308520-308600:1:exon
so has part: feature:308897-309099:1:exon
so has part: feature:309499-309573:1:exon
so has part: feature:309857-310291:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:302067-302206:1:exon

position:302206:1
position: 302206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:303984-304109:1:exon

position:303984:1
position: 303984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304109:1
position: 304109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:304708-304789:1:exon

position:304708:1
position: 304708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304789:1
position: 304789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:305578-305663:1:exon

position:305578:1
position: 305578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:305663:1
position: 305663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:306414-306482:1:exon

position:306414:1
position: 306414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:306482:1
position: 306482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:306946-307142:1:exon

position:306946:1
position: 306946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:307142:1
position: 307142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:307855-307961:1:exon

position:307855:1
position: 307855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:307961:1
position: 307961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:308171-308251:1:exon

position:308171:1
position: 308171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:308251:1
position: 308251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:308520-308600:1:exon

position:308520:1
position: 308520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:308600:1
position: 308600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:308897-309099:1:exon

position:308897:1
position: 308897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309099:1
position: 309099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:309499-309573:1:exon

position:309499:1
position: 309499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309573:1
position: 309573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:309857-310291:1:exon

position:309857:1
position: 309857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Mpp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Mpp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 55 kDa erythrocyte membrane protein
translation: MTLESGSGVGDGGDSGSGLRTALSDLFLEQLLRNRGGRGDEAPSDRAEDGAVRTNGSVDPGEVEEEAARGVRVVRFEKSAEPMGITLKLNDKAASCTVARILHGGAAHRQGSLHVGDEILEINGTDVTGRSVDQLQRAMKETRGTISLKVIPRQQSRLPALQMFVRAQFDYDPQKDDLIPCKEAGLAFSTGDVIQVINKDDSNWWQGRVQGNARGSAGILPSPELQEWRAASAAQAAPAEAPSCSPFGKKKKCKDKYLAKHSAIFDRLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLAQNPERFAYPAPHTTRPPRKGEADGAEYHFVSAEEMARGIAANEFLEFGSFRGDMFGTRLDAVRRIHECGQVAVLDIEPQTLKAVRTAELSPFIVFIAPTDQGAETEALRQLRADSDAIRGRYAHLFDLCLVHNGVDETLGRLCEAFDRACADPQWVPVSWVY
SIO_010081: Mpp1
subclass of: SO_0000673
so part of: Mpp1
location: join(302084..302206,303984..304109,304708..304789,305578..305663,306414..306482,306946..307142,307855..307961,308171..308251,308520..308600,308897..309099,309499..309573,309857..310033)
location: region:302084-310033:1
so has part: feature:302084-302206:1:exon
so has part: feature:303984-304109:1:exon
so has part: feature:304708-304789:1:exon
so has part: feature:305578-305663:1:exon
so has part: feature:306414-306482:1:exon
so has part: feature:306946-307142:1:exon
so has part: feature:307855-307961:1:exon
so has part: feature:308171-308251:1:exon
so has part: feature:308520-308600:1:exon
so has part: feature:308897-309099:1:exon
so has part: feature:309499-309573:1:exon
so has part: feature:309857-310033:1:exon

XP_032746042.1
type: Protein
SIO_000068: ncbiprotein

position:302084:1
position: 302084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:310033:1
position: 310033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302084-302206:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:303984-304109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304708-304789:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:305578-305663:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:306414-306482:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:306946-307142:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:307855-307961:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:308171-308251:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:308520-308600:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:308897-309099:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:309499-309573:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:309857-310033:1:exon

LOC116888932
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 392330..395274
location: region:392330-395274:1
so has part: feature:392330-395274:1:exon

116888932
type: Gene
SIO_000068: ncbigene

position:392330:1
position: 392330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:395274:1
position: 395274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392330-395274:1:exon

LOC116888932
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888932
subclass of: SO_0000673
so part of: LOC116888932
location: 392330..392432
location: region:392330-392432:1
so has part: feature:392330-392432:1:exon

position:392432:1
position: 392432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392330-392432:1:exon

LOC116888932
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888932
subclass of: SO_0000673
so part of: LOC116888932
location: 393414..393547
location: region:393414-393547:1
so has part: feature:393414-393547:1:exon

position:393414:1
position: 393414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:393547:1
position: 393547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393414-393547:1:exon

LOC116888932
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888932
subclass of: SO_0000673
so part of: LOC116888932
location: 393695..393850
location: region:393695-393850:1
so has part: feature:393695-393850:1:exon

position:393695:1
position: 393695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:393850:1
position: 393850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393695-393850:1:exon

LOC116888932
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888932
subclass of: SO_0000673
so part of: LOC116888932
location: 394322..394463
location: region:394322-394463:1
so has part: feature:394322-394463:1:exon

position:394322:1
position: 394322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394463:1
position: 394463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394322-394463:1:exon

LOC116888932
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888932
subclass of: SO_0000673
so part of: LOC116888932
location: 394587..394671
location: region:394587-394671:1
so has part: feature:394587-394671:1:exon

position:394587:1
position: 394587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394671:1
position: 394671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394587-394671:1:exon

LOC116888932
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888932
subclass of: SO_0000673
so part of: LOC116888932
location: 395053..395274
location: region:395053-395274:1
so has part: feature:395053-395274:1:exon

position:395053:1
position: 395053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395053-395274:1:exon

LOC116888933
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888933
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 405420..413243
location: region:405420-413243:1
so has part: feature:405420-413243:1:exon

116888933
type: Gene
SIO_000068: ncbigene

position:405420:1
position: 405420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:413243:1
position: 413243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405420-413243:1:exon

LOC116888933
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888933
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC116888933
subclass of: SO_0000673
so part of: LOC116888933
location: 405420..405494
location: region:405420-405494:1
so has part: feature:405420-405494:1:exon

position:405494:1
position: 405494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405420-405494:1:exon

LOC116888933
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888933
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC116888933
subclass of: SO_0000673
so part of: LOC116888933
location: 406212..407024
location: region:406212-407024:1
so has part: feature:406212-407024:1:exon

position:406212:1
position: 406212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:407024:1
position: 407024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406212-407024:1:exon

LOC116888933
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888933
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC116888933
subclass of: SO_0000673
so part of: LOC116888933
location: 413000..413243
location: region:413000-413243:1
so has part: feature:413000-413243:1:exon

position:413000:1
position: 413000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413000-413243:1:exon

LOC116888934
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888934
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 429002..438232
location: region:429002-438232:1
so has part: feature:429002-438232:1:exon

116888934
type: Gene
SIO_000068: ncbigene

position:429002:1
position: 429002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438232:1
position: 438232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429002-438232:1:exon

LOC116888934
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888934
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888934
subclass of: SO_0000673
so part of: LOC116888934
location: 429002..429008
location: region:429002-429008:1
so has part: feature:429002-429008:1:exon

position:429008:1
position: 429008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429002-429008:1:exon

LOC116888934
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888934
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888934
subclass of: SO_0000673
so part of: LOC116888934
location: 429348..429717
location: region:429348-429717:1
so has part: feature:429348-429717:1:exon

position:429348:1
position: 429348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429717:1
position: 429717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429348-429717:1:exon

LOC116888934
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888934
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888934
subclass of: SO_0000673
so part of: LOC116888934
location: 436097..436396
location: region:436097-436396:1
so has part: feature:436097-436396:1:exon

position:436097:1
position: 436097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436396:1
position: 436396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:436097-436396:1:exon

LOC116888934
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888934
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888934
subclass of: SO_0000673
so part of: LOC116888934
location: 438206..438232
location: region:438206-438232:1
so has part: feature:438206-438232:1:exon

position:438206:1
position: 438206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:438206-438232:1:exon

Pnpla4
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 456969..461003
location: region:456969-461003:1
so has part: feature:456969-461003:1:exon
subclass of: SO_0000010

116889161
type: Gene
SIO_000068: ncbigene

position:456969:1
position: 456969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461003:1
position: 461003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:456969-461003:1:exon

Pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Pnpla4
product: patatin like phospholipase domain containing 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_032890327.1
SIO_010081: Pnpla4
subclass of: SO_0000673
so part of: Pnpla4
location: join(456969..457443,458031..458218,458851..458945,459151..459286,459743..459808,459910..461003)
location: region:456969-461003:1
so has part: feature:456969-457443:1:exon
so has part: feature:458031-458218:1:exon
so has part: feature:458851-458945:1:exon
so has part: feature:459151-459286:1:exon
so has part: feature:459743-459808:1:exon
so has part: feature:459910-461003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:456969-457443:1:exon

position:457443:1
position: 457443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:458031-458218:1:exon

position:458031:1
position: 458031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458218:1
position: 458218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:458851-458945:1:exon

position:458851:1
position: 458851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458945:1
position: 458945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:459151-459286:1:exon

position:459151:1
position: 459151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459286:1
position: 459286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:459743-459808:1:exon

position:459743:1
position: 459743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459808:1
position: 459808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:459910-461003:1:exon

position:459910:1
position: 459910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Pnpla4
product: patatin like phospholipase domain containing 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_032890329.1
SIO_010081: Pnpla4
subclass of: SO_0000673
so part of: Pnpla4
location: join(456970..457443,457595..457783,458031..458218,458851..458945,459151..459286,459743..459808,459910..461003)
location: region:456970-461003:1
so has part: feature:456970-457443:1:exon
so has part: feature:457595-457783:1:exon
so has part: feature:458031-458218:1:exon
so has part: feature:458851-458945:1:exon
so has part: feature:459151-459286:1:exon
so has part: feature:459743-459808:1:exon
so has part: feature:459910-461003:1:exon

position:456970:1
position: 456970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:456970-457443:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:457595-457783:1:exon

position:457595:1
position: 457595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457783:1
position: 457783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:458031-458218:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:458851-458945:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459151-459286:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:459743-459808:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:459910-461003:1:exon

Pnpla4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Pnpla4
product: patatin like phospholipase domain containing 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_032890328.1
SIO_010081: Pnpla4
subclass of: SO_0000673
so part of: Pnpla4
location: join(456970..457443,457625..457783,458031..458218,458851..458945,459151..459286,459743..459808,459910..461003)
location: region:456970-461003:1
so has part: feature:456970-457443:1:exon
so has part: feature:457625-457783:1:exon
so has part: feature:458031-458218:1:exon
so has part: feature:458851-458945:1:exon
so has part: feature:459151-459286:1:exon
so has part: feature:459743-459808:1:exon
so has part: feature:459910-461003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:456970-457443:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:457625-457783:1:exon

position:457625:1
position: 457625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:458031-458218:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:458851-458945:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459151-459286:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:459743-459808:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:459910-461003:1:exon

Pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4 isoform X1
translation: MLLAATTMKQVHLSFSSCGFLGIYHLGAATVLSKRGRGLLCNVTGFAGASAGALVATVLLTAPERIEACTRFTFAFAEEVRMRALGPLTPGYDFMARLRGGIDEILPQHAHELAQERLHVSVTSAVDGQNYLVSNFTCRDNLITVLLASCFIPFYAGLKPMDCAGQLCVDGGLTNSLPVLPTGRTVTFSPFSGRADVSPRDLGWPGIYVRVAKQDVMVSHGVLVGCSVHGSGTVSVTHICMPYRMSYKHYVCFIIYVLCV
SIO_010081: Pnpla4
subclass of: SO_0000673
so part of: Pnpla4
location: join(457431..457443,458031..458218,458851..458945,459151..459286,459743..459808,459910..460194)
location: region:457431-460194:1
so has part: feature:457431-457443:1:exon
so has part: feature:458031-458218:1:exon
so has part: feature:458851-458945:1:exon
so has part: feature:459151-459286:1:exon
so has part: feature:459743-459808:1:exon
so has part: feature:459910-460194:1:exon

XP_032746218.1
type: Protein
SIO_000068: ncbiprotein

position:457431:1
position: 457431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:460194:1
position: 460194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:457431-457443:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:458031-458218:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:458851-458945:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:459151-459286:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459743-459808:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:459910-460194:1:exon

Pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4 isoform X2
translation: MKQVHLSFSSCGFLGIYHLGAATVLSKRGRGLLCNVTGFAGASAGALVATVLLTAPERIEACTRFTFAFAEEVRMRALGPLTPGYDFMARLRGGIDEILPQHAHELAQERLHVSVTSAVDGQNYLVSNFTCRDNLITVLLASCFIPFYAGLKPMDCAGQLCVDGGLTNSLPVLPTGRTVTFSPFSGRADVSPRDLGWPGIYVRVAKQDVMVSHGVLVGCSVHGSGTVSVTHICMPYRMSYKHYVCFIIYVLCV
SIO_010081: Pnpla4
subclass of: SO_0000673
so part of: Pnpla4
location: join(458039..458218,458851..458945,459151..459286,459743..459808,459910..460194)
location: region:458039-460194:1
so has part: feature:458039-458218:1:exon
so has part: feature:458851-458945:1:exon
so has part: feature:459151-459286:1:exon
so has part: feature:459743-459808:1:exon
so has part: feature:459910-460194:1:exon

XP_032746219.1
type: Protein
SIO_000068: ncbiprotein

position:458039:1
position: 458039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458039-458218:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:458851-458945:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:459151-459286:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:459743-459808:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459910-460194:1:exon

Pnpla4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Pnpla4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: patatin-like phospholipase domain-containing protein 4 isoform X2
translation: MKQVHLSFSSCGFLGIYHLGAATVLSKRGRGLLCNVTGFAGASAGALVATVLLTAPERIEACTRFTFAFAEEVRMRALGPLTPGYDFMARLRGGIDEILPQHAHELAQERLHVSVTSAVDGQNYLVSNFTCRDNLITVLLASCFIPFYAGLKPMDCAGQLCVDGGLTNSLPVLPTGRTVTFSPFSGRADVSPRDLGWPGIYVRVAKQDVMVSHGVLVGCSVHGSGTVSVTHICMPYRMSYKHYVCFIIYVLCV
SIO_010081: Pnpla4
subclass of: SO_0000673
so part of: Pnpla4
location: join(458039..458218,458851..458945,459151..459286,459743..459808,459910..460194)
location: region:458039-460194:1
so has part: feature:458039-458218:1:exon
so has part: feature:458851-458945:1:exon
so has part: feature:459151-459286:1:exon
so has part: feature:459743-459808:1:exon
so has part: feature:459910-460194:1:exon

XP_032746220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:458039-458218:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:458851-458945:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:459151-459286:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:459743-459808:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459910-460194:1:exon

LOC116888785
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888785
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 645622..646411
location: region:645622-646411:1
so has part: feature:645622-646411:1:exon
subclass of: SO_0000010

116888785
type: Gene
SIO_000068: ncbigene

position:645622:1
position: 645622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:646411:1
position: 646411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:645622-646411:1:exon

LOC116888785
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888785
product: spindlin-2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890067.1
SIO_010081: LOC116888785
subclass of: SO_0000673
so part of: LOC116888785
location: 645622..646411
location: region:645622-646411:1
so has part: feature:645622-646411:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:645622-646411:1:exon

LOC116888785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888785
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: spindlin-2-like
translation: MENETRNRRRAGQKRKMENETMNRRRAGQKRQRRRSPTPPRRNIVGCKISHEWKEGNESITHWKGTVVEQVPVNPSLYLVKYDGVDCVYGLELYKDKRVRSLKILSNNVASSQATDPSFADTIIGKAVEHVFEGEDGSKDEWKGIVLGQAPVLDANFYVTYENDPVLYMYQLLQDYREGDLRILEGFDEPPPLDLPVHVLSFLVGTCAEYTTDDGTKRVGMIIRQVEGKPSVFLVKFPDDVHIYVCSLVKIR
SIO_010081: LOC116888785
subclass of: SO_0000673
so part of: LOC116888785
location: 645642..646400
location: region:645642-646400:1
so has part: feature:645642-646400:1:exon

XP_032745958.1
type: Protein
SIO_000068: ncbiprotein

position:645642:1
position: 645642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:646400:1
position: 646400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:645642-646400:1:exon

LOC116889325
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889325
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(689377..689805)
location: region:689377-689805:-1
so has part: feature:689377-689805:-1:exon

116889325
type: Gene
SIO_000068: ncbigene

position:689377:-1
position: 689377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689805:-1
position: 689805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:689377-689805:-1:exon

LOC116889325
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889325
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
pseudo: true
SIO_010081: LOC116889325
subclass of: SO_0000673
so part of: LOC116889325
location: complement(689377..689805)
location: region:689377-689805:-1
so has part: feature:689377-689805:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:689377-689805:-1:exon

LOC116889363
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889363
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(760678..761970)
location: region:760678-761970:-1
so has part: feature:760678-761970:-1:exon
subclass of: SO_0000010

116889363
type: Gene
SIO_000068: ncbigene

position:760678:-1
position: 760678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:761970:-1
position: 761970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:760678-761970:-1:exon

LOC116889363
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889363
product: protein S-Myc
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 10 Proteins
transcript id: XM_032890470.1
SIO_010081: LOC116889363
subclass of: SO_0000673
so part of: LOC116889363
location: complement(760678..761970)
location: region:760678-761970:-1
so has part: feature:760678-761970:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:760678-761970:-1:exon

LOC116889363
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889363
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein S-Myc
translation: MLSCTTSTMPGMICKNSDLEFDSLKPCFYPEDDDIYFGGRNSTPPGEDIWKKFELLPTPRLSPGRALAEDSLEPANWATEMLLPEADLWSNPAEEEDIFGLKGLSGSSSNPVVLQDCMWSGFSSREKPETVVSEKLPGGCGSLAVGAGTLVPGAAAAASSAGQARSGTAGVGRRKAAWLTELSHLDSECVDPAVIFRANKRESMPVATIPASAGAAISLGDHQGLSSSLEDFLSNSGCVEEGGEEIYVVMLGETQFSKTVTKLPTAAHSENAALSPECAQSGELILKRSDLIQEQHNYAAPPLPYAEGARPLKKPRSQDPLGPLKCVLGPKAPRLRSRSNSDLEDIERRRNHNRLERQRRDIMRSSFLNLRDLVPELVHNEKAAKVVILKKATEYIHTLQADEYKLLVEREKLYKRKQQLLEKIKQSAVC
SIO_010081: LOC116889363
subclass of: SO_0000673
so part of: LOC116889363
location: complement(760678..761970)
location: region:760678-761970:-1
so has part: feature:760678-761970:-1:exon

XP_032746361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:760678-761970:-1:exon

LOC116888853
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888853
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 917726..919756
location: region:917726-919756:1
so has part: feature:917726-919756:1:exon
subclass of: SO_0000010

116888853
type: Gene
SIO_000068: ncbigene

position:917726:1
position: 917726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:919756:1
position: 919756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:917726-919756:1:exon

LOC116888853
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888853
product: germ cell-less protein-like 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 26 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890122.1
SIO_010081: LOC116888853
subclass of: SO_0000673
so part of: LOC116888853
location: 917726..919756
location: region:917726-919756:1
so has part: feature:917726-919756:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:917726-919756:1:exon

LOC116888853
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888853
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: germ cell-less protein-like 2
translation: MGLLNSRVLRSGDSSLVEPQPEATAGPSRESGSRKRKLSNSVNLGPSPDIHGPQNQGFSLLQVLNYIYRKRIKISSNYAYENLFLNGNDSDIKVCALGRTWCLHKVFLCHSGYFANILKDIWKESRNGVIRLLIRNEDIDTRSLHFVFGSLYTDENLSLTPLEVPRVLAAACLLRVDRVIRQCEKIMKTTINRNTACSYYLAAETYRLKAVKTECFQWLLYHLMIHPSVALYKAVDLKLMYLLTSSSQLLVMQKEIDVYITLKTWMFLYLNPSWNGTMKELLDHTNNWLYTYMGYIDNISFLESEEGLIFQPVFKKLRFQHIICDLASTSVLERDRLIPVEWLSPIYKQHWLTYLQAQEQKAIGPQTINEEELEQNTMRCGKMIPTDGRYIWKWLACKLSFPLCVIFTSHYIIFKQCFQQCDGSACLNHVRNFVFKLTLVCFDSNEKVTFSKTTGYKTLTFENNEEQIVMKLDPEALTFPLYIFANFLFLKLEDAENM
SIO_010081: LOC116888853
subclass of: SO_0000673
so part of: LOC116888853
location: 917885..919381
location: region:917885-919381:1
so has part: feature:917885-919381:1:exon

XP_032746013.1
type: Protein
SIO_000068: ncbiprotein

position:917885:1
position: 917885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:919381:1
position: 919381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:917885-919381:1:exon

LOC116888935
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888935
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1124931..1130887
location: region:1124931-1130887:1
so has part: feature:1124931-1130887:1:exon

116888935
type: Gene
SIO_000068: ncbigene

position:1124931:1
position: 1124931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1130887:1
position: 1130887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1124931-1130887:1:exon

LOC116888935
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888935
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888935
subclass of: SO_0000673
so part of: LOC116888935
location: 1124931..1125078
location: region:1124931-1125078:1
so has part: feature:1124931-1125078:1:exon

position:1125078:1
position: 1125078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1124931-1125078:1:exon

LOC116888935
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888935
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888935
subclass of: SO_0000673
so part of: LOC116888935
location: 1129959..1130887
location: region:1129959-1130887:1
so has part: feature:1129959-1130887:1:exon

position:1129959:1
position: 1129959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1129959-1130887:1:exon

LOC116888658
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1149342..1157550)
location: region:1149342-1157550:-1
so has part: feature:1149342-1157550:-1:exon
subclass of: SO_0000011

116888658
type: Gene
SIO_000068: ncbigene

position:1149342:-1
position: 1149342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1157550:-1
position: 1157550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1149342-1157550:-1:exon

LOC116888658
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888658
product: uncharacterized LOC116888658
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004386332.1
SIO_010081: LOC116888658
subclass of: SO_0000673
so part of: LOC116888658
location: complement(join(1149342..1149937,1154103..1154210,1157226..1157550))
location: region:1149342-1157550:-1
so has part: feature:1157226-1157550:-1:exon
so has part: feature:1154103-1154210:-1:exon
so has part: feature:1149342-1149937:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1157226-1157550:-1:exon

position:1157226:-1
position: 1157226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1154103-1154210:-1:exon

position:1154103:-1
position: 1154103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1154210:-1
position: 1154210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1149342-1149937:-1:exon

position:1149937:-1
position: 1149937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Rp2
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Rp2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1184467..1205808)
location: region:1184467-1205808:-1
so has part: feature:1184467-1205808:-1:exon
subclass of: SO_0000010

116888936
type: Gene
SIO_000068: ncbigene

position:1184467:-1
position: 1184467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1205808:-1
position: 1205808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1184467-1205808:-1:exon

Rp2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Rp2
product: RP2 activator of ARL3 GTPase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890174.1
SIO_010081: Rp2
subclass of: SO_0000673
so part of: Rp2
location: complement(join(1184467..1184636,1184979..1185064,1199585..1199699,1204339..1205004,1205668..1205808))
location: region:1184467-1205808:-1
so has part: feature:1205668-1205808:-1:exon
so has part: feature:1204339-1205004:-1:exon
so has part: feature:1199585-1199699:-1:exon
so has part: feature:1184979-1185064:-1:exon
so has part: feature:1184467-1184636:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1205668-1205808:-1:exon

position:1205668:-1
position: 1205668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1204339-1205004:-1:exon

position:1204339:-1
position: 1204339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1205004:-1
position: 1205004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1199585-1199699:-1:exon

position:1199585:-1
position: 1199585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1199699:-1
position: 1199699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1184979-1185064:-1:exon

position:1184979:-1
position: 1184979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1185064:-1
position: 1185064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1184467-1184636:-1:exon

position:1184636:-1
position: 1184636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Rp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Rp2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein XRP2
translation: MQRISFDFLVEFFAVVFETDFCSVALAGLECLSCNLPASASQVQGLEVDPKDYTFSGLKDETVGRLPGKVAGQQFVIQDCENCNIYIFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSTNIKFGCFQWYYPELAAQFKDAGLSIFNNIWSHVHDFTPVSGELNWSLLPENAVVQDYVPLPTTEEFKAVRISTDPNRSIVPVSRGQRQKYSDESCLVVLFADDYTTANARKLIDEMVGKGFSLVQTKEMSMKTEDAQRVFREKASDFLLLLNKGPVIALEFNGDDAVQECHLIVNGLFNGTKMFVSEKKETASGDVDSFYNFAEIQMGI
SIO_010081: Rp2
subclass of: SO_0000673
so part of: Rp2
location: complement(join(1184553..1184636,1184979..1185064,1199585..1199699,1204339..1205004,1205668..1205808))
location: region:1184553-1205808:-1
so has part: feature:1205668-1205808:-1:exon
so has part: feature:1204339-1205004:-1:exon
so has part: feature:1199585-1199699:-1:exon
so has part: feature:1184979-1185064:-1:exon
so has part: feature:1184553-1184636:-1:exon

XP_032746065.1
type: Protein
SIO_000068: ncbiprotein

position:1184553:-1
position: 1184553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1205668-1205808:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1204339-1205004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1199585-1199699:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1184979-1185064:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1184553-1184636:-1:exon

LOC116889273
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889273
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1241837..1242580
location: region:1241837-1242580:1
so has part: feature:1241837-1242580:1:exon

116889273
type: Gene
SIO_000068: ncbigene

position:1241837:1
position: 1241837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1242580:1
position: 1242580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1241837-1242580:1:exon

LOC116889273
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889273
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889273
subclass of: SO_0000673
so part of: LOC116889273
location: 1241837..1242580
location: region:1241837-1242580:1
so has part: feature:1241837-1242580:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1241837-1242580:1:exon

LOC116889105
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889105
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1248889..1250030)
location: region:1248889-1250030:-1
so has part: feature:1248889-1250030:-1:exon

116889105
type: Gene
SIO_000068: ncbigene

position:1248889:-1
position: 1248889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1250030:-1
position: 1250030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1248889-1250030:-1:exon

LOC116889105
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889105
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889105
subclass of: SO_0000673
so part of: LOC116889105
location: complement(1248889..1250030)
location: region:1248889-1250030:-1
so has part: feature:1248889-1250030:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1248889-1250030:-1:exon

LOC116888656
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888656
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1277891..1278623)
location: region:1277891-1278623:-1
so has part: feature:1277891-1278623:-1:exon
subclass of: SO_0000010

116888656
type: Gene
SIO_000068: ncbigene

position:1277891:-1
position: 1277891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1278623:-1
position: 1278623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1277891-1278623:-1:exon

LOC116888656
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888656
product: gamma-aminobutyric acid receptor-associated protein-like 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889950.1
SIO_010081: LOC116888656
subclass of: SO_0000673
so part of: LOC116888656
location: complement(1277891..1278623)
location: region:1277891-1278623:-1
so has part: feature:1277891-1278623:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1277891-1278623:-1:exon

LOC116888656
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888656
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor-associated protein-like 2
translation: MKWMFKEDHSLEHRCVESTKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKMIQLPSEKAIFLFVDKTIPQSSLTMGQLYEKEKDEDGFLYVAYGGENTFGF
SIO_010081: LOC116888656
subclass of: SO_0000673
so part of: LOC116888656
location: complement(1278267..1278620)
location: region:1278267-1278620:-1
so has part: feature:1278267-1278620:-1:exon

XP_032745841.1
type: Protein
SIO_000068: ncbiprotein

position:1278267:-1
position: 1278267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1278620:-1
position: 1278620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278267-1278620:-1:exon

LOC116889272
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889272
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1294394..1304714)
location: region:1294394-1304714:-1
so has part: feature:1294394-1304714:-1:exon
subclass of: SO_0000010

116889272
type: Gene
SIO_000068: ncbigene

position:1294394:-1
position: 1294394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1304714:-1
position: 1304714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1294394-1304714:-1:exon

LOC116889272
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889272
product: protein Jade-3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_032890415.1
SIO_010081: LOC116889272
subclass of: SO_0000673
so part of: LOC116889272
location: complement(join(1294394..1295265,1298249..1298416,1304386..1304714))
location: region:1294394-1304714:-1
so has part: feature:1304386-1304714:-1:exon
so has part: feature:1298249-1298416:-1:exon
so has part: feature:1294394-1295265:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1304386-1304714:-1:exon

position:1304386:-1
position: 1304386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1298249-1298416:-1:exon

position:1298249:-1
position: 1298249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1298416:-1
position: 1298416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1294394-1295265:-1:exon

position:1295265:-1
position: 1295265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116889272
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889272
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Jade-3-like
translation: MEKTIEVLERHCHENMNHAIETVEGLGIEYDEDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACYGILKIPEGSWLCRSCVLGIYPQCVLCPKKGGAMKTTRTGTKWAHVSCALWIPEVSIACPERMEPVTKISHIPPSRWALVCNLCKLKTGACIQVSTLRIGGMN
SIO_010081: LOC116889272
subclass of: SO_0000673
so part of: LOC116889272
location: complement(join(1295116..1295265,1298249..1298416,1304386..1304571))
location: region:1295116-1304571:-1
so has part: feature:1304386-1304571:-1:exon
so has part: feature:1298249-1298416:-1:exon
so has part: feature:1295116-1295265:-1:exon

XP_032746306.1
type: Protein
SIO_000068: ncbiprotein

position:1295116:-1
position: 1295116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1304571:-1
position: 1304571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1304386-1304571:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1298249-1298416:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1295116-1295265:-1:exon

LOC116888937
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888937
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1589812..1596038)
location: region:1589812-1596038:-1
so has part: feature:1589812-1596038:-1:exon

116888937
type: Gene
SIO_000068: ncbigene

position:1589812:-1
position: 1589812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1596038:-1
position: 1596038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1589812-1596038:-1:exon

LOC116888937
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888937
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888937
subclass of: SO_0000673
so part of: LOC116888937
location: complement(1589812..1590718)
location: region:1589812-1590718:-1
so has part: feature:1589812-1590718:-1:exon

position:1590718:-1
position: 1590718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1589812-1590718:-1:exon

LOC116888937
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888937
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888937
subclass of: SO_0000673
so part of: LOC116888937
location: complement(1590898..1591551)
location: region:1590898-1591551:-1
so has part: feature:1590898-1591551:-1:exon

position:1590898:-1
position: 1590898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1591551:-1
position: 1591551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1590898-1591551:-1:exon

LOC116888937
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888937
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888937
subclass of: SO_0000673
so part of: LOC116888937
location: complement(1595921..1596038)
location: region:1595921-1596038:-1
so has part: feature:1595921-1596038:-1:exon

position:1595921:-1
position: 1595921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1595921-1596038:-1:exon

LOC116889145
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889145
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1635605..1636681
location: region:1635605-1636681:1
so has part: feature:1635605-1636681:1:exon

116889145
type: Gene
SIO_000068: ncbigene

position:1635605:1
position: 1635605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1636681:1
position: 1636681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1635605-1636681:1:exon

LOC116889145
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889145
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 15 Proteins
pseudo: true
SIO_010081: LOC116889145
subclass of: SO_0000673
so part of: LOC116889145
location: 1635605..1636681
location: region:1635605-1636681:1
so has part: feature:1635605-1636681:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1635605-1636681:1:exon

LOC116888938
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888938
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1865239..1868103)
location: region:1865239-1868103:-1
so has part: feature:1865239-1868103:-1:exon

116888938
type: Gene
SIO_000068: ncbigene

position:1865239:-1
position: 1865239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1868103:-1
position: 1868103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1865239-1868103:-1:exon

LOC116888938
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888938
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116888938
subclass of: SO_0000673
so part of: LOC116888938
location: complement(1865239..1865773)
location: region:1865239-1865773:-1
so has part: feature:1865239-1865773:-1:exon

position:1865773:-1
position: 1865773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1865239-1865773:-1:exon

LOC116888938
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888938
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116888938
subclass of: SO_0000673
so part of: LOC116888938
location: complement(1867229..1867350)
location: region:1867229-1867350:-1
so has part: feature:1867229-1867350:-1:exon

position:1867229:-1
position: 1867229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1867350:-1
position: 1867350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1867229-1867350:-1:exon

LOC116888938
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888938
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC116888938
subclass of: SO_0000673
so part of: LOC116888938
location: complement(1868047..1868103)
location: region:1868047-1868103:-1
so has part: feature:1868047-1868103:-1:exon

position:1868047:-1
position: 1868047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1868047-1868103:-1:exon

Dipk2b
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Dipk2b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1985732..2044584
location: region:1985732-2044584:1
so has part: feature:1985732-2044584:1:exon
subclass of: SO_0000010

116888939
type: Gene
SIO_000068: ncbigene

position:1985732:1
position: 1985732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2044584:1
position: 2044584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1985732-2044584:1:exon

Dipk2b
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Dipk2b
product: divergent protein kinase domain 2B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890176.1
SIO_010081: Dipk2b
subclass of: SO_0000673
so part of: Dipk2b
location: join(1985732..1985774,1992488..1992773,2002205..2002469,2039486..2039659,2042825..2043113,2044244..2044584)
location: region:1985732-2044584:1
so has part: feature:1985732-1985774:1:exon
so has part: feature:1992488-1992773:1:exon
so has part: feature:2002205-2002469:1:exon
so has part: feature:2039486-2039659:1:exon
so has part: feature:2042825-2043113:1:exon
so has part: feature:2044244-2044584:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1985732-1985774:1:exon

position:1985774:1
position: 1985774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1992488-1992773:1:exon

position:1992488:1
position: 1992488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1992773:1
position: 1992773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2002205-2002469:1:exon

position:2002205:1
position: 2002205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2002469:1
position: 2002469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2039486-2039659:1:exon

position:2039486:1
position: 2039486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2039659:1
position: 2039659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2042825-2043113:1:exon

position:2042825:1
position: 2042825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2043113:1
position: 2043113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2044244-2044584:1:exon

position:2044244:1
position: 2044244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Dipk2b
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Dipk2b
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: divergent protein kinase domain 2B
translation: MPSGVQYQVEEAGKALSCTAGLPRLQSKAQNGVRGDQAAATAFHQRWPAWILLWVSTLSCSFSLPASLPPSLVPRVRSSYTLGKTFLGLDKCNACIGTSICKKFFKEEIRLDNSLVSHLGLPSQDLLSYAANYSDDSKTWRPVEISRLVSKYQSEISDRRICASASGPKTCSIERILRKTGRFQKWLQAKRLTPDLVQGLPSPFLHCPSQRLLDRVVRRYAEVVDAGSIFMDHFTDRDKLRLLYTLAVNAHPIILQIFPGAEGWPMPKYLGSCGRFLVSTSTRPLQEFYDAPPEQAADIAYQLLGVLESLRSNDLNYFFYFTHVDAGMFGIFDNGHLFIRDASALGIIDKQEASQAADRTGENEDIFTCLVSGCQVQMSSCDTVPEKQNLVLVCQQLLPQLLQGKFPFPVQQEIDSALSLCSKDASTNLEVFGATSLLKNILRSLRTCDPRFAYRYPDCKYNDRF
SIO_010081: Dipk2b
subclass of: SO_0000673
so part of: Dipk2b
location: join(1985732..1985774,1992488..1992773,2002205..2002469,2039486..2039659,2042825..2043113,2044244..2044584)
location: region:1985732-2044584:1
so has part: feature:1985732-1985774:1:exon
so has part: feature:1992488-1992773:1:exon
so has part: feature:2002205-2002469:1:exon
so has part: feature:2039486-2039659:1:exon
so has part: feature:2042825-2043113:1:exon
so has part: feature:2044244-2044584:1:exon

XP_032746067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1985732-1985774:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1992488-1992773:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2002205-2002469:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2039486-2039659:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2042825-2043113:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2044244-2044584:1:exon

LOC116888873
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2147551..2165130)
location: region:2147551-2165130:-1
so has part: feature:2147551-2165130:-1:exon
subclass of: SO_0000010

116888873
type: Gene
SIO_000068: ncbigene

position:2147551:-1
position: 2147551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2165130:-1
position: 2165130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2147551-2165130:-1:exon

