Rattus norvegicus strain BN/SsNHsdMCW mitochondrion, complete genome.
type: Entry
definition: Rattus norvegicus strain BN/SsNHsdMCW mitochondrion, complete genome.
sequence version: NC_001665.2
sequence date: 2023-04-03
sequence: sequence
division: ROD
label: NC_001665.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Rattus norvegicus (Norway rat)
organism: Rattus norvegicus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from AY172581.\n\nOn Jul 6, 2006 this sequence version replaced NC_001665.1.\nSequence Note: NC_001665.2 represents the reference sequence for\nthe rat mitochondrial genome. In July 2006 the underlying sequence\nwas updated to represent the Brown Norway strain based on the\nrecommendation of the Rat Genome Sequencing Consortium that\nBN/SsNHsdMCW should be the reference sequence. In conjunction with\nthis update, an alternate accession AC_000022.2 was updated to\ncontinue to represent the the Wistar strain sequence that was\npreviously considered to be the reference standard.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16313
topology: circular
so has quality: SO_0000988
location: 1..16313
location: region:1-16313:1
RO_0002162: 10116

NC_001665
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The Mitochondrial Genome of Rattus norvegicus strain Brown Norway
author: McLeod, M.P.
author: Muzny, D.M.
author: Metzker, M.L.
author: Abramzon, S.
author: Adams, C.
author: Alder, J.
author: Allen, C.
author: Allen, H.
author: Alsbrooks, S.
author: Amin, A.
author: Anguiano, D.
author: Anyalebechi, V.
author: Aoyagi, A.
author: Ayodeji, M.
author: Baca, E.
author: Baden, H.
author: Baldwin, D.
author: Bandaranaike, D.
author: Barber, M.
author: Barnstead, M.
author: Benahmed, F.
author: Biswalo, K.
author: Blair, J.
author: Blankenburg, K.
author: Blyth, P.
author: Brown, M.
author: Bryant, N.
author: Buhay, C.
author: Burch, P.
author: Burrell, K.
author: Calderon, E.
author: Cardenas, V.
author: Carter, K.
author: Cavazos, I.
author: Ceasar, H.
author: Center, A.
author: Chacko, J.
author: Chavez, D.
author: Chen, G.
author: Chen, R.
author: Chen, Y.
author: Chen, Z.
author: Chu, J.
author: Cleveland, C.
author: Cockrell, R.
author: Cox, C.
author: Coyle, M.
author: Cree, A.
author: D'Souza, L.
author: Davila, M.L.
author: Davis, C.
author: Davy-Carroll, L.
author: De Anda, C.
author: Dederich, D.
author: Delgado, O.
author: Denson, S.
author: Deramo, C.
author: Ding, Y.
author: Dinh, H.
author: Divya, K.
author: Draper, H.
author: Dugan-Rocha, S.
author: Dunn, A.
author: Durbin, K.
author: Duval, B.
author: Eaves, K.
author: Egan, A.
author: Escotto, M.
author: Eugene, C.
author: Evans, C.A.
author: Falls, T.
author: Fan, G.
author: Fernandez, S.
author: Finley, M.
author: Flagg, N.
author: Forbes, L.
author: Foster, M.
author: Foster, P.

2
title: Direct Submission
journal: Submitted (06-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
journal: Submitted (04-NOV-2002) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16313:1
position: 16313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16313:1:source
so part of: sequence
organism: Rattus norvegicus
organelle: mitochondrion
mol type: genomic DNA
strain: BN/SsNHsdMCW

10116
type: Taxonomy
SIO_000068: taxonomy

Trnf
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tf
gene: Trnf
gene synonym: mt-Tf
so part of: sequence
location: 1..67
location: region:1-67:1
so has part: feature:1-67:1:exon
subclass of: SO_0000663

170599
type: Gene
SIO_000068: ncbigene

position:67:1
position: 67
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-67:1:exon