LOC116888873
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888873
product: lysine-specific demethylase 6A-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_032890137.1
SIO_010081: LOC116888873
subclass of: SO_0000673
so part of: LOC116888873
location: complement(join(2147551..2149753,2150831..2151018,2153227..2153353,2160859..2161000,2161909..2162096,2164957..2165130))
location: region:2147551-2165130:-1
so has part: feature:2164957-2165130:-1:exon
so has part: feature:2161909-2162096:-1:exon
so has part: feature:2160859-2161000:-1:exon
so has part: feature:2153227-2153353:-1:exon
so has part: feature:2150831-2151018:-1:exon
so has part: feature:2147551-2149753:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2164957-2165130:-1:exon

position:2164957:-1
position: 2164957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2161909-2162096:-1:exon

position:2161909:-1
position: 2161909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2162096:-1
position: 2162096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2160859-2161000:-1:exon

position:2160859:-1
position: 2160859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2161000:-1
position: 2161000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2153227-2153353:-1:exon

position:2153227:-1
position: 2153227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2153353:-1
position: 2153353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2150831-2151018:-1:exon

position:2150831:-1
position: 2150831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2151018:-1
position: 2151018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2147551-2149753:-1:exon

position:2149753:-1
position: 2149753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888873
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888873
product: lysine-specific demethylase 6A-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 ESTs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032890138.1
SIO_010081: LOC116888873
subclass of: SO_0000673
so part of: LOC116888873
location: complement(join(2147551..2149753,2150848..2151018,2153227..2153353,2160859..2161000,2161909..2162096,2164957..2165122))
location: region:2147551-2165122:-1
so has part: feature:2164957-2165122:-1:exon
so has part: feature:2161909-2162096:-1:exon
so has part: feature:2160859-2161000:-1:exon
so has part: feature:2153227-2153353:-1:exon
so has part: feature:2150848-2151018:-1:exon
so has part: feature:2147551-2149753:-1:exon

position:2165122:-1
position: 2165122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2164957-2165122:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2161909-2162096:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2160859-2161000:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2153227-2153353:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2150848-2151018:-1:exon

position:2150848:-1
position: 2150848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2147551-2149753:-1:exon

LOC116888873
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysine-specific demethylase 6A-like isoform X1
translation: MGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMVKYCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYDQFTLVSEINMLLRYHPPHLDIVPWTLNMRPFLLFRK
SIO_010081: LOC116888873
subclass of: SO_0000673
so part of: LOC116888873
location: complement(join(2149672..2149753,2150831..2151018,2153227..2153353,2160859..2161000,2161909..2162077))
location: region:2149672-2162077:-1
so has part: feature:2161909-2162077:-1:exon
so has part: feature:2160859-2161000:-1:exon
so has part: feature:2153227-2153353:-1:exon
so has part: feature:2150831-2151018:-1:exon
so has part: feature:2149672-2149753:-1:exon

XP_032746028.1
type: Protein
SIO_000068: ncbiprotein

position:2149672:-1
position: 2149672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2162077:-1
position: 2162077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2161909-2162077:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2160859-2161000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2153227-2153353:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2150831-2151018:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2149672-2149753:-1:exon

LOC116888873
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysine-specific demethylase 6A-like isoform X2
translation: MGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMVKYCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYDQFTLAPPLPSASS
SIO_010081: LOC116888873
subclass of: SO_0000673
so part of: LOC116888873
location: complement(join(2149724..2149753,2150848..2151018,2153227..2153353,2160859..2161000,2161909..2162077))
location: region:2149724-2162077:-1
so has part: feature:2161909-2162077:-1:exon
so has part: feature:2160859-2161000:-1:exon
so has part: feature:2153227-2153353:-1:exon
so has part: feature:2150848-2151018:-1:exon
so has part: feature:2149724-2149753:-1:exon

XP_032746029.1
type: Protein
SIO_000068: ncbiprotein

position:2149724:-1
position: 2149724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2161909-2162077:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2160859-2161000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2153227-2153353:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2150848-2151018:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2149724-2149753:-1:exon

LOC116888872
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888872
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2169524..2288199)
location: region:2169524-2288199:-1
so has part: feature:2169524-2288199:-1:exon
subclass of: SO_0000010

116888872
type: Gene
SIO_000068: ncbigene

position:2169524:-1
position: 2169524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2288199:-1
position: 2288199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2169524-2288199:-1:exon

LOC116888872
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888872
product: lysine-specific demethylase 6A-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_032890136.1
SIO_010081: LOC116888872
subclass of: SO_0000673
so part of: LOC116888872
location: complement(join(2169524..2169688,2171181..2171245,2172915..2173118,2173690..2173795,2176163..2176292,2181778..2182557,2185435..2185830,2186679..2186780,2188258..2188353,2190186..2190405,2190542..2190640,2194836..2194962,2198102..2198195,2200560..2200594,2203468..2203522,2215151..2215271,2224459..2224517,2231339..2231388,2237488..2237596,2287389..2287452,2287664..2288199))
location: region:2169524-2288199:-1
so has part: feature:2287664-2288199:-1:exon
so has part: feature:2287389-2287452:-1:exon
so has part: feature:2237488-2237596:-1:exon
so has part: feature:2231339-2231388:-1:exon
so has part: feature:2224459-2224517:-1:exon
so has part: feature:2215151-2215271:-1:exon
so has part: feature:2203468-2203522:-1:exon
so has part: feature:2200560-2200594:-1:exon
so has part: feature:2198102-2198195:-1:exon
so has part: feature:2194836-2194962:-1:exon
so has part: feature:2190542-2190640:-1:exon
so has part: feature:2190186-2190405:-1:exon
so has part: feature:2188258-2188353:-1:exon
so has part: feature:2186679-2186780:-1:exon
so has part: feature:2185435-2185830:-1:exon
so has part: feature:2181778-2182557:-1:exon
so has part: feature:2176163-2176292:-1:exon
so has part: feature:2173690-2173795:-1:exon
so has part: feature:2172915-2173118:-1:exon
so has part: feature:2171181-2171245:-1:exon
so has part: feature:2169524-2169688:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2287664-2288199:-1:exon

position:2287664:-1
position: 2287664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2287389-2287452:-1:exon

position:2287389:-1
position: 2287389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2287452:-1
position: 2287452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2237488-2237596:-1:exon

position:2237488:-1
position: 2237488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2237596:-1
position: 2237596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2231339-2231388:-1:exon

position:2231339:-1
position: 2231339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2231388:-1
position: 2231388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2224459-2224517:-1:exon

position:2224459:-1
position: 2224459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2224517:-1
position: 2224517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2215151-2215271:-1:exon

position:2215151:-1
position: 2215151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2215271:-1
position: 2215271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2203468-2203522:-1:exon

position:2203468:-1
position: 2203468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2203522:-1
position: 2203522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2200560-2200594:-1:exon

position:2200560:-1
position: 2200560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2200594:-1
position: 2200594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2198102-2198195:-1:exon

position:2198102:-1
position: 2198102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2198195:-1
position: 2198195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2194836-2194962:-1:exon

position:2194836:-1
position: 2194836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2194962:-1
position: 2194962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2190542-2190640:-1:exon

position:2190542:-1
position: 2190542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2190640:-1
position: 2190640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2190186-2190405:-1:exon

position:2190186:-1
position: 2190186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2190405:-1
position: 2190405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2188258-2188353:-1:exon

position:2188258:-1
position: 2188258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2188353:-1
position: 2188353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2186679-2186780:-1:exon

position:2186679:-1
position: 2186679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2186780:-1
position: 2186780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2185435-2185830:-1:exon

position:2185435:-1
position: 2185435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2185830:-1
position: 2185830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2181778-2182557:-1:exon

position:2181778:-1
position: 2181778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2182557:-1
position: 2182557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2176163-2176292:-1:exon

position:2176163:-1
position: 2176163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2176292:-1
position: 2176292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2173690-2173795:-1:exon

position:2173690:-1
position: 2173690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2173795:-1
position: 2173795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2172915-2173118:-1:exon

position:2172915:-1
position: 2172915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2173118:-1
position: 2173118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2171181-2171245:-1:exon

position:2171181:-1
position: 2171181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2171245:-1
position: 2171245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2169524-2169688:-1:exon

position:2169688:-1
position: 2169688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888872
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888872
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: lysine-specific demethylase 6A-like
translation: MKSCGVSLATAAAAAAFGDEEKKMAAGKASGESEEASLSLTAEEREALGGLDSRLFGFVRFHEDGARMKALLGKAVRCYESLILKAEGKVESDFFCQLGHFNLLLEEYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALVDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQIENLSAQVKATVLQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGHAAAWMDLGTLYESCNQPQDAIKCYLNATRSKNCSNTSGLAARIKYLQNTSDNWSGGNAVPHPPVQQQTHSWCLTPQKLQHLEQLRANRNNLNPAQKLMLEQLESQFVLMQQHQMRQTGVAQVRPTGIPNGPTADSSLPTNSASGQQPQLPLTRMPSVSQPGVHPACPRQALANGPFSAGHVPCSTSRTLGSTDTILIGNNHVTGSGSNGNVPYLQRNAPTLPHNRTNLTSSTEEPWKNQLSNSTQGLHKGQSSHLAGPNGERPLSSTGPSQHLQAAGSGIQNQNGHPTLPSNSVTQGAALNHLSSHTATSGGQQGITLTKESKPSGNTLTVPETNRQTGETPNSTASVEGLPNHVHQVMADAVCSPSHGDSKSPGLLSSDNPQLSALLMGKANNNVGPGTCDIVNNIHPTVHTKTDNSVASSPSSAISTATPSPKSTEQTTTNSVTSLNSPHSGLHTINGEGMEESQSPIKTDLLLVSHRPSPQIIPSMSVSIYPSSAEVLKACRNLGKNGLSNSSILLDKCPPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPNNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVXTQLLQPVDXNWDPTGTKKIWHCESNRSHTTIAKYAQYQASSFQESLREENEKRSHHKDLSDSESTSSDNSGKRRKGPFKTIKFGTNIDLSDDKK
SIO_010081: LOC116888872
subclass of: SO_0000673
so part of: LOC116888872
location: complement(join(2169610..2169688,2171181..2171245,2172915..2173118,2173690..2173795,2176163..2176292,2181778..2182557,2185435..2185830,2186679..2186780,2188258..2188353,2190186..2190405,2190542..2190640,2194836..2194962,2198102..2198195,2200560..2200594,2203468..2203522,2215151..2215271,2224459..2224517,2231339..2231388,2237488..2237596,2287389..2287452,2287664..2287821))
location: region:2169610-2287821:-1
so has part: feature:2287664-2287821:-1:exon
so has part: feature:2287389-2287452:-1:exon
so has part: feature:2237488-2237596:-1:exon
so has part: feature:2231339-2231388:-1:exon
so has part: feature:2224459-2224517:-1:exon
so has part: feature:2215151-2215271:-1:exon
so has part: feature:2203468-2203522:-1:exon
so has part: feature:2200560-2200594:-1:exon
so has part: feature:2198102-2198195:-1:exon
so has part: feature:2194836-2194962:-1:exon
so has part: feature:2190542-2190640:-1:exon
so has part: feature:2190186-2190405:-1:exon
so has part: feature:2188258-2188353:-1:exon
so has part: feature:2186679-2186780:-1:exon
so has part: feature:2185435-2185830:-1:exon
so has part: feature:2181778-2182557:-1:exon
so has part: feature:2176163-2176292:-1:exon
so has part: feature:2173690-2173795:-1:exon
so has part: feature:2172915-2173118:-1:exon
so has part: feature:2171181-2171245:-1:exon
so has part: feature:2169610-2169688:-1:exon

XP_032746027.1
type: Protein
SIO_000068: ncbiprotein

position:2169610:-1
position: 2169610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2287821:-1
position: 2287821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2287664-2287821:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2287389-2287452:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2237488-2237596:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2231339-2231388:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2224459-2224517:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2215151-2215271:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2203468-2203522:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2200560-2200594:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2198102-2198195:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2194836-2194962:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2190542-2190640:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2190186-2190405:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2188258-2188353:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2186679-2186780:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2185435-2185830:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2181778-2182557:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2176163-2176292:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2173690-2173795:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2172915-2173118:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2171181-2171245:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2169610-2169688:-1:exon

LOC116888230
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2299122..2299965)
location: region:2299122-2299965:-1
so has part: feature:2299122-2299965:-1:exon
subclass of: SO_0000010

116888230
type: Gene
SIO_000068: ncbigene

position:2299122:-1
position: 2299122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2299965:-1
position: 2299965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2299122-2299965:-1:exon

LOC116888230
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888230
product: dual specificity phosphatase 21
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins
transcript id: XM_032889517.1
SIO_010081: LOC116888230
subclass of: SO_0000673
so part of: LOC116888230
location: complement(2299122..2299965)
location: region:2299122-2299965:-1
so has part: feature:2299122-2299965:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2299122-2299965:-1:exon

LOC116888230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dual specificity phosphatase 21
translation: MTAASCILPSQAIQQDNIYGLSQITTSLFISNSAVANDKLTLSNNHITTIINASVEVVNTFFEDIQYVHVPVSDAPNSYLYDFFDPIADHIHGVEMRNGRTLLHCAAGVSRSAALCLAYLMKYHTMTLLDAHRWTKSCRPIIRPNNGFWEQLIHYEFKLFSRNTVHMIYSPMGLIPNIYEKDAYLMELM
SIO_010081: LOC116888230
subclass of: SO_0000673
so part of: LOC116888230
location: complement(2299285..2299854)
location: region:2299285-2299854:-1
so has part: feature:2299285-2299854:-1:exon

XP_032745408.1
type: Protein
SIO_000068: ncbiprotein

position:2299285:-1
position: 2299285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2299854:-1
position: 2299854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2299285-2299854:-1:exon

LOC116888941
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888941
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2573765..2578249
location: region:2573765-2578249:1
so has part: feature:2573765-2578249:1:exon

116888941
type: Gene
SIO_000068: ncbigene

position:2573765:1
position: 2573765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2578249:1
position: 2578249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2573765-2578249:1:exon

LOC116888941
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888941
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
pseudo: true
SIO_010081: LOC116888941
subclass of: SO_0000673
so part of: LOC116888941
location: 2573765..2573926
location: region:2573765-2573926:1
so has part: feature:2573765-2573926:1:exon

position:2573926:1
position: 2573926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2573765-2573926:1:exon

LOC116888941
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888941
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
pseudo: true
SIO_010081: LOC116888941
subclass of: SO_0000673
so part of: LOC116888941
location: 2576001..2576088
location: region:2576001-2576088:1
so has part: feature:2576001-2576088:1:exon

position:2576001:1
position: 2576001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2576088:1
position: 2576088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2576001-2576088:1:exon

LOC116888941
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888941
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
pseudo: true
SIO_010081: LOC116888941
subclass of: SO_0000673
so part of: LOC116888941
location: 2577664..2578249
location: region:2577664-2578249:1
so has part: feature:2577664-2578249:1:exon

position:2577664:1
position: 2577664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2577664-2578249:1:exon

LOC116888543
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888543
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2617229..2617939)
location: region:2617229-2617939:-1
so has part: feature:2617229-2617939:-1:exon

116888543
type: Gene
SIO_000068: ncbigene

position:2617229:-1
position: 2617229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2617939:-1
position: 2617939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2617229-2617939:-1:exon

LOC116888543
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888543
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888543
subclass of: SO_0000673
so part of: LOC116888543
location: complement(2617229..2617939)
location: region:2617229-2617939:-1
so has part: feature:2617229-2617939:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2617229-2617939:-1:exon

LOC116888637
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888637
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2674120..2674573)
location: region:2674120-2674573:-1
so has part: feature:2674120-2674573:-1:exon

116888637
type: Gene
SIO_000068: ncbigene

position:2674120:-1
position: 2674120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2674573:-1
position: 2674573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2674120-2674573:-1:exon

LOC116888637
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888637
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888637
subclass of: SO_0000673
so part of: LOC116888637
location: complement(2674120..2674573)
location: region:2674120-2674573:-1
so has part: feature:2674120-2674573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2674120-2674573:-1:exon

Araf
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Araf
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2703479..2767908
location: region:2703479-2767908:1
so has part: feature:2703479-2767908:1:exon
subclass of: SO_0000010

116889396
type: Gene
SIO_000068: ncbigene

position:2703479:1
position: 2703479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767908:1
position: 2767908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2703479-2767908:1:exon

Araf
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Araf
product: A-Raf proto-oncogene, serine/threonine kinase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 ESTs, 36 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_032890500.1
SIO_010081: Araf
subclass of: SO_0000673
so part of: Araf
location: join(2703479..2703565,2757532..2757687,2757860..2757963,2758969..2759071,2759158..2759312,2759430..2759528,2760820..2760961,2761060..2761087,2761178..2761317,2761414..2761616,2764977..2765153,2765243..2765289,2765774..2765892,2766123..2766254,2767072..2767206,2767372..2767908)
location: region:2703479-2767908:1
so has part: feature:2703479-2703565:1:exon
so has part: feature:2757532-2757687:1:exon
so has part: feature:2757860-2757963:1:exon
so has part: feature:2758969-2759071:1:exon
so has part: feature:2759158-2759312:1:exon
so has part: feature:2759430-2759528:1:exon
so has part: feature:2760820-2760961:1:exon
so has part: feature:2761060-2761087:1:exon
so has part: feature:2761178-2761317:1:exon
so has part: feature:2761414-2761616:1:exon
so has part: feature:2764977-2765153:1:exon
so has part: feature:2765243-2765289:1:exon
so has part: feature:2765774-2765892:1:exon
so has part: feature:2766123-2766254:1:exon
so has part: feature:2767072-2767206:1:exon
so has part: feature:2767372-2767908:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2703479-2703565:1:exon

position:2703565:1
position: 2703565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2757532-2757687:1:exon

position:2757532:1
position: 2757532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2757687:1
position: 2757687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2757860-2757963:1:exon

position:2757860:1
position: 2757860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2757963:1
position: 2757963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2758969-2759071:1:exon

position:2758969:1
position: 2758969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759071:1
position: 2759071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2759158-2759312:1:exon

position:2759158:1
position: 2759158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759312:1
position: 2759312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2759430-2759528:1:exon

position:2759430:1
position: 2759430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759528:1
position: 2759528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2760820-2760961:1:exon

position:2760820:1
position: 2760820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2760961:1
position: 2760961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2761060-2761087:1:exon

position:2761060:1
position: 2761060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2761087:1
position: 2761087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2761178-2761317:1:exon

position:2761178:1
position: 2761178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2761317:1
position: 2761317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2761414-2761616:1:exon

position:2761414:1
position: 2761414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2761616:1
position: 2761616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2764977-2765153:1:exon

position:2764977:1
position: 2764977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2765153:1
position: 2765153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2765243-2765289:1:exon

position:2765243:1
position: 2765243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2765289:1
position: 2765289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2765774-2765892:1:exon

position:2765774:1
position: 2765774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2765892:1
position: 2765892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2766123-2766254:1:exon

position:2766123:1
position: 2766123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2766254:1
position: 2766254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2767072-2767206:1:exon

position:2767072:1
position: 2767072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767206:1
position: 2767206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2767372-2767908:1:exon

position:2767372:1
position: 2767372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Araf
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Araf
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:2761465..2761467,aa:OTHER)
product: LOW QUALITY PROTEIN: serine/threonine-protein kinase A-Raf
translation: MASPQDQGAPLPLMPDKEAYGTCPVLPQPILKKSLDNMEPPRGPPASGAEPSRAVGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVLEDVPLTMHNFVRKTFFSLAFCDFCLKFLFHGFRCQTCGYKFHQHCSSKVPTVCVDMSTNRRQFYHSIQDLSGGSRQQEVPSNLSVNELLTPQGPSPFTQQRDQEHFSFPAPANPPLQRIRSTSTPNVHMVSTTAPMDSSLMQFTAQSFSTDAAGRGGDGAPRGSPSPASVSSGRKSPHSKLPAEQRERKSLADEKKKVKNLGYRDSGYYWEVPPSXVQLLKRIGTGSFGTVFRGRWHGDVAVKVLKVAQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIITQWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYELMTGSLPYSHIGSRDQIIFMVGRGYLSPDLSKIFSNCPKAMRRLLTDCLKFQREERPLFPQILATIELLQRSLPKIERSASEPSLHRTQADELPACLLSAARLVP
SIO_010081: Araf
subclass of: SO_0000673
so part of: Araf
location: join(2703515..2703565,2757532..2757687,2757860..2757963,2758969..2759071,2759158..2759312,2759430..2759528,2760820..2760961,2761060..2761087,2761178..2761317,2761414..2761616,2764977..2765153,2765243..2765289,2765774..2765892,2766123..2766254,2767072..2767206,2767372..2767506)
location: region:2703515-2767506:1
so has part: feature:2703515-2703565:1:exon
so has part: feature:2757532-2757687:1:exon
so has part: feature:2757860-2757963:1:exon
so has part: feature:2758969-2759071:1:exon
so has part: feature:2759158-2759312:1:exon
so has part: feature:2759430-2759528:1:exon
so has part: feature:2760820-2760961:1:exon
so has part: feature:2761060-2761087:1:exon
so has part: feature:2761178-2761317:1:exon
so has part: feature:2761414-2761616:1:exon
so has part: feature:2764977-2765153:1:exon
so has part: feature:2765243-2765289:1:exon
so has part: feature:2765774-2765892:1:exon
so has part: feature:2766123-2766254:1:exon
so has part: feature:2767072-2767206:1:exon
so has part: feature:2767372-2767506:1:exon

XP_032746391.1
type: Protein
SIO_000068: ncbiprotein

position:2703515:1
position: 2703515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767506:1
position: 2767506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2703515-2703565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2757532-2757687:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2757860-2757963:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2758969-2759071:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2759158-2759312:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2759430-2759528:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2760820-2760961:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2761060-2761087:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2761178-2761317:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2761414-2761616:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2764977-2765153:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2765243-2765289:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2765774-2765892:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2766123-2766254:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2767072-2767206:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2767372-2767506:1:exon

LOC116888383
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888383
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2731667..2732246
location: region:2731667-2732246:1
so has part: feature:2731667-2732246:1:exon

116888383
type: Gene
SIO_000068: ncbigene

position:2731667:1
position: 2731667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2732246:1
position: 2732246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2731667-2732246:1:exon

LOC116888383
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888383
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888383
subclass of: SO_0000673
so part of: LOC116888383
location: 2731667..2732246
location: region:2731667-2732246:1
so has part: feature:2731667-2732246:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2731667-2732246:1:exon

Syn1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Syn1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2767903..2822748)
location: region:2767903-2822748:-1
so has part: feature:2767903-2822748:-1:exon
subclass of: SO_0000010

116889395
type: Gene
SIO_000068: ncbigene

position:2767903:-1
position: 2767903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2822748:-1
position: 2822748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2767903-2822748:-1:exon

Syn1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Syn1
product: synapsin I
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 ESTs, 18 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_032890499.1
SIO_010081: Syn1
subclass of: SO_0000673
so part of: Syn1
location: complement(join(2767903..2768988,2769894..2770485,2770570..2770657,2770973..2771113,2772172..2772274,2772369..2772443,2772526..2772668,2773506..2773566,2808472..2808561,2809416..2809572,2810793..2810884,2810975..2811032,2822159..2822748))
location: region:2767903-2822748:-1
so has part: feature:2822159-2822748:-1:exon
so has part: feature:2810975-2811032:-1:exon
so has part: feature:2810793-2810884:-1:exon
so has part: feature:2809416-2809572:-1:exon
so has part: feature:2808472-2808561:-1:exon
so has part: feature:2773506-2773566:-1:exon
so has part: feature:2772526-2772668:-1:exon
so has part: feature:2772369-2772443:-1:exon
so has part: feature:2772172-2772274:-1:exon
so has part: feature:2770973-2771113:-1:exon
so has part: feature:2770570-2770657:-1:exon
so has part: feature:2769894-2770485:-1:exon
so has part: feature:2767903-2768988:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2822159-2822748:-1:exon

position:2822159:-1
position: 2822159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2810975-2811032:-1:exon

position:2810975:-1
position: 2810975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2811032:-1
position: 2811032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2810793-2810884:-1:exon

position:2810793:-1
position: 2810793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2810884:-1
position: 2810884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2809416-2809572:-1:exon

position:2809416:-1
position: 2809416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2809572:-1
position: 2809572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2808472-2808561:-1:exon

position:2808472:-1
position: 2808472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2808561:-1
position: 2808561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2773506-2773566:-1:exon

position:2773506:-1
position: 2773506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2773566:-1
position: 2773566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2772526-2772668:-1:exon

position:2772526:-1
position: 2772526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2772668:-1
position: 2772668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2772369-2772443:-1:exon

position:2772369:-1
position: 2772369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2772443:-1
position: 2772443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2772172-2772274:-1:exon

position:2772172:-1
position: 2772172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2772274:-1
position: 2772274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2770973-2771113:-1:exon

position:2770973:-1
position: 2770973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2771113:-1
position: 2771113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2770570-2770657:-1:exon

position:2770570:-1
position: 2770570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2770657:-1
position: 2770657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2769894-2770485:-1:exon

position:2769894:-1
position: 2769894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2770485:-1
position: 2770485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2767903-2768988:-1:exon

position:2768988:-1
position: 2768988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Syn1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Syn1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: synapsin-1
translation: MNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSXGGGFFSSLSNAVNQTTAAAAATVSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPXVVKMGPRTPGMGKVKVDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALPRQRDASPGRGSHSQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQASISGPAPPKVSGASPGGQQRQGPPQKPPGPAGPIRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPTKPQLAQKPSQDVPPPIIAAAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFSD
SIO_010081: Syn1
subclass of: SO_0000673
so part of: Syn1
location: complement(join(2768853..2768988,2769894..2770485,2770570..2770657,2770973..2771113,2772172..2772274,2772369..2772443,2772526..2772668,2773506..2773566,2808472..2808561,2809416..2809572,2810793..2810884,2810975..2811032,2822159..2822533))
location: region:2768853-2822533:-1
so has part: feature:2822159-2822533:-1:exon
so has part: feature:2810975-2811032:-1:exon
so has part: feature:2810793-2810884:-1:exon
so has part: feature:2809416-2809572:-1:exon
so has part: feature:2808472-2808561:-1:exon
so has part: feature:2773506-2773566:-1:exon
so has part: feature:2772526-2772668:-1:exon
so has part: feature:2772369-2772443:-1:exon
so has part: feature:2772172-2772274:-1:exon
so has part: feature:2770973-2771113:-1:exon
so has part: feature:2770570-2770657:-1:exon
so has part: feature:2769894-2770485:-1:exon
so has part: feature:2768853-2768988:-1:exon

XP_032746390.1
type: Protein
SIO_000068: ncbiprotein

position:2768853:-1
position: 2768853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2822533:-1
position: 2822533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2822159-2822533:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2810975-2811032:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2810793-2810884:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2809416-2809572:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2808472-2808561:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2773506-2773566:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2772526-2772668:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2772369-2772443:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2772172-2772274:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2770973-2771113:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2770570-2770657:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2769894-2770485:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2768853-2768988:-1:exon

Timp1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Timp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2777611..2782506
location: region:2777611-2782506:1
so has part: feature:2777611-2782506:1:exon
subclass of: SO_0000010

116889399
type: Gene
SIO_000068: ncbigene

position:2777611:1
position: 2777611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2782506:1
position: 2782506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2777611-2782506:1:exon

Timp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Timp1
product: TIMP metallopeptidase inhibitor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 19 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_032890503.1
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2777611..2777764,2778504..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782506)
location: region:2777611-2782506:1
so has part: feature:2777611-2777764:1:exon
so has part: feature:2778504-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782506:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2777611-2777764:1:exon

position:2777764:1
position: 2777764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2778504-2778635:1:exon

position:2778504:1
position: 2778504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2778635:1
position: 2778635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2780578-2780657:1:exon

position:2780578:1
position: 2780578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2780657:1
position: 2780657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2780846-2780972:1:exon

position:2780846:1
position: 2780846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2780972:1
position: 2780972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2781172-2781296:1:exon

position:2781172:1
position: 2781172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2781296:1
position: 2781296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2782240-2782506:1:exon

position:2782240:1
position: 2782240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Timp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Timp1
product: TIMP metallopeptidase inhibitor 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 19 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_032890504.1
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2777614..2777764,2778507..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782506)
location: region:2777614-2782506:1
so has part: feature:2777614-2777764:1:exon
so has part: feature:2778507-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782506:1:exon

position:2777614:1
position: 2777614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2777614-2777764:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2778507-2778635:1:exon

position:2778507:1
position: 2778507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2782240-2782506:1:exon

Timp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Timp1
product: TIMP metallopeptidase inhibitor 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_032890505.1
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2777705..2777764,2778115..2778156,2778507..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782506)
location: region:2777705-2782506:1
so has part: feature:2777705-2777764:1:exon
so has part: feature:2778115-2778156:1:exon
so has part: feature:2778507-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782506:1:exon

position:2777705:1
position: 2777705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2777705-2777764:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2778115-2778156:1:exon

position:2778115:1
position: 2778115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2778156:1
position: 2778156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2778507-2778635:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2782240-2782506:1:exon

Timp1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Timp1
product: TIMP metallopeptidase inhibitor 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_032890506.1
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2777710..2777764,2778115..2778156,2778504..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782506)
location: region:2777710-2782506:1
so has part: feature:2777710-2777764:1:exon
so has part: feature:2778115-2778156:1:exon
so has part: feature:2778504-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782506:1:exon

position:2777710:1
position: 2777710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2777710-2777764:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2778115-2778156:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2778504-2778635:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2782240-2782506:1:exon

Timp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Timp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: metalloproteinase inhibitor 1
translation: MAPFASLASGILLLLSLIASSKACSCAPTHPQTAFCNSDLVIRAKFMGSPEIIETTLYQRYEIKMTKMLKGFDAVGNATGFRFAYTPAMESLCGYVHKSQNRSEEFLIAGRLRNGNLHITACSFLVPWRNLSPAQQKAFVKTYSAGCGVCTVFPCSAIPCKLESDSHCLWTDQILMGSEKGYQSDHFACLPRNPDLCTWQYLGVSMTRSLPLAKAEA
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2778515..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782440)
location: region:2778515-2782440:1
so has part: feature:2778515-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782440:1:exon

XP_032746394.1
type: Protein
SIO_000068: ncbiprotein

position:2778515:1
position: 2778515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2782440:1
position: 2782440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2778515-2778635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2782240-2782440:1:exon

Timp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Timp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: metalloproteinase inhibitor 1
translation: MAPFASLASGILLLLSLIASSKACSCAPTHPQTAFCNSDLVIRAKFMGSPEIIETTLYQRYEIKMTKMLKGFDAVGNATGFRFAYTPAMESLCGYVHKSQNRSEEFLIAGRLRNGNLHITACSFLVPWRNLSPAQQKAFVKTYSAGCGVCTVFPCSAIPCKLESDSHCLWTDQILMGSEKGYQSDHFACLPRNPDLCTWQYLGVSMTRSLPLAKAEA
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2778515..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782440)
location: region:2778515-2782440:1
so has part: feature:2778515-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782440:1:exon

XP_032746395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2778515-2778635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2782240-2782440:1:exon

Timp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Timp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: metalloproteinase inhibitor 1
translation: MAPFASLASGILLLLSLIASSKACSCAPTHPQTAFCNSDLVIRAKFMGSPEIIETTLYQRYEIKMTKMLKGFDAVGNATGFRFAYTPAMESLCGYVHKSQNRSEEFLIAGRLRNGNLHITACSFLVPWRNLSPAQQKAFVKTYSAGCGVCTVFPCSAIPCKLESDSHCLWTDQILMGSEKGYQSDHFACLPRNPDLCTWQYLGVSMTRSLPLAKAEA
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2778515..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782440)
location: region:2778515-2782440:1
so has part: feature:2778515-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782440:1:exon

XP_032746396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2778515-2778635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2782240-2782440:1:exon

Timp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Timp1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: metalloproteinase inhibitor 1
translation: MAPFASLASGILLLLSLIASSKACSCAPTHPQTAFCNSDLVIRAKFMGSPEIIETTLYQRYEIKMTKMLKGFDAVGNATGFRFAYTPAMESLCGYVHKSQNRSEEFLIAGRLRNGNLHITACSFLVPWRNLSPAQQKAFVKTYSAGCGVCTVFPCSAIPCKLESDSHCLWTDQILMGSEKGYQSDHFACLPRNPDLCTWQYLGVSMTRSLPLAKAEA
SIO_010081: Timp1
subclass of: SO_0000673
so part of: Timp1
location: join(2778515..2778635,2780578..2780657,2780846..2780972,2781172..2781296,2782240..2782440)
location: region:2778515-2782440:1
so has part: feature:2778515-2778635:1:exon
so has part: feature:2780578-2780657:1:exon
so has part: feature:2780846-2780972:1:exon
so has part: feature:2781172-2781296:1:exon
so has part: feature:2782240-2782440:1:exon

XP_032746397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2778515-2778635:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2780578-2780657:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2780846-2780972:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2781172-2781296:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2782240-2782440:1:exon

Cfp
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Cfp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2827219..2834867)
location: region:2827219-2834867:-1
so has part: feature:2827219-2834867:-1:exon
subclass of: SO_0000010

116889401
type: Gene
SIO_000068: ncbigene

position:2827219:-1
position: 2827219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2834867:-1
position: 2834867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2827219-2834867:-1:exon

Cfp
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Cfp
product: complement factor properdin
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 ESTs, 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890508.1
SIO_010081: Cfp
subclass of: SO_0000673
so part of: Cfp
location: complement(join(2827219..2827446,2828954..2829065,2829208..2829398,2829638..2829811,2830031..2830222,2830328..2830498,2830883..2831058,2832429..2832579,2832662..2834867))
location: region:2827219-2834867:-1
so has part: feature:2832662-2834867:-1:exon
so has part: feature:2832429-2832579:-1:exon
so has part: feature:2830883-2831058:-1:exon
so has part: feature:2830328-2830498:-1:exon
so has part: feature:2830031-2830222:-1:exon
so has part: feature:2829638-2829811:-1:exon
so has part: feature:2829208-2829398:-1:exon
so has part: feature:2828954-2829065:-1:exon
so has part: feature:2827219-2827446:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2832662-2834867:-1:exon

position:2832662:-1
position: 2832662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2832429-2832579:-1:exon

position:2832429:-1
position: 2832429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2832579:-1
position: 2832579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2830883-2831058:-1:exon

position:2830883:-1
position: 2830883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2831058:-1
position: 2831058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2830328-2830498:-1:exon

position:2830328:-1
position: 2830328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2830498:-1
position: 2830498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2830031-2830222:-1:exon

position:2830031:-1
position: 2830031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2830222:-1
position: 2830222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2829638-2829811:-1:exon

position:2829638:-1
position: 2829638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2829811:-1
position: 2829811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2829208-2829398:-1:exon

position:2829208:-1
position: 2829208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2829398:-1
position: 2829398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2828954-2829065:-1:exon

position:2828954:-1
position: 2828954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2829065:-1
position: 2829065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2827219-2827446:-1:exon

position:2827446:-1
position: 2827446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Cfp
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Cfp
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: properdin
translation: MPVGMQAPQWLLLLLLILPTTGSDPVLCFTQYEEPSGRCKGLLGRDIRVEDCCLNAAYAFQEHDGGLCQSCRSPQWSAWSSWEPCSVTCSEGSQLRHRRCVGRGGQCSEKAAPGTLEWQLQACEDQLCCPEMGGWSEWGPWGPCSVTCSKGTQTRQRLCDNPSPKCGGYCPGEAQQSQACDTQKICPTHGAWASWGPWNPCSGSCLGGAQEPKETRSRSCSAPAPSHQPPGKPCSGTAYEHRGCSGLPPCPVAGGWGPWGPSSPCPVTCGLGQTLERRTCDHPVPRHGGPFCAGDATRKHVCNTAMPCPVNGEWEAWGKWSHCSRVRMKSISCDEIPGQQSRSRSCGGKKFDGQPCTGNXQDIRHCYDIHNCVLKGSWSQWSTWGLCTPPCGPNPTRVRQRLCTPLLPKYSPTVSMVEGQGEKNVTFWGIPRPLCEVLQGQKLVVEEKRPCLHVPSCRDPEEKKP
SIO_010081: Cfp
subclass of: SO_0000673
so part of: Cfp
location: complement(join(2827281..2827446,2828954..2829065,2829208..2829398,2829638..2829811,2830031..2830222,2830328..2830498,2830883..2831058,2832429..2832579,2832662..2832725))
location: region:2827281-2832725:-1
so has part: feature:2832662-2832725:-1:exon
so has part: feature:2832429-2832579:-1:exon
so has part: feature:2830883-2831058:-1:exon
so has part: feature:2830328-2830498:-1:exon
so has part: feature:2830031-2830222:-1:exon
so has part: feature:2829638-2829811:-1:exon
so has part: feature:2829208-2829398:-1:exon
so has part: feature:2828954-2829065:-1:exon
so has part: feature:2827281-2827446:-1:exon