Trnf
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tf
gene: Trnf
gene synonym: mt-Tf
product: tRNA-Phe
SIO_010081: Trnf
subclass of: SO_0000673
so part of: Trnf
location: 1..67
location: region:1-67:1
so has part: feature:1-67:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-67:1:exon

mt-Rnr1
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: mt-Rnr1
so part of: sequence
location: 68..1025
location: region:68-1025:1
so has part: feature:68-1025:1:exon
subclass of: SO_0000573

170602
type: Gene
SIO_000068: ncbigene

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1025:1
position: 1025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68-1025:1:exon

mt-Rnr1
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 10116
gene: mt-Rnr1
product: s-rRNA
note: 12S ribosomal RNA
SIO_010081: mt-Rnr1
subclass of: SO_0000673
so part of: mt-Rnr1
location: 68..1025
location: region:68-1025:1
so has part: feature:68-1025:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68-1025:1:exon

Trnv
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tv
gene: Trnv
gene synonym: mt-Tv
so part of: sequence
location: 1026..1093
location: region:1026-1093:1
so has part: feature:1026-1093:1:exon
subclass of: SO_0000663

170601
type: Gene
SIO_000068: ncbigene

position:1026:1
position: 1026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1026-1093:1:exon

Trnv
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tv
gene: Trnv
gene synonym: mt-Tv
product: tRNA-Val
SIO_010081: Trnv
subclass of: SO_0000673
so part of: Trnv
location: 1026..1093
location: region:1026-1093:1
so has part: feature:1026-1093:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1026-1093:1:exon

mt-Rnr2
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: mt-Rnr2
so part of: sequence
location: 1094..2664
location: region:1094-2664:1
so has part: feature:1094-2664:1:exon
subclass of: SO_0000573

170603
type: Gene
SIO_000068: ncbigene

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2664:1
position: 2664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2664:1:exon

mt-Rnr2
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 10116
gene: mt-Rnr2
product: l-rRNA
note: 16S ribosomal RNA
SIO_010081: mt-Rnr2
subclass of: SO_0000673
so part of: mt-Rnr2
location: 1094..2664
location: region:1094-2664:1
so has part: feature:1094-2664:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2664:1:exon

Trnl1
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tl1
gene: Trnl1
gene synonym: mt-Tl1
so part of: sequence
location: 2665..2739
location: region:2665-2739:1
so has part: feature:2665-2739:1:exon
subclass of: SO_0000663

170604
type: Gene
SIO_000068: ncbigene

position:2665:1
position: 2665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2739:1
position: 2739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2665-2739:1:exon

Trnl1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tl1
gene: Trnl1
gene synonym: mt-Tl1
product: tRNA-Leu
codon recognized: UUR
SIO_010081: Trnl1
subclass of: SO_0000673
so part of: Trnl1
location: 2665..2739
location: region:2665-2739:1
so has part: feature:2665-2739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2665-2739:1:exon

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND1
nomenclature: Official Symbol: mt-Nd1 | Name: NADH dehydrogenase 1, mitochondrial | Provided by: RGD:620555
note: Nd1; NADH1
so part of: sequence
location: 2740..3694
location: region:2740-3694:1
so has part: feature:2740-3694:1:exon
subclass of: SO_0000010

26193
type: Gene
SIO_000068: ncbigene

620555
type: RGD
SIO_000068: rgd

position:2740:1
position: 2740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3694:1
position: 3694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2740-3694:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3694,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MYFINILTLLIPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSMSLFIIAPTLSLTLALSLWIPLPMPHPLINLNLGMLFILATSSLSVYSILWSGWASNSKYSLFGALRAVAQTISYEVTMAIILLSVLLMSGSFSLQMLITTQEHIWLLIPAWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALTSIVFLGPLYHINYPELYSTSFMTETLLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFLAGIPPYT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2740..3694
location: region:2740-3694:1
so has part: feature:2740-3694:1:exon

YP_665629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2740-3694:1:exon

Trni
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Ti
gene: Trni
gene synonym: mt-Ti
so part of: sequence
location: 3695..3763
location: region:3695-3763:1
so has part: feature:3695-3763:1:exon
subclass of: SO_0000663

170605
type: Gene
SIO_000068: ncbigene

position:3695:1
position: 3695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3763:1
position: 3763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3695-3763:1:exon