XP_032746399.1
type: Protein
SIO_000068: ncbiprotein

position:2827281:-1
position: 2827281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2832725:-1
position: 2832725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2832662-2832725:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2832429-2832579:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2830883-2831058:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2830328-2830498:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2830031-2830222:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2829638-2829811:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2829208-2829398:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2828954-2829065:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2827281-2827446:-1:exon

Elk1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Elk1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2838791..2854778)
location: region:2838791-2854778:-1
so has part: feature:2838791-2854778:-1:exon
subclass of: SO_0000010

116889397
type: Gene
SIO_000068: ncbigene

position:2838791:-1
position: 2838791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2854778:-1
position: 2854778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2838791-2854778:-1:exon

Elk1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Elk1
product: ETS transcription factor ELK1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 21 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_032890502.1
SIO_010081: Elk1
subclass of: SO_0000673
so part of: Elk1
location: complement(join(2838791..2840184,2840271..2840372,2840880..2841311,2841840..2842280,2846254..2846497,2854513..2854778))
location: region:2838791-2854778:-1
so has part: feature:2854513-2854778:-1:exon
so has part: feature:2846254-2846497:-1:exon
so has part: feature:2841840-2842280:-1:exon
so has part: feature:2840880-2841311:-1:exon
so has part: feature:2840271-2840372:-1:exon
so has part: feature:2838791-2840184:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2854513-2854778:-1:exon

position:2854513:-1
position: 2854513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2846254-2846497:-1:exon

position:2846254:-1
position: 2846254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2846497:-1
position: 2846497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2841840-2842280:-1:exon

position:2841840:-1
position: 2841840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2842280:-1
position: 2842280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2840880-2841311:-1:exon

position:2840880:-1
position: 2840880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2841311:-1
position: 2841311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2840271-2840372:-1:exon

position:2840271:-1
position: 2840271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2840372:-1
position: 2840372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2838791-2840184:-1:exon

position:2840184:-1
position: 2840184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Elk1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Elk1
product: ETS transcription factor ELK1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 23 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_032890501.1
SIO_010081: Elk1
subclass of: SO_0000673
so part of: Elk1
location: complement(join(2838791..2840184,2840271..2840372,2840880..2841311,2841840..2842280,2846254..2846497,2847580..2847657,2854513..2854778))
location: region:2838791-2854778:-1
so has part: feature:2854513-2854778:-1:exon
so has part: feature:2847580-2847657:-1:exon
so has part: feature:2846254-2846497:-1:exon
so has part: feature:2841840-2842280:-1:exon
so has part: feature:2840880-2841311:-1:exon
so has part: feature:2840271-2840372:-1:exon
so has part: feature:2838791-2840184:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2854513-2854778:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2847580-2847657:-1:exon

position:2847580:-1
position: 2847580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2847657:-1
position: 2847657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2846254-2846497:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2841840-2842280:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2840880-2841311:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2840271-2840372:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2838791-2840184:-1:exon

Elk1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Elk1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ETS domain-containing protein Elk-1
translation: MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSAVAMAPATVHSGPGDNATGKPGTPKGAGMTGQGGLARSSRNEYMRSGLYSTFTIQSLQPQPPLHPRPASVLPNTTPAGVPAPPSGSRSTSPNPLEACLEAEEAGLPLQVILTPPEAPNQKSEELSLNPGFGRPQPPEVKVEGPKEELEVTEVGGFSPEAVKAEQEVSPSEGLLARLPAILTENTAQVCGLSTSTTEITQPQKGRKPRDLELPLSPSLLGGQGPERTPGSGTSSGLQAQGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQKP
SIO_010081: Elk1
subclass of: SO_0000673
so part of: Elk1
location: complement(join(2840086..2840184,2840271..2840372,2840880..2841311,2841840..2842280,2846254..2846463))
location: region:2840086-2846463:-1
so has part: feature:2846254-2846463:-1:exon
so has part: feature:2841840-2842280:-1:exon
so has part: feature:2840880-2841311:-1:exon
so has part: feature:2840271-2840372:-1:exon
so has part: feature:2840086-2840184:-1:exon

XP_032746392.1
type: Protein
SIO_000068: ncbiprotein

position:2840086:-1
position: 2840086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2846463:-1
position: 2846463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2846254-2846463:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2841840-2842280:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2840880-2841311:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2840271-2840372:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2840086-2840184:-1:exon

Elk1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Elk1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ETS domain-containing protein Elk-1
translation: MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSAVAMAPATVHSGPGDNATGKPGTPKGAGMTGQGGLARSSRNEYMRSGLYSTFTIQSLQPQPPLHPRPASVLPNTTPAGVPAPPSGSRSTSPNPLEACLEAEEAGLPLQVILTPPEAPNQKSEELSLNPGFGRPQPPEVKVEGPKEELEVTEVGGFSPEAVKAEQEVSPSEGLLARLPAILTENTAQVCGLSTSTTEITQPQKGRKPRDLELPLSPSLLGGQGPERTPGSGTSSGLQAQGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQKP
SIO_010081: Elk1
subclass of: SO_0000673
so part of: Elk1
location: complement(join(2840086..2840184,2840271..2840372,2840880..2841311,2841840..2842280,2846254..2846463))
location: region:2840086-2846463:-1
so has part: feature:2846254-2846463:-1:exon
so has part: feature:2841840-2842280:-1:exon
so has part: feature:2840880-2841311:-1:exon
so has part: feature:2840271-2840372:-1:exon
so has part: feature:2840086-2840184:-1:exon

XP_032746393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2846254-2846463:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2841840-2842280:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2840880-2841311:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2840271-2840372:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2840086-2840184:-1:exon

Uxt
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Uxt
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2855746..2866185)
location: region:2855746-2866185:-1
so has part: feature:2855746-2866185:-1:exon
subclass of: SO_0000010

116889400
type: Gene
SIO_000068: ncbigene

position:2855746:-1
position: 2855746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2866185:-1
position: 2866185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2855746-2866185:-1:exon

Uxt
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Uxt
product: ubiquitously expressed prefoldin like chaperone
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032890507.1
SIO_010081: Uxt
subclass of: SO_0000673
so part of: Uxt
location: complement(join(2855746..2856113,2856302..2856365,2863542..2863649,2863919..2863986,2864124..2864205,2865865..2865972,2866111..2866185))
location: region:2855746-2866185:-1
so has part: feature:2866111-2866185:-1:exon
so has part: feature:2865865-2865972:-1:exon
so has part: feature:2864124-2864205:-1:exon
so has part: feature:2863919-2863986:-1:exon
so has part: feature:2863542-2863649:-1:exon
so has part: feature:2856302-2856365:-1:exon
so has part: feature:2855746-2856113:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2866111-2866185:-1:exon

position:2866111:-1
position: 2866111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2865865-2865972:-1:exon

position:2865865:-1
position: 2865865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2865972:-1
position: 2865972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2864124-2864205:-1:exon

position:2864124:-1
position: 2864124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2864205:-1
position: 2864205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2863919-2863986:-1:exon

position:2863919:-1
position: 2863919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2863986:-1
position: 2863986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2863542-2863649:-1:exon

position:2863542:-1
position: 2863542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2863649:-1
position: 2863649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2856302-2856365:-1:exon

position:2856302:-1
position: 2856302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2856365:-1
position: 2856365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2855746-2856113:-1:exon

position:2856113:-1
position: 2856113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Uxt
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Uxt
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein UXT
translation: MATPPKRRALDTVGEKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLGCNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKANIHMMLEGLRELQGLQNFPEPSPH
SIO_010081: Uxt
subclass of: SO_0000673
so part of: Uxt
location: complement(join(2856060..2856113,2856302..2856365,2863542..2863649,2863919..2863986,2864124..2864205,2865865..2865962))
location: region:2856060-2865962:-1
so has part: feature:2865865-2865962:-1:exon
so has part: feature:2864124-2864205:-1:exon
so has part: feature:2863919-2863986:-1:exon
so has part: feature:2863542-2863649:-1:exon
so has part: feature:2856302-2856365:-1:exon
so has part: feature:2856060-2856113:-1:exon

XP_032746398.1
type: Protein
SIO_000068: ncbiprotein

position:2856060:-1
position: 2856060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2865962:-1
position: 2865962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2865865-2865962:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2864124-2864205:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2863919-2863986:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2863542-2863649:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2856302-2856365:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2856060-2856113:-1:exon

LOC116888942
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888942
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2879582..2880450)
location: region:2879582-2880450:-1
so has part: feature:2879582-2880450:-1:exon

116888942
type: Gene
SIO_000068: ncbigene

position:2879582:-1
position: 2879582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2880450:-1
position: 2880450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2879582-2880450:-1:exon

LOC116888942
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888942
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888942
subclass of: SO_0000673
so part of: LOC116888942
location: complement(2879582..2880262)
location: region:2879582-2880262:-1
so has part: feature:2879582-2880262:-1:exon

position:2880262:-1
position: 2880262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2879582-2880262:-1:exon

LOC116888942
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888942
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 25% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888942
subclass of: SO_0000673
so part of: LOC116888942
location: complement(2880440..2880450)
location: region:2880440-2880450:-1
so has part: feature:2880440-2880450:-1:exon

position:2880440:-1
position: 2880440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2880440-2880450:-1:exon

LOC116889402
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889402
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2896300..2918435
location: region:2896300-2918435:1
so has part: feature:2896300-2918435:1:exon
subclass of: SO_0000011

116889402
type: Gene
SIO_000068: ncbigene

position:2896300:1
position: 2896300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2918435:1
position: 2918435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2896300-2918435:1:exon

LOC116889402
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116889402
product: uncharacterized LOC116889402
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_004386380.1
SIO_010081: LOC116889402
subclass of: SO_0000673
so part of: LOC116889402
location: join(2896300..2896730,2916941..2916969,2917746..2918435)
location: region:2896300-2918435:1
so has part: feature:2896300-2896730:1:exon
so has part: feature:2916941-2916969:1:exon
so has part: feature:2917746-2918435:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2896300-2896730:1:exon

position:2896730:1
position: 2896730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2916941-2916969:1:exon

position:2916941:1
position: 2916941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2916969:1
position: 2916969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2917746-2918435:1:exon

position:2917746:1
position: 2917746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888943
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888943
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2933223..2967619
location: region:2933223-2967619:1
so has part: feature:2933223-2967619:1:exon
subclass of: SO_0000010

116888943
type: Gene
SIO_000068: ncbigene

position:2933223:1
position: 2933223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2967619:1
position: 2967619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2933223-2967619:1:exon

LOC116888943
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888943
product: zinc finger protein 182-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 18 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890178.1
SIO_010081: LOC116888943
subclass of: SO_0000673
so part of: LOC116888943
location: join(2933223..2933270,2951823..2951991,2952155..2952289,2964888..2967619)
location: region:2933223-2967619:1
so has part: feature:2933223-2933270:1:exon
so has part: feature:2951823-2951991:1:exon
so has part: feature:2952155-2952289:1:exon
so has part: feature:2964888-2967619:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2933223-2933270:1:exon

position:2933270:1
position: 2933270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2951823-2951991:1:exon

position:2951823:1
position: 2951823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2951991:1
position: 2951991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2952155-2952289:1:exon

position:2952155:1
position: 2952155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2952289:1
position: 2952289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2964888-2967619:1:exon

position:2964888:1
position: 2964888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888943
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888943
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger protein 182-like
translation: MESSKVVPHKQLERDQNKRSLPLQELVTFEDVAVDFTKEEWQYLNSPQRTLYRDVMLETYSNLVSVGKVASTGSEEQGSTYHLSSSEQQVTKPDLIIKLEVEEPDPEDVEIPVWSFPEVCQVNEQFERQHQDKQDKYLLMQVGFPNDKIITKSGQNHTEFGSAFHVSTSLVVPMQRSHQFESFGNNMVDNFNLLTRSSTENKHDTGCAKFFFHTEYANPNFMMKPYGYKEYEKTLRQKKSLSLHQRIKNGERPFECTACQKTFSKKSHLIVHWRTHTGEKPFECSECGKAFSQKSQLIIHLRTHTGERPFACPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSALIIHQRTHTGEKPHKCIECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFACNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECLVCWKAFSQKSQLIIHQRTHTGEKPYECTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHTGKKAHGRGHTHKSKPTMQ
SIO_010081: LOC116888943
subclass of: SO_0000673
so part of: LOC116888943
location: join(2933223..2933270,2951823..2951991,2952155..2952289,2964888..2966516)
location: region:2933223-2966516:1
so has part: feature:2933223-2933270:1:exon
so has part: feature:2951823-2951991:1:exon
so has part: feature:2952155-2952289:1:exon
so has part: feature:2964888-2966516:1:exon

XP_032746069.1
type: Protein
SIO_000068: ncbiprotein

position:2966516:1
position: 2966516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2933223-2933270:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2951823-2951991:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2952155-2952289:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2964888-2966516:1:exon

LOC116888944
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888944
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3013099..3013621
location: region:3013099-3013621:1
so has part: feature:3013099-3013621:1:exon

116888944
type: Gene
SIO_000068: ncbigene

position:3013099:1
position: 3013099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3013621:1
position: 3013621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3013099-3013621:1:exon

LOC116888944
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888944
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC116888944
subclass of: SO_0000673
so part of: LOC116888944
location: 3013099..3013621
location: region:3013099-3013621:1
so has part: feature:3013099-3013621:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3013099-3013621:1:exon

LOC116888780
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888780
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3036421..3038094)
location: region:3036421-3038094:-1
so has part: feature:3036421-3038094:-1:exon
subclass of: SO_0000010

116888780
type: Gene
SIO_000068: ncbigene

position:3036421:-1
position: 3036421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3038094:-1
position: 3038094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3036421-3038094:-1:exon

LOC116888780
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888780
product: destrin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 92 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890065.1
SIO_010081: LOC116888780
subclass of: SO_0000673
so part of: LOC116888780
location: complement(3036421..3038094)
location: region:3036421-3038094:-1
so has part: feature:3036421-3038094:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3036421-3038094:-1:exon

LOC116888780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888780
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: destrin-like
translation: MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTSIAEKLGGYLIVAFEGSPV
SIO_010081: LOC116888780
subclass of: SO_0000673
so part of: LOC116888780
location: complement(3037517..3038014)
location: region:3037517-3038014:-1
so has part: feature:3037517-3038014:-1:exon

XP_032745956.1
type: Protein
SIO_000068: ncbiprotein

position:3037517:-1
position: 3037517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3038014:-1
position: 3038014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3037517-3038014:-1:exon

LOC116888781
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888781
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3039693..3040028
location: region:3039693-3040028:1
so has part: feature:3039693-3040028:1:exon

116888781
type: Gene
SIO_000068: ncbigene

position:3039693:1
position: 3039693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3040028:1
position: 3040028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3039693-3040028:1:exon

LOC116888781
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888781
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
pseudo: true
SIO_010081: LOC116888781
subclass of: SO_0000673
so part of: LOC116888781
location: 3039693..3040028
location: region:3039693-3040028:1
so has part: feature:3039693-3040028:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3039693-3040028:1:exon

LOC116888782
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888782
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3041717..3042080
location: region:3041717-3042080:1
so has part: feature:3041717-3042080:1:exon

116888782
type: Gene
SIO_000068: ncbigene

position:3041717:1
position: 3041717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3042080:1
position: 3042080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3041717-3042080:1:exon

LOC116888782
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888782
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888782
subclass of: SO_0000673
so part of: LOC116888782
location: 3041717..3042080
location: region:3041717-3042080:1
so has part: feature:3041717-3042080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3041717-3042080:1:exon

LOC116888891
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888891
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3066551..3082048)
location: region:3066551-3082048:-1
so has part: feature:3066551-3082048:-1:exon
subclass of: SO_0000010

116888891
type: Gene
SIO_000068: ncbigene

position:3066551:-1
position: 3066551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3082048:-1
position: 3082048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3066551-3082048:-1:exon

LOC116888891
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888891
product: protein Jade-3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_032890153.1
SIO_010081: LOC116888891
subclass of: SO_0000673
so part of: LOC116888891
location: complement(join(3066551..3069515,3080628..3080745,3081563..3082048))
location: region:3066551-3082048:-1
so has part: feature:3081563-3082048:-1:exon
so has part: feature:3080628-3080745:-1:exon
so has part: feature:3066551-3069515:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3081563-3082048:-1:exon

position:3081563:-1
position: 3081563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3080628-3080745:-1:exon

position:3080628:-1
position: 3080628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3080745:-1
position: 3080745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3066551-3069515:-1:exon

position:3069515:-1
position: 3069515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888891
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888891
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Jade-3
translation: MKTILDEGDEVKFKSFCLKHSQNKPKLGDAEYHHHRAAEQSQAKSEKTSLRAQKLRELEEEFYTLVQVEDVAKEMGLSAFTVDFIYNYWKLKRKSNFNKPLIPPKEDEQNGLVQPKEESIHTRMRMFMHLRQDLERVRNLCYMISRREKLKLSHTKVQEQIFGLQVQLINEEITDGLSLTNALENSLFYPPPRITLKLKMPKSTSEDCRDSSTETEHQPSSPGSSSPSHSKRSPEMPEEPLDTNVIYPRYPLESKSNCVLASRSHSRSETRSSSPTQRAPSAEFYHGQSLGKPLALQAALHGQSSIGNGKNQPNSRLASSNGLEGNWSGNITQKVNSGEMCYDQESMLSSHLPSSGNIRKSGMEHFSRSFKEATNTWVKPTEDLQYCVKPTKNVSSKEQLWGRPLLRRSTGRASYQETDGYCPDLEPSDSEAEGEGNKETVRVKRESSDRENPSHDSARECHGKTKTHPHSHSSMQR
SIO_010081: LOC116888891
subclass of: SO_0000673
so part of: LOC116888891
location: complement(join(3068608..3069515,3080628..3080745,3081563..3081970))
location: region:3068608-3081970:-1
so has part: feature:3081563-3081970:-1:exon
so has part: feature:3080628-3080745:-1:exon
so has part: feature:3068608-3069515:-1:exon

XP_032746044.1
type: Protein
SIO_000068: ncbiprotein

position:3068608:-1
position: 3068608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3081970:-1
position: 3081970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3081563-3081970:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3080628-3080745:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3068608-3069515:-1:exon

Usp11
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Usp11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3127071..3143352)
location: region:3127071-3143352:-1
so has part: feature:3127071-3143352:-1:exon
subclass of: SO_0000010

116887809
type: Gene
SIO_000068: ncbigene

position:3127071:-1
position: 3127071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3143352:-1
position: 3143352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3127071-3143352:-1:exon

Usp11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Usp11
product: ubiquitin specific peptidase 11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 41 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_032889334.1
SIO_010081: Usp11
subclass of: SO_0000673
so part of: Usp11
location: complement(join(3127071..3127822,3127904..3127992,3128181..3128296,3128381..3128530,3128818..3128930,3129185..3129255,3129340..3129618,3129817..3129866,3130759..3130965,3132145..3132239,3132333..3132416,3132537..3132761,3133102..3133260,3133350..3133523,3133868..3133967,3134088..3134149,3134287..3134432,3134803..3134920,3135087..3135217,3135390..3135499,3143138..3143352))
location: region:3127071-3143352:-1
so has part: feature:3143138-3143352:-1:exon
so has part: feature:3135390-3135499:-1:exon
so has part: feature:3135087-3135217:-1:exon
so has part: feature:3134803-3134920:-1:exon
so has part: feature:3134287-3134432:-1:exon
so has part: feature:3134088-3134149:-1:exon
so has part: feature:3133868-3133967:-1:exon
so has part: feature:3133350-3133523:-1:exon
so has part: feature:3133102-3133260:-1:exon
so has part: feature:3132537-3132761:-1:exon
so has part: feature:3132333-3132416:-1:exon
so has part: feature:3132145-3132239:-1:exon
so has part: feature:3130759-3130965:-1:exon
so has part: feature:3129817-3129866:-1:exon
so has part: feature:3129340-3129618:-1:exon
so has part: feature:3129185-3129255:-1:exon
so has part: feature:3128818-3128930:-1:exon
so has part: feature:3128381-3128530:-1:exon
so has part: feature:3128181-3128296:-1:exon
so has part: feature:3127904-3127992:-1:exon
so has part: feature:3127071-3127822:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3143138-3143352:-1:exon

position:3143138:-1
position: 3143138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3135390-3135499:-1:exon

position:3135390:-1
position: 3135390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3135499:-1
position: 3135499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3135087-3135217:-1:exon

position:3135087:-1
position: 3135087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3135217:-1
position: 3135217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3134803-3134920:-1:exon

position:3134803:-1
position: 3134803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3134920:-1
position: 3134920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3134287-3134432:-1:exon

position:3134287:-1
position: 3134287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3134432:-1
position: 3134432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3134088-3134149:-1:exon

position:3134088:-1
position: 3134088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3134149:-1
position: 3134149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3133868-3133967:-1:exon

position:3133868:-1
position: 3133868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3133967:-1
position: 3133967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3133350-3133523:-1:exon

position:3133350:-1
position: 3133350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3133523:-1
position: 3133523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3133102-3133260:-1:exon

position:3133102:-1
position: 3133102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3133260:-1
position: 3133260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3132537-3132761:-1:exon

position:3132537:-1
position: 3132537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3132761:-1
position: 3132761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3132333-3132416:-1:exon

position:3132333:-1
position: 3132333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3132416:-1
position: 3132416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3132145-3132239:-1:exon

position:3132145:-1
position: 3132145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3132239:-1
position: 3132239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3130759-3130965:-1:exon

position:3130759:-1
position: 3130759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3130965:-1
position: 3130965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3129817-3129866:-1:exon

position:3129817:-1
position: 3129817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3129866:-1
position: 3129866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3129340-3129618:-1:exon

position:3129340:-1
position: 3129340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3129618:-1
position: 3129618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3129185-3129255:-1:exon

position:3129185:-1
position: 3129185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3129255:-1
position: 3129255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3128818-3128930:-1:exon

position:3128818:-1
position: 3128818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3128930:-1
position: 3128930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3128381-3128530:-1:exon

position:3128381:-1
position: 3128381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3128530:-1
position: 3128530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3128181-3128296:-1:exon

position:3128181:-1
position: 3128181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3128296:-1
position: 3128296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3127904-3127992:-1:exon

position:3127904:-1
position: 3127904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3127992:-1
position: 3127992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3127071-3127822:-1:exon

position:3127822:-1
position: 3127822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Usp11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Usp11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 11
translation: MAAVAADPAAAAVPASAEDRETQPEAMPDLDQQWRQIGNGRERPLRAGESWFLVEKHWYKQWEAYVKGGDQDASTFPGSINNAGLFEDQISWHLRERLVEGDDYVLLPAPAWNYLVSWYGLKDDQPPIERKVIELPGIRKVEVYPIELLLVQHSDMETALTIQFSYSDSVDQVLQTAREQFLVEPQEDTRLWTKNSEGSLDRLCNTQITLLDACLETGQLVIMETRNKDGTWPSAQLCGMNNMPDEDEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAPDKMIVADVFSHRFYKLYQLEDPLSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRDYNNSYYGLILFGHPLLVSVPRDRFSWEGLYNILMYRLSRYVTKPTSDDDDGDEKGDENEDEDVEDDSSSEEEKEEMPGPTDNDGTQESEQEQAGTSSGVTGRCPSLLDNSLHTSQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEAQTQPYIAMDWEPEMKRRYYDEVEAEGYVKHDCVGYMLKKNPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFSEFVIKPKNESAPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQDVGRRQSQTASSETPTSPASSSTPNSDIMDVN
SIO_010081: Usp11
subclass of: SO_0000673
so part of: Usp11
location: complement(join(3127688..3127822,3127904..3127992,3128181..3128296,3128381..3128530,3128818..3128930,3129185..3129255,3129340..3129618,3129817..3129866,3130759..3130965,3132145..3132239,3132333..3132416,3132537..3132761,3133102..3133260,3133350..3133523,3133868..3133967,3134088..3134149,3134287..3134432,3134803..3134920,3135087..3135217,3135390..3135499,3143138..3143289))
location: region:3127688-3143289:-1
so has part: feature:3143138-3143289:-1:exon
so has part: feature:3135390-3135499:-1:exon
so has part: feature:3135087-3135217:-1:exon
so has part: feature:3134803-3134920:-1:exon
so has part: feature:3134287-3134432:-1:exon
so has part: feature:3134088-3134149:-1:exon
so has part: feature:3133868-3133967:-1:exon
so has part: feature:3133350-3133523:-1:exon
so has part: feature:3133102-3133260:-1:exon
so has part: feature:3132537-3132761:-1:exon
so has part: feature:3132333-3132416:-1:exon
so has part: feature:3132145-3132239:-1:exon
so has part: feature:3130759-3130965:-1:exon
so has part: feature:3129817-3129866:-1:exon
so has part: feature:3129340-3129618:-1:exon
so has part: feature:3129185-3129255:-1:exon
so has part: feature:3128818-3128930:-1:exon
so has part: feature:3128381-3128530:-1:exon
so has part: feature:3128181-3128296:-1:exon
so has part: feature:3127904-3127992:-1:exon
so has part: feature:3127688-3127822:-1:exon

XP_032745225.1
type: Protein
SIO_000068: ncbiprotein

position:3127688:-1
position: 3127688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3143289:-1
position: 3143289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3143138-3143289:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3135390-3135499:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3135087-3135217:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3134803-3134920:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3134287-3134432:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3134088-3134149:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3133868-3133967:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3133350-3133523:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3133102-3133260:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3132537-3132761:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3132333-3132416:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3132145-3132239:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3130759-3130965:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3129817-3129866:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3129340-3129618:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3129185-3129255:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3128818-3128930:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3128381-3128530:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3128181-3128296:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3127904-3127992:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3127688-3127822:-1:exon

Cdk16
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Cdk16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3146588..3158145)
location: region:3146588-3158145:-1
so has part: feature:3146588-3158145:-1:exon
subclass of: SO_0000010

116887810
type: Gene
SIO_000068: ncbigene

position:3146588:-1
position: 3146588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3158145:-1
position: 3158145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3146588-3158145:-1:exon

Cdk16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Cdk16
product: cyclin dependent kinase 16
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 ESTs, 37 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_032889335.1
SIO_010081: Cdk16
subclass of: SO_0000673
so part of: Cdk16
location: complement(join(3146588..3147861,3147942..3148019,3149270..3149360,3149513..3149555,3149637..3149742,3149828..3149925,3150005..3150125,3150331..3150454,3150694..3150756,3150851..3150945,3151530..3151644,3151731..3151787,3151873..3151998,3152096..3152229,3152823..3153025,3157903..3158145))
location: region:3146588-3158145:-1
so has part: feature:3157903-3158145:-1:exon
so has part: feature:3152823-3153025:-1:exon
so has part: feature:3152096-3152229:-1:exon
so has part: feature:3151873-3151998:-1:exon
so has part: feature:3151731-3151787:-1:exon
so has part: feature:3151530-3151644:-1:exon
so has part: feature:3150851-3150945:-1:exon
so has part: feature:3150694-3150756:-1:exon
so has part: feature:3150331-3150454:-1:exon
so has part: feature:3150005-3150125:-1:exon
so has part: feature:3149828-3149925:-1:exon
so has part: feature:3149637-3149742:-1:exon
so has part: feature:3149513-3149555:-1:exon
so has part: feature:3149270-3149360:-1:exon
so has part: feature:3147942-3148019:-1:exon
so has part: feature:3146588-3147861:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3157903-3158145:-1:exon

position:3157903:-1
position: 3157903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3152823-3153025:-1:exon

position:3152823:-1
position: 3152823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3153025:-1
position: 3153025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3152096-3152229:-1:exon

position:3152096:-1
position: 3152096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3152229:-1
position: 3152229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3151873-3151998:-1:exon

position:3151873:-1
position: 3151873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3151998:-1
position: 3151998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3151731-3151787:-1:exon

position:3151731:-1
position: 3151731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3151787:-1
position: 3151787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3151530-3151644:-1:exon

position:3151530:-1
position: 3151530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3151644:-1
position: 3151644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3150851-3150945:-1:exon

position:3150851:-1
position: 3150851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3150945:-1
position: 3150945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3150694-3150756:-1:exon

position:3150694:-1
position: 3150694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3150756:-1
position: 3150756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3150331-3150454:-1:exon

position:3150331:-1
position: 3150331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3150454:-1
position: 3150454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3150005-3150125:-1:exon

position:3150005:-1
position: 3150005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3150125:-1
position: 3150125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3149828-3149925:-1:exon

position:3149828:-1
position: 3149828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3149925:-1
position: 3149925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3149637-3149742:-1:exon

position:3149637:-1
position: 3149637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3149742:-1
position: 3149742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3149513-3149555:-1:exon

position:3149513:-1
position: 3149513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3149555:-1
position: 3149555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3149270-3149360:-1:exon

position:3149270:-1
position: 3149270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3149360:-1
position: 3149360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3147942-3148019:-1:exon

position:3147942:-1
position: 3147942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3148019:-1
position: 3148019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3146588-3147861:-1:exon

position:3147861:-1
position: 3147861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Cdk16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Cdk16
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: cyclin-dependent kinase 16
translation: MDRMKKIKRQLSMTLRGGRGIDKTNGVPEQIALDESGGGGGSDLGEAPTRVAPGNFRXMGPLSSAPEIVHEDMKMGSDGESDQASATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPIFDKPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEDTWPGILSNEEFRTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEVQLQKEANIRSTSMPDSGRPAFRVVDTEF
SIO_010081: Cdk16
subclass of: SO_0000673
so part of: Cdk16
location: complement(join(3147824..3147861,3147942..3148019,3149270..3149360,3149513..3149555,3149637..3149742,3149828..3149925,3150005..3150125,3150331..3150454,3150694..3150756,3150851..3150945,3151530..3151644,3151731..3151787,3151873..3151998,3152096..3152229,3152823..3153019))
location: region:3147824-3153019:-1
so has part: feature:3152823-3153019:-1:exon
so has part: feature:3152096-3152229:-1:exon
so has part: feature:3151873-3151998:-1:exon
so has part: feature:3151731-3151787:-1:exon
so has part: feature:3151530-3151644:-1:exon
so has part: feature:3150851-3150945:-1:exon
so has part: feature:3150694-3150756:-1:exon
so has part: feature:3150331-3150454:-1:exon
so has part: feature:3150005-3150125:-1:exon
so has part: feature:3149828-3149925:-1:exon
so has part: feature:3149637-3149742:-1:exon
so has part: feature:3149513-3149555:-1:exon
so has part: feature:3149270-3149360:-1:exon
so has part: feature:3147942-3148019:-1:exon
so has part: feature:3147824-3147861:-1:exon

XP_032745226.1
type: Protein
SIO_000068: ncbiprotein

position:3147824:-1
position: 3147824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3153019:-1
position: 3153019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3152823-3153019:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3152096-3152229:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3151873-3151998:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3151731-3151787:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3151530-3151644:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3150851-3150945:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3150694-3150756:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3150331-3150454:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3150005-3150125:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3149828-3149925:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3149637-3149742:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3149513-3149555:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3149270-3149360:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3147942-3148019:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3147824-3147861:-1:exon

Uba1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Uba1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3162579..3183986)
location: region:3162579-3183986:-1
so has part: feature:3162579-3183986:-1:exon
subclass of: SO_0000010

116888430
type: Gene
SIO_000068: ncbigene

position:3162579:-1
position: 3162579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3183986:-1
position: 3183986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3162579-3183986:-1:exon

Uba1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Uba1
product: ubiquitin like modifier activating enzyme 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 134 ESTs, 21 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_032889706.1
SIO_010081: Uba1
subclass of: SO_0000673
so part of: Uba1
location: complement(join(3162579..3162898,3163059..3163159,3163255..3163356,3163719..3163910,3164033..3164125,3164354..3164442,3165492..3165681,3165715..3165716,3165803..3165854,3166460..3166655,3166892..3166956,3168887..3169083,3169204..3169369,3171731..3171886,3171994..3172074,3172161..3172265,3172362..3172538,3172666..3172812,3173047..3173144,3173638..3173770,3173871..3173961,3174201..3174307,3175198..3175332,3175420..3175581,3175667..3175725,3175868..3175984,3183894..3183986))
location: region:3162579-3183986:-1
so has part: feature:3183894-3183986:-1:exon
so has part: feature:3175868-3175984:-1:exon
so has part: feature:3175667-3175725:-1:exon
so has part: feature:3175420-3175581:-1:exon
so has part: feature:3175198-3175332:-1:exon
so has part: feature:3174201-3174307:-1:exon
so has part: feature:3173871-3173961:-1:exon
so has part: feature:3173638-3173770:-1:exon
so has part: feature:3173047-3173144:-1:exon
so has part: feature:3172666-3172812:-1:exon
so has part: feature:3172362-3172538:-1:exon
so has part: feature:3172161-3172265:-1:exon
so has part: feature:3171994-3172074:-1:exon
so has part: feature:3171731-3171886:-1:exon
so has part: feature:3169204-3169369:-1:exon
so has part: feature:3168887-3169083:-1:exon
so has part: feature:3166892-3166956:-1:exon
so has part: feature:3166460-3166655:-1:exon
so has part: feature:3165803-3165854:-1:exon
so has part: feature:3165715-3165716:-1:exon
so has part: feature:3165492-3165681:-1:exon
so has part: feature:3164354-3164442:-1:exon
so has part: feature:3164033-3164125:-1:exon
so has part: feature:3163719-3163910:-1:exon
so has part: feature:3163255-3163356:-1:exon
so has part: feature:3163059-3163159:-1:exon
so has part: feature:3162579-3162898:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3183894-3183986:-1:exon

position:3183894:-1
position: 3183894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3175868-3175984:-1:exon

position:3175868:-1
position: 3175868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3175984:-1
position: 3175984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3175667-3175725:-1:exon

position:3175667:-1
position: 3175667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3175725:-1
position: 3175725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3175420-3175581:-1:exon

position:3175420:-1
position: 3175420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3175581:-1
position: 3175581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3175198-3175332:-1:exon

position:3175198:-1
position: 3175198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3175332:-1
position: 3175332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3174201-3174307:-1:exon

position:3174201:-1
position: 3174201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3174307:-1
position: 3174307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3173871-3173961:-1:exon

position:3173871:-1
position: 3173871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3173961:-1
position: 3173961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3173638-3173770:-1:exon

position:3173638:-1
position: 3173638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3173770:-1
position: 3173770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3173047-3173144:-1:exon

position:3173047:-1
position: 3173047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3173144:-1
position: 3173144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3172666-3172812:-1:exon

position:3172666:-1
position: 3172666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3172812:-1
position: 3172812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3172362-3172538:-1:exon

position:3172362:-1
position: 3172362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3172538:-1
position: 3172538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3172161-3172265:-1:exon

position:3172161:-1
position: 3172161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3172265:-1
position: 3172265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3171994-3172074:-1:exon

position:3171994:-1
position: 3171994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3172074:-1
position: 3172074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3171731-3171886:-1:exon

position:3171731:-1
position: 3171731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3171886:-1
position: 3171886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3169204-3169369:-1:exon

position:3169204:-1
position: 3169204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3169369:-1
position: 3169369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3168887-3169083:-1:exon

position:3168887:-1
position: 3168887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3169083:-1
position: 3169083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3166892-3166956:-1:exon

position:3166892:-1
position: 3166892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3166956:-1
position: 3166956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3166460-3166655:-1:exon

position:3166460:-1
position: 3166460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3166655:-1
position: 3166655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3165803-3165854:-1:exon

position:3165803:-1
position: 3165803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3165854:-1
position: 3165854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3165715-3165716:-1:exon

position:3165715:-1
position: 3165715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3165716:-1
position: 3165716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3165492-3165681:-1:exon

position:3165492:-1
position: 3165492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3165681:-1
position: 3165681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:3164354-3164442:-1:exon

position:3164354:-1
position: 3164354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3164442:-1
position: 3164442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:3164033-3164125:-1:exon

position:3164033:-1
position: 3164033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3164125:-1
position: 3164125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:3163719-3163910:-1:exon

position:3163719:-1
position: 3163719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3163910:-1
position: 3163910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:3163255-3163356:-1:exon

position:3163255:-1
position: 3163255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3163356:-1
position: 3163356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:3163059-3163159:-1:exon

position:3163059:-1
position: 3163059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3163159:-1
position: 3163159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:3162579-3162898:-1:exon

position:3162898:-1
position: 3162898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Uba1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Uba1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1
translation: MSSSPLSKKRRVSGPDPKPGSNCSSAQSVLSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVKXAKNIILGGVKAVTXHDQALQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEDQLRVGEFCHSRGIKLVVADTRGLFGQLFCDFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGMVQLNGCPPIEIKVLGPYTFSICDTSNYSDYIRGGIVSQVKVPKKISFKSLPASLAEPDFVMTDFAKYSRPAQLHIGFQALHQFCAQHNRPPRPRNEEDATELVTLAQAVNARSPPAVQQDNVDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLPEDKEALTEDKCLPRQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSDPRSTPLTFFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKMHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR
SIO_010081: Uba1
subclass of: SO_0000673
so part of: Uba1
location: complement(join(3162763..3162898,3163059..3163159,3163255..3163356,3163719..3163910,3164033..3164125,3164354..3164442,3165492..3165681,3165715..3165716,3165803..3165854,3166460..3166655,3166892..3166956,3168887..3169083,3169204..3169369,3171731..3171886,3171994..3172074,3172161..3172265,3172362..3172538,3172666..3172812,3173047..3173144,3173638..3173770,3173871..3173961,3174201..3174307,3175198..3175332,3175420..3175581,3175667..3175725,3175868..3175984))
location: region:3162763-3175984:-1
so has part: feature:3175868-3175984:-1:exon
so has part: feature:3175667-3175725:-1:exon
so has part: feature:3175420-3175581:-1:exon
so has part: feature:3175198-3175332:-1:exon
so has part: feature:3174201-3174307:-1:exon
so has part: feature:3173871-3173961:-1:exon
so has part: feature:3173638-3173770:-1:exon
so has part: feature:3173047-3173144:-1:exon
so has part: feature:3172666-3172812:-1:exon
so has part: feature:3172362-3172538:-1:exon
so has part: feature:3172161-3172265:-1:exon
so has part: feature:3171994-3172074:-1:exon
so has part: feature:3171731-3171886:-1:exon
so has part: feature:3169204-3169369:-1:exon
so has part: feature:3168887-3169083:-1:exon
so has part: feature:3166892-3166956:-1:exon
so has part: feature:3166460-3166655:-1:exon
so has part: feature:3165803-3165854:-1:exon
so has part: feature:3165715-3165716:-1:exon
so has part: feature:3165492-3165681:-1:exon
so has part: feature:3164354-3164442:-1:exon
so has part: feature:3164033-3164125:-1:exon
so has part: feature:3163719-3163910:-1:exon
so has part: feature:3163255-3163356:-1:exon
so has part: feature:3163059-3163159:-1:exon
so has part: feature:3162763-3162898:-1:exon