Trni
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Ti
gene: Trni
gene synonym: mt-Ti
product: tRNA-Ile
SIO_010081: Trni
subclass of: SO_0000673
so part of: Trni
location: 3695..3763
location: region:3695-3763:1
so has part: feature:3695-3763:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3695-3763:1:exon

Trnq
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tq
gene: Trnq
gene synonym: mt-Tq
so part of: sequence
location: complement(3761..3831)
location: region:3761-3831:-1
so has part: feature:3761-3831:-1:exon
subclass of: SO_0000663

170606
type: Gene
SIO_000068: ncbigene

position:3761:-1
position: 3761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3831:-1
position: 3831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3761-3831:-1:exon

Trnq
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tq
gene: Trnq
gene synonym: mt-Tq
product: tRNA-Gln
SIO_010081: Trnq
subclass of: SO_0000673
so part of: Trnq
location: complement(3761..3831)
location: region:3761-3831:-1
so has part: feature:3761-3831:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3761-3831:-1:exon

Trnm
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tm
gene: Trnm
gene synonym: mt-Tm
so part of: sequence
location: 3835..3903
location: region:3835-3903:1
so has part: feature:3835-3903:1:exon
subclass of: SO_0000663

170607
type: Gene
SIO_000068: ncbigene

position:3835:1
position: 3835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3903:1
position: 3903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3835-3903:1:exon

Trnm
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tm
gene: Trnm
gene synonym: mt-Tm
product: tRNA-Met
SIO_010081: Trnm
subclass of: SO_0000673
so part of: Trnm
location: 3835..3903
location: region:3835-3903:1
so has part: feature:3835-3903:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3835-3903:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND2
nomenclature: Official Symbol: mt-Nd2 | Name: NADH dehydrogenase 2, mitochondrial | Provided by: RGD:620556
note: Nd2; NADH2
so part of: sequence
location: 3904..4942
location: region:3904-4942:1
so has part: feature:3904-4942:1:exon
subclass of: SO_0000010

26194
type: Gene
SIO_000068: ncbigene

620556
type: RGD
SIO_000068: rgd

position:3904:1
position: 3904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4942:1
position: 4942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3904-4942:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4942,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPITLIIIYFTILMGPVITMSSSNLLLMWVGLEMSLLAIIPLLANKKSPRSTEAATKYFLTQATASMIILLVIILNYKQSGMWTLQQQTNNMLLNMMLISLAMKLGLAPFHYWLPEVTQGIPLHIGLILLTWQKIAPLSILYQFYQLLNPTITTILAISSVFVGAWGGLNQTQTRKIMAYSSIAHMGWMTAILPYNPNLTLLNLTIYILLTVPMFITLMTNSATTINTLSLAWNKTPMILTMTSIILLSLGGLPPLTGFLPKWAIISELLKNNCSTLSTLMAIMALLSLFFYTRLIYSMSLTMFPTNNNSKMISHHHQNPKHNFILPTLTVLSTLTLPLSSQLIT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3904..4942
location: region:3904-4942:1
so has part: feature:3904-4942:1:exon

YP_665630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3904-4942:1:exon

Trnw
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tw
gene: Trnw
gene synonym: mt-Tw
so part of: sequence
location: 4943..5008
location: region:4943-5008:1
so has part: feature:4943-5008:1:exon
subclass of: SO_0000663

170608
type: Gene
SIO_000068: ncbigene

position:4943:1
position: 4943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5008:1
position: 5008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4943-5008:1:exon

Trnw
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tw
gene: Trnw
gene synonym: mt-Tw
product: tRNA-Trp
SIO_010081: Trnw
subclass of: SO_0000673
so part of: Trnw
location: 4943..5008
location: region:4943-5008:1
so has part: feature:4943-5008:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4943-5008:1:exon

Trna
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Ta
gene: Trna
gene synonym: mt-Ta
so part of: sequence
location: complement(5010..5078)
location: region:5010-5078:-1
so has part: feature:5010-5078:-1:exon
subclass of: SO_0000663