XP_032745597.1
type: Protein
SIO_000068: ncbiprotein

position:3162763:-1
position: 3162763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3175868-3175984:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3175667-3175725:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3175420-3175581:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3175198-3175332:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3174201-3174307:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3173871-3173961:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3173638-3173770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3173047-3173144:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3172666-3172812:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3172362-3172538:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3172161-3172265:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3171994-3172074:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3171731-3171886:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3169204-3169369:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3168887-3169083:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3166892-3166956:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3166460-3166655:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3165803-3165854:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3165715-3165716:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3165492-3165681:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3164354-3164442:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3164033-3164125:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3163719-3163910:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3163255-3163356:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3163059-3163159:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3162763-3162898:-1:exon

Rbm10
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Rbm10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3193431..3225618)
location: region:3193431-3225618:-1
so has part: feature:3193431-3225618:-1:exon
subclass of: SO_0000010

116888315
type: Gene
SIO_000068: ncbigene

position:3193431:-1
position: 3193431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3225618:-1
position: 3225618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3193431-3225618:-1:exon

Rbm10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Rbm10
product: RNA binding motif protein 10
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_032889588.1
SIO_010081: Rbm10
subclass of: SO_0000673
so part of: Rbm10
location: complement(join(3193431..3193773,3193857..3193986,3194064..3194168,3194453..3194527,3194613..3194801,3194879..3194944,3195039..3195188,3195853..3196017,3196118..3196209,3196293..3196410,3196526..3196665,3196763..3196946,3197945..3198032,3198195..3198292,3198463..3198623,3199007..3199183,3199300..3199360,3201329..3201415,3202982..3203055,3204783..3204852,3206723..3206956,3208498..3208681,3223300..3223439,3225365..3225618))
location: region:3193431-3225618:-1
so has part: feature:3225365-3225618:-1:exon
so has part: feature:3223300-3223439:-1:exon
so has part: feature:3208498-3208681:-1:exon
so has part: feature:3206723-3206956:-1:exon
so has part: feature:3204783-3204852:-1:exon
so has part: feature:3202982-3203055:-1:exon
so has part: feature:3201329-3201415:-1:exon
so has part: feature:3199300-3199360:-1:exon
so has part: feature:3199007-3199183:-1:exon
so has part: feature:3198463-3198623:-1:exon
so has part: feature:3198195-3198292:-1:exon
so has part: feature:3197945-3198032:-1:exon
so has part: feature:3196763-3196946:-1:exon
so has part: feature:3196526-3196665:-1:exon
so has part: feature:3196293-3196410:-1:exon
so has part: feature:3196118-3196209:-1:exon
so has part: feature:3195853-3196017:-1:exon
so has part: feature:3195039-3195188:-1:exon
so has part: feature:3194879-3194944:-1:exon
so has part: feature:3194613-3194801:-1:exon
so has part: feature:3194453-3194527:-1:exon
so has part: feature:3194064-3194168:-1:exon
so has part: feature:3193857-3193986:-1:exon
so has part: feature:3193431-3193773:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3225365-3225618:-1:exon

position:3225365:-1
position: 3225365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3223300-3223439:-1:exon

position:3223300:-1
position: 3223300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3223439:-1
position: 3223439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3208498-3208681:-1:exon

position:3208498:-1
position: 3208498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3208681:-1
position: 3208681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3206723-3206956:-1:exon

position:3206723:-1
position: 3206723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3206956:-1
position: 3206956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3204783-3204852:-1:exon

position:3204783:-1
position: 3204783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3204852:-1
position: 3204852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3202982-3203055:-1:exon

position:3202982:-1
position: 3202982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3203055:-1
position: 3203055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3201329-3201415:-1:exon

position:3201329:-1
position: 3201329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3201415:-1
position: 3201415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3199300-3199360:-1:exon

position:3199300:-1
position: 3199300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3199360:-1
position: 3199360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3199007-3199183:-1:exon

position:3199007:-1
position: 3199007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3199183:-1
position: 3199183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3198463-3198623:-1:exon

position:3198463:-1
position: 3198463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3198623:-1
position: 3198623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3198195-3198292:-1:exon

position:3198195:-1
position: 3198195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3198292:-1
position: 3198292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3197945-3198032:-1:exon

position:3197945:-1
position: 3197945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3198032:-1
position: 3198032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3196763-3196946:-1:exon

position:3196763:-1
position: 3196763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3196946:-1
position: 3196946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3196526-3196665:-1:exon

position:3196526:-1
position: 3196526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3196665:-1
position: 3196665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3196293-3196410:-1:exon

position:3196293:-1
position: 3196293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3196410:-1
position: 3196410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3196118-3196209:-1:exon

position:3196118:-1
position: 3196118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3196209:-1
position: 3196209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3195853-3196017:-1:exon

position:3195853:-1
position: 3195853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3196017:-1
position: 3196017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3195039-3195188:-1:exon

position:3195039:-1
position: 3195039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3195188:-1
position: 3195188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3194879-3194944:-1:exon

position:3194879:-1
position: 3194879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3194944:-1
position: 3194944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3194613-3194801:-1:exon

position:3194613:-1
position: 3194613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3194801:-1
position: 3194801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3194453-3194527:-1:exon

position:3194453:-1
position: 3194453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3194527:-1
position: 3194527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:3194064-3194168:-1:exon

position:3194064:-1
position: 3194064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3194168:-1
position: 3194168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:3193857-3193986:-1:exon

position:3193857:-1
position: 3193857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3193986:-1
position: 3193986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:3193431-3193773:-1:exon

position:3193773:-1
position: 3193773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Rbm10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Rbm10
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: RNA-binding protein 10
translation: MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHEYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEDEEEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMLNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQALPLGGRELSQGLLPLPQPYQAQGVLTSQTLSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGGESTWAAPEEPPVDYSYYQQDEGYGSSQGTDSLYAHGYLKNTKGPGMTGTKGDTSGAGPETSLEGGTDSVSLQAFSRAQPGAAPGLYQQSAEGSSGQGTATNSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAPESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYIPALEQSADGHKDTGASSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISALRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRLAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKXGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
SIO_010081: Rbm10
subclass of: SO_0000673
so part of: Rbm10
location: complement(join(3193648..3193773,3193857..3193986,3194064..3194168,3194453..3194527,3194613..3194801,3194879..3194944,3195039..3195188,3195853..3196017,3196118..3196209,3196293..3196410,3196526..3196665,3196763..3196946,3197945..3198032,3198195..3198292,3198463..3198623,3199007..3199183,3199300..3199360,3201329..3201415,3202982..3203055,3204783..3204852,3206723..3206956,3208498..3208681,3223300..3223316))
location: region:3193648-3223316:-1
so has part: feature:3223300-3223316:-1:exon
so has part: feature:3208498-3208681:-1:exon
so has part: feature:3206723-3206956:-1:exon
so has part: feature:3204783-3204852:-1:exon
so has part: feature:3202982-3203055:-1:exon
so has part: feature:3201329-3201415:-1:exon
so has part: feature:3199300-3199360:-1:exon
so has part: feature:3199007-3199183:-1:exon
so has part: feature:3198463-3198623:-1:exon
so has part: feature:3198195-3198292:-1:exon
so has part: feature:3197945-3198032:-1:exon
so has part: feature:3196763-3196946:-1:exon
so has part: feature:3196526-3196665:-1:exon
so has part: feature:3196293-3196410:-1:exon
so has part: feature:3196118-3196209:-1:exon
so has part: feature:3195853-3196017:-1:exon
so has part: feature:3195039-3195188:-1:exon
so has part: feature:3194879-3194944:-1:exon
so has part: feature:3194613-3194801:-1:exon
so has part: feature:3194453-3194527:-1:exon
so has part: feature:3194064-3194168:-1:exon
so has part: feature:3193857-3193986:-1:exon
so has part: feature:3193648-3193773:-1:exon

XP_032745479.1
type: Protein
SIO_000068: ncbiprotein

position:3193648:-1
position: 3193648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3223316:-1
position: 3223316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3223300-3223316:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3208498-3208681:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3206723-3206956:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3204783-3204852:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3202982-3203055:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3201329-3201415:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3199300-3199360:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3199007-3199183:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3198463-3198623:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3198195-3198292:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3197945-3198032:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3196763-3196946:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3196526-3196665:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3196293-3196410:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3196118-3196209:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3195853-3196017:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3195039-3195188:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3194879-3194944:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3194613-3194801:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3194453-3194527:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3194064-3194168:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3193857-3193986:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3193648-3193773:-1:exon

Ndufb11
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Ndufb11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3225586..3228212
location: region:3225586-3228212:1
so has part: feature:3225586-3228212:1:exon
subclass of: SO_0000010

116888316
type: Gene
SIO_000068: ncbigene

position:3225586:1
position: 3225586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3228212:1
position: 3228212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3225586-3228212:1:exon

Ndufb11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Ndufb11
product: NADH:ubiquinone oxidoreductase subunit B11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 59 ESTs, 6 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032889589.1
SIO_010081: Ndufb11
subclass of: SO_0000673
so part of: Ndufb11
location: join(3225586..3226347,3227691..3227821,3227990..3228212)
location: region:3225586-3228212:1
so has part: feature:3225586-3226347:1:exon
so has part: feature:3227691-3227821:1:exon
so has part: feature:3227990-3228212:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3225586-3226347:1:exon

position:3226347:1
position: 3226347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3227691-3227821:1:exon

position:3227691:1
position: 3227691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3227821:1
position: 3227821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3227990-3228212:1:exon

position:3227990:1
position: 3227990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Ndufb11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Ndufb11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
translation: MAARLLSLYARRLSVAAAIREVPAARVRWESSRAVIAPSGVERKRQREPTMVWQEDPEPEDENLYAKNPDFHGYDSDPVVDVWNMRAVFFFGFSIVLVFGTTFVAYLPDYRMQEWARREAERLVKYRELNGLPIMESNYFDPSKIQLPEDD
SIO_010081: Ndufb11
subclass of: SO_0000673
so part of: Ndufb11
location: join(3226147..3226347,3227691..3227821,3227990..3228113)
location: region:3226147-3228113:1
so has part: feature:3226147-3226347:1:exon
so has part: feature:3227691-3227821:1:exon
so has part: feature:3227990-3228113:1:exon

XP_032745480.1
type: Protein
SIO_000068: ncbiprotein

position:3226147:1
position: 3226147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3228113:1
position: 3228113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3226147-3226347:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3227691-3227821:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3227990-3228113:1:exon

LOC116889549
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889549
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 3229720..3229898
location: region:3229720-3229898:1
so has part: feature:3229720-3229898:1:exon

116889549
type: Gene
SIO_000068: ncbigene

position:3229720:1
position: 3229720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3229898:1
position: 3229898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3229720-3229898:1:exon

LOC116889549
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889549
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116889549
subclass of: SO_0000673
so part of: LOC116889549
location: 3229720..3229898
location: region:3229720-3229898:1
so has part: feature:3229720-3229898:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3229720-3229898:1:exon

LOC116888947
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888947
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3240298..3245349)
location: region:3240298-3245349:-1
so has part: feature:3240298-3245349:-1:exon

116888947
type: Gene
SIO_000068: ncbigene

position:3240298:-1
position: 3240298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3245349:-1
position: 3245349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3240298-3245349:-1:exon

LOC116888947
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888947
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888947
subclass of: SO_0000673
so part of: LOC116888947
location: complement(3240298..3240306)
location: region:3240298-3240306:-1
so has part: feature:3240298-3240306:-1:exon

position:3240306:-1
position: 3240306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3240298-3240306:-1:exon

LOC116888947
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888947
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888947
subclass of: SO_0000673
so part of: LOC116888947
location: complement(3240604..3240665)
location: region:3240604-3240665:-1
so has part: feature:3240604-3240665:-1:exon

position:3240604:-1
position: 3240604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3240665:-1
position: 3240665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3240604-3240665:-1:exon

LOC116888947
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888947
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888947
subclass of: SO_0000673
so part of: LOC116888947
location: complement(3241432..3242143)
location: region:3241432-3242143:-1
so has part: feature:3241432-3242143:-1:exon

position:3241432:-1
position: 3241432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3242143:-1
position: 3242143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3241432-3242143:-1:exon

LOC116888947
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888947
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888947
subclass of: SO_0000673
so part of: LOC116888947
location: complement(3245316..3245349)
location: region:3245316-3245349:-1
so has part: feature:3245316-3245349:-1:exon

position:3245316:-1
position: 3245316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3245316-3245349:-1:exon

LOC116888679
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888679
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3254550..3255296
location: region:3254550-3255296:1
so has part: feature:3254550-3255296:1:exon

116888679
type: Gene
SIO_000068: ncbigene

position:3254550:1
position: 3254550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3255296:1
position: 3255296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3254550-3255296:1:exon

LOC116888679
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888679
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 Proteins, and 32% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888679
subclass of: SO_0000673
so part of: LOC116888679
location: 3254550..3255296
location: region:3254550-3255296:1
so has part: feature:3254550-3255296:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3254550-3255296:1:exon

LOC116889192
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889192
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3261226..3261706
location: region:3261226-3261706:1
so has part: feature:3261226-3261706:1:exon

116889192
type: Gene
SIO_000068: ncbigene

position:3261226:1
position: 3261226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3261706:1
position: 3261706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3261226-3261706:1:exon

LOC116889192
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889192
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 220 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889192
subclass of: SO_0000673
so part of: LOC116889192
location: 3261226..3261706
location: region:3261226-3261706:1
so has part: feature:3261226-3261706:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3261226-3261706:1:exon

Rgn
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Rgn
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3269260..3286712)
location: region:3269260-3286712:-1
so has part: feature:3269260-3286712:-1:exon
subclass of: SO_0000010

116888568
type: Gene
SIO_000068: ncbigene

position:3269260:-1
position: 3269260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3286712:-1
position: 3286712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3269260-3286712:-1:exon

Rgn
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Rgn
product: regucalcin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889872.1
SIO_010081: Rgn
subclass of: SO_0000673
so part of: Rgn
location: complement(join(3269260..3269912,3270779..3270933,3271395..3271526,3273295..3273510,3281662..3281844,3283806..3283984,3286676..3286712))
location: region:3269260-3286712:-1
so has part: feature:3286676-3286712:-1:exon
so has part: feature:3283806-3283984:-1:exon
so has part: feature:3281662-3281844:-1:exon
so has part: feature:3273295-3273510:-1:exon
so has part: feature:3271395-3271526:-1:exon
so has part: feature:3270779-3270933:-1:exon
so has part: feature:3269260-3269912:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3286676-3286712:-1:exon

position:3286676:-1
position: 3286676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3283806-3283984:-1:exon

position:3283806:-1
position: 3283806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3283984:-1
position: 3283984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3281662-3281844:-1:exon

position:3281662:-1
position: 3281662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3281844:-1
position: 3281844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3273295-3273510:-1:exon

position:3273295:-1
position: 3273295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3273510:-1
position: 3273510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3271395-3271526:-1:exon

position:3271395:-1
position: 3271395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3271526:-1
position: 3271526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3270779-3270933:-1:exon

position:3270779:-1
position: 3270779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3270933:-1
position: 3270933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3269260-3269912:-1:exon

position:3269912:-1
position: 3269912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Rgn
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Rgn
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regucalcin
translation: MSRHTSPFPATMSSIKIECVLRENYRCGESPVWEEASKCLLFVDIPSKTVCRWDSISNQVQRVGVDAPVSSVALRQSGGYVATIGTKFCALNWEDQSVFILAMVDEDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGSLYSLFPDHSVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYTVDAFDYDLPTGQISNRRTVYKMEKDEQIPDGMCIDAEGKLWVACYNGGRVIRLDPETGKRLQTVKLPVDKTTSCCFGGKDYSEMYVTCARDGMSAEGLLRQPDAGNIFKITGLGVKGIAPYSYAG
SIO_010081: Rgn
subclass of: SO_0000673
so part of: Rgn
location: complement(join(3269862..3269912,3270779..3270933,3271395..3271526,3273295..3273510,3281662..3281844,3283806..3283984,3286676..3286692))
location: region:3269862-3286692:-1
so has part: feature:3286676-3286692:-1:exon
so has part: feature:3283806-3283984:-1:exon
so has part: feature:3281662-3281844:-1:exon
so has part: feature:3273295-3273510:-1:exon
so has part: feature:3271395-3271526:-1:exon
so has part: feature:3270779-3270933:-1:exon
so has part: feature:3269862-3269912:-1:exon

XP_032745763.1
type: Protein
SIO_000068: ncbiprotein

position:3269862:-1
position: 3269862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3286692:-1
position: 3286692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3286676-3286692:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3283806-3283984:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3281662-3281844:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3273295-3273510:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3271395-3271526:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3270779-3270933:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3269862-3269912:-1:exon

LOC116888540
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888540
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3290530..3292076)
location: region:3290530-3292076:-1
so has part: feature:3290530-3292076:-1:exon
subclass of: SO_0000010

116888540
type: Gene
SIO_000068: ncbigene

position:3290530:-1
position: 3290530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3292076:-1
position: 3292076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3290530-3292076:-1:exon

LOC116888540
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888540
product: ruvB-like 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 14 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889845.1
SIO_010081: LOC116888540
subclass of: SO_0000673
so part of: LOC116888540
location: complement(3290530..3292076)
location: region:3290530-3292076:-1
so has part: feature:3290530-3292076:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3290530-3292076:-1:exon

LOC116888540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888540
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ruvB-like 1
translation: MKIEEVKSTTKTQRIASHSHVKGLGLDESSLAKQAASGLVGQENSREACGVTVELIKSKKMAGTAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYXTEIKKTEVLMENFRRAIGLWIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQDRCDTYATEFDLEAEECVPLPKGDVHKKKEIIQDVTLHXDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLFVNKVHMLDIECFTFLHRALESSIAPIVIFASNRGTCVIRGTEDITSPHGIPLDLLDRAMIIRTMLYTPQEMKQIINIRGQTEGINISEEALNHLGEIGTKTTLRYSVQLVTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQEKYMK
SIO_010081: LOC116888540
subclass of: SO_0000673
so part of: LOC116888540
location: complement(3290711..3292076)
location: region:3290711-3292076:-1
so has part: feature:3290711-3292076:-1:exon

XP_032745736.1
type: Protein
SIO_000068: ncbiprotein

position:3290711:-1
position: 3290711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3290711-3292076:-1:exon

Slc9a7
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Slc9a7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3323083..3954751)
location: region:3323083-3954751:-1
so has part: feature:3323083-3954751:-1:exon
subclass of: SO_0000010

116888698
type: Gene
SIO_000068: ncbigene

position:3323083:-1
position: 3323083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3954751:-1
position: 3954751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3323083-3954751:-1:exon

Slc9a7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Slc9a7
product: solute carrier family 9 member A7
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_032889988.1
SIO_010081: Slc9a7
subclass of: SO_0000673
so part of: Slc9a7
location: complement(join(3323083..3324138,3325753..3325858,3341919..3342001,3827143..3827206,3834061..3834120,3844662..3844815,3845464..3845575,3847727..3847840,3847943..3848031,3848259..3848364,3850667..3850808,3851768..3851873,3860329..3860441,3863060..3863136,3879834..3879910,3882144..3882343,3954287..3954751))
location: region:3323083-3954751:-1
so has part: feature:3954287-3954751:-1:exon
so has part: feature:3882144-3882343:-1:exon
so has part: feature:3879834-3879910:-1:exon
so has part: feature:3863060-3863136:-1:exon
so has part: feature:3860329-3860441:-1:exon
so has part: feature:3851768-3851873:-1:exon
so has part: feature:3850667-3850808:-1:exon
so has part: feature:3848259-3848364:-1:exon
so has part: feature:3847943-3848031:-1:exon
so has part: feature:3847727-3847840:-1:exon
so has part: feature:3845464-3845575:-1:exon
so has part: feature:3844662-3844815:-1:exon
so has part: feature:3834061-3834120:-1:exon
so has part: feature:3827143-3827206:-1:exon
so has part: feature:3341919-3342001:-1:exon
so has part: feature:3325753-3325858:-1:exon
so has part: feature:3323083-3324138:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3954287-3954751:-1:exon

position:3954287:-1
position: 3954287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3882144-3882343:-1:exon

position:3882144:-1
position: 3882144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3882343:-1
position: 3882343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3879834-3879910:-1:exon

position:3879834:-1
position: 3879834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3879910:-1
position: 3879910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3863060-3863136:-1:exon

position:3863060:-1
position: 3863060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3863136:-1
position: 3863136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3860329-3860441:-1:exon

position:3860329:-1
position: 3860329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3860441:-1
position: 3860441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3851768-3851873:-1:exon

position:3851768:-1
position: 3851768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3851873:-1
position: 3851873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3850667-3850808:-1:exon

position:3850667:-1
position: 3850667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3850808:-1
position: 3850808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3848259-3848364:-1:exon

position:3848259:-1
position: 3848259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3848364:-1
position: 3848364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3847943-3848031:-1:exon

position:3847943:-1
position: 3847943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3848031:-1
position: 3848031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3847727-3847840:-1:exon

position:3847727:-1
position: 3847727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3847840:-1
position: 3847840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3845464-3845575:-1:exon

position:3845464:-1
position: 3845464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3845575:-1
position: 3845575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3844662-3844815:-1:exon

position:3844662:-1
position: 3844662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3844815:-1
position: 3844815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3834061-3834120:-1:exon

position:3834061:-1
position: 3834061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3834120:-1
position: 3834120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3827143-3827206:-1:exon

position:3827143:-1
position: 3827143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3827206:-1
position: 3827206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3341919-3342001:-1:exon

position:3341919:-1
position: 3341919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3342001:-1
position: 3342001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3325753-3325858:-1:exon

position:3325753:-1
position: 3325753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3325858:-1
position: 3325858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3323083-3324138:-1:exon

position:3324138:-1
position: 3324138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Slc9a7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Slc9a7
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: sodium/hydrogen exchanger 7
translation: MEPSDAARPGPGRAVPGLSPRLLLLPLLPMLLGRGLLAGAAASSSGAAAEDSSAMEELATEKEAEESHRQDSVSLLTFILLLTLTILTIWLFKHRRVRFLHETGLAMIYGLIVGVILRYGTPATSGHDKSLSCTQEDRAFSTLLVNVSGKFFEYTLKGEISPGKINNVEQNDMLRKVTFDPEVXFNILLPPIIFHAGYSLKKRHFFRNLGSILAYAFLGTAVSCFIIGNLMYGVVKLMKIVGQLSDKFYYTDCLFFGAIISATDPVTVLAIFNELHADVDLYALLFGESVLNDAVAIVLSSSIVAYQPAGLNTHAFDAAAFFKSVGIFLGIFSGSFTMGTVTGVVTALVTKFTKLHCFPLLETALFFLMSWSTFLLAEACGFTGVVAVLFCGITQAHYTYNNLSVESRSRSKQLFEVLHFLAENFIFSYMGLALFTFQKHVFSPIFIIGAFVAIFLGRAAHIYPLSFFLNLGRRHKIGWNFQHMMMFSGLRGAMAFALAIRDTASYSRQMMFTTTLLIVFFTVWVIGGGTTPMLSWLNIRVGVEELSEEDQNEHRWQYFRVGVDPDQDPPPNNDSFQVLQGDGLDSVGGSRTKQESAWIFRLWYSFDHNYLKPILTHSGPPLTTTLPAWCGLMARCLTSPQVYDNQEPLREDDSDFILTEGDLTLTYGDSTVTANGSSSSYTASTSLECGRRTKSSSEEVLERDLGMGDQKVSSRGTPLVFPLQENA
SIO_010081: Slc9a7
subclass of: SO_0000673
so part of: Slc9a7
location: complement(join(3323887..3324138,3325753..3325858,3341919..3342001,3827143..3827206,3834061..3834120,3844662..3844815,3845464..3845575,3847727..3847840,3847943..3848031,3848259..3848364,3850667..3850808,3851768..3851873,3860329..3860441,3863060..3863136,3879834..3879910,3882144..3882343,3954287..3954614))
location: region:3323887-3954614:-1
so has part: feature:3954287-3954614:-1:exon
so has part: feature:3882144-3882343:-1:exon
so has part: feature:3879834-3879910:-1:exon
so has part: feature:3863060-3863136:-1:exon
so has part: feature:3860329-3860441:-1:exon
so has part: feature:3851768-3851873:-1:exon
so has part: feature:3850667-3850808:-1:exon
so has part: feature:3848259-3848364:-1:exon
so has part: feature:3847943-3848031:-1:exon
so has part: feature:3847727-3847840:-1:exon
so has part: feature:3845464-3845575:-1:exon
so has part: feature:3844662-3844815:-1:exon
so has part: feature:3834061-3834120:-1:exon
so has part: feature:3827143-3827206:-1:exon
so has part: feature:3341919-3342001:-1:exon
so has part: feature:3325753-3325858:-1:exon
so has part: feature:3323887-3324138:-1:exon

XP_032745879.1
type: Protein
SIO_000068: ncbiprotein

position:3323887:-1
position: 3323887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3954614:-1
position: 3954614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3954287-3954614:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3882144-3882343:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3879834-3879910:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3863060-3863136:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3860329-3860441:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3851768-3851873:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3850667-3850808:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3848259-3848364:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3847943-3848031:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3847727-3847840:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3845464-3845575:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3844662-3844815:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3834061-3834120:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3827143-3827206:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3341919-3342001:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3325753-3325858:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3323887-3324138:-1:exon

LOC116888703
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888703
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3370096..3411644
location: region:3370096-3411644:1
so has part: feature:3370096-3411644:1:exon
subclass of: SO_0000010

116888703
type: Gene
SIO_000068: ncbigene

position:3370096:1
position: 3370096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3411644:1
position: 3411644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3370096-3411644:1:exon

LOC116888703
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888703
product: protein Jade-3-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_032889992.1
SIO_010081: LOC116888703
subclass of: SO_0000673
so part of: LOC116888703
location: join(3370096..3370167,3371012..3371091,3401163..3401320,3410428..3411644)
location: region:3370096-3411644:1
so has part: feature:3370096-3370167:1:exon
so has part: feature:3371012-3371091:1:exon
so has part: feature:3401163-3401320:1:exon
so has part: feature:3410428-3411644:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3370096-3370167:1:exon

position:3370167:1
position: 3370167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3371012-3371091:1:exon

position:3371012:1
position: 3371012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3371091:1
position: 3371091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3401163-3401320:1:exon

position:3401163:1
position: 3401163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3401320:1
position: 3401320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3410428-3411644:1:exon

position:3410428:1
position: 3410428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888703
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888703
product: protein Jade-3-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_032889991.1
SIO_010081: LOC116888703
subclass of: SO_0000673
so part of: LOC116888703
location: join(3370096..3370167,3371012..3371091,3401163..3402164)
location: region:3370096-3402164:1
so has part: feature:3370096-3370167:1:exon
so has part: feature:3371012-3371091:1:exon
so has part: feature:3401163-3402164:1:exon

position:3402164:1
position: 3402164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3370096-3370167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3371012-3371091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3401163-3402164:1:exon

LOC116888703
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888703
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Jade-3-like isoform X2
translation: MMKRHRPVSSSESSDECPSTSFTSGSMYRKKSKNPKEHKKSAEVFRKDLISAMKIPDSHHVNPDSYYLFTDTWKEEWEKGVQVPANPDSVPTPSLRSRNRTLPTPQKPFFCSLPVTDLPHRR
SIO_010081: LOC116888703
subclass of: SO_0000673
so part of: LOC116888703
location: join(3370119..3370167,3371012..3371091,3401163..3401320,3410428..3410509)
location: region:3370119-3410509:1
so has part: feature:3370119-3370167:1:exon
so has part: feature:3371012-3371091:1:exon
so has part: feature:3401163-3401320:1:exon
so has part: feature:3410428-3410509:1:exon

XP_032745883.1
type: Protein
SIO_000068: ncbiprotein

position:3370119:1
position: 3370119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3410509:1
position: 3410509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3370119-3370167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3371012-3371091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3401163-3401320:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3410428-3410509:1:exon

LOC116888703
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888703
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Jade-3-like isoform X1
translation: MMKRHRPVSSSESSDECPSTSFTSGSMYRKKSKNPKEHKKSAEVFRKDLISAMKIPDSHHVNPDSYYLFTDTWKEEWEKGVQVPANPDSVPTPSLRYWHVYNFDLGKELSWFSLYFLGRNLRVSIHF
SIO_010081: LOC116888703
subclass of: SO_0000673
so part of: LOC116888703
location: join(3370119..3370167,3371012..3371091,3401163..3401417)
location: region:3370119-3401417:1
so has part: feature:3370119-3370167:1:exon
so has part: feature:3371012-3371091:1:exon
so has part: feature:3401163-3401417:1:exon

XP_032745882.1
type: Protein
SIO_000068: ncbiprotein

position:3401417:1
position: 3401417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3370119-3370167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3371012-3371091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3401163-3401417:1:exon

LOC116888700
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888700
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3656829..3658506
location: region:3656829-3658506:1
so has part: feature:3656829-3658506:1:exon
subclass of: SO_0000010

116888700
type: Gene
SIO_000068: ncbigene

position:3656829:1
position: 3656829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3658506:1
position: 3658506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3656829-3658506:1:exon

LOC116888700
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888700
product: zinc finger protein 81-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889990.1
SIO_010081: LOC116888700
subclass of: SO_0000673
so part of: LOC116888700
location: 3656829..3658506
location: region:3656829-3658506:1
so has part: feature:3656829-3658506:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3656829-3658506:1:exon

LOC116888700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888700
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 81-like
translation: MCLGTNLTQKSYTFTSSRIHNVEKHPELSKCINVFTQKPLLSICLRFHRDEKLYICTNCGKAFIQNSELKMHEKTHTREKLYKCSECGKSFYQLPSLHRHQTIHSEEKFYSCSECGKDFSLSSALNIHQKIHTRERHHKCNECGKAFTQKSTLRMHQRIHTGERSYICTKCGQGFIQKAHLIAHQRIHTGEKPYQCSDCGKSFPSKSQLQMHKRIHTGEKPYICTECGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPHVCANCGRAFIQKSQLITHQKIHIMEKPYKCPDCEKSFFKKPHLKVHQRIHTGEKPYICAKCGKAFTDRSNFNKHQTVHTGDKPYKCSECGKGFTQKSVLSIHRSIHT
SIO_010081: LOC116888700
subclass of: SO_0000673
so part of: LOC116888700
location: 3656956..3658113
location: region:3656956-3658113:1
so has part: feature:3656956-3658113:1:exon

XP_032745881.1
type: Protein
SIO_000068: ncbiprotein

position:3656956:1
position: 3656956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3658113:1
position: 3658113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3656956-3658113:1:exon

LOC116889499
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889499
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 3670835..3670966
location: region:3670835-3670966:1
so has part: feature:3670835-3670966:1:exon

116889499
type: Gene
SIO_000068: ncbigene

position:3670835:1
position: 3670835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3670966:1
position: 3670966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3670835-3670966:1:exon

LOC116889499
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889499
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00554
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116889499
subclass of: SO_0000673
so part of: LOC116889499
location: 3670835..3670966
location: region:3670835-3670966:1
so has part: feature:3670835-3670966:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3670835-3670966:1:exon

Chst7
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Chst7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3783841..3785425
location: region:3783841-3785425:1
so has part: feature:3783841-3785425:1:exon
subclass of: SO_0000010

116888699
type: Gene
SIO_000068: ncbigene

position:3783841:1
position: 3783841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3785425:1
position: 3785425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3783841-3785425:1:exon

Chst7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Chst7
product: carbohydrate sulfotransferase 7
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889989.1
SIO_010081: Chst7
subclass of: SO_0000673
so part of: Chst7
location: 3783841..3785425
location: region:3783841-3785425:1
so has part: feature:3783841-3785425:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3783841-3785425:1:exon

Chst7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Chst7
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: carbohydrate sulfotransferase 7
translation: MKGRRRRRREYCKFTLLLALYTLLLLLVPSVLDSGSEQDKGQGLPGLQRSLGVWSLEAAAAGEREQGAEVRFQAEGNPDRSPRPRGNLSAVGESVTQEKQHIYVHATWRTGSSFLGELFNQHPDVFYLYEPMWHLWQALYPGDAESLQGALRDMLRSLFRCDFSVLRLYAQPGDPAERAPDSANLTTAMLFRWRTNKVICSPPLCPAAPRARADVGLVEDKACESTCPPVPLRALEAECRKYRVVVIKDVRLLDLGVLVPLLRDPGLNLKVVQLFRDPRAVHNSRLKSRHGLLRESIQVLRTRQRGDRFQRVLLAHGVGARPGGQARALPSAPRADFFLTSALEVICEAWLRDLLFTRGAPAWLRRRYLRLRYEDLVWQPQVQLRRLLRFSGLRTLAALDAFAFNMTRGSAYGADRPFHLSARDAREAVHAWRERLSQEQVRQVEAACDPAMRLLAYPHSGDERDVKTVRKGETPLETKANWAT
SIO_010081: Chst7
subclass of: SO_0000673
so part of: Chst7
location: 3783935..3785391
location: region:3783935-3785391:1
so has part: feature:3783935-3785391:1:exon