170609
type: Gene
SIO_000068: ncbigene

position:5010:-1
position: 5010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5078:-1
position: 5078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5010-5078:-1:exon

Trna
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Ta
gene: Trna
gene synonym: mt-Ta
product: tRNA-Ala
SIO_010081: Trna
subclass of: SO_0000673
so part of: Trna
location: complement(5010..5078)
location: region:5010-5078:-1
so has part: feature:5010-5078:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5010-5078:-1:exon

Trnn
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tn
gene: Trnn
gene synonym: mt-Tn
so part of: sequence
location: complement(5081..5152)
location: region:5081-5152:-1
so has part: feature:5081-5152:-1:exon
subclass of: SO_0000663

170610
type: Gene
SIO_000068: ncbigene

position:5081:-1
position: 5081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5152:-1
position: 5152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5081-5152:-1:exon

Trnn
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tn
gene: Trnn
gene synonym: mt-Tn
product: tRNA-Asn
SIO_010081: Trnn
subclass of: SO_0000673
so part of: Trnn
location: complement(5081..5152)
location: region:5081-5152:-1
so has part: feature:5081-5152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5081-5152:-1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 10116
direction: right
so part of: sequence
location: 5153..5184
location: region:5153-5184:1
so has part: feature:5153-5184:1:region

position:5153:1
position: 5153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5184:1
position: 5184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5153-5184:1:region

Trnc
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tc
gene: Trnc
gene synonym: mt-Tc
so part of: sequence
location: complement(5185..5252)
location: region:5185-5252:-1
so has part: feature:5185-5252:-1:exon
subclass of: SO_0000663

170611
type: Gene
SIO_000068: ncbigene

position:5185:-1
position: 5185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5252:-1
position: 5252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5185-5252:-1:exon

Trnc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tc
gene: Trnc
gene synonym: mt-Tc
product: tRNA-Cys
SIO_010081: Trnc
subclass of: SO_0000673
so part of: Trnc
location: complement(5185..5252)
location: region:5185-5252:-1
so has part: feature:5185-5252:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5185-5252:-1:exon

Trny
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Ty
gene: Trny
gene synonym: mt-Ty
so part of: sequence
location: complement(5256..5321)
location: region:5256-5321:-1
so has part: feature:5256-5321:-1:exon
subclass of: SO_0000663

170612
type: Gene
SIO_000068: ncbigene

position:5256:-1
position: 5256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5321:-1
position: 5321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5321:-1:exon

Trny
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Ty
gene: Trny
gene synonym: mt-Ty
product: tRNA-Tyr
SIO_010081: Trny
subclass of: SO_0000673
so part of: Trny
location: complement(5256..5321)
location: region:5256-5321:-1
so has part: feature:5256-5321:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5321:-1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: COI
gene: COX1
gene synonym: COI
nomenclature: Official Symbol: mt-Co1 | Name: cytochrome c oxidase I, mitochondrial | Provided by: RGD:621871
note: Co1; Cox1
so part of: sequence
location: 5323..6867
location: region:5323-6867:1
so has part: feature:5323-6867:1:exon
subclass of: SO_0000010

26195
type: Gene
SIO_000068: ncbigene

621871
type: RGD
SIO_000068: rgd

position:5323:1
position: 5323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6867:1
position: 6867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5323-6867:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
alternative label: COI
gene: COX1
gene synonym: COI
note: cytochrome c oxidase subunit 1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MLVNRWLFSTNHKDIGTLYLLFGAWAGMVGTALSILIRAELGQPGALLGDDQIYNVIVTAHAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGYTLNDTWAKAHFAIMFVGVNMTFFPQHFLGLAGMPRRYSDYPDAYTTWNTVSSMGSFISLTAVLVMIFMIWEAFASKREVLSISYSSTNLEWLHGCPPPYHTFEEPSYVKVK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5323..6867
location: region:5323-6867:1
so has part: feature:5323-6867:1:exon

YP_665631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5323-6867:1:exon

Trns1
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Ts1
gene: Trns1
gene synonym: mt-Ts1
so part of: sequence
location: complement(6865..6933)
location: region:6865-6933:-1
so has part: feature:6865-6933:-1:exon
subclass of: SO_0000663

170613
type: Gene
SIO_000068: ncbigene

position:6865:-1
position: 6865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6933:-1
position: 6933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6865-6933:-1:exon

Trns1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Ts1
gene: Trns1
gene synonym: mt-Ts1
product: tRNA-Ser
codon recognized: UCN
SIO_010081: Trns1
subclass of: SO_0000673
so part of: Trns1
location: complement(6865..6933)
location: region:6865-6933:-1
so has part: feature:6865-6933:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6865-6933:-1:exon

Trnd
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Td
gene: Trnd
gene synonym: mt-Td
so part of: sequence
location: 6937..7004
location: region:6937-7004:1
so has part: feature:6937-7004:1:exon
subclass of: SO_0000663

170614
type: Gene
SIO_000068: ncbigene

position:6937:1
position: 6937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7004:1
position: 7004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6937-7004:1:exon

Trnd
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Td
gene: Trnd
gene synonym: mt-Td
product: tRNA-Asp
SIO_010081: Trnd
subclass of: SO_0000673
so part of: Trnd
location: 6937..7004
location: region:6937-7004:1
so has part: feature:6937-7004:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6937-7004:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: COII
gene: COX2
gene synonym: COII
nomenclature: Official Symbol: mt-Co2 | Name: cytochrome c oxidase II, mitochondrial | Provided by: RGD:621872
note: COXII; Cox2; co2; COII
so part of: sequence
location: 7006..7689
location: region:7006-7689:1
so has part: feature:7006-7689:1:exon
subclass of: SO_0000010

26198
type: Gene
SIO_000068: ncbigene

621872
type: RGD
SIO_000068: rgd

position:7006:1
position: 7006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7689:1
position: 7689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7006-7689:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
alternative label: COII
gene: COX2
gene synonym: COII
note: cytochrome c oxidase subunit 2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAYPFQLGLQDATSPIMEELTNFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAVILILIALPSLRILYMMDEINNPVLTVKTMGHQWYWSYEYTDYEDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFMPIVLEMVPLKYFENWSASMI
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7006..7689
location: region:7006-7689:1
so has part: feature:7006-7689:1:exon

YP_665632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7006-7689:1:exon

Trnk
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tk
gene: Trnk
gene synonym: mt-Tk
so part of: sequence
location: 7693..7756
location: region:7693-7756:1
so has part: feature:7693-7756:1:exon
subclass of: SO_0000663

170615
type: Gene
SIO_000068: ncbigene

position:7693:1
position: 7693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7756:1
position: 7756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7693-7756:1:exon

Trnk
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tk
gene: Trnk
gene synonym: mt-Tk
product: tRNA-Lys
SIO_010081: Trnk
subclass of: SO_0000673
so part of: Trnk
location: 7693..7756
location: region:7693-7756:1
so has part: feature:7693-7756:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7693-7756:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ATP8
nomenclature: Official Symbol: mt-Atp8 | Name: ATP synthase 8, mitochondrial | Provided by: RGD:621240
note: ATPase8
so part of: sequence
location: 7758..7961
location: region:7758-7961:1
so has part: feature:7758-7961:1:exon
subclass of: SO_0000010

26196
type: Gene
SIO_000068: ncbigene

621240
type: RGD
SIO_000068: rgd

position:7758:1
position: 7758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7961:1
position: 7961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7758-7961:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ATP8
note: ATPase subunit 8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLDTSTWFITIISSMATLFILFQLKISSQTFPAPPSPKTMATEKTNNPWESKWTKTYLPLSLPPQ
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7758..7961
location: region:7758-7961:1
so has part: feature:7758-7961:1:exon

YP_665633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7758-7961:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ATP6
nomenclature: Official Symbol: mt-Atp6 | Name: ATP synthase 6, mitochondrial | Provided by: RGD:621239
so part of: sequence
location: 7919..8599
location: region:7919-8599:1
so has part: feature:7919-8599:1:exon
subclass of: SO_0000010