XP_032745880.1
type: Protein
SIO_000068: ncbiprotein

position:3783935:1
position: 3783935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3785391:1
position: 3785391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3783935-3785391:1:exon

LOC116889558
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889558
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(3842558..3842670)
location: region:3842558-3842670:-1
so has part: feature:3842558-3842670:-1:exon

116889558
type: Gene
SIO_000068: ncbigene

position:3842558:-1
position: 3842558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3842670:-1
position: 3842670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3842558-3842670:-1:exon

LOC116889558
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889558
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116889558
subclass of: SO_0000673
so part of: LOC116889558
location: complement(3842558..3842670)
location: region:3842558-3842670:-1
so has part: feature:3842558-3842670:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3842558-3842670:-1:exon

LOC116888702
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888702
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3886673..3887685
location: region:3886673-3887685:1
so has part: feature:3886673-3887685:1:exon

116888702
type: Gene
SIO_000068: ncbigene

position:3886673:1
position: 3886673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3887685:1
position: 3887685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3886673-3887685:1:exon

LOC116888702
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888702
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 445 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888702
subclass of: SO_0000673
so part of: LOC116888702
location: 3886673..3887685
location: region:3886673-3887685:1
so has part: feature:3886673-3887685:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3886673-3887685:1:exon

LOC116888948
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888948
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4021628..4023096
location: region:4021628-4023096:1
so has part: feature:4021628-4023096:1:exon

116888948
type: Gene
SIO_000068: ncbigene

position:4021628:1
position: 4021628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4023096:1
position: 4023096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4021628-4023096:1:exon

LOC116888948
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888948
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888948
subclass of: SO_0000673
so part of: LOC116888948
location: 4021628..4021699
location: region:4021628-4021699:1
so has part: feature:4021628-4021699:1:exon

position:4021699:1
position: 4021699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4021628-4021699:1:exon

LOC116888948
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888948
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888948
subclass of: SO_0000673
so part of: LOC116888948
location: 4021995..4022343
location: region:4021995-4022343:1
so has part: feature:4021995-4022343:1:exon

position:4021995:1
position: 4021995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4022343:1
position: 4022343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4021995-4022343:1:exon

LOC116888948
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888948
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888948
subclass of: SO_0000673
so part of: LOC116888948
location: 4022798..4022932
location: region:4022798-4022932:1
so has part: feature:4022798-4022932:1:exon

position:4022798:1
position: 4022798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4022932:1
position: 4022932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4022798-4022932:1:exon

LOC116888948
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888948
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116888948
subclass of: SO_0000673
so part of: LOC116888948
location: 4023070..4023096
location: region:4023070-4023096:1
so has part: feature:4023070-4023096:1:exon

position:4023070:1
position: 4023070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4023070-4023096:1:exon

LOC116889429
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889429
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4202614..4202716)
location: region:4202614-4202716:-1
so has part: feature:4202614-4202716:-1:exon
subclass of: SO_0000623

116889429
type: Gene
SIO_000068: ncbigene

position:4202614:-1
position: 4202614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4202716:-1
position: 4202716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4202614-4202716:-1:exon

LOC116889429
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: snRNA
gene: LOC116889429
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004386393.1
SIO_010081: LOC116889429
subclass of: SO_0000673
so part of: LOC116889429
location: complement(4202614..4202716)
location: region:4202614-4202716:-1
so has part: feature:4202614-4202716:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4202614-4202716:-1:exon

LOC116888951
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888951
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4296758..4297247)
location: region:4296758-4297247:-1
so has part: feature:4296758-4297247:-1:exon

116888951
type: Gene
SIO_000068: ncbigene

position:4296758:-1
position: 4296758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4297247:-1
position: 4297247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4296758-4297247:-1:exon

LOC116888951
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888951
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
pseudo: true
SIO_010081: LOC116888951
subclass of: SO_0000673
so part of: LOC116888951
location: complement(4296758..4297247)
location: region:4296758-4297247:-1
so has part: feature:4296758-4297247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4296758-4297247:-1:exon

LOC116888953
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4496586..4516996
location: region:4496586-4516996:1
so has part: feature:4496586-4516996:1:exon

116888953
type: Gene
SIO_000068: ncbigene

position:4496586:1
position: 4496586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4516996:1
position: 4516996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4496586-4516996:1:exon

LOC116888953
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888953
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC116888953
subclass of: SO_0000673
so part of: LOC116888953
location: 4496586..4496795
location: region:4496586-4496795:1
so has part: feature:4496586-4496795:1:exon

position:4496795:1
position: 4496795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4496586-4496795:1:exon

LOC116888953
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888953
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC116888953
subclass of: SO_0000673
so part of: LOC116888953
location: 4497502..4497575
location: region:4497502-4497575:1
so has part: feature:4497502-4497575:1:exon

position:4497502:1
position: 4497502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4497575:1
position: 4497575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4497502-4497575:1:exon

LOC116888953
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888953
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC116888953
subclass of: SO_0000673
so part of: LOC116888953
location: 4516388..4516996
location: region:4516388-4516996:1
so has part: feature:4516388-4516996:1:exon

position:4516388:1
position: 4516388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4516388-4516996:1:exon

Fundc1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Fundc1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4663804..4679310)
location: region:4663804-4679310:-1
so has part: feature:4663804-4679310:-1:exon
subclass of: SO_0000010

116888756
type: Gene
SIO_000068: ncbigene

position:4663804:-1
position: 4663804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4679310:-1
position: 4679310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4663804-4679310:-1:exon

Fundc1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Fundc1
product: FUN14 domain containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032890050.1
SIO_010081: Fundc1
subclass of: SO_0000673
so part of: Fundc1
location: complement(join(4663804..4664289,4664931..4665059,4674901..4674976,4678278..4678434,4679125..4679310))
location: region:4663804-4679310:-1
so has part: feature:4679125-4679310:-1:exon
so has part: feature:4678278-4678434:-1:exon
so has part: feature:4674901-4674976:-1:exon
so has part: feature:4664931-4665059:-1:exon
so has part: feature:4663804-4664289:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4679125-4679310:-1:exon

position:4679125:-1
position: 4679125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4678278-4678434:-1:exon

position:4678278:-1
position: 4678278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4678434:-1
position: 4678434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4674901-4674976:-1:exon

position:4674901:-1
position: 4674901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4674976:-1
position: 4674976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4664931-4665059:-1:exon

position:4664931:-1
position: 4664931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4665059:-1
position: 4665059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4663804-4664289:-1:exon

position:4664289:-1
position: 4664289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Fundc1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Fundc1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FUN14 domain-containing protein 1
translation: MASRNPPPQDYESDDESYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQVASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNIIEEATDFIKQNIVISSGFVGGFLLGLAS
SIO_010081: Fundc1
subclass of: SO_0000673
so part of: Fundc1
location: complement(join(4664212..4664289,4664931..4665059,4674901..4674976,4678278..4678434,4679125..4679152))
location: region:4664212-4679152:-1
so has part: feature:4679125-4679152:-1:exon
so has part: feature:4678278-4678434:-1:exon
so has part: feature:4674901-4674976:-1:exon
so has part: feature:4664931-4665059:-1:exon
so has part: feature:4664212-4664289:-1:exon

XP_032745941.1
type: Protein
SIO_000068: ncbiprotein

position:4664212:-1
position: 4664212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4679152:-1
position: 4679152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4679125-4679152:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4678278-4678434:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4674901-4674976:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4664931-4665059:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4664212-4664289:-1:exon

LOC116888955
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888955
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4681745..4683187
location: region:4681745-4683187:1
so has part: feature:4681745-4683187:1:exon
subclass of: SO_0000010

116888955
type: Gene
SIO_000068: ncbigene

position:4681745:1
position: 4681745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4683187:1
position: 4683187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4681745-4683187:1:exon

LOC116888955
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888955
product: PRAME family member 20-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
transcript id: XM_032890183.1
SIO_010081: LOC116888955
subclass of: SO_0000673
so part of: LOC116888955
location: 4681745..4683187
location: region:4681745-4683187:1
so has part: feature:4681745-4683187:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4681745-4683187:1:exon

LOC116888955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888955
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: PRAME family member 20-like
translation: MNIQTPPTLQELAVRSLLRNEAMAMFYLGELPAVLFPEVFKEAFARRHINIVKEMVAVWPFPRLAVGALMETPNLEIYKALLDGVDMELKEEFQHREKNLKVLDLRNVHHTFWNICADEGKSGCSSETLDKKQAVKVFPRYALRQRLRVIADLSLKLSLNKTQAYFLNWVQQRKSSLHFCCIKMKIWSLPFQDIKGILNVFDKEQIAELELHTKWTLLQLRHFAHYFGQMRNLRKLILAPLHMTTFSTIERTRVRETRSVNNFISQFSQFNCLQHLFMSQVHFLRVQMHQILGCLMTRLETLSITNYITSQRDLNFLSCCESLFQLKHLDLRGTVLYSLDLMPLRALLHKVEDTLEILQLEGCRMIDSQLNALLPALGQCSQLTKINLYKNDFSMHILRALLQHTDNWNKIVVEQYPAPLECYELSHVSRERFSQLCSQLMATLRAIRQPKNIAFASKMCQRCAKHCVYTQVTRLCRCWH
SIO_010081: LOC116888955
subclass of: SO_0000673
so part of: LOC116888955
location: 4681745..4683187
location: region:4681745-4683187:1
so has part: feature:4681745-4683187:1:exon

XP_032746074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4681745-4683187:1:exon

Efhc2
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Efhc2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4703847..4900147)
location: region:4703847-4900147:-1
so has part: feature:4703847-4900147:-1:exon
subclass of: SO_0000010

116889208
type: Gene
SIO_000068: ncbigene

position:4703847:-1
position: 4703847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4900147:-1
position: 4900147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4703847-4900147:-1:exon

Efhc2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Efhc2
product: EF-hand domain containing 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890363.1
SIO_010081: Efhc2
subclass of: SO_0000673
so part of: Efhc2
location: complement(join(4703847..4704168,4724578..4724683,4736429..4736511,4737756..4737962,4781069..4781199,4784831..4785027,4788049..4788191,4796707..4796872,4803616..4803754,4804467..4804580,4815027..4815278,4818339..4818562,4829834..4829984,4871563..4871751,4900016..4900147))
location: region:4703847-4900147:-1
so has part: feature:4900016-4900147:-1:exon
so has part: feature:4871563-4871751:-1:exon
so has part: feature:4829834-4829984:-1:exon
so has part: feature:4818339-4818562:-1:exon
so has part: feature:4815027-4815278:-1:exon
so has part: feature:4804467-4804580:-1:exon
so has part: feature:4803616-4803754:-1:exon
so has part: feature:4796707-4796872:-1:exon
so has part: feature:4788049-4788191:-1:exon
so has part: feature:4784831-4785027:-1:exon
so has part: feature:4781069-4781199:-1:exon
so has part: feature:4737756-4737962:-1:exon
so has part: feature:4736429-4736511:-1:exon
so has part: feature:4724578-4724683:-1:exon
so has part: feature:4703847-4704168:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4900016-4900147:-1:exon

position:4900016:-1
position: 4900016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4871563-4871751:-1:exon

position:4871563:-1
position: 4871563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4871751:-1
position: 4871751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4829834-4829984:-1:exon

position:4829834:-1
position: 4829834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4829984:-1
position: 4829984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4818339-4818562:-1:exon

position:4818339:-1
position: 4818339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4818562:-1
position: 4818562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4815027-4815278:-1:exon

position:4815027:-1
position: 4815027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4815278:-1
position: 4815278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4804467-4804580:-1:exon

position:4804467:-1
position: 4804467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4804580:-1
position: 4804580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4803616-4803754:-1:exon

position:4803616:-1
position: 4803616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4803754:-1
position: 4803754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4796707-4796872:-1:exon

position:4796707:-1
position: 4796707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4796872:-1
position: 4796872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4788049-4788191:-1:exon

position:4788049:-1
position: 4788049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4788191:-1
position: 4788191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4784831-4785027:-1:exon

position:4784831:-1
position: 4784831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4785027:-1
position: 4785027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4781069-4781199:-1:exon

position:4781069:-1
position: 4781069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4781199:-1
position: 4781199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4737756-4737962:-1:exon

position:4737756:-1
position: 4737756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4737962:-1
position: 4737962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4736429-4736511:-1:exon

position:4736429:-1
position: 4736429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4736511:-1
position: 4736511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4724578-4724683:-1:exon

position:4724578:-1
position: 4724578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4724683:-1
position: 4724683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4703847-4704168:-1:exon

position:4704168:-1
position: 4704168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Efhc2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Efhc2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(4737761..4737763),aa:OTHER)
product: LOW QUALITY PROTEIN: EF-hand domain-containing family member C2
translation: MALPLLPGNSFNRNIGKEKFHRSQHWGFCNNVRMLVSEDKPGIGGDLLPGQKIKPKHSVFPKGDGTDAPSWVAFDKQVLSFDAYLEDEVPDKRQENFRIRYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYTVYDFNINISVVFYGRTFKIYDCDPFTKNFLRKIGIKLNPPGQRPFDPYMKMRRETLEFVDPFRPYHSFDTLKRFLQYDGKVLRFFCLWDDSASLFGDRREFVLHYFLCDDTIEIREILPSNSGRDAMSSFLRRSKLPKFGPPGIYQPGQITDRAVLNVYGGLSEWRADGYLLDKYQLGKIEQDFYTDQDLSIGATINVWGRKVLLCDCDEFTKTYYKTKYGVDNFTPISCKPPPLPKIKRKYPPYTGFGSEEDSFRSCVSLKPTPHRKNFRKFMELDSFGNVSNILRYFAKLITHKCADVDRMFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGQEVFKSEFSEYVKAEELFIGATVNINGYLFLLLNADEYTLNYMESNTDRFPYSNFELAIQKLKHEKSKSREITQVFAAADYNHTKVVPYNTFRDILMSITMGNLIDQELITIARHYRVPEVMDPDLAYLIAQAHEKFKKNMFENFDMFIYNCVYEDRERXDLCITTDIRCYKSSELPLSDDFXDCLLSGKFEDKDQQINYEIFFSLLNWRMNPTPDLQAPPYLKEKCEDVWVGMPSPIPVRYVRYLDFLTDVYGLEENMP
SIO_010081: Efhc2
subclass of: SO_0000673
so part of: Efhc2
location: complement(join(4704061..4704168,4724578..4724683,4736429..4736511,4737756..4737962,4781069..4781199,4784831..4785027,4788049..4788191,4796707..4796872,4803616..4803754,4804467..4804580,4815027..4815278,4818339..4818562,4829834..4829984,4871563..4871751,4900016..4900057))
location: region:4704061-4900057:-1
so has part: feature:4900016-4900057:-1:exon
so has part: feature:4871563-4871751:-1:exon
so has part: feature:4829834-4829984:-1:exon
so has part: feature:4818339-4818562:-1:exon
so has part: feature:4815027-4815278:-1:exon
so has part: feature:4804467-4804580:-1:exon
so has part: feature:4803616-4803754:-1:exon
so has part: feature:4796707-4796872:-1:exon
so has part: feature:4788049-4788191:-1:exon
so has part: feature:4784831-4785027:-1:exon
so has part: feature:4781069-4781199:-1:exon
so has part: feature:4737756-4737962:-1:exon
so has part: feature:4736429-4736511:-1:exon
so has part: feature:4724578-4724683:-1:exon
so has part: feature:4704061-4704168:-1:exon

XP_032746254.1
type: Protein
SIO_000068: ncbiprotein

position:4704061:-1
position: 4704061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4900057:-1
position: 4900057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4900016-4900057:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4871563-4871751:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4829834-4829984:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4818339-4818562:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4815027-4815278:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4804467-4804580:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4803616-4803754:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4796707-4796872:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4788049-4788191:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4784831-4785027:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4781069-4781199:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4737756-4737962:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4736429-4736511:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4724578-4724683:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4704061-4704168:-1:exon

LOC116889209
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889209
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4900033..4930905
location: region:4900033-4930905:1
so has part: feature:4900033-4930905:1:exon
subclass of: SO_0000011

116889209
type: Gene
SIO_000068: ncbigene

position:4900033:1
position: 4900033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4930905:1
position: 4930905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4900033-4930905:1:exon

LOC116889209
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116889209
product: uncharacterized LOC116889209
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004386368.1
SIO_010081: LOC116889209
subclass of: SO_0000673
so part of: LOC116889209
location: join(4900033..4900163,4901298..4901395,4930092..4930905)
location: region:4900033-4930905:1
so has part: feature:4900033-4900163:1:exon
so has part: feature:4901298-4901395:1:exon
so has part: feature:4930092-4930905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4900033-4900163:1:exon

position:4900163:1
position: 4900163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4901298-4901395:1:exon

position:4901298:1
position: 4901298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4901395:1
position: 4901395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4930092-4930905:1:exon

position:4930092:1
position: 4930092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116889207
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889207
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4923181..4923882)
location: region:4923181-4923882:-1
so has part: feature:4923181-4923882:-1:exon

116889207
type: Gene
SIO_000068: ncbigene

position:4923181:-1
position: 4923181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4923882:-1
position: 4923882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4923181-4923882:-1:exon

LOC116889207
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889207
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889207
subclass of: SO_0000673
so part of: LOC116889207
location: complement(4923181..4923882)
location: region:4923181-4923882:-1
so has part: feature:4923181-4923882:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4923181-4923882:-1:exon

Maoa
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Maoa
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4968342..5035254
location: region:4968342-5035254:1
so has part: feature:4968342-5035254:1:exon
subclass of: SO_0000010

116888390
type: Gene
SIO_000068: ncbigene

position:4968342:1
position: 4968342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5035254:1
position: 5035254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4968342-5035254:1:exon

Maoa
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Maoa
product: monoamine oxidase A
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 ESTs, 16 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889664.1
SIO_010081: Maoa
subclass of: SO_0000673
so part of: Maoa
location: join(4968342..4968478,4982427..4982521,4987471..4987608,5012981..5013092,5013794..5013885,5016999..5017140,5019306..5019455,5020212..5020371,5021159..5021255,5025548..5025601,5029161..5029218,5030485..5030582,5032019..5032129,5032986..5033048,5033219..5035254)
location: region:4968342-5035254:1
so has part: feature:4968342-4968478:1:exon
so has part: feature:4982427-4982521:1:exon
so has part: feature:4987471-4987608:1:exon
so has part: feature:5012981-5013092:1:exon
so has part: feature:5013794-5013885:1:exon
so has part: feature:5016999-5017140:1:exon
so has part: feature:5019306-5019455:1:exon
so has part: feature:5020212-5020371:1:exon
so has part: feature:5021159-5021255:1:exon
so has part: feature:5025548-5025601:1:exon
so has part: feature:5029161-5029218:1:exon
so has part: feature:5030485-5030582:1:exon
so has part: feature:5032019-5032129:1:exon
so has part: feature:5032986-5033048:1:exon
so has part: feature:5033219-5035254:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4968342-4968478:1:exon

position:4968478:1
position: 4968478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4982427-4982521:1:exon

position:4982427:1
position: 4982427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4982521:1
position: 4982521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4987471-4987608:1:exon

position:4987471:1
position: 4987471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4987608:1
position: 4987608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5012981-5013092:1:exon

position:5012981:1
position: 5012981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5013092:1
position: 5013092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5013794-5013885:1:exon

position:5013794:1
position: 5013794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5013885:1
position: 5013885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5016999-5017140:1:exon

position:5016999:1
position: 5016999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5017140:1
position: 5017140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5019306-5019455:1:exon

position:5019306:1
position: 5019306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5019455:1
position: 5019455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5020212-5020371:1:exon

position:5020212:1
position: 5020212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5020371:1
position: 5020371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5021159-5021255:1:exon

position:5021159:1
position: 5021159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5021255:1
position: 5021255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5025548-5025601:1:exon

position:5025548:1
position: 5025548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5025601:1
position: 5025601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5029161-5029218:1:exon

position:5029161:1
position: 5029161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5029218:1
position: 5029218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5030485-5030582:1:exon

position:5030485:1
position: 5030485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5030582:1
position: 5030582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5032019-5032129:1:exon

position:5032019:1
position: 5032019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5032129:1
position: 5032129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5032986-5033048:1:exon

position:5032986:1
position: 5032986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5033048:1
position: 5033048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5033219-5035254:1:exon

position:5033219:1
position: 5033219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Maoa
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Maoa
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: amine oxidase [flavin-containing] A
translation: MTDLEKPNLAGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPSVWNLAYLDYNNPWRTMDEMGKRGQNIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQCGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKKDYCSCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIQPVGRFTFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPGLLKITGFSTSVALLCFVLYKIKQL
SIO_010081: Maoa
subclass of: SO_0000673
so part of: Maoa
location: join(4968406..4968478,4982427..4982521,4987471..4987608,5012981..5013092,5013794..5013885,5016999..5017140,5019306..5019455,5020212..5020371,5021159..5021255,5025548..5025601,5029161..5029218,5030485..5030582,5032019..5032129,5032986..5033048,5033219..5033356)
location: region:4968406-5033356:1
so has part: feature:4968406-4968478:1:exon
so has part: feature:4982427-4982521:1:exon
so has part: feature:4987471-4987608:1:exon
so has part: feature:5012981-5013092:1:exon
so has part: feature:5013794-5013885:1:exon
so has part: feature:5016999-5017140:1:exon
so has part: feature:5019306-5019455:1:exon
so has part: feature:5020212-5020371:1:exon
so has part: feature:5021159-5021255:1:exon
so has part: feature:5025548-5025601:1:exon
so has part: feature:5029161-5029218:1:exon
so has part: feature:5030485-5030582:1:exon
so has part: feature:5032019-5032129:1:exon
so has part: feature:5032986-5033048:1:exon
so has part: feature:5033219-5033356:1:exon

XP_032745555.1
type: Protein
SIO_000068: ncbiprotein

position:4968406:1
position: 4968406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5033356:1
position: 5033356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4968406-4968478:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4982427-4982521:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4987471-4987608:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5012981-5013092:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5013794-5013885:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5016999-5017140:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5019306-5019455:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5020212-5020371:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5021159-5021255:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5025548-5025601:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5029161-5029218:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5030485-5030582:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5032019-5032129:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5032986-5033048:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5033219-5033356:1:exon

Maob
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Maob
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5063120..5167820)
location: region:5063120-5167820:-1
so has part: feature:5063120-5167820:-1:exon
subclass of: SO_0000010

116889054
type: Gene
SIO_000068: ncbigene

position:5063120:-1
position: 5063120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5167820:-1
position: 5167820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5063120-5167820:-1:exon

Maob
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Maob
product: monoamine oxidase B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 12 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890243.1
SIO_010081: Maob
subclass of: SO_0000673
so part of: Maob
location: complement(join(5063120..5064044,5065088..5065150,5066099..5066210,5070903..5071000,5073141..5073198,5076334..5076387,5077848..5077944,5088101..5088260,5089222..5089371,5090493..5090634,5093547..5093638,5094642..5094745,5121605,5121799..5121936,5123231..5123325,5167659..5167820))
location: region:5063120-5167820:-1
so has part: feature:5167659-5167820:-1:exon
so has part: feature:5123231-5123325:-1:exon
so has part: feature:5121799-5121936:-1:exon
so has part: feature:5121605-5121605:-1:exon
so has part: feature:5094642-5094745:-1:exon
so has part: feature:5093547-5093638:-1:exon
so has part: feature:5090493-5090634:-1:exon
so has part: feature:5089222-5089371:-1:exon
so has part: feature:5088101-5088260:-1:exon
so has part: feature:5077848-5077944:-1:exon
so has part: feature:5076334-5076387:-1:exon
so has part: feature:5073141-5073198:-1:exon
so has part: feature:5070903-5071000:-1:exon
so has part: feature:5066099-5066210:-1:exon
so has part: feature:5065088-5065150:-1:exon
so has part: feature:5063120-5064044:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5167659-5167820:-1:exon

position:5167659:-1
position: 5167659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5123231-5123325:-1:exon

position:5123231:-1
position: 5123231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5123325:-1
position: 5123325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5121799-5121936:-1:exon

position:5121799:-1
position: 5121799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5121936:-1
position: 5121936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5121605-5121605:-1:exon

position:5121605:-1
position: 5121605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5094642-5094745:-1:exon

position:5094642:-1
position: 5094642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5094745:-1
position: 5094745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5093547-5093638:-1:exon

position:5093547:-1
position: 5093547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5093638:-1
position: 5093638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5090493-5090634:-1:exon

position:5090493:-1
position: 5090493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5090634:-1
position: 5090634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5089222-5089371:-1:exon

position:5089222:-1
position: 5089222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5089371:-1
position: 5089371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5088101-5088260:-1:exon

position:5088101:-1
position: 5088101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5088260:-1
position: 5088260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5077848-5077944:-1:exon

position:5077848:-1
position: 5077848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5077944:-1
position: 5077944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5076334-5076387:-1:exon

position:5076334:-1
position: 5076334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5076387:-1
position: 5076387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5073141-5073198:-1:exon

position:5073141:-1
position: 5073141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5073198:-1
position: 5073198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5070903-5071000:-1:exon

position:5070903:-1
position: 5070903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5071000:-1
position: 5071000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5066099-5066210:-1:exon

position:5066099:-1
position: 5066099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5066210:-1
position: 5066210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5065088-5065150:-1:exon

position:5065088:-1
position: 5065088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5065150:-1
position: 5065150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5063120-5064044:-1:exon

position:5064044:-1
position: 5064044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Maob
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Maob
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(5094645..5094647),aa:OTHER)
product: LOW QUALITY PROTEIN: amine oxidase [flavin-containing] B
translation: MSNKCDVIVVGGGISGMAAAKLLHDCGLSVVVLEARDRVGGRTYTIRNKNVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHFVKGKIIAFRGPIPPVWNPITYLDYNNLWRTMDEMGXEIPSDAPWKAPLAEEWDYMTVKELLDKICWTNSTKQIATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFIGGSGQVSERIKDILGDRVKLERPVIHIDQTGENVVVKTLNHEIYEAKYVISAIPPVLGMKIHHSPPLPILRNQLITRVPLGSVIKCMVYYKEPFWRKKDFCGTMVIEGEEAPIAYTLDDTKPDGSCAAIMGFILAHKARKLVRLTKEERLRKLCELYAKVLNSQEALQPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVGKIFFAGTETASHWSGYMEGAVEAGERAAREILHAIGKIPEDEIWQPEPESVDVPARPITNTFLERHLPSVPGLLKLLGLTTILSATALGFLAHKKGLFVRF
SIO_010081: Maob
subclass of: SO_0000673
so part of: Maob
location: complement(join(5063892..5064044,5065088..5065150,5066099..5066210,5070903..5071000,5073141..5073198,5076334..5076387,5077848..5077944,5088101..5088260,5089222..5089371,5090493..5090634,5093547..5093638,5094642..5094745,5121605,5121799..5121936,5123231..5123325,5167659..5167704))
location: region:5063892-5167704:-1
so has part: feature:5167659-5167704:-1:exon
so has part: feature:5123231-5123325:-1:exon
so has part: feature:5121799-5121936:-1:exon
so has part: feature:5121605-5121605:-1:exon
so has part: feature:5094642-5094745:-1:exon
so has part: feature:5093547-5093638:-1:exon
so has part: feature:5090493-5090634:-1:exon
so has part: feature:5089222-5089371:-1:exon
so has part: feature:5088101-5088260:-1:exon
so has part: feature:5077848-5077944:-1:exon
so has part: feature:5076334-5076387:-1:exon
so has part: feature:5073141-5073198:-1:exon
so has part: feature:5070903-5071000:-1:exon
so has part: feature:5066099-5066210:-1:exon
so has part: feature:5065088-5065150:-1:exon
so has part: feature:5063892-5064044:-1:exon

XP_032746134.1
type: Protein
SIO_000068: ncbiprotein

position:5063892:-1
position: 5063892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5167704:-1
position: 5167704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5167659-5167704:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5123231-5123325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5121799-5121936:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5121605-5121605:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5094642-5094745:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5093547-5093638:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5090493-5090634:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5089222-5089371:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5088101-5088260:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5077848-5077944:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5076334-5076387:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5073141-5073198:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5070903-5071000:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5066099-5066210:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5065088-5065150:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5063892-5064044:-1:exon

LOC116889213
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889213
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5219832..5221612)
location: region:5219832-5221612:-1
so has part: feature:5219832-5221612:-1:exon

116889213
type: Gene
SIO_000068: ncbigene

position:5219832:-1
position: 5219832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5221612:-1
position: 5221612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5219832-5221612:-1:exon

LOC116889213
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889213
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889213
subclass of: SO_0000673
so part of: LOC116889213
location: complement(5219832..5220533)
location: region:5219832-5220533:-1
so has part: feature:5219832-5220533:-1:exon

position:5220533:-1
position: 5220533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5219832-5220533:-1:exon

LOC116889213
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889213
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889213
subclass of: SO_0000673
so part of: LOC116889213
location: complement(5221199..5221612)
location: region:5221199-5221612:-1
so has part: feature:5221199-5221612:-1:exon

position:5221199:-1
position: 5221199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5221199-5221612:-1:exon

Ndp
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Ndp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5226608..5251034)
location: region:5226608-5251034:-1
so has part: feature:5226608-5251034:-1:exon
subclass of: SO_0000010

116889154
type: Gene
SIO_000068: ncbigene

position:5226608:-1
position: 5226608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5251034:-1
position: 5251034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5226608-5251034:-1:exon

Ndp
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Ndp
product: norrin cystine knot growth factor NDP
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_032890320.1
SIO_010081: Ndp
subclass of: SO_0000673
so part of: Ndp
location: complement(join(5226608..5227807,5235450..5235830,5250685..5251034))
location: region:5226608-5251034:-1
so has part: feature:5250685-5251034:-1:exon
so has part: feature:5235450-5235830:-1:exon
so has part: feature:5226608-5227807:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5250685-5251034:-1:exon

position:5250685:-1
position: 5250685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5235450-5235830:-1:exon

position:5235450:-1
position: 5235450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5235830:-1
position: 5235830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5226608-5227807:-1:exon

position:5227807:-1
position: 5227807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Ndp
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Ndp
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: norrin
translation: MRNHVLAASISMLSLLAIMGDTDSKTDSSFLMDSQRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECSS
SIO_010081: Ndp
subclass of: SO_0000673
so part of: Ndp
location: complement(join(5227580..5227807,5235450..5235617))
location: region:5227580-5235617:-1
so has part: feature:5235450-5235617:-1:exon
so has part: feature:5227580-5227807:-1:exon

XP_032746211.1
type: Protein
SIO_000068: ncbiprotein

position:5227580:-1
position: 5227580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5235617:-1
position: 5235617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5235450-5235617:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5227580-5227807:-1:exon

LOC116888697
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888697
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5301809..5302150)
location: region:5301809-5302150:-1
so has part: feature:5301809-5302150:-1:exon
subclass of: SO_0000010

116888697
type: Gene
SIO_000068: ncbigene

position:5301809:-1
position: 5301809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5302150:-1
position: 5302150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5301809-5302150:-1:exon

LOC116888697
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888697
product: cytochrome c oxidase subunit 7A2, mitochondrial-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889987.1
SIO_010081: LOC116888697
subclass of: SO_0000673
so part of: LOC116888697
location: complement(5301809..5302150)
location: region:5301809-5302150:-1
so has part: feature:5301809-5302150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5301809-5302150:-1:exon

LOC116888697
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888697
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome c oxidase subunit 7A2, mitochondrial-like
translation: MLRNVLALRQIVQRTISTTSQRHFENKVPEKQKLFQEDNWMPVHLKGGASDALLYRATMLLTVGGTAYAIYMLAMAAFPKKQN
SIO_010081: LOC116888697
subclass of: SO_0000673
so part of: LOC116888697
location: complement(5301843..5302094)
location: region:5301843-5302094:-1
so has part: feature:5301843-5302094:-1:exon

XP_032745878.1
type: Protein
SIO_000068: ncbiprotein

position:5301843:-1
position: 5301843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5302094:-1
position: 5302094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5301843-5302094:-1:exon

LOC116888261
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888261
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5627500..5628362)
location: region:5627500-5628362:-1
so has part: feature:5627500-5628362:-1:exon

116888261
type: Gene
SIO_000068: ncbigene

position:5627500:-1
position: 5627500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5628362:-1
position: 5628362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5627500-5628362:-1:exon

LOC116888261
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888261
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC116888261
subclass of: SO_0000673
so part of: LOC116888261
location: complement(5627500..5628362)
location: region:5627500-5628362:-1
so has part: feature:5627500-5628362:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5627500-5628362:-1:exon

LOC116888274
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888274
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5944691..5946774)
location: region:5944691-5946774:-1
so has part: feature:5944691-5946774:-1:exon
subclass of: SO_0000011

116888274
type: Gene
SIO_000068: ncbigene

position:5944691:-1
position: 5944691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5946774:-1
position: 5946774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5944691-5946774:-1:exon

LOC116888274
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888274
product: uncharacterized LOC116888274
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004386299.1
SIO_010081: LOC116888274
subclass of: SO_0000673
so part of: LOC116888274
location: complement(join(5944691..5945271,5945823..5946774))
location: region:5944691-5946774:-1
so has part: feature:5945823-5946774:-1:exon
so has part: feature:5944691-5945271:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5945823-5946774:-1:exon

position:5945823:-1
position: 5945823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5944691-5945271:-1:exon

position:5945271:-1
position: 5945271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888273
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888273
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5963893..6038124)
location: region:5963893-6038124:-1
so has part: feature:5963893-6038124:-1:exon
subclass of: SO_0000011

116888273
type: Gene
SIO_000068: ncbigene

position:5963893:-1
position: 5963893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6038124:-1
position: 6038124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5963893-6038124:-1:exon

LOC116888273
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888273
product: uncharacterized LOC116888273, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004386297.1
SIO_010081: LOC116888273
subclass of: SO_0000673
so part of: LOC116888273
location: complement(join(5963893..5964786,5967289..5967456,6033277..6033357,6035820..6035919,6037946..6038124))
location: region:5963893-6038124:-1
so has part: feature:6037946-6038124:-1:exon
so has part: feature:6035820-6035919:-1:exon
so has part: feature:6033277-6033357:-1:exon
so has part: feature:5967289-5967456:-1:exon
so has part: feature:5963893-5964786:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6037946-6038124:-1:exon

position:6037946:-1
position: 6037946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6035820-6035919:-1:exon

position:6035820:-1
position: 6035820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6035919:-1
position: 6035919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6033277-6033357:-1:exon

position:6033277:-1
position: 6033277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6033357:-1
position: 6033357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5967289-5967456:-1:exon

position:5967289:-1
position: 5967289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5967456:-1
position: 5967456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5963893-5964786:-1:exon

position:5964786:-1
position: 5964786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888273
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888273
product: uncharacterized LOC116888273, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004386298.1
SIO_010081: LOC116888273
subclass of: SO_0000673
so part of: LOC116888273
location: complement(join(5963893..5964786,5967289..5967456,6033277..6033357,6035086..6035919,6037946..6038124))
location: region:5963893-6038124:-1
so has part: feature:6037946-6038124:-1:exon
so has part: feature:6035086-6035919:-1:exon
so has part: feature:6033277-6033357:-1:exon
so has part: feature:5967289-5967456:-1:exon
so has part: feature:5963893-5964786:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6037946-6038124:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6035086-6035919:-1:exon

position:6035086:-1
position: 6035086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6033277-6033357:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5967289-5967456:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5963893-5964786:-1:exon

LOC116888273
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888273
product: uncharacterized LOC116888273, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004386296.1
SIO_010081: LOC116888273
subclass of: SO_0000673
so part of: LOC116888273
location: complement(join(6032850..6033357,6035820..6035919,6037946..6038124))
location: region:6032850-6038124:-1
so has part: feature:6037946-6038124:-1:exon
so has part: feature:6035820-6035919:-1:exon
so has part: feature:6032850-6033357:-1:exon

position:6032850:-1
position: 6032850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6037946-6038124:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6035820-6035919:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6032850-6033357:-1:exon

LOC116889167
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889167
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6053941..6054703
location: region:6053941-6054703:1
so has part: feature:6053941-6054703:1:exon

116889167
type: Gene
SIO_000068: ncbigene

position:6053941:1
position: 6053941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6054703:1
position: 6054703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6053941-6054703:1:exon