26197
type: Gene
SIO_000068: ncbigene

621239
type: RGD
SIO_000068: rgd

position:7919:1
position: 7919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8599:1
position: 8599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7919-8599:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ATP6
note: ATPase subunit 6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNENLFASFITPTMMGLPIVVTIIMFPSILFPSSERLISNRLHSFQHWLIKLIIKQMMLIHTPKGRTWALMIVSLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVILGFRHKLKNSLAHFLPQGTPISLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLVLMDISPPTATITFIILLLLTVLEFAVALIQAYVFTLLVSLYLHDNT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7919..8599
location: region:7919-8599:1
so has part: feature:7919-8599:1:exon

YP_665634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7919-8599:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: COX3
nomenclature: Official Symbol: mt-Co3 | Name: cytochrome c oxidase III, mitochondrial | Provided by: RGD:621873
note: Cox3; Co3; COIII
so part of: sequence
location: 8599..9382
location: region:8599-9382:1
so has part: feature:8599-9382:1:exon
subclass of: SO_0000010

26204
type: Gene
SIO_000068: ncbigene

621873
type: RGD
SIO_000068: rgd

position:9382:1
position: 9382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8599-9382:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: COX3
note: cytochrome c oxidase subunit 3; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9382,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQTHAYHMVNPSPWPLTGALSALLLTSGLVMWFHYNSTILLSLGLLTNILTMYQWWRDIIREGTYQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLVPTHDLGGCWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRNHMNQALLITILLGLYFTILQASEYFETSFSISDGIYGSTFFMATGFHGLHVIIGSTFLIVCLLRQLKFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8599..9382
location: region:8599-9382:1
so has part: feature:8599-9382:1:exon

YP_665635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8599-9382:1:exon

Trng
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tg
gene: Trng
gene synonym: mt-Tg
so part of: sequence
location: 9383..9450
location: region:9383-9450:1
so has part: feature:9383-9450:1:exon
subclass of: SO_0000663

359816
type: Gene
SIO_000068: ncbigene

position:9383:1
position: 9383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9450:1
position: 9450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9383-9450:1:exon

Trng
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tg
gene: Trng
gene synonym: mt-Tg
product: tRNA-Gly
SIO_010081: Trng
subclass of: SO_0000673
so part of: Trng
location: 9383..9450
location: region:9383-9450:1
so has part: feature:9383-9450:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9383-9450:1:exon

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND3
nomenclature: Official Symbol: mt-Nd3 | Name: NADH dehydrogenase 3, mitochondrial | Provided by: RGD:620557
note: Nd3; NADH3
so part of: sequence
location: 9451..9798
location: region:9451-9798:1
so has part: feature:9451-9798:1:exon
subclass of: SO_0000010

26199
type: Gene
SIO_000068: ncbigene

620557
type: RGD
SIO_000068: rgd

position:9451:1
position: 9451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9798:1
position: 9798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9451-9798:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLLIIITINITLSFILISIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNTTTMMATAFILVTILALGLSYEWTQKGLEWTE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9451..9798
location: region:9451-9798:1
so has part: feature:9451-9798:1:exon

YP_665636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9451-9798:1:exon

Trnr
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tr
gene: Trnr
gene synonym: mt-Tr
so part of: sequence
location: 9800..9867
location: region:9800-9867:1
so has part: feature:9800-9867:1:exon
subclass of: SO_0000663

170616
type: Gene
SIO_000068: ncbigene

position:9800:1
position: 9800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9867:1
position: 9867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9800-9867:1:exon

Trnr
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tr
gene: Trnr
gene synonym: mt-Tr
product: tRNA-Arg
SIO_010081: Trnr
subclass of: SO_0000673
so part of: Trnr
location: 9800..9867
location: region:9800-9867:1
so has part: feature:9800-9867:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9800-9867:1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND4L
nomenclature: Official Symbol: mt-Nd4l | Name: NADH dehdrogenase 4L, mitochondrial | Provided by: RGD:620494
note: Nd4l; NADH4L
so part of: sequence
location: 9870..10166
location: region:9870-10166:1
so has part: feature:9870-10166:1:exon
subclass of: SO_0000010