LOC116889167
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889167
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
pseudo: true
SIO_010081: LOC116889167
subclass of: SO_0000673
so part of: LOC116889167
location: 6053941..6054703
location: region:6053941-6054703:1
so has part: feature:6053941-6054703:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6053941-6054703:1:exon

Gpr143
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Gpr143
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6184977..6209991)
location: region:6184977-6209991:-1
so has part: feature:6184977-6209991:-1:exon
subclass of: SO_0000010

116888959
type: Gene
SIO_000068: ncbigene

position:6184977:-1
position: 6184977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6209991:-1
position: 6209991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6184977-6209991:-1:exon

Gpr143
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Gpr143
product: G protein-coupled receptor 143
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890187.1
SIO_010081: Gpr143
subclass of: SO_0000673
so part of: Gpr143
location: complement(join(6184977..6185405,6192841..6193078,6195747..6195841,6197884..6197993,6200648..6200740,6204185..6204279,6204794..6204901,6209422..6209568,6209985..6209991))
location: region:6184977-6209991:-1
so has part: feature:6209985-6209991:-1:exon
so has part: feature:6209422-6209568:-1:exon
so has part: feature:6204794-6204901:-1:exon
so has part: feature:6204185-6204279:-1:exon
so has part: feature:6200648-6200740:-1:exon
so has part: feature:6197884-6197993:-1:exon
so has part: feature:6195747-6195841:-1:exon
so has part: feature:6192841-6193078:-1:exon
so has part: feature:6184977-6185405:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6209985-6209991:-1:exon

position:6209985:-1
position: 6209985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6209422-6209568:-1:exon

position:6209422:-1
position: 6209422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6209568:-1
position: 6209568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6204794-6204901:-1:exon

position:6204794:-1
position: 6204794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6204901:-1
position: 6204901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6204185-6204279:-1:exon

position:6204185:-1
position: 6204185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6204279:-1
position: 6204279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6200648-6200740:-1:exon

position:6200648:-1
position: 6200648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6200740:-1
position: 6200740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6197884-6197993:-1:exon

position:6197884:-1
position: 6197884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6197993:-1
position: 6197993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6195747-6195841:-1:exon

position:6195747:-1
position: 6195747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6195841:-1
position: 6195841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6192841-6193078:-1:exon

position:6192841:-1
position: 6192841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6193078:-1
position: 6193078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6184977-6185405:-1:exon

position:6185405:-1
position: 6185405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Gpr143
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Gpr143
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: G-protein coupled receptor 143
translation: MAEVCLRLASHWPFRFLTGRRSVGHRAPATTPAASVHILRAATACDLLGCLGIVIRSTXVIAYPEFIENISNMNGTDIWPTAFCVGSAMWIQLLYSACFWWLFCYAVDVYLVIRRSAGRSTILLYHIMAWGLPVLLCVEGAVMLYYPSVSRCERGLDHAIPHYVTTYLPLMLVLVANPILFHKTVISVASLLKGRKGVYTENERLMGAVIKTRFFKIMLGILNPSQGLLLSLAFYGWTGCSLDVHPPKMVIQWETMTASAAEGTYQTPEGSCVPHQNPRKVVCVGGHTSDEVLSILSEGSDASTVEIHTATGSHNIKEVDSISQAQGDL
SIO_010081: Gpr143
subclass of: SO_0000673
so part of: Gpr143
location: complement(join(6185311..6185405,6192841..6193078,6195747..6195841,6197884..6197993,6200648..6200740,6204185..6204279,6204794..6204901,6209422..6209568,6209985..6209991))
location: region:6185311-6209991:-1
so has part: feature:6209985-6209991:-1:exon
so has part: feature:6209422-6209568:-1:exon
so has part: feature:6204794-6204901:-1:exon
so has part: feature:6204185-6204279:-1:exon
so has part: feature:6200648-6200740:-1:exon
so has part: feature:6197884-6197993:-1:exon
so has part: feature:6195747-6195841:-1:exon
so has part: feature:6192841-6193078:-1:exon
so has part: feature:6185311-6185405:-1:exon

XP_032746078.1
type: Protein
SIO_000068: ncbiprotein

position:6185311:-1
position: 6185311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6209985-6209991:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209422-6209568:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6204794-6204901:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6204185-6204279:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6200648-6200740:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6197884-6197993:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6195747-6195841:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6192841-6193078:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6185311-6185405:-1:exon

Shroom2
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Shroom2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6228154..6386193
location: region:6228154-6386193:1
so has part: feature:6228154-6386193:1:exon
subclass of: SO_0000010

116888425
type: Gene
SIO_000068: ncbigene

position:6228154:1
position: 6228154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6386193:1
position: 6386193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6228154-6386193:1:exon

Shroom2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Shroom2
product: shroom family member 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_032889695.1
SIO_010081: Shroom2
subclass of: SO_0000673
so part of: Shroom2
location: join(6228154..6228550,6302424..6302575,6329631..6329762,6340798..6343264,6345225..6345325,6372113..6372322,6374964..6375509,6377080..6377240,6381646..6381918,6383415..6386193)
location: region:6228154-6386193:1
so has part: feature:6228154-6228550:1:exon
so has part: feature:6302424-6302575:1:exon
so has part: feature:6329631-6329762:1:exon
so has part: feature:6340798-6343264:1:exon
so has part: feature:6345225-6345325:1:exon
so has part: feature:6372113-6372322:1:exon
so has part: feature:6374964-6375509:1:exon
so has part: feature:6377080-6377240:1:exon
so has part: feature:6381646-6381918:1:exon
so has part: feature:6383415-6386193:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6228154-6228550:1:exon

position:6228550:1
position: 6228550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6302424-6302575:1:exon

position:6302424:1
position: 6302424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6302575:1
position: 6302575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6329631-6329762:1:exon

position:6329631:1
position: 6329631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6329762:1
position: 6329762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6340798-6343264:1:exon

position:6340798:1
position: 6340798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6343264:1
position: 6343264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6345225-6345325:1:exon

position:6345225:1
position: 6345225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6345325:1
position: 6345325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6372113-6372322:1:exon

position:6372113:1
position: 6372113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6372322:1
position: 6372322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6374964-6375509:1:exon

position:6374964:1
position: 6374964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6375509:1
position: 6375509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6377080-6377240:1:exon

position:6377080:1
position: 6377080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6377240:1
position: 6377240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6381646-6381918:1:exon

position:6381646:1
position: 6381646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6381918:1
position: 6381918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6383415-6386193:1:exon

position:6383415:1
position: 6383415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Shroom2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Shroom2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein Shroom2
translation: MEGAEPRARPERLAEAEARATDGVRLVEVQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAADKLLAGDEIVAINDVTLSGFRQEAICLVKGSHKTLKLVVKRKSDPSWRPHSWHATKYFDVHPEPAVSVFLNSSNSPSWKSQHQASSSSHDLSGSWEHTSLQRTSDHFSSMGSIDSLDHSSQLYPSGHLSSAKSNSSIDHLGGHSKRDSAYGSFSTCSSTPDHTLPKADASSTENILYKVGLWEASRPGSSRQSQSTGDPQGLQDRPSSFLPRVPGNSSKSPRPEDNIEPKIATSGRSNFGPVWYVPDKKKAPSPPPLGLPLRSDSFAVAARGHEKARGPPFSDLASMQHFTTLPHVQPRGDRRMETTDRQWKLAHPSSGKEIGNVGYQPEGHLDCRWLCSDDRVGRASAAPGRHQFSLSSTDVHFLKSYHGSQHPQPCSDESPRFPSSSRELLRITPSGCLQEPPELSQDDNPAQVRWPGSVNQKLDDRGRSHYFSVPLRQPVHGSAHVVIPRSDYWHSDTTPVDLEYPLLRPDQRGYPQQYEETPASHERGGYQQLNAGIEGCCSGIHEPPRASHTVRAGLQCPGNDFKLVDAESGRISRQRTPMLHSLTQDGAWRPGNSKDCGNEKPPLLDAQVGKPTRRSDRFATTLRNEIQMRRAKLQKSKSTVTLAGDSEAEDCAGDWRADVGAVPEGSFPSTYKEHLKEAQTRVLKATSFQRRDLDPTPADQYPGPPEHKTCDHSASSSLSSFPGEPDSAPRLCEAGLAKPPSSAGGVPHILRIGGRKRFTAEQKLKSYSEPEKINEVGLSGDHSPHPTIRTSEDTVGTFADRWKFFEETSKSLLQKPGHRQAFCGIPREKAERPQTQGHECESTEPWFQKRSRATSCGEILSEDRKVEKASEKLNPPRRLGTFAEYQASWKEQKKSLEARSSGRYHSADDILDAGLDQQQRPQYIHERSRSSPSTDHYSQEVPVEPNRQAEDSGGQKEALLCTLQAEEGCSAPSSSVLSSAQPQDSQHVNEDPTSPQPEAQLSSKCQHLQTSTMETSRSPSPQFAPQKLTDKPPLLIHEDNSARIERVMDNNTTVKMVPIKIVHSESQPEKESRQSLACPAELPALPSGLEKDQIKTLSTSEQCYSRFCVYTRQEVEAPHRARPPEPQPPSTPAPPVRDSCSSPPSLNYGKVKEKTVDDLKSEELAREIVGKDKSLADILDPSMKIKTTMDLMEGIFPKDEYLLEEAQQRRKLLPKVPSPRVTEYKKQDPGMPGVVSLATNSTYYSTSAPKAELLIKMKDLQEPEXYSAGDLDHDLSIKKQELIDSISRKLQVLREARESLLEDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLDDSPSPGDRQSLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATYLSEENLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPERSK
SIO_010081: Shroom2
subclass of: SO_0000673
so part of: Shroom2
location: join(6228386..6228550,6302424..6302575,6329631..6329762,6340798..6343264,6345225..6345325,6372113..6372322,6374964..6375509,6377080..6377240,6381646..6381918,6383415..6383682)
location: region:6228386-6383682:1
so has part: feature:6228386-6228550:1:exon
so has part: feature:6302424-6302575:1:exon
so has part: feature:6329631-6329762:1:exon
so has part: feature:6340798-6343264:1:exon
so has part: feature:6345225-6345325:1:exon
so has part: feature:6372113-6372322:1:exon
so has part: feature:6374964-6375509:1:exon
so has part: feature:6377080-6377240:1:exon
so has part: feature:6381646-6381918:1:exon
so has part: feature:6383415-6383682:1:exon

XP_032745586.1
type: Protein
SIO_000068: ncbiprotein

position:6228386:1
position: 6228386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6383682:1
position: 6383682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6228386-6228550:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6302424-6302575:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6329631-6329762:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6340798-6343264:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6345225-6345325:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6372113-6372322:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6374964-6375509:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6377080-6377240:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6381646-6381918:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6383415-6383682:1:exon

LOC116888824
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888824
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6395438..6398950
location: region:6395438-6398950:1
so has part: feature:6395438-6398950:1:exon

116888824
type: Gene
SIO_000068: ncbigene

position:6395438:1
position: 6395438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6398950:1
position: 6398950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6395438-6398950:1:exon

LOC116888824
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888824
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC116888824
subclass of: SO_0000673
so part of: LOC116888824
location: 6395438..6396176
location: region:6395438-6396176:1
so has part: feature:6395438-6396176:1:exon

position:6396176:1
position: 6396176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6395438-6396176:1:exon

LOC116888824
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888824
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC116888824
subclass of: SO_0000673
so part of: LOC116888824
location: 6398166..6398950
location: region:6398166-6398950:1
so has part: feature:6398166-6398950:1:exon

position:6398166:1
position: 6398166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6398166-6398950:1:exon

LOC116889267
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889267
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6438125..6438499
location: region:6438125-6438499:1
so has part: feature:6438125-6438499:1:exon

116889267
type: Gene
SIO_000068: ncbigene

position:6438125:1
position: 6438125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6438499:1
position: 6438499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6438125-6438499:1:exon

LOC116889267
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889267
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC116889267
subclass of: SO_0000673
so part of: LOC116889267
location: 6438125..6438499
location: region:6438125-6438499:1
so has part: feature:6438125-6438499:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6438125-6438499:1:exon

LOC116888960
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888960
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6441799..6542767
location: region:6441799-6542767:1
so has part: feature:6441799-6542767:1:exon
subclass of: SO_0000010

116888960
type: Gene
SIO_000068: ncbigene

position:6441799:1
position: 6441799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6542767:1
position: 6542767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6441799-6542767:1:exon

LOC116888960
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888960
product: serine/threonine-protein kinase WNK3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890188.1
SIO_010081: LOC116888960
subclass of: SO_0000673
so part of: LOC116888960
location: join(6441799..6442007,6476531..6477182,6488120..6488292,6489875..6490095,6491483..6491640,6509175..6509263,6512430..6512649,6514744..6515038,6516738..6516838,6517087..6517266,6533490..6533557,6537318..6537465,6539027..6539143,6542440..6542595,6542677..6542767)
location: region:6441799-6542767:1
so has part: feature:6441799-6442007:1:exon
so has part: feature:6476531-6477182:1:exon
so has part: feature:6488120-6488292:1:exon
so has part: feature:6489875-6490095:1:exon
so has part: feature:6491483-6491640:1:exon
so has part: feature:6509175-6509263:1:exon
so has part: feature:6512430-6512649:1:exon
so has part: feature:6514744-6515038:1:exon
so has part: feature:6516738-6516838:1:exon
so has part: feature:6517087-6517266:1:exon
so has part: feature:6533490-6533557:1:exon
so has part: feature:6537318-6537465:1:exon
so has part: feature:6539027-6539143:1:exon
so has part: feature:6542440-6542595:1:exon
so has part: feature:6542677-6542767:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6441799-6442007:1:exon

position:6442007:1
position: 6442007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6476531-6477182:1:exon

position:6476531:1
position: 6476531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6477182:1
position: 6477182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6488120-6488292:1:exon

position:6488120:1
position: 6488120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6488292:1
position: 6488292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6489875-6490095:1:exon

position:6489875:1
position: 6489875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6490095:1
position: 6490095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6491483-6491640:1:exon

position:6491483:1
position: 6491483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6491640:1
position: 6491640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6509175-6509263:1:exon

position:6509175:1
position: 6509175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6509263:1
position: 6509263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6512430-6512649:1:exon

position:6512430:1
position: 6512430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6512649:1
position: 6512649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6514744-6515038:1:exon

position:6514744:1
position: 6514744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6515038:1
position: 6515038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6516738-6516838:1:exon

position:6516738:1
position: 6516738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6516838:1
position: 6516838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6517087-6517266:1:exon

position:6517087:1
position: 6517087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6517266:1
position: 6517266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6533490-6533557:1:exon

position:6533490:1
position: 6533490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6533557:1
position: 6533557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6537318-6537465:1:exon

position:6537318:1
position: 6537318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6537465:1
position: 6537465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6539027-6539143:1:exon

position:6539027:1
position: 6539027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6539143:1
position: 6539143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6542440-6542595:1:exon

position:6542440:1
position: 6542440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6542595:1
position: 6542595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6542677-6542767:1:exon

position:6542677:1
position: 6542677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888960
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase WNK3
translation: MATDSGEPASTEDSEKPDGVSFENRVARAVAPLTVEARIKEKYSTFSASGETIERKRFFRKSVEMTEDDKVAQSSRRDERKVATNISRVEKVPTNVLRGGQEVKYEQCSKATSESSKDCFKEKTEKEMEEEAEMKAVATSPSGRFLKFDIELGRGAFKTVYKGLDTETWVEVAWCELQDRKLTKAEQQRFKEEAEMLKGLQHPNIVRFYDSWESILKGKKCIVLVTELMTSGTLKTYLKRFKVMKPKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLMRTSFAKSVIGTPEFMAPEMYEEHYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSERLSIKDLLNHAFFAEDTGLRVELAEEDDCSNSSLALRLWVEDPKKLKGKHKDNEAIEFSFNLEADTPEEVAYEMVKSGFFHESDSKAVAKSIRDRVTLIKKIREKKPAGCLEERRDSQCKRVRNVNPQQQTATLRPAPGPHNAAECEETEVDQHVRQQFVQGKAQQQPSSVRGDTSSEPAAGPGVHSDTSSRPTVAYSSNQATSSQEQPKLTRSPVLPVVQGQSSVMPIYAAGPAVASQSQISPLTIQKVSQIKVRHISCLFVCLFPCIPNPIDLNNETTPQKSRFCSSLNQDVTSVKENTNSPDTPSGNGKQDRIKQRRASCPRPEKGTKFQLTVLQVSVSGDNMVECQLETHNNKMVTFKFDVDGDAPEDIANYMVEDNFVLENEKEKFVEELRAIVGQAQEILHVHSAAEKSIGVDSVALESNSNQTGSSEQVLINSASTQTSSKYT
SIO_010081: LOC116888960
subclass of: SO_0000673
so part of: LOC116888960
location: join(6476649..6477182,6488120..6488292,6489875..6490095,6491483..6491640,6509175..6509263,6512430..6512649,6514744..6515038,6516738..6516838,6517087..6517266,6533490..6533557,6537318..6537465,6539027..6539143,6542440..6542595,6542677..6542742)
location: region:6476649-6542742:1
so has part: feature:6476649-6477182:1:exon
so has part: feature:6488120-6488292:1:exon
so has part: feature:6489875-6490095:1:exon
so has part: feature:6491483-6491640:1:exon
so has part: feature:6509175-6509263:1:exon
so has part: feature:6512430-6512649:1:exon
so has part: feature:6514744-6515038:1:exon
so has part: feature:6516738-6516838:1:exon
so has part: feature:6517087-6517266:1:exon
so has part: feature:6533490-6533557:1:exon
so has part: feature:6537318-6537465:1:exon
so has part: feature:6539027-6539143:1:exon
so has part: feature:6542440-6542595:1:exon
so has part: feature:6542677-6542742:1:exon

XP_032746079.1
type: Protein
SIO_000068: ncbiprotein

position:6476649:1
position: 6476649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6542742:1
position: 6542742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6476649-6477182:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6488120-6488292:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6489875-6490095:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6491483-6491640:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6509175-6509263:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6512430-6512649:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6514744-6515038:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6516738-6516838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6517087-6517266:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6533490-6533557:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6537318-6537465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6539027-6539143:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6542440-6542595:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6542677-6542742:1:exon

Spink13
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Spink13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6562169..6567821
location: region:6562169-6567821:1
so has part: feature:6562169-6567821:1:exon
subclass of: SO_0000010

116888235
type: Gene
SIO_000068: ncbigene

position:6562169:1
position: 6562169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6567821:1
position: 6567821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6562169-6567821:1:exon

Spink13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Spink13
product: serine peptidase inhibitor Kazal type 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins
transcript id: XM_032889526.1
SIO_010081: Spink13
subclass of: SO_0000673
so part of: Spink13
location: join(6562169..6562260,6566532..6566569,6567208..6567335,6567585..6567821)
location: region:6562169-6567821:1
so has part: feature:6562169-6562260:1:exon
so has part: feature:6566532-6566569:1:exon
so has part: feature:6567208-6567335:1:exon
so has part: feature:6567585-6567821:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6562169-6562260:1:exon

position:6562260:1
position: 6562260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6566532-6566569:1:exon

position:6566532:1
position: 6566532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6566569:1
position: 6566569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6567208-6567335:1:exon

position:6567208:1
position: 6567208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6567335:1
position: 6567335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6567585-6567821:1:exon

position:6567585:1
position: 6567585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Spink13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Spink13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine protease inhibitor Kazal-type 13
translation: MTRRGCWPHRIIFSLVLLTWTHVTLAALIRSHTFSNWPKPPCKMYYPIDPDYEANCPDVIALVCATNGLNYKNECFFCIDRWEFGPHIEFVKYGKCE
SIO_010081: Spink13
subclass of: SO_0000673
so part of: Spink13
location: join(6562182..6562260,6566532..6566569,6567208..6567335,6567585..6567633)
location: region:6562182-6567633:1
so has part: feature:6562182-6562260:1:exon
so has part: feature:6566532-6566569:1:exon
so has part: feature:6567208-6567335:1:exon
so has part: feature:6567585-6567633:1:exon

XP_032745417.1
type: Protein
SIO_000068: ncbiprotein

position:6562182:1
position: 6562182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6567633:1
position: 6567633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6562182-6562260:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6566532-6566569:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6567208-6567335:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6567585-6567633:1:exon

LOC116888236
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888236
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6582913..6586379
location: region:6582913-6586379:1
so has part: feature:6582913-6586379:1:exon
subclass of: SO_0000010

116888236
type: Gene
SIO_000068: ncbigene

position:6582913:1
position: 6582913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6586379:1
position: 6586379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6582913-6586379:1:exon

LOC116888236
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888236
product: serine protease inhibitor Kazal-type 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins
transcript id: XM_032889527.1
SIO_010081: LOC116888236
subclass of: SO_0000673
so part of: LOC116888236
location: join(6582913..6582976,6583849..6583874,6584770..6584894,6586334..6586379)
location: region:6582913-6586379:1
so has part: feature:6582913-6582976:1:exon
so has part: feature:6583849-6583874:1:exon
so has part: feature:6584770-6584894:1:exon
so has part: feature:6586334-6586379:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6582913-6582976:1:exon

position:6582976:1
position: 6582976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6583849-6583874:1:exon

position:6583849:1
position: 6583849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6583874:1
position: 6583874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6584770-6584894:1:exon

position:6584770:1
position: 6584770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6584894:1
position: 6584894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6586334-6586379:1:exon

position:6586334:1
position: 6586334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888236
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888236
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine protease inhibitor Kazal-type 7
translation: MKLLGGLLLLFTATCLCNSFSEVTSHPSPTVDCDIYKKYPVVAIPCPIENIPVCGSDYITYGNKCKLCTEILRSNGKIQFLHEGHC
SIO_010081: LOC116888236
subclass of: SO_0000673
so part of: LOC116888236
location: join(6582913..6582976,6583849..6583874,6584770..6584894,6586334..6586379)
location: region:6582913-6586379:1
so has part: feature:6582913-6582976:1:exon
so has part: feature:6583849-6583874:1:exon
so has part: feature:6584770-6584894:1:exon
so has part: feature:6586334-6586379:1:exon

XP_032745418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6582913-6582976:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6583849-6583874:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6584770-6584894:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6586334-6586379:1:exon

Fbxo38
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Fbxo38
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6624264..6671057
location: region:6624264-6671057:1
so has part: feature:6624264-6671057:1:exon
subclass of: SO_0000010

116888237
type: Gene
SIO_000068: ncbigene

position:6624264:1
position: 6624264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6671057:1
position: 6671057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6624264-6671057:1:exon

Fbxo38
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Fbxo38
product: F-box protein 38
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 ESTs, 3 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889528.1
SIO_010081: Fbxo38
subclass of: SO_0000673
so part of: Fbxo38
location: join(6624264..6624373,6632514..6632699,6637261..6637394,6639267..6639430,6639638..6639803,6642560..6642697,6643705..6643842,6646179..6646272,6647414..6647544,6651405..6651575,6653131..6653273,6654095..6654308,6656254..6656370,6657484..6657663,6659109..6659849,6663748..6663848,6664050..6664152,6666962..6667128,6668151..6668296,6668833..6668934,6669276..6669389,6670244..6671057)
location: region:6624264-6671057:1
so has part: feature:6624264-6624373:1:exon
so has part: feature:6632514-6632699:1:exon
so has part: feature:6637261-6637394:1:exon
so has part: feature:6639267-6639430:1:exon
so has part: feature:6639638-6639803:1:exon
so has part: feature:6642560-6642697:1:exon
so has part: feature:6643705-6643842:1:exon
so has part: feature:6646179-6646272:1:exon
so has part: feature:6647414-6647544:1:exon
so has part: feature:6651405-6651575:1:exon
so has part: feature:6653131-6653273:1:exon
so has part: feature:6654095-6654308:1:exon
so has part: feature:6656254-6656370:1:exon
so has part: feature:6657484-6657663:1:exon
so has part: feature:6659109-6659849:1:exon
so has part: feature:6663748-6663848:1:exon
so has part: feature:6664050-6664152:1:exon
so has part: feature:6666962-6667128:1:exon
so has part: feature:6668151-6668296:1:exon
so has part: feature:6668833-6668934:1:exon
so has part: feature:6669276-6669389:1:exon
so has part: feature:6670244-6671057:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6624264-6624373:1:exon

position:6624373:1
position: 6624373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6632514-6632699:1:exon

position:6632514:1
position: 6632514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6632699:1
position: 6632699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6637261-6637394:1:exon

position:6637261:1
position: 6637261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6637394:1
position: 6637394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6639267-6639430:1:exon

position:6639267:1
position: 6639267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6639430:1
position: 6639430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6639638-6639803:1:exon

position:6639638:1
position: 6639638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6639803:1
position: 6639803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6642560-6642697:1:exon

position:6642560:1
position: 6642560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6642697:1
position: 6642697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6643705-6643842:1:exon

position:6643705:1
position: 6643705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6643842:1
position: 6643842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6646179-6646272:1:exon

position:6646179:1
position: 6646179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6646272:1
position: 6646272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6647414-6647544:1:exon

position:6647414:1
position: 6647414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6647544:1
position: 6647544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6651405-6651575:1:exon

position:6651405:1
position: 6651405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6651575:1
position: 6651575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6653131-6653273:1:exon

position:6653131:1
position: 6653131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6653273:1
position: 6653273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6654095-6654308:1:exon

position:6654095:1
position: 6654095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6654308:1
position: 6654308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6656254-6656370:1:exon

position:6656254:1
position: 6656254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6656370:1
position: 6656370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6657484-6657663:1:exon

position:6657484:1
position: 6657484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6657663:1
position: 6657663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6659109-6659849:1:exon

position:6659109:1
position: 6659109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6659849:1
position: 6659849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6663748-6663848:1:exon

position:6663748:1
position: 6663748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6663848:1
position: 6663848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6664050-6664152:1:exon

position:6664050:1
position: 6664050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6664152:1
position: 6664152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6666962-6667128:1:exon

position:6666962:1
position: 6666962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6667128:1
position: 6667128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6668151-6668296:1:exon

position:6668151:1
position: 6668151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6668296:1
position: 6668296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6668833-6668934:1:exon

position:6668833:1
position: 6668833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6668934:1
position: 6668934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6669276-6669389:1:exon

position:6669276:1
position: 6669276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6669389:1
position: 6669389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:6670244-6671057:1:exon

position:6670244:1
position: 6670244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Fbxo38
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Fbxo38
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: F-box only protein 38
translation: MGPRKKSVKVCVMDSEVPEETTADEEKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRKLKEAVTLYLRVVRVVDLCAGRWWEYMPSGFTDCSFLTLLKKMPDVEQLYGLHPRYLERRRVRGHEAFSIPGVLEALQACPNLVGVETSHLELVESIWTYMPHVHILGKFRNRNGAFPIPPENKLKIPIGAKIQTLHLVGVNVPEIPCIPMLRHLYMKWVRLTKPQPFKDFLCISLRTFVMRNCAGPTNSLKYVPLVTGLASARNLEHLEMVRVPFLGGLIQHVVEDSWRSGGFRNLHTIVLGACKNALEVDLGYLIITAARRLHEVRIQPSLTKDGVFSALKMAELEFPQFETLHLGYVDEFLLQSRMANADLVKYGLADVVENPGIITDIGMKAVNEVFSCIKYLAIYNCPHLHNPYNWISDHSRWTRLVDINLVRCHALKLDSFGQFVELLPSLEFISLDQMFREPPKGCARVGLSAGTGIGVSSALVSNQNSNNDNDNNAQNNNANIHDNNHHHPDDSDDDNDFRQDLQQGEAQFAADALNDMEDMVQDDGEVVAESGSGVPAHQGVLPVDADEEQAGPSGLQRVVKPTPIAVHDSESDDEEDSLELQEVWIPKNGARRYSEREEKTGDSGQPRETAAVSGKGKTPLRKRYNNSHQMGQAKQFPLEESSCEKGCQVTSEQIKADMKAARDVSEKKKTKDVYPSCSSTAASTVGNSSSPSTASQSPDFVRTVTSGGSSEPSPPEVDVSRQCVCSPGGSEDSEAMEEGDAESSVCPRCCCLRPQESQRRTSRCSDEERPSTSRACVVNGADGTRSAFSFRTLPQGGSSGPAHDERTNGSGCGATGEDRRGSAQPESCDVQSNEDYPRRPLTRARSRLSHVPLIPESEIAKTKPCHAMKRKRTADKSTSTSDPVIEDDHVQVLVLKSKNLVGVTMTNCGITDLVLKDCPKMMFIHATRCRVLKHLKVENAPIVNRFDYAQCKKLNMDQVLDQILRMPPERNRIIYLRPMQQVDTLTLEQKLFSGPYPYHICVIHEFSNPPNVRNKVRIRNWMDTIANINQELIKYEFFLEATRTEEDXKKYPKYPWGXEIYTLEGVVDGAPYSMISDFPWLRSLRAAEPNSFARYDFEDDEESTIYAPRRKGQLSADICMETIGEEISEMRQMKRGVFQRVVAIFIHYCDVNGEPVEDDYI
SIO_010081: Fbxo38
subclass of: SO_0000673
so part of: Fbxo38
location: join(6632572..6632699,6637261..6637394,6639267..6639430,6639638..6639803,6642560..6642697,6643705..6643842,6646179..6646272,6647414..6647544,6651405..6651575,6653131..6653273,6654095..6654308,6656254..6656370,6657484..6657663,6659109..6659849,6663748..6663848,6664050..6664152,6666962..6667128,6668151..6668296,6668833..6668934,6669276..6669389,6670244..6670422)
location: region:6632572-6670422:1
so has part: feature:6632572-6632699:1:exon
so has part: feature:6637261-6637394:1:exon
so has part: feature:6639267-6639430:1:exon
so has part: feature:6639638-6639803:1:exon
so has part: feature:6642560-6642697:1:exon
so has part: feature:6643705-6643842:1:exon
so has part: feature:6646179-6646272:1:exon
so has part: feature:6647414-6647544:1:exon
so has part: feature:6651405-6651575:1:exon
so has part: feature:6653131-6653273:1:exon
so has part: feature:6654095-6654308:1:exon
so has part: feature:6656254-6656370:1:exon
so has part: feature:6657484-6657663:1:exon
so has part: feature:6659109-6659849:1:exon
so has part: feature:6663748-6663848:1:exon
so has part: feature:6664050-6664152:1:exon
so has part: feature:6666962-6667128:1:exon
so has part: feature:6668151-6668296:1:exon
so has part: feature:6668833-6668934:1:exon
so has part: feature:6669276-6669389:1:exon
so has part: feature:6670244-6670422:1:exon

XP_032745419.1
type: Protein
SIO_000068: ncbiprotein

position:6632572:1
position: 6632572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6670422:1
position: 6670422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6632572-6632699:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6637261-6637394:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6639267-6639430:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6639638-6639803:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6642560-6642697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6643705-6643842:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6646179-6646272:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6647414-6647544:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6651405-6651575:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6653131-6653273:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6654095-6654308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6656254-6656370:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6657484-6657663:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6659109-6659849:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6663748-6663848:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6664050-6664152:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6666962-6667128:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6668151-6668296:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6668833-6668934:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6669276-6669389:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6670244-6670422:1:exon

LOC116888365
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888365
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6808961..6811703
location: region:6808961-6811703:1
so has part: feature:6808961-6811703:1:exon
subclass of: SO_0000010

116888365
type: Gene
SIO_000068: ncbigene

position:6808961:1
position: 6808961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6811703:1
position: 6811703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6808961-6811703:1:exon

LOC116888365
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888365
product: wiskott-Aldrich syndrome protein family member 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins
transcript id: XM_032889632.1
SIO_010081: LOC116888365
subclass of: SO_0000673
so part of: LOC116888365
location: join(6808961..6809040,6809566..6811703)
location: region:6808961-6811703:1
so has part: feature:6808961-6809040:1:exon
so has part: feature:6809566-6811703:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6808961-6809040:1:exon

position:6809040:1
position: 6809040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6809566-6811703:1:exon

position:6809566:1
position: 6809566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888365
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: wiskott-Aldrich syndrome protein family member 1-like
translation: MAFNEDILRNILKESGTINEIKNEFMYIVLTSLSKIVRQVNDLDKFTEDVLGKLDKEIHDLSFKLKLLQENVIQLTNAIHKIPNDILSMQLWKSRKTFSKITIETQQVYSCTSVPIKIFERNNSNIRVPLLTVPEYYQNDMEDSPSSNGLFHPCVCCSKLFKDNVSVNKRLASEKEHTQNQNHTHAGDFKNVLQCHLLKKHIPVDHIPASGSEVSHSYLDQYGGGSSFYIFPPNRNKRQGTSAANILPREQEQLHYHIGCMSNSRPRVLYGTGKGDVVVKQRRVLTHSKSNVFVNPLAPKAPPLPSDWLIHLISSKKPSAPGVISSRGTSSFFVLGRTKTLPSACLKSNPNIDPTMPPEVEITATSESLERYELKPGGLNPQDMDQKIPLLLYPSVIPLRNQSWDSVVTLIDSLVEKPQPIKSSFPKSPRSLSKSKYAHGSLPQHPVANTSRTFSAQLPKSYRVPCHSFSVSASPSPKPQTSSNLVPKRSVSHLTKLIEAQSRSPVTYPKRHLHPPQAKPSKQLNKSNLTKVSTLQSSLSSIKSSASNHRALAKRHYRIESAYASILQNTSILPIMTKARKALMEAIRKGIKLRKTRPRAESDDPENEAKMIRFRRKAMGYHSGKSDSETEWVE
SIO_010081: LOC116888365
subclass of: SO_0000673
so part of: LOC116888365
location: 6809775..6811679
location: region:6809775-6811679:1
so has part: feature:6809775-6811679:1:exon

XP_032745523.1
type: Protein
SIO_000068: ncbiprotein

position:6809775:1
position: 6809775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6811679:1
position: 6811679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6809775-6811679:1:exon

Tent5d
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Tent5d
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6871959..6873440)
location: region:6871959-6873440:-1
so has part: feature:6871959-6873440:-1:exon
subclass of: SO_0000010

116889266
type: Gene
SIO_000068: ncbigene

position:6871959:-1
position: 6871959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6873440:-1
position: 6873440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6871959-6873440:-1:exon

Tent5d
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Tent5d
product: terminal nucleotidyltransferase 5D
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 17 Proteins
transcript id: XM_032890409.1
SIO_010081: Tent5d
subclass of: SO_0000673
so part of: Tent5d
location: complement(6871959..6873440)
location: region:6871959-6873440:-1
so has part: feature:6871959-6873440:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6871959-6873440:-1:exon

Tent5d
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Tent5d
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: terminal nucleotidyltransferase 5D
translation: MSEIRFSNLTWDHIVTLDRVLDEVIPIHGRGNFPTLEVKPKDIVHVVKDQLIKQGIIVKDTRLNGSTASYILASHNGISYKDLDIIFGVDLPSDQEFHVVKDAVLGCLLDFLPKGVKKEKITLKTMKEAYVQKMVKICSNNDRWSLISLSNNTGKNVELKFVNSLRRQFEFSVDSFQILLDSMLDFYSVPNAKLTKESCPVVVAESMYGDFQEAMVHLKYKLISTRKPEEIRGGGLLKYSNLLVRDFKPACQTEIKTLERYMCSRFFIDFPDVAEQQKKIESYLRNHFIGEEKSKYEYLMTLHGVVNQSTVCLMGYERRQTLNMITLLALKVLGEQNILPSTDNVTCFYQPAPYLVLEGGYPSYYVASGPPLVYFQPCHTVQFPVQNGMM
SIO_010081: Tent5d
subclass of: SO_0000673
so part of: Tent5d
location: complement(6872268..6873440)
location: region:6872268-6873440:-1
so has part: feature:6872268-6873440:-1:exon

XP_032746300.1
type: Protein
SIO_000068: ncbiprotein

position:6872268:-1
position: 6872268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6872268-6873440:-1:exon

LOC116888964
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888964
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7067030..7067518)
location: region:7067030-7067518:-1
so has part: feature:7067030-7067518:-1:exon

116888964
type: Gene
SIO_000068: ncbigene

position:7067030:-1
position: 7067030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7067518:-1
position: 7067518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7067030-7067518:-1:exon

LOC116888964
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888964
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888964
subclass of: SO_0000673
so part of: LOC116888964
location: complement(7067030..7067518)
location: region:7067030-7067518:-1
so has part: feature:7067030-7067518:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7067030-7067518:-1:exon

LOC116888965
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888965
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7351991..7353249
location: region:7351991-7353249:1
so has part: feature:7351991-7353249:1:exon

116888965
type: Gene
SIO_000068: ncbigene

position:7351991:1
position: 7351991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7353249:1
position: 7353249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7351991-7353249:1:exon

LOC116888965
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888965
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888965
subclass of: SO_0000673
so part of: LOC116888965
location: 7351991..7352079
location: region:7351991-7352079:1
so has part: feature:7351991-7352079:1:exon

position:7352079:1
position: 7352079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7351991-7352079:1:exon

LOC116888965
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888965
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC116888965
subclass of: SO_0000673
so part of: LOC116888965
location: 7352759..7353249
location: region:7352759-7353249:1
so has part: feature:7352759-7353249:1:exon

position:7352759:1
position: 7352759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7352759-7353249:1:exon

LOC116888966
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888966
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7647772..7655764
location: region:7647772-7655764:1
so has part: feature:7647772-7655764:1:exon

116888966
type: Gene
SIO_000068: ncbigene

position:7647772:1
position: 7647772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7655764:1
position: 7655764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7647772-7655764:1:exon

LOC116888966
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888966
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888966
subclass of: SO_0000673
so part of: LOC116888966
location: 7647772..7648100
location: region:7647772-7648100:1
so has part: feature:7647772-7648100:1:exon

position:7648100:1
position: 7648100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7647772-7648100:1:exon

LOC116888966
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888966
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888966
subclass of: SO_0000673
so part of: LOC116888966
location: 7655615..7655764
location: region:7655615-7655764:1
so has part: feature:7655615-7655764:1:exon

position:7655615:1
position: 7655615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7655615-7655764:1:exon

LOC116888967
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888967
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <7656608..7664319
location: region:7656608-7664319:1
so has part: feature:7656608-7664319:1:exon
subclass of: SO_0000010

116888967
type: Gene
SIO_000068: ncbigene

position:7656608:1
position: 7656608
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:7664319:1
position: 7664319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7656608-7664319:1:exon

LOC116888967
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888967
product: igE-binding protein-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890196.1
SIO_010081: LOC116888967
subclass of: SO_0000673
so part of: LOC116888967
location: join(<7656608..7657554,7664160..7664319)
location: region:7656608-7664319:1
so has part: feature:7656608-7657554:1:exon
so has part: feature:7664160-7664319:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7656608-7657554:1:exon

position:7657554:1
position: 7657554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7664160-7664319:1:exon

position:7664160:1
position: 7664160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888967
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888967
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: igE-binding protein-like
translation: EYNQIKELAESVRKYGXHANFTLTQLDRLAMTALTPADWQMIAKAALASMGQYMEWKALWYEAAQTQARANATALIPEQQEWTFELLTGQGRFAADQSAYHWGAYAQVSSTAIRAWKALSRRGGIDNQLTKIVQGPQENFSDFVARMTEAAGRIFGDPEQAAPLIEQLVFEQATQECRIAIAPRRNKGLQDWLRVCRELGGPLTNSGLAAAILQFQRRPVKGTDKRSCFQCGKTGHLKRDCRMTKRDRGSVTLCVRCGKGYHRADQCRSVRDIKGKLLPPLESRPNEMSKNGLXGPPSQGPQRYGNRFHRATTPQRRVDLMRCQKRLVGPGPRAPQRYGNRFQKAMTLTEETPQELTQNWTCVPPQTSF
SIO_010081: LOC116888967
subclass of: SO_0000673
so part of: LOC116888967
location: join(<7656608..7657554,7664160..7664319)
location: region:7656608-7664319:1
so has part: feature:7656608-7657554:1:exon
so has part: feature:7664160-7664319:1:exon

XP_032746087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7656608-7657554:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7664160-7664319:1:exon

LOC116889575
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889575
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(7688382..7688491)
location: region:7688382-7688491:-1
so has part: feature:7688382-7688491:-1:exon
subclass of: SO_0000623

116889575
type: Gene
SIO_000068: ncbigene

position:7688382:-1
position: 7688382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7688491:-1
position: 7688491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7688382-7688491:-1:exon

LOC116889575
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: snRNA
gene: LOC116889575
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004386491.1
SIO_010081: LOC116889575
subclass of: SO_0000673
so part of: LOC116889575
location: complement(7688382..7688491)
location: region:7688382-7688491:-1
so has part: feature:7688382-7688491:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7688382-7688491:-1:exon

LOC116889287
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889287
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7793950..7794589)
location: region:7793950-7794589:-1
so has part: feature:7793950-7794589:-1:exon

116889287
type: Gene
SIO_000068: ncbigene

position:7793950:-1
position: 7793950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7794589:-1
position: 7794589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7793950-7794589:-1:exon

LOC116889287
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116889287
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116889287
subclass of: SO_0000673
so part of: LOC116889287
location: complement(7793950..7794589)
location: region:7793950-7794589:-1
so has part: feature:7793950-7794589:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7793950-7794589:-1:exon

LOC116888770
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888770
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7854594..7855946)
location: region:7854594-7855946:-1
so has part: feature:7854594-7855946:-1:exon

116888770
type: Gene
SIO_000068: ncbigene

position:7854594:-1
position: 7854594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7855946:-1
position: 7855946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7854594-7855946:-1:exon

LOC116888770
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888770
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888770
subclass of: SO_0000673
so part of: LOC116888770
location: complement(7854594..7855946)
location: region:7854594-7855946:-1
so has part: feature:7854594-7855946:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7854594-7855946:-1:exon

LOC116888422
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888422
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7916683..7917231)
location: region:7916683-7917231:-1
so has part: feature:7916683-7917231:-1:exon
subclass of: SO_0000010

116888422
type: Gene
SIO_000068: ncbigene

position:7916683:-1
position: 7916683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7917231:-1
position: 7917231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7916683-7917231:-1:exon

LOC116888422
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888422
product: protein phosphatase inhibitor 2 family member C-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_032889691.1
SIO_010081: LOC116888422
subclass of: SO_0000673
so part of: LOC116888422
location: complement(7916683..7917231)
location: region:7916683-7917231:-1
so has part: feature:7916683-7917231:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7916683-7917231:-1:exon

LOC116888422
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888422
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase inhibitor 2 family member C-like
translation: MATSTTSHRPIKGILKNKSSTSSVEDSSQSSGRLGTQELQRKKSQKWDESNILATHYPSYKDYDLMKKNEPGNPYGSMSHDGEDTINEVQGKDAMTPDNLAKKLAASDTLGTSYQGEEQESSSAHSSKFFLDKQERQRQFELKRKLHYNEGLNIKLARQLISEELQSEVEEDENQQRLHSNY
SIO_010081: LOC116888422
subclass of: SO_0000673
so part of: LOC116888422
location: complement(7916683..7917231)
location: region:7916683-7917231:-1
so has part: feature:7916683-7917231:-1:exon

XP_032745582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7916683-7917231:-1:exon

LOC116889241
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889241
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8141164..8145114
location: region:8141164-8145114:1
so has part: feature:8141164-8145114:1:exon
subclass of: SO_0000011

116889241
type: Gene
SIO_000068: ncbigene

position:8141164:1
position: 8141164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8145114:1
position: 8145114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8141164-8145114:1:exon

LOC116889241
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116889241
product: uncharacterized LOC116889241
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004386369.1
SIO_010081: LOC116889241
subclass of: SO_0000673
so part of: LOC116889241
location: join(8141164..8141331,8144261..8145114)
location: region:8141164-8145114:1
so has part: feature:8141164-8141331:1:exon
so has part: feature:8144261-8145114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8141164-8141331:1:exon

position:8141331:1
position: 8141331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8144261-8145114:1:exon

position:8144261:1
position: 8144261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116888968
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888968
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8174511..8177990)
location: region:8174511-8177990:-1
so has part: feature:8174511-8177990:-1:exon

116888968
type: Gene
SIO_000068: ncbigene

position:8174511:-1
position: 8174511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8177990:-1
position: 8177990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8174511-8177990:-1:exon

LOC116888968
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888968
subclass of: SO_0000673
so part of: LOC116888968
location: complement(8174511..8175485)
location: region:8174511-8175485:-1
so has part: feature:8174511-8175485:-1:exon

position:8175485:-1
position: 8175485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8174511-8175485:-1:exon

LOC116888968
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888968
subclass of: SO_0000673
so part of: LOC116888968
location: complement(8175582..8177882)
location: region:8175582-8177882:-1
so has part: feature:8175582-8177882:-1:exon

position:8175582:-1
position: 8175582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8177882:-1
position: 8177882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8175582-8177882:-1:exon

LOC116888968
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888968
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888968
subclass of: SO_0000673
so part of: LOC116888968
location: complement(8177977..8177990)
location: region:8177977-8177990:-1
so has part: feature:8177977-8177990:-1:exon

position:8177977:-1
position: 8177977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8177977-8177990:-1:exon

LOC116888969
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888969
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8178180..8179513)
location: region:8178180-8179513:-1
so has part: feature:8178180-8179513:-1:exon

116888969
type: Gene
SIO_000068: ncbigene

position:8178180:-1
position: 8178180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8179513:-1
position: 8179513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8178180-8179513:-1:exon

LOC116888969
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888969
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 8% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888969
subclass of: SO_0000673
so part of: LOC116888969
location: complement(8178180..8179513)
location: region:8178180-8179513:-1
so has part: feature:8178180-8179513:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8178180-8179513:-1:exon

Usp9x
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Usp9x
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8198472..8335190)
location: region:8198472-8335190:-1
so has part: feature:8198472-8335190:-1:exon
subclass of: SO_0000010

116888385
type: Gene
SIO_000068: ncbigene

position:8198472:-1
position: 8198472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8335190:-1
position: 8335190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8198472-8335190:-1:exon

Usp9x
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Usp9x
product: ubiquitin specific peptidase 9 X-linked
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 144 ESTs, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_032889660.1
SIO_010081: Usp9x
subclass of: SO_0000673
so part of: Usp9x
location: complement(join(8198472..8202469,8204714..8204809,8205784..8205996,8206395..8206551,8209304..8209392,8209480..8209700,8210056..8210241,8212360..8212489,8213232..8213457,8214481..8214604,8215370..8216112,8216926..8217067,8218826..8218999,8222224..8222414,8225078..8225298,8227302..8227524,8228354..8228500,8229253..8229399,8229597..8229705,8231534..8231700,8233031..8233156,8234685..8234810,8237088..8237366,8237548..8237678,8240578..8240698,8241421..8241570,8242044..8242284,8244742..8244953,8245490..8245585,8246624..8246966,8248334..8248421,8258965..8259098,8260724..8260860,8261585..8261791,8263566..8263671,8265179..8265331,8267392..8267530,8267605..8267856,8268217..8268332,8272080..8272298,8273639..8273751,8277533..8277612,8279524..8279669,8282076..8282329,8323352..8323468,8332528..8332612,8333316..8333476,8334639..8335190))
location: region:8198472-8335190:-1
so has part: feature:8334639-8335190:-1:exon
so has part: feature:8333316-8333476:-1:exon
so has part: feature:8332528-8332612:-1:exon
so has part: feature:8323352-8323468:-1:exon
so has part: feature:8282076-8282329:-1:exon
so has part: feature:8279524-8279669:-1:exon
so has part: feature:8277533-8277612:-1:exon
so has part: feature:8273639-8273751:-1:exon
so has part: feature:8272080-8272298:-1:exon
so has part: feature:8268217-8268332:-1:exon
so has part: feature:8267605-8267856:-1:exon
so has part: feature:8267392-8267530:-1:exon
so has part: feature:8265179-8265331:-1:exon
so has part: feature:8263566-8263671:-1:exon
so has part: feature:8261585-8261791:-1:exon
so has part: feature:8260724-8260860:-1:exon
so has part: feature:8258965-8259098:-1:exon
so has part: feature:8248334-8248421:-1:exon
so has part: feature:8246624-8246966:-1:exon
so has part: feature:8245490-8245585:-1:exon
so has part: feature:8244742-8244953:-1:exon
so has part: feature:8242044-8242284:-1:exon
so has part: feature:8241421-8241570:-1:exon
so has part: feature:8240578-8240698:-1:exon
so has part: feature:8237548-8237678:-1:exon
so has part: feature:8237088-8237366:-1:exon
so has part: feature:8234685-8234810:-1:exon
so has part: feature:8233031-8233156:-1:exon
so has part: feature:8231534-8231700:-1:exon
so has part: feature:8229597-8229705:-1:exon
so has part: feature:8229253-8229399:-1:exon
so has part: feature:8228354-8228500:-1:exon
so has part: feature:8227302-8227524:-1:exon
so has part: feature:8225078-8225298:-1:exon
so has part: feature:8222224-8222414:-1:exon
so has part: feature:8218826-8218999:-1:exon
so has part: feature:8216926-8217067:-1:exon
so has part: feature:8215370-8216112:-1:exon
so has part: feature:8214481-8214604:-1:exon
so has part: feature:8213232-8213457:-1:exon
so has part: feature:8212360-8212489:-1:exon
so has part: feature:8210056-8210241:-1:exon
so has part: feature:8209480-8209700:-1:exon
so has part: feature:8209304-8209392:-1:exon
so has part: feature:8206395-8206551:-1:exon
so has part: feature:8205784-8205996:-1:exon
so has part: feature:8204714-8204809:-1:exon
so has part: feature:8198472-8202469:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8334639-8335190:-1:exon

position:8334639:-1
position: 8334639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8333316-8333476:-1:exon

position:8333316:-1
position: 8333316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8333476:-1
position: 8333476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8332528-8332612:-1:exon

position:8332528:-1
position: 8332528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8332612:-1
position: 8332612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8323352-8323468:-1:exon

position:8323352:-1
position: 8323352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8323468:-1
position: 8323468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8282076-8282329:-1:exon

position:8282076:-1
position: 8282076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8282329:-1
position: 8282329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8279524-8279669:-1:exon

position:8279524:-1
position: 8279524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8279669:-1
position: 8279669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8277533-8277612:-1:exon

position:8277533:-1
position: 8277533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8277612:-1
position: 8277612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8273639-8273751:-1:exon

position:8273639:-1
position: 8273639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8273751:-1
position: 8273751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8272080-8272298:-1:exon

position:8272080:-1
position: 8272080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8272298:-1
position: 8272298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8268217-8268332:-1:exon

position:8268217:-1
position: 8268217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8268332:-1
position: 8268332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8267605-8267856:-1:exon

position:8267605:-1
position: 8267605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8267856:-1
position: 8267856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:8267392-8267530:-1:exon

position:8267392:-1
position: 8267392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8267530:-1
position: 8267530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:8265179-8265331:-1:exon

position:8265179:-1
position: 8265179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8265331:-1
position: 8265331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:8263566-8263671:-1:exon

position:8263566:-1
position: 8263566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8263671:-1
position: 8263671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:8261585-8261791:-1:exon

position:8261585:-1
position: 8261585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8261791:-1
position: 8261791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:8260724-8260860:-1:exon

position:8260724:-1
position: 8260724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8260860:-1
position: 8260860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:8258965-8259098:-1:exon

position:8258965:-1
position: 8258965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8259098:-1
position: 8259098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:8248334-8248421:-1:exon

position:8248334:-1
position: 8248334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8248421:-1
position: 8248421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:8246624-8246966:-1:exon

position:8246624:-1
position: 8246624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8246966:-1
position: 8246966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:8245490-8245585:-1:exon

position:8245490:-1
position: 8245490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8245585:-1
position: 8245585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:8244742-8244953:-1:exon

position:8244742:-1
position: 8244742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8244953:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:8242044-8242284:-1:exon

position:8242044:-1
position: 8242044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8242284:-1
position: 8242284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:8241421-8241570:-1:exon

position:8241421:-1
position: 8241421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8241570:-1
position: 8241570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:8240578-8240698:-1:exon

position:8240578:-1
position: 8240578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8240698:-1
position: 8240698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:8237548-8237678:-1:exon

position:8237548:-1
position: 8237548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8237678:-1
position: 8237678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:8237088-8237366:-1:exon

position:8237088:-1
position: 8237088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8237366:-1
position: 8237366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:8234685-8234810:-1:exon

position:8234685:-1
position: 8234685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8234810:-1
position: 8234810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:8233031-8233156:-1:exon

position:8233031:-1
position: 8233031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8233156:-1
position: 8233156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:8231534-8231700:-1:exon

position:8231534:-1
position: 8231534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8231700:-1
position: 8231700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:8229597-8229705:-1:exon

position:8229597:-1
position: 8229597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8229705:-1
position: 8229705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:8229253-8229399:-1:exon

position:8229253:-1
position: 8229253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8229399:-1
position: 8229399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:8228354-8228500:-1:exon

position:8228354:-1
position: 8228354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8228500:-1
position: 8228500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:8227302-8227524:-1:exon

position:8227302:-1
position: 8227302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8227524:-1
position: 8227524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:8225078-8225298:-1:exon

position:8225078:-1
position: 8225078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8225298:-1
position: 8225298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:8222224-8222414:-1:exon

position:8222224:-1
position: 8222224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8222414:-1
position: 8222414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:8218826-8218999:-1:exon

position:8218826:-1
position: 8218826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8218999:-1
position: 8218999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:8216926-8217067:-1:exon

position:8216926:-1
position: 8216926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8217067:-1
position: 8217067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:8215370-8216112:-1:exon

position:8215370:-1
position: 8215370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8216112:-1
position: 8216112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:8214481-8214604:-1:exon

position:8214481:-1
position: 8214481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8214604:-1
position: 8214604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:8213232-8213457:-1:exon

position:8213232:-1
position: 8213232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8213457:-1
position: 8213457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:8212360-8212489:-1:exon

position:8212360:-1
position: 8212360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8212489:-1
position: 8212489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:8210056-8210241:-1:exon

position:8210056:-1
position: 8210056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8210241:-1
position: 8210241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:8209480-8209700:-1:exon

position:8209480:-1
position: 8209480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8209700:-1
position: 8209700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:8209304-8209392:-1:exon

position:8209304:-1
position: 8209304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8209392:-1
position: 8209392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 45
SIO_000628: feature:8206395-8206551:-1:exon

position:8206395:-1
position: 8206395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8206551:-1
position: 8206551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 46
SIO_000628: feature:8205784-8205996:-1:exon

position:8205784:-1
position: 8205784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8205996:-1
position: 8205996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 47
SIO_000628: feature:8204714-8204809:-1:exon

position:8204714:-1
position: 8204714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8204809:-1
position: 8204809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 48
SIO_000628: feature:8198472-8202469:-1:exon

position:8202469:-1
position: 8202469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Usp9x
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Usp9x
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
translation: MTATTRGSPVGGNDNQGQAPDGQSQPPLQQNQTSSPDSSNENSPATPPDEQGQGDAPPQIEDEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKSEACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLAQDWFPLLELLAMALNPHCKFHIYNGTRPCESVSSSVQLPEDELFARSPDPRSPKGWLVDLLNKFGTLNGFQILHDRFINGSALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPIIEMVPQFLENLTDEELKKEAKNEAKNDALSMIIKSLKSLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNKVISSVSYYTHRHGSSEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLVIIFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDLALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFYRHDLINQLQHNHALVTLVAENLATYMESMRLYGRDNEDYDPQTVRVGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFFESNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWRVVIQSNDDIASRAIDLLKEIYTNLGPRLQVNQVVIHEDFIQSCFDRLKASYDTLCVLDGDKDSINCARQEAVRMVRVLTVLREYINECDSDYHEERTILPMSRAFRGKHLSFIVRFPNQGRQVDDLEVWSHTNDTIGSVRRCILNRIKANVAHTKIELFVGGELIDPGDDRKLIGQLNLKDKSLITAKLTQISSNMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHPRYISFLWQVADLGSSLNMPPLRDGARVLMKLMPPDSTTIEKLRAICLDHAKLGESSLSPSLDSLFFGPSASQVLYLTEVVYALLMPAGAPLADDSSDFQFHFLKSGGLPLVLSMLTRNNFLPNADMETRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPGVEGVNPMTSVNQVTHDQAVVLQSALQSIPNPSSECMLRNVSVRLAQQISDEASRYMPDICVIRAIQKIIWTSGCGGLQLVFSPNEEVTKIYEKTNAGNEPDLEDEQVCCEALEVMTLCFALIPTALDALSKEKAWQTFIIDLLLHCHSKTVRQVAQEQFFLMCTRCCMGHRPLLFFITLLFTVLGSTARERAKHSGDYFTLLRHLLNYAYNSNINVPNAEVLLNNEIDWLKRIRDDVKRTGETGIEETILEGHLGVTKELLAFQTPEKKFHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIPVCGSPATINAGFELLVALAVGCVRNLKQIVDSLTEMYYIGTAITTCEALTEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPRDDVFGYPQQFEDKPPLSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRLITDQEECTVKFNDYFEFLELDMEPXTVAGVAKLEGDNVNPESQLIQQNEQSESEKAGSTKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTIDHDDEVIRYISEIAITTRPHQIVMPSAIERSVLKQSVQFINNX…
SIO_010081: Usp9x
subclass of: SO_0000673
so part of: Usp9x
location: complement(join(8202332..8202469,8204714..8204809,8205784..8205996,8206395..8206551,8209304..8209392,8209480..8209700,8210056..8210241,8212360..8212489,8213232..8213457,8214481..8214604,8215370..8216112,8216926..8217067,8218826..8218999,8222224..8222414,8225078..8225298,8227302..8227524,8228354..8228500,8229253..8229399,8229597..8229705,8231534..8231700,8233031..8233156,8234685..8234810,8237088..8237366,8237548..8237678,8240578..8240698,8241421..8241570,8242044..8242284,8244742..8244953,8245490..8245585,8246624..8246966,8248334..8248421,8258965..8259098,8260724..8260860,8261585..8261791,8263566..8263671,8265179..8265331,8267392..8267530,8267605..8267856,8268217..8268332,8272080..8272298,8273639..8273751,8277533..8277612,8279524..8279669,8282076..8282171))
location: region:8202332-8282171:-1
so has part: feature:8282076-8282171:-1:exon
so has part: feature:8279524-8279669:-1:exon
so has part: feature:8277533-8277612:-1:exon
so has part: feature:8273639-8273751:-1:exon
so has part: feature:8272080-8272298:-1:exon
so has part: feature:8268217-8268332:-1:exon
so has part: feature:8267605-8267856:-1:exon
so has part: feature:8267392-8267530:-1:exon
so has part: feature:8265179-8265331:-1:exon
so has part: feature:8263566-8263671:-1:exon
so has part: feature:8261585-8261791:-1:exon
so has part: feature:8260724-8260860:-1:exon
so has part: feature:8258965-8259098:-1:exon
so has part: feature:8248334-8248421:-1:exon
so has part: feature:8246624-8246966:-1:exon
so has part: feature:8245490-8245585:-1:exon
so has part: feature:8244742-8244953:-1:exon
so has part: feature:8242044-8242284:-1:exon
so has part: feature:8241421-8241570:-1:exon
so has part: feature:8240578-8240698:-1:exon
so has part: feature:8237548-8237678:-1:exon
so has part: feature:8237088-8237366:-1:exon
so has part: feature:8234685-8234810:-1:exon
so has part: feature:8233031-8233156:-1:exon
so has part: feature:8231534-8231700:-1:exon
so has part: feature:8229597-8229705:-1:exon
so has part: feature:8229253-8229399:-1:exon
so has part: feature:8228354-8228500:-1:exon
so has part: feature:8227302-8227524:-1:exon
so has part: feature:8225078-8225298:-1:exon
so has part: feature:8222224-8222414:-1:exon
so has part: feature:8218826-8218999:-1:exon
so has part: feature:8216926-8217067:-1:exon
so has part: feature:8215370-8216112:-1:exon
so has part: feature:8214481-8214604:-1:exon
so has part: feature:8213232-8213457:-1:exon
so has part: feature:8212360-8212489:-1:exon
so has part: feature:8210056-8210241:-1:exon
so has part: feature:8209480-8209700:-1:exon
so has part: feature:8209304-8209392:-1:exon
so has part: feature:8206395-8206551:-1:exon
so has part: feature:8205784-8205996:-1:exon
so has part: feature:8204714-8204809:-1:exon
so has part: feature:8202332-8202469:-1:exon

XP_032745551.1
type: Protein
SIO_000068: ncbiprotein

position:8202332:-1
position: 8202332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8282171:-1
position: 8282171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8282076-8282171:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8279524-8279669:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8277533-8277612:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8273639-8273751:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8272080-8272298:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8268217-8268332:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8267605-8267856:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8267392-8267530:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8265179-8265331:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8263566-8263671:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8261585-8261791:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8260724-8260860:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8258965-8259098:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8248334-8248421:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:8246624-8246966:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:8245490-8245585:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:8244742-8244953:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:8242044-8242284:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:8241421-8241570:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:8240578-8240698:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:8237548-8237678:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:8237088-8237366:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:8234685-8234810:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:8233031-8233156:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:8231534-8231700:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:8229597-8229705:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:8229253-8229399:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:8228354-8228500:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:8227302-8227524:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:8225078-8225298:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:8222224-8222414:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:8218826-8218999:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:8216926-8217067:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:8215370-8216112:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:8214481-8214604:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:8213232-8213457:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:8212360-8212489:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:8210056-8210241:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:8209480-8209700:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:8209304-8209392:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:8206395-8206551:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:8205784-8205996:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:8204714-8204809:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:8202332-8202469:-1:exon

LOC116888386
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888386
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 8285089..8285518
location: region:8285089-8285518:1
so has part: feature:8285089-8285518:1:exon

116888386
type: Gene
SIO_000068: ncbigene

position:8285089:1
position: 8285089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8285518:1
position: 8285518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8285089-8285518:1:exon

LOC116888386
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888386
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888386
subclass of: SO_0000673
so part of: LOC116888386
location: 8285089..8285264
location: region:8285089-8285264:1
so has part: feature:8285089-8285264:1:exon

position:8285264:1
position: 8285264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8285089-8285264:1:exon

LOC116888386
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888386
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888386
subclass of: SO_0000673
so part of: LOC116888386
location: 8285296..8285518
location: region:8285296-8285518:1
so has part: feature:8285296-8285518:1:exon

position:8285296:1
position: 8285296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8285296-8285518:1:exon

LOC116888534
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888534
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8448681..8450014)
location: region:8448681-8450014:-1
so has part: feature:8448681-8450014:-1:exon

116888534
type: Gene
SIO_000068: ncbigene

position:8448681:-1
position: 8448681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8450014:-1
position: 8450014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8448681-8450014:-1:exon

LOC116888534
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888534
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888534
subclass of: SO_0000673
so part of: LOC116888534
location: complement(8448681..8450014)
location: region:8448681-8450014:-1
so has part: feature:8448681-8450014:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8448681-8450014:-1:exon

Tma7
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Tma7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8472827..8473286
location: region:8472827-8473286:1
so has part: feature:8472827-8473286:1:exon
subclass of: SO_0000010

116888740
type: Gene
SIO_000068: ncbigene

position:8472827:1
position: 8472827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8473286:1
position: 8473286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8472827-8473286:1:exon

Tma7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Tma7
product: translation machinery associated 7 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 3 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890033.1
SIO_010081: Tma7
subclass of: SO_0000673
so part of: Tma7
location: 8472827..8473286
location: region:8472827-8473286:1
so has part: feature:8472827-8473286:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8472827-8473286:1:exon

Tma7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Tma7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translation machinery-associated protein 7
translation: MSGRKGGKKKPLKQPKKQTKEMDEEDKTFKQKQKEEQKKLEELKAKAMGKGPLVTGGIKKSGKK
SIO_010081: Tma7
subclass of: SO_0000673
so part of: Tma7
location: 8472863..8473057
location: region:8472863-8473057:1
so has part: feature:8472863-8473057:1:exon

XP_032745924.1
type: Protein
SIO_000068: ncbiprotein

position:8472863:1
position: 8472863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8473057:1
position: 8473057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8472863-8473057:1:exon

LOC116888545
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888545
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8481597..8482310)
location: region:8481597-8482310:-1
so has part: feature:8481597-8482310:-1:exon

116888545
type: Gene
SIO_000068: ncbigene

position:8481597:-1
position: 8481597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8482310:-1
position: 8482310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8481597-8482310:-1:exon

LOC116888545
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888545
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 119 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888545
subclass of: SO_0000673
so part of: LOC116888545
location: complement(8481597..8482310)
location: region:8481597-8482310:-1
so has part: feature:8481597-8482310:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8481597-8482310:-1:exon

LOC116888755
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888755
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8600127..8602067)
location: region:8600127-8602067:-1
so has part: feature:8600127-8602067:-1:exon
subclass of: SO_0000010

116888755
type: Gene
SIO_000068: ncbigene

position:8600127:-1
position: 8600127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8602067:-1
position: 8602067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8600127-8602067:-1:exon

LOC116888755
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116888755
product: protein FAM133B-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890049.1
SIO_010081: LOC116888755
subclass of: SO_0000673
so part of: LOC116888755
location: complement(8600127..8602067)
location: region:8600127-8602067:-1
so has part: feature:8600127-8602067:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8600127-8602067:-1:exon

LOC116888755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116888755
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein FAM133B-like
translation: MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKNREKVLSRNESSSKKRQKKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQTKRRKKKKSHCHKSRETSASDSDSDSKDGSKKKKKSRDVTEREKRVSKKRKMYEDKPLSSDSLSESDCAEVQAKKKKSGEERERTTDKAKKRRKHKKHSKKKKKKAASASSDSP
SIO_010081: LOC116888755
subclass of: SO_0000673
so part of: LOC116888755
location: complement(8601277..8602005)
location: region:8601277-8602005:-1
so has part: feature:8601277-8602005:-1:exon

XP_032745940.1
type: Protein
SIO_000068: ncbiprotein

position:8601277:-1
position: 8601277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8602005:-1
position: 8602005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8601277-8602005:-1:exon

LOC116888971
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888971
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 8602004..8611654
location: region:8602004-8611654:1
so has part: feature:8602004-8611654:1:exon

116888971
type: Gene
SIO_000068: ncbigene

position:8602004:1
position: 8602004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8611654:1
position: 8611654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8602004-8611654:1:exon

LOC116888971
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888971
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
pseudo: true
SIO_010081: LOC116888971
subclass of: SO_0000673
so part of: LOC116888971
location: 8602004..8602131
location: region:8602004-8602131:1
so has part: feature:8602004-8602131:1:exon

position:8602131:1
position: 8602131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8602004-8602131:1:exon

LOC116888971
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888971
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
pseudo: true
SIO_010081: LOC116888971
subclass of: SO_0000673
so part of: LOC116888971
location: 8611085..8611654
location: region:8611085-8611654:1
so has part: feature:8611085-8611654:1:exon

position:8611085:1
position: 8611085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8611085-8611654:1:exon

Med14
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Med14
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8631948..8714990
location: region:8631948-8714990:1
so has part: feature:8631948-8714990:1:exon
subclass of: SO_0000010

116888990
type: Gene
SIO_000068: ncbigene

position:8631948:1
position: 8631948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8714990:1
position: 8714990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8631948-8714990:1:exon

Med14
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Med14
product: mediator complex subunit 14
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 ESTs, 8 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890208.1
SIO_010081: Med14
subclass of: SO_0000673
so part of: Med14
location: join(8631948..8632459,8637421..8637447,8639566..8639671,8644625..8644798,8645407..8645536,8645981..8646109,8646380..8646487,8647210..8647342,8648082..8648232,8649208..8649319,8665621..8665746,8669937..8670015,8673375..8673534,8676166..8676360,8677251..8677385,8679316..8679400,8686345..8686505,8686590..8686737,8687803..8687894,8689246..8689398,8689667..8689939,8694875..8695012,8697935..8698046,8702044..8702175,8704386..8704568,8705390..8705625,8706778..8706957,8707057..8707164,8709654..8709779,8710120..8710312,8712894..8714990)
location: region:8631948-8714990:1
so has part: feature:8631948-8632459:1:exon
so has part: feature:8637421-8637447:1:exon
so has part: feature:8639566-8639671:1:exon
so has part: feature:8644625-8644798:1:exon
so has part: feature:8645407-8645536:1:exon
so has part: feature:8645981-8646109:1:exon
so has part: feature:8646380-8646487:1:exon
so has part: feature:8647210-8647342:1:exon
so has part: feature:8648082-8648232:1:exon
so has part: feature:8649208-8649319:1:exon
so has part: feature:8665621-8665746:1:exon
so has part: feature:8669937-8670015:1:exon
so has part: feature:8673375-8673534:1:exon
so has part: feature:8676166-8676360:1:exon
so has part: feature:8677251-8677385:1:exon
so has part: feature:8679316-8679400:1:exon
so has part: feature:8686345-8686505:1:exon
so has part: feature:8686590-8686737:1:exon
so has part: feature:8687803-8687894:1:exon
so has part: feature:8689246-8689398:1:exon
so has part: feature:8689667-8689939:1:exon
so has part: feature:8694875-8695012:1:exon
so has part: feature:8697935-8698046:1:exon
so has part: feature:8702044-8702175:1:exon
so has part: feature:8704386-8704568:1:exon
so has part: feature:8705390-8705625:1:exon
so has part: feature:8706778-8706957:1:exon
so has part: feature:8707057-8707164:1:exon
so has part: feature:8709654-8709779:1:exon
so has part: feature:8710120-8710312:1:exon
so has part: feature:8712894-8714990:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8631948-8632459:1:exon

position:8632459:1
position: 8632459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8637421-8637447:1:exon

position:8637421:1
position: 8637421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8637447:1
position: 8637447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8639566-8639671:1:exon

position:8639566:1
position: 8639566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8639671:1
position: 8639671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8644625-8644798:1:exon

position:8644625:1
position: 8644625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8644798:1
position: 8644798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8645407-8645536:1:exon

position:8645407:1
position: 8645407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8645536:1
position: 8645536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8645981-8646109:1:exon

position:8645981:1
position: 8645981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8646109:1
position: 8646109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8646380-8646487:1:exon

position:8646380:1
position: 8646380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8646487:1
position: 8646487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8647210-8647342:1:exon

position:8647210:1
position: 8647210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8647342:1
position: 8647342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8648082-8648232:1:exon

position:8648082:1
position: 8648082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8648232:1
position: 8648232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8649208-8649319:1:exon

position:8649208:1
position: 8649208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8649319:1
position: 8649319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8665621-8665746:1:exon

position:8665621:1
position: 8665621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8665746:1
position: 8665746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:8669937-8670015:1:exon

position:8669937:1
position: 8669937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8670015:1
position: 8670015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:8673375-8673534:1:exon

position:8673375:1
position: 8673375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8673534:1
position: 8673534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:8676166-8676360:1:exon

position:8676166:1
position: 8676166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8676360:1
position: 8676360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:8677251-8677385:1:exon

position:8677251:1
position: 8677251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8677385:1
position: 8677385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:8679316-8679400:1:exon

position:8679316:1
position: 8679316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8679400:1
position: 8679400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:8686345-8686505:1:exon

position:8686345:1
position: 8686345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8686505:1
position: 8686505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:8686590-8686737:1:exon

position:8686590:1
position: 8686590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8686737:1
position: 8686737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:8687803-8687894:1:exon

position:8687803:1
position: 8687803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8687894:1
position: 8687894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:8689246-8689398:1:exon

position:8689246:1
position: 8689246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8689398:1
position: 8689398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:8689667-8689939:1:exon

position:8689667:1
position: 8689667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8689939:1
position: 8689939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:8694875-8695012:1:exon

position:8694875:1
position: 8694875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8695012:1
position: 8695012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:8697935-8698046:1:exon

position:8697935:1
position: 8697935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8698046:1
position: 8698046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:8702044-8702175:1:exon

position:8702044:1
position: 8702044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8702175:1
position: 8702175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:8704386-8704568:1:exon

position:8704386:1
position: 8704386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8704568:1
position: 8704568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:8705390-8705625:1:exon

position:8705390:1
position: 8705390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8705625:1
position: 8705625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:8706778-8706957:1:exon

position:8706778:1
position: 8706778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8706957:1
position: 8706957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:8707057-8707164:1:exon

position:8707057:1
position: 8707057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8707164:1
position: 8707164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:8709654-8709779:1:exon

position:8709654:1
position: 8709654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8709779:1
position: 8709779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:8710120-8710312:1:exon

position:8710120:1
position: 8710120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8710312:1
position: 8710312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:8712894-8714990:1:exon

position:8712894:1
position: 8712894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Med14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Med14
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:8689883..8689885,aa:OTHER)
product: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14
translation: MAPVQLENHQLIPPGGGGGSGGGGGSSSGSASVPAPPPPGAAVAAAAAAAASPGYRLSTLIEFLLHRAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANDAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPEVPWRLLKLEILVEDKETGDGRALVHSMQIDFIHQLVQSRLFADEKPLQDMYNCLHCFCLSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRSFNANENSSIETALPALIVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLEDMEKSLNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTITTETLQLANYATHPIGSLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVSTADRDDSPAMALLLQQFKDNIQDLMSCTNTGKQTRTGTKHKLSDDSCPVECKKAKRSGETCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEXPHQECKWKDGFSHAIGLLKSKLVIPPCKGISEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWSSIARLYECVLEFARSLPEIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDIYCPWSGCMWRYWGRCLXSFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLQPPQQQPFPKQPGTSGAYPLTSPPASYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGALDPSSPYTMVSPSGRAGNWPGSPQVSGPSPATRLPGMSPANPSLHSPVPDVSHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSXTPGLVPGLANSYLYSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP
SIO_010081: Med14
subclass of: SO_0000673
so part of: Med14
location: join(8632227..8632459,8637421..8637447,8639566..8639671,8644625..8644798,8645407..8645536,8645981..8646109,8646380..8646487,8647210..8647342,8648082..8648232,8649208..8649319,8665621..8665746,8669937..8670015,8673375..8673534,8676166..8676360,8677251..8677385,8679316..8679400,8686345..8686505,8686590..8686737,8687803..8687894,8689246..8689398,8689667..8689939,8694875..8695012,8697935..8698046,8702044..8702175,8704386..8704568,8705390..8705625,8706778..8706957,8707057..8707164,8709654..8709779,8710120..8710312,8712894..8712967)
location: region:8632227-8712967:1
so has part: feature:8632227-8632459:1:exon
so has part: feature:8637421-8637447:1:exon
so has part: feature:8639566-8639671:1:exon
so has part: feature:8644625-8644798:1:exon
so has part: feature:8645407-8645536:1:exon
so has part: feature:8645981-8646109:1:exon
so has part: feature:8646380-8646487:1:exon
so has part: feature:8647210-8647342:1:exon
so has part: feature:8648082-8648232:1:exon
so has part: feature:8649208-8649319:1:exon
so has part: feature:8665621-8665746:1:exon
so has part: feature:8669937-8670015:1:exon
so has part: feature:8673375-8673534:1:exon
so has part: feature:8676166-8676360:1:exon
so has part: feature:8677251-8677385:1:exon
so has part: feature:8679316-8679400:1:exon
so has part: feature:8686345-8686505:1:exon
so has part: feature:8686590-8686737:1:exon
so has part: feature:8687803-8687894:1:exon
so has part: feature:8689246-8689398:1:exon
so has part: feature:8689667-8689939:1:exon
so has part: feature:8694875-8695012:1:exon
so has part: feature:8697935-8698046:1:exon
so has part: feature:8702044-8702175:1:exon
so has part: feature:8704386-8704568:1:exon
so has part: feature:8705390-8705625:1:exon
so has part: feature:8706778-8706957:1:exon
so has part: feature:8707057-8707164:1:exon
so has part: feature:8709654-8709779:1:exon
so has part: feature:8710120-8710312:1:exon
so has part: feature:8712894-8712967:1:exon

XP_032746099.1
type: Protein
SIO_000068: ncbiprotein

position:8632227:1
position: 8632227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8712967:1
position: 8712967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8632227-8632459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8637421-8637447:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8639566-8639671:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8644625-8644798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8645407-8645536:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8645981-8646109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8646380-8646487:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8647210-8647342:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8648082-8648232:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8649208-8649319:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8665621-8665746:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8669937-8670015:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8673375-8673534:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8676166-8676360:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:8677251-8677385:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:8679316-8679400:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:8686345-8686505:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:8686590-8686737:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:8687803-8687894:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:8689246-8689398:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:8689667-8689939:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:8694875-8695012:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:8697935-8698046:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:8702044-8702175:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:8704386-8704568:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:8705390-8705625:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:8706778-8706957:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:8707057-8707164:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:8709654-8709779:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:8710120-8710312:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:8712894-8712967:1:exon

CXHXorf38
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: CXHXorf38
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8715280..8737463
location: region:8715280-8737463:1
so has part: feature:8715280-8737463:1:exon
subclass of: SO_0000010

116888991
type: Gene
SIO_000068: ncbigene

position:8715280:1
position: 8715280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8737463:1
position: 8737463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8715280-8737463:1:exon

CXHXorf38
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: CXHXorf38
product: chromosome X CXorf38 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890209.1
SIO_010081: CXHXorf38
subclass of: SO_0000673
so part of: CXHXorf38
location: join(8715280..8717157,8717311..8717445,8721724..8721843,8723906..8724055,8725313..8725492,8728387..8728549,8737092..8737463)
location: region:8715280-8737463:1
so has part: feature:8715280-8717157:1:exon
so has part: feature:8717311-8717445:1:exon
so has part: feature:8721724-8721843:1:exon
so has part: feature:8723906-8724055:1:exon
so has part: feature:8725313-8725492:1:exon
so has part: feature:8728387-8728549:1:exon
so has part: feature:8737092-8737463:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8715280-8717157:1:exon

position:8717157:1
position: 8717157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8717311-8717445:1:exon

position:8717311:1
position: 8717311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8717445:1
position: 8717445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8721724-8721843:1:exon

position:8721724:1
position: 8721724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8721843:1
position: 8721843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8723906-8724055:1:exon

position:8723906:1
position: 8723906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8724055:1
position: 8724055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8725313-8725492:1:exon

position:8725313:1
position: 8725313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8725492:1
position: 8725492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8728387-8728549:1:exon

position:8728387:1
position: 8728387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8728549:1
position: 8728549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8737092-8737463:1:exon

position:8737092:1
position: 8737092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CXHXorf38
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: CXHXorf38
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein CXorf38 homolog
translation: MVLSELAARLNCAEYKNWVKAGQCLLLLRSSLQGFVNREVLSFHRGLLTAVPGLGPQATCRGGSRCSPRARQFQPHCQVCTDWKREILRHHINRNGDVHWGNCRPGLWPVDPWEVAKAFMPRGLADKRGPEECDAVALLSLINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQIKIQNFLNEFKNIPEIVAVYSRIEQLLTSDWAVHIPEEDERDGCEFETESYLSVSQIHEIEIELLKEKLQEMYLQAAEEEVLSEEISNQLDVVKGFLQSNTDLRNGLTEDLQKLDSLHLQHQKQISKDAGSQTPERKT
SIO_010081: CXHXorf38
subclass of: SO_0000673
so part of: CXHXorf38
location: join(8716942..8717157,8717311..8717445,8721724..8721843,8723906..8724055,8725313..8725492,8728387..8728548)
location: region:8716942-8728548:1
so has part: feature:8716942-8717157:1:exon
so has part: feature:8717311-8717445:1:exon
so has part: feature:8721724-8721843:1:exon
so has part: feature:8723906-8724055:1:exon
so has part: feature:8725313-8725492:1:exon
so has part: feature:8728387-8728548:1:exon

XP_032746100.1
type: Protein
SIO_000068: ncbiprotein

position:8716942:1
position: 8716942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8728548:1
position: 8728548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8716942-8717157:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8717311-8717445:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8721724-8721843:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8723906-8724055:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8725313-8725492:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8728387-8728548:1:exon

Mpc1l
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Mpc1l
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8733158..8734061)
location: region:8733158-8734061:-1
so has part: feature:8733158-8734061:-1:exon
subclass of: SO_0000010

116888989
type: Gene
SIO_000068: ncbigene

position:8733158:-1
position: 8733158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8734061:-1
position: 8734061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8733158-8734061:-1:exon

Mpc1l
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Mpc1l
product: mitochondrial pyruvate carrier 1 like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 6 Proteins
transcript id: XM_032890207.1
SIO_010081: Mpc1l
subclass of: SO_0000673
so part of: Mpc1l
location: complement(8733158..8734061)
location: region:8733158-8734061:-1
so has part: feature:8733158-8734061:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8733158-8734061:-1:exon

Mpc1l
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Mpc1l
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial pyruvate carrier 1-like protein
translation: MCYSRKPLLSLPKASRQQHVNWCALWQRRKSIKLLAIAASGTSVRSSFRTPLLVGGLAIGTSPTEATMAVVVALIRKTRDYIKTKEFRDYITSTHFWGPVANWGLPLAAFKDMKAPPDIISGRMTTALIFYSMAFMRFAYRVQPRNYLLMACHFTNVLAQSIQASRYLSHRYGGGATAKATKPPAK
SIO_010081: Mpc1l
subclass of: SO_0000673
so part of: Mpc1l
location: complement(8733353..8733913)
location: region:8733353-8733913:-1
so has part: feature:8733353-8733913:-1:exon

XP_032746098.1
type: Protein
SIO_000068: ncbiprotein

position:8733353:-1
position: 8733353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8733913:-1
position: 8733913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8733353-8733913:-1:exon

Atp6ap2
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Atp6ap2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8765995..>8785753)
location: region:8765995-8785753:-1
so has part: feature:8765995-8785753:-1:exon
subclass of: SO_0000010

116888972
type: Gene
SIO_000068: ncbigene

position:8765995:-1
position: 8765995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8785753:-1
position: 8785753
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8765995-8785753:-1:exon

Atp6ap2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Atp6ap2
product: ATPase H+ transporting accessory protein 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 1 Protein, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890197.1
SIO_010081: Atp6ap2
subclass of: SO_0000673
so part of: Atp6ap2
location: complement(join(8765995..8767135,8773827..8773946,8775192..8775341,8776035..8776088,8777117..8777254,8777413..8777508,8784261..8784390,8785598..>8785753))
location: region:8765995-8785753:-1
so has part: feature:8785598-8785753:-1:exon
so has part: feature:8784261-8784390:-1:exon
so has part: feature:8777413-8777508:-1:exon
so has part: feature:8777117-8777254:-1:exon
so has part: feature:8776035-8776088:-1:exon
so has part: feature:8775192-8775341:-1:exon
so has part: feature:8773827-8773946:-1:exon
so has part: feature:8765995-8767135:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8785598-8785753:-1:exon

position:8785598:-1
position: 8785598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8784261-8784390:-1:exon

position:8784261:-1
position: 8784261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8784390:-1
position: 8784390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8777413-8777508:-1:exon

position:8777413:-1
position: 8777413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8777508:-1
position: 8777508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8777117-8777254:-1:exon

position:8777117:-1
position: 8777117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8777254:-1
position: 8777254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8776035-8776088:-1:exon

position:8776035:-1
position: 8776035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8776088:-1
position: 8776088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8775192-8775341:-1:exon

position:8775192:-1
position: 8775192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8775341:-1
position: 8775341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8773827-8773946:-1:exon

position:8773827:-1
position: 8773827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8773946:-1
position: 8773946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8765995-8767135:-1:exon

position:8767135:-1
position: 8767135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Atp6ap2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Atp6ap2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: renin receptor
translation: IYQSLFSLGALGNEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHXPMATIMVTVKGXDKLALPTGNVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGKANSVFEDLSVTLRQLRNRLFQENSVLNSLPLNSLSRNNEADLLFLSELQVLHDISSLLSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASRILVDALQKFADDMYSLYSGNAVVELVTVKSFDTSLVRKSRTILETKQENTQSPYNLAYKYNLEYSVVFNLVLWIMTGLALAVIITSYNIWNMDPGYDSIIYRMTNQKIRMD
SIO_010081: Atp6ap2
subclass of: SO_0000673
so part of: Atp6ap2
location: complement(join(8766944..8767135,8773827..8773946,8775192..8775341,8776035..8776088,8777117..8777254,8777413..8777508,8784261..8784390,8785598..>8785753))
location: region:8766944-8785753:-1
so has part: feature:8785598-8785753:-1:exon
so has part: feature:8784261-8784390:-1:exon
so has part: feature:8777413-8777508:-1:exon
so has part: feature:8777117-8777254:-1:exon
so has part: feature:8776035-8776088:-1:exon
so has part: feature:8775192-8775341:-1:exon
so has part: feature:8773827-8773946:-1:exon
so has part: feature:8766944-8767135:-1:exon

XP_032746088.1
type: Protein
SIO_000068: ncbiprotein

position:8766944:-1
position: 8766944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8785598-8785753:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8784261-8784390:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8777413-8777508:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8777117-8777254:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8776035-8776088:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8775192-8775341:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8773827-8773946:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8766944-8767135:-1:exon

LOC116888888
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888888
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8991903..9009771)
location: region:8991903-9009771:-1
so has part: feature:8991903-9009771:-1:exon
subclass of: SO_0000011

116888888
type: Gene
SIO_000068: ncbigene

position:8991903:-1
position: 8991903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9009771:-1
position: 9009771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8991903-9009771:-1:exon

LOC116888888
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888888
product: uncharacterized LOC116888888
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004386353.1
SIO_010081: LOC116888888
subclass of: SO_0000673
so part of: LOC116888888
location: complement(join(8991903..8992256,8992704..8992802,9009613..9009771))
location: region:8991903-9009771:-1
so has part: feature:9009613-9009771:-1:exon
so has part: feature:8992704-8992802:-1:exon
so has part: feature:8991903-8992256:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9009613-9009771:-1:exon

position:9009613:-1
position: 9009613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8992704-8992802:-1:exon

position:8992704:-1
position: 8992704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8992802:-1
position: 8992802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8991903-8992256:-1:exon

position:8992256:-1
position: 8992256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888974
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888974
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 9173441..9173865
location: region:9173441-9173865:1
so has part: feature:9173441-9173865:1:exon

116888974
type: Gene
SIO_000068: ncbigene

position:9173441:1
position: 9173441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9173865:1
position: 9173865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9173441-9173865:1:exon

LOC116888974
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888974
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC116888974
subclass of: SO_0000673
so part of: LOC116888974
location: 9173441..9173865
location: region:9173441-9173865:1
so has part: feature:9173441-9173865:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9173441-9173865:1:exon

Bcor
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Bcor
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9268340..9310619
location: region:9268340-9310619:1
so has part: feature:9268340-9310619:1:exon
subclass of: SO_0000010

116888483
type: Gene
SIO_000068: ncbigene

position:9268340:1
position: 9268340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9310619:1
position: 9310619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9268340-9310619:1:exon

Bcor
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Bcor
product: BCL6 corepressor
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_032889758.1
SIO_010081: Bcor
subclass of: SO_0000673
so part of: Bcor
location: join(9268340..9268859,9286377..9286502,9287821..9287899,9288754..9291594,9292289..9292342,9292823..9293009,9298515..9298772,9299120..9299467,9300028..9300353,9300649..9300901,9305926..9306092,9307016..9307161,9308120..9308197,9308381..9308537,9309453..9310619)
location: region:9268340-9310619:1
so has part: feature:9268340-9268859:1:exon
so has part: feature:9286377-9286502:1:exon
so has part: feature:9287821-9287899:1:exon
so has part: feature:9288754-9291594:1:exon
so has part: feature:9292289-9292342:1:exon
so has part: feature:9292823-9293009:1:exon
so has part: feature:9298515-9298772:1:exon
so has part: feature:9299120-9299467:1:exon
so has part: feature:9300028-9300353:1:exon
so has part: feature:9300649-9300901:1:exon
so has part: feature:9305926-9306092:1:exon
so has part: feature:9307016-9307161:1:exon
so has part: feature:9308120-9308197:1:exon
so has part: feature:9308381-9308537:1:exon
so has part: feature:9309453-9310619:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9268340-9268859:1:exon

position:9268859:1
position: 9268859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9286377-9286502:1:exon

position:9286377:1
position: 9286377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9286502:1
position: 9286502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9287821-9287899:1:exon

position:9287821:1
position: 9287821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9287899:1
position: 9287899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9288754-9291594:1:exon

position:9288754:1
position: 9288754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9291594:1
position: 9291594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9292289-9292342:1:exon

position:9292289:1
position: 9292289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9292342:1
position: 9292342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9292823-9293009:1:exon

position:9292823:1
position: 9292823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9293009:1
position: 9293009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9298515-9298772:1:exon

position:9298515:1
position: 9298515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9298772:1
position: 9298772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9299120-9299467:1:exon

position:9299120:1
position: 9299120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9299467:1
position: 9299467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9300028-9300353:1:exon

position:9300028:1
position: 9300028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9300353:1
position: 9300353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9300649-9300901:1:exon

position:9300649:1
position: 9300649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9300901:1
position: 9300901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:9305926-9306092:1:exon

position:9305926:1
position: 9305926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9306092:1
position: 9306092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:9307016-9307161:1:exon

position:9307016:1
position: 9307016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9307161:1
position: 9307161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:9308120-9308197:1:exon

position:9308120:1
position: 9308120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9308197:1
position: 9308197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:9308381-9308537:1:exon

position:9308381:1
position: 9308381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9308537:1
position: 9308537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:9309453-9310619:1:exon

position:9309453:1
position: 9309453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

Bcor
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Bcor
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:9300673..9300675,aa:OTHER)
product: LOW QUALITY PROTEIN: BCL-6 corepressor
translation: MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLELREENPLNHNVVDTSGAHRIDGLAALSMDRTGLIREGLRVPGNIVYSGLCGLGSEKGREATPSSLGGLGFSSERNPEMQFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAVATAESLGLDRPASDKQSTLNINGASYLRLPWVNPYMEGATPAIYPFLDHAKKYSLNMYKALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLVHCSDKSLPWKMGVNPGNPVDSHTYPHIQNSKQPRVTSAKAVNSGLPGDAALLLPPSPRPSTRVHLPTQPAAESYSEFHKHYPRISTSPSVTLTKPYMTASSEFPTARLSSGKYPKALDGGDCAPSMSGHSRKTTVQDRKDGGSPPLLEKQTVTKDVTDKPLDLSSKVVDVDTSKTDHMKKMAPTVVVHSRAASGLVLSGSEIPKETSPPGNGCSIYRSEIISTAPSSWVVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVITNVSGSVSSSGRPASASPAPNANADGTKTNRSSVDTTPSVIQHVGQPPSTPAKHSGSTSSKGAKASNPEPSFKASENGLPPTSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIALSPLSLHGKGPVYPHPVLLPNGSLFPGHLAPKPGLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEEKPERRSRSHERARYEDPTLRSRFSEILEASSAKLHPDVPTDKNLKPNPSWNQGKTGAKSDKLVYVDLLREETEAKADAGASKAGLVAENAGQNTDAAKPSADPVIQQHREFISLREELGRITDFHESFTFKQAPGQPVFSLGKDSVAAGSNKENLGVQVATPFLETALGSEGPAVTFGKTQEDPKPFCVGGAPPSMDVTPAYTKDGTDEAESNDGKVLKPKPSKLAKRIANSAGYVGDRFKCVTTELYADSSQLSREQRALQMEGLQEDSILCLPAAYCERAMMRFSELEMKEREGSHPATKDSEVCKFSPADWERLKGNQEKKPKSVALEEAIADQNDTERCDYSTGNKHDLFEAPEDKDLPVEKYFLERPPVSEPPTDQGVVDMSHSPTLRLDRKRKASGDSTHTETTVEELTEDPLKAKRRRISKDDWPEREMTNSSSNHLEDPHCNELTNLKVCIELTGLHPKKQRHLLHLRERWEQQVSAAAESKPGRQSRKEVTQAVQPEVTSQGNNITEERPGRKKAEAKGNRGWSEESLKSCDNEQGLPVFSASPPMKSLSSTNASGKKQTQPSCTPASRPPAKQQKIKESQKTDVLCTEEDEDCRAASPLQKYTDNIEKPSGKRLCKTKHLIPQDSRRSVQITGEYYVENTDTKMTVGDSENXPSRSPDYDLSPPAKQEPKPLXRLQQLLPPPRPQLPRSNSPQETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQGRSEEDTSGAWEFYGSSVCEPDDESGYDVLANPPGPEDPDEEEDAYSDMFEFEFAESSLLPCYNIQVSVAQGPRNWLLLSDVLKKLKMSSRIFRCNFPNMEIVSIAEAEFYRQVSTSLIFSCPKDLEAFNPEGKELLDLVEFTNELQTLLGSSVEWLHPSDTGHENYW
SIO_010081: Bcor
subclass of: SO_0000673
so part of: Bcor
location: join(9286417..9286502,9287821..9287899,9288754..9291594,9292289..9292342,9292823..9293009,9298515..9298772,9299120..9299467,9300028..9300353,9300649..9300901,9305926..9306092,9307016..9307161,9308120..9308197,9308381..9308537,9309453..9309744)
location: region:9286417-9309744:1
so has part: feature:9286417-9286502:1:exon
so has part: feature:9287821-9287899:1:exon
so has part: feature:9288754-9291594:1:exon
so has part: feature:9292289-9292342:1:exon
so has part: feature:9292823-9293009:1:exon
so has part: feature:9298515-9298772:1:exon
so has part: feature:9299120-9299467:1:exon
so has part: feature:9300028-9300353:1:exon
so has part: feature:9300649-9300901:1:exon
so has part: feature:9305926-9306092:1:exon
so has part: feature:9307016-9307161:1:exon
so has part: feature:9308120-9308197:1:exon
so has part: feature:9308381-9308537:1:exon
so has part: feature:9309453-9309744:1:exon

XP_032745649.1
type: Protein
SIO_000068: ncbiprotein

position:9286417:1
position: 9286417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9309744:1
position: 9309744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9286417-9286502:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9287821-9287899:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9288754-9291594:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9292289-9292342:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9292823-9293009:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9298515-9298772:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9299120-9299467:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9300028-9300353:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9300649-9300901:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9305926-9306092:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9307016-9307161:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9308120-9308197:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:9308381-9308537:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:9309453-9309744:1:exon

LOC116889578
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889578
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 9372047..9372153
location: region:9372047-9372153:1
so has part: feature:9372047-9372153:1:exon
subclass of: SO_0000623

116889578
type: Gene
SIO_000068: ncbigene

position:9372047:1
position: 9372047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9372153:1
position: 9372153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9372047-9372153:1:exon

LOC116889578
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: snRNA
gene: LOC116889578
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004386494.1
SIO_010081: LOC116889578
subclass of: SO_0000673
so part of: LOC116889578
location: 9372047..9372153
location: region:9372047-9372153:1
so has part: feature:9372047-9372153:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9372047-9372153:1:exon

LOC116889427
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889427
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(9506166..9506270)
location: region:9506166-9506270:-1
so has part: feature:9506166-9506270:-1:exon
subclass of: SO_0000623

116889427
type: Gene
SIO_000068: ncbigene

position:9506166:-1
position: 9506166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9506270:-1
position: 9506270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9506166-9506270:-1:exon

LOC116889427
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: snRNA
gene: LOC116889427
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004386392.1
SIO_010081: LOC116889427
subclass of: SO_0000673
so part of: LOC116889427
location: complement(9506166..9506270)
location: region:9506166-9506270:-1
so has part: feature:9506166-9506270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9506166-9506270:-1:exon

LOC116888257
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888257
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(10068240..10069300)
location: region:10068240-10069300:-1
so has part: feature:10068240-10069300:-1:exon

116888257
type: Gene
SIO_000068: ncbigene

position:10068240:-1
position: 10068240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10069300:-1
position: 10069300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10068240-10069300:-1:exon

LOC116888257
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888257
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888257
subclass of: SO_0000673
so part of: LOC116888257
location: complement(10068240..10069300)
location: region:10068240-10069300:-1
so has part: feature:10068240-10069300:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10068240-10069300:-1:exon

LOC116888981
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888981
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10178742..10215100)
location: region:10178742-10215100:-1
so has part: feature:10178742-10215100:-1:exon
subclass of: SO_0000011

116888981
type: Gene
SIO_000068: ncbigene

position:10178742:-1
position: 10178742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10215100:-1
position: 10215100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10178742-10215100:-1:exon

LOC116888981
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888981
product: uncharacterized LOC116888981
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004386357.1
SIO_010081: LOC116888981
subclass of: SO_0000673
so part of: LOC116888981
location: complement(join(10178742..10178866,10179436..10179469,10214971..10215100))
location: region:10178742-10215100:-1
so has part: feature:10214971-10215100:-1:exon
so has part: feature:10179436-10179469:-1:exon
so has part: feature:10178742-10178866:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10214971-10215100:-1:exon

position:10214971:-1
position: 10214971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10179436-10179469:-1:exon

position:10179436:-1
position: 10179436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10179469:-1
position: 10179469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10178742-10178866:-1:exon

position:10178866:-1
position: 10178866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116888982
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888982
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10215381..10224654)
location: region:10215381-10224654:-1
so has part: feature:10215381-10224654:-1:exon
subclass of: SO_0000011

116888982
type: Gene
SIO_000068: ncbigene

position:10215381:-1
position: 10215381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10224654:-1
position: 10224654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10215381-10224654:-1:exon

LOC116888982
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 10117
nc RNA class: lncRNA
gene: LOC116888982
product: uncharacterized LOC116888982
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004386358.1
SIO_010081: LOC116888982
subclass of: SO_0000673
so part of: LOC116888982
location: complement(join(10215381..10215525,10220111..10220169,10224460..10224654))
location: region:10215381-10224654:-1
so has part: feature:10224460-10224654:-1:exon
so has part: feature:10220111-10220169:-1:exon
so has part: feature:10215381-10215525:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10224460-10224654:-1:exon

position:10224460:-1
position: 10224460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10220111-10220169:-1:exon

position:10220111:-1
position: 10220111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10220169:-1
position: 10220169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10215381-10215525:-1:exon

position:10215525:-1
position: 10215525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Mid1ip1
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Mid1ip1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10323965..10325554
location: region:10323965-10325554:1
so has part: feature:10323965-10325554:1:exon
subclass of: SO_0000010

116888848
type: Gene
SIO_000068: ncbigene

position:10323965:1
position: 10323965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10325554:1
position: 10325554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10323965-10325554:1:exon

Mid1ip1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Mid1ip1
product: MID1 interacting protein 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 ESTs, 7 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890116.1
SIO_010081: Mid1ip1
subclass of: SO_0000673
so part of: Mid1ip1
location: 10323965..10325554
location: region:10323965-10325554:1
so has part: feature:10323965-10325554:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10323965-10325554:1:exon

Mid1ip1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Mid1ip1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: mid1-interacting protein 1
translation: MMQICDTYNQKHSLFNAMNRFIGAVNNXDQTVMVPSLLRDVPLSEPDLDNEVSVEVGGSGSCLEERTTPAPSPGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPSPPPAGSEEGTWKPKDILVGLSHLESTDAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFSNWGH
SIO_010081: Mid1ip1
subclass of: SO_0000673
so part of: Mid1ip1
location: 10324079..10324630
location: region:10324079-10324630:1
so has part: feature:10324079-10324630:1:exon

XP_032746007.1
type: Protein
SIO_000068: ncbiprotein

position:10324079:1
position: 10324079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10324630:1
position: 10324630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10324079-10324630:1:exon

LOC116888976
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888976
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(10625422..10629924)
location: region:10625422-10629924:-1
so has part: feature:10625422-10629924:-1:exon

116888976
type: Gene
SIO_000068: ncbigene

position:10625422:-1
position: 10625422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10629924:-1
position: 10629924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10625422-10629924:-1:exon

LOC116888976
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888976
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
pseudo: true
SIO_010081: LOC116888976
subclass of: SO_0000673
so part of: LOC116888976
location: complement(10625422..10625958)
location: region:10625422-10625958:-1
so has part: feature:10625422-10625958:-1:exon

position:10625958:-1
position: 10625958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10625422-10625958:-1:exon

LOC116888976
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888976
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
pseudo: true
SIO_010081: LOC116888976
subclass of: SO_0000673
so part of: LOC116888976
location: complement(10629803..10629924)
location: region:10629803-10629924:-1
so has part: feature:10629803-10629924:-1:exon

position:10629803:-1
position: 10629803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10629803-10629924:-1:exon

Tspan7
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Tspan7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10683062..10783747)
location: region:10683062-10783747:-1
so has part: feature:10683062-10783747:-1:exon
subclass of: SO_0000010

116889214
type: Gene
SIO_000068: ncbigene

position:10683062:-1
position: 10683062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10783747:-1
position: 10783747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10683062-10783747:-1:exon

Tspan7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Tspan7
product: tetraspanin 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 82 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_032890365.1
SIO_010081: Tspan7
subclass of: SO_0000673
so part of: Tspan7
location: complement(join(10683062..10684023,10684295..10684370,10688971..10689054,10694501..10694656,10696830..10696925,10698770..10698844,10700325..10700513,10783622..10783747))
location: region:10683062-10783747:-1
so has part: feature:10783622-10783747:-1:exon
so has part: feature:10700325-10700513:-1:exon
so has part: feature:10698770-10698844:-1:exon
so has part: feature:10696830-10696925:-1:exon
so has part: feature:10694501-10694656:-1:exon
so has part: feature:10688971-10689054:-1:exon
so has part: feature:10684295-10684370:-1:exon
so has part: feature:10683062-10684023:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10783622-10783747:-1:exon

position:10783622:-1
position: 10783622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10700325-10700513:-1:exon

position:10700325:-1
position: 10700325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10700513:-1
position: 10700513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10698770-10698844:-1:exon

position:10698770:-1
position: 10698770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10698844:-1
position: 10698844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10696830-10696925:-1:exon

position:10696830:-1
position: 10696830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10696925:-1
position: 10696925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10694501-10694656:-1:exon

position:10694501:-1
position: 10694501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10694656:-1
position: 10694656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10688971-10689054:-1:exon

position:10688971:-1
position: 10688971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10689054:-1
position: 10689054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10684295-10684370:-1:exon

position:10684295:-1
position: 10684295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10684370:-1
position: 10684370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10683062-10684023:-1:exon

position:10684023:-1
position: 10684023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

Tspan7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: Tspan7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetraspanin-7
translation: MASRRMETKPVITCLKTLLIIYSFVFWITGAILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGKDERSRAVDHVQRSLSCCGVQNYTNWSSSPYFLEHGIPPSCCMNETDCNPLDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV
SIO_010081: Tspan7
subclass of: SO_0000673
so part of: Tspan7
location: complement(join(10684302..10684370,10688971..10689054,10694501..10694656,10696830..10696925,10698770..10698844,10700325..10700513,10783622..10783702))
location: region:10684302-10783702:-1
so has part: feature:10783622-10783702:-1:exon
so has part: feature:10700325-10700513:-1:exon
so has part: feature:10698770-10698844:-1:exon
so has part: feature:10696830-10696925:-1:exon
so has part: feature:10694501-10694656:-1:exon
so has part: feature:10688971-10689054:-1:exon
so has part: feature:10684302-10684370:-1:exon

XP_032746256.1
type: Protein
SIO_000068: ncbiprotein

position:10684302:-1
position: 10684302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10783702:-1
position: 10783702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10783622-10783702:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10700325-10700513:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10698770-10698844:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10696830-10696925:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10694501-10694656:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10688971-10689054:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10684302-10684370:-1:exon

LOC116888908
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888908
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 10737109..10759079
location: region:10737109-10759079:1
so has part: feature:10737109-10759079:1:exon

116888908
type: Gene
SIO_000068: ncbigene

position:10737109:1
position: 10737109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10759079:1
position: 10759079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10737109-10759079:1:exon

LOC116888908
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888908
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888908
subclass of: SO_0000673
so part of: LOC116888908
location: 10737109..10737175
location: region:10737109-10737175:1
so has part: feature:10737109-10737175:1:exon

position:10737175:1
position: 10737175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10737109-10737175:1:exon

LOC116888908
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888908
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888908
subclass of: SO_0000673
so part of: LOC116888908
location: 10757669..10759079
location: region:10757669-10759079:1
so has part: feature:10757669-10759079:1:exon

position:10757669:1
position: 10757669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10757669-10759079:1:exon

LOC116889226
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116889226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10847494..10848964
location: region:10847494-10848964:1
so has part: feature:10847494-10848964:1:exon
subclass of: SO_0000010

116889226
type: Gene
SIO_000068: ncbigene

position:10847494:1
position: 10847494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10848964:1
position: 10848964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10847494-10848964:1:exon

LOC116889226
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: LOC116889226
product: ferritin light chain-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032890378.1
SIO_010081: LOC116889226
subclass of: SO_0000673
so part of: LOC116889226
location: 10847494..10848964
location: region:10847494-10848964:1
so has part: feature:10847494-10848964:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10847494-10848964:1:exon

LOC116889226
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10117
gene: LOC116889226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ferritin light chain-like
translation: MSAWSHQNYTTEVEATIDRLINMHLEASDRYLSLGFVFKDDSSVAGLVHFFRDLSEEKRQAAYLLLMQTRQSDYGHFSNGPTVPSYQCDGSLDAMETTLALEKNLNQVLLDLHALGSSNGDFQLCHFLEKHFLEKEMNLIKKISDYLTSLRQQVNEEESLSECLLKRLTLNSD
SIO_010081: LOC116889226
subclass of: SO_0000673
so part of: LOC116889226
location: 10847575..10848096
location: region:10847575-10848096:1
so has part: feature:10847575-10848096:1:exon

XP_032746269.1
type: Protein
SIO_000068: ncbiprotein

position:10847575:1
position: 10847575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10848096:1
position: 10848096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10847575-10848096:1:exon

LOC116888977
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: LOC116888977
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 10890564..10929347
location: region:10890564-10929347:1
so has part: feature:10890564-10929347:1:exon

116888977
type: Gene
SIO_000068: ncbigene

position:10890564:1
position: 10890564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10929347:1
position: 10929347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10890564-10929347:1:exon

LOC116888977
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888977
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888977
subclass of: SO_0000673
so part of: LOC116888977
location: 10890564..10890674
location: region:10890564-10890674:1
so has part: feature:10890564-10890674:1:exon

position:10890674:1
position: 10890674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10890564-10890674:1:exon

LOC116888977
type: Exon
subclass of: SO_0000147
RO_0002162: 10117
gene: LOC116888977
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116888977
subclass of: SO_0000673
so part of: LOC116888977
location: 10928778..10929347
location: region:10928778-10929347:1
so has part: feature:10928778-10929347:1:exon

position:10928778:1
position: 10928778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10928778-10929347:1:exon

Otc
type: Gene
subclass of: SO_0000704
RO_0002162: 10117
gene: Otc
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(10932257..11012170)
location: region:10932257-11012170:-1
so has part: feature:10932257-11012170:-1:exon
subclass of: SO_0000010

116888595
type: Gene
SIO_000068: ncbigene

position:10932257:-1
position: 10932257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11012170:-1
position: 11012170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10932257-11012170:-1:exon

Otc
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 10117
gene: Otc
product: ornithine carbamoyltransferase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 11 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_032889894.1
SIO_010081: Otc
subclass of: SO_0000673
so part of: Otc
location: complement(join(10932257..10932718,10939129..10939266,10942168..10942317,10942404..10942457,10947978..10948100,10950795..10950948,10981543..10981630,10997299..10997380,10999131..10999259,11005071..11005080,11012054..11012170))
location: region:10932257-11012170:-1
so has part: feature:11012054-11012170:-1:exon
so has part: feature:11005071-11005080:-1:exon
so has part: feature:10999131-10999259:-1:exon
so has part: feature:10997299-10997380:-1:exon
so has part: feature:10981543-10981630:-1:exon
so has part: feature:10950795-10950948:-1:exon
so has part: feature:10947978-10948100:-1:exon
so has part: feature:10942404-10942457:-1:exon
so has part: feature:10942168-10942317:-1:exon
so has part: feature:10939129-10939266:-1:exon
so has part: feature:10932257-10932718:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11012054-11012170:-1:exon

position:11012054:-1
position: 11012054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11005071-11005080:-1:exon