26200
type: Gene
SIO_000068: ncbigene

620494
type: RGD
SIO_000068: rgd

position:9870:1
position: 9870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10166:1
position: 10166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9870-10166:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTSAFLNLTMAFTLSLLGTFMFRSHLMSTLLCLEGMMLSLFVMTSTSTLNSNSMISMTIPITILVFAACEAAVGLALLVKISNTYGTDYVQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9870..10166
location: region:9870-10166:1
so has part: feature:9870-10166:1:exon

YP_665637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9870-10166:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND4
nomenclature: Official Symbol: mt-Nd4 | Name: NADH dehydrogenase 4, mitochondrial | Provided by: RGD:620559
note: NADH4
so part of: sequence
location: 10160..11537
location: region:10160-11537:1
so has part: feature:10160-11537:1:exon
subclass of: SO_0000010

26201
type: Gene
SIO_000068: ncbigene

620559
type: RGD
SIO_000068: rgd

position:10160:1
position: 10160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11537:1
position: 11537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10160-11537:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11537,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIIFPSIMLLPLTWLSANKKIWTNVTSYSFLVSLLSLSLLWQNDENYLNFSVMFSSDPLSTPLIILTTWLLPLMMLASQNHMKKENMMHQKLYISMLISLQILLIMTFSATELILFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALISIQNSMGTLNFLILSLTTHPLPSTWSNTILWLACMMAFMIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRVSIILDPLTKSLAYPFIILSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVITAIMIQTPWSFMGATMLMIAHGLTSSLLFCLANTNYERIHSRTMIMARGLQMIFPLMATWWLLASLANLALPPLINLMGELFIVMATFSWSNPSIILMATNIVITGIYSMYMIITTQRGKLTSHMNNLQPSHTRELTLMALHIIPLMLLTINPKLITGLTM
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10160..11537
location: region:10160-11537:1
so has part: feature:10160-11537:1:exon

YP_665638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10160-11537:1:exon

Trnh
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Th
gene: Trnh
gene synonym: mt-Th
so part of: sequence
location: 11538..11605
location: region:11538-11605:1
so has part: feature:11538-11605:1:exon
subclass of: SO_0000663

170618
type: Gene
SIO_000068: ncbigene

position:11538:1
position: 11538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11605:1
position: 11605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11538-11605:1:exon

Trnh
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Th
gene: Trnh
gene synonym: mt-Th
product: tRNA-His
SIO_010081: Trnh
subclass of: SO_0000673
so part of: Trnh
location: 11538..11605
location: region:11538-11605:1
so has part: feature:11538-11605:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11538-11605:1:exon

Trns2
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Ts2
gene: Trns2
gene synonym: mt-Ts2
so part of: sequence
location: 11606..11665
location: region:11606-11665:1
so has part: feature:11606-11665:1:exon
subclass of: SO_0000663

359843
type: Gene
SIO_000068: ncbigene

position:11606:1
position: 11606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11665:1
position: 11665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11606-11665:1:exon

Trns2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Ts2
gene: Trns2
gene synonym: mt-Ts2
product: tRNA-Ser
codon recognized: AGY
SIO_010081: Trns2
subclass of: SO_0000673
so part of: Trns2
location: 11606..11665
location: region:11606-11665:1
so has part: feature:11606-11665:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11606-11665:1:exon

Trnl2
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-T2
gene: Trnl2
gene synonym: mt-T2
so part of: sequence
location: 11665..11735
location: region:11665-11735:1
so has part: feature:11665-11735:1:exon
subclass of: SO_0000663

359842
type: Gene
SIO_000068: ncbigene

position:11735:1
position: 11735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11665-11735:1:exon

Trnl2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-T2
gene: Trnl2
gene synonym: mt-T2
product: tRNA-Leu
codon recognized: CUN
SIO_010081: Trnl2
subclass of: SO_0000673
so part of: Trnl2
location: 11665..11735
location: region:11665-11735:1
so has part: feature:11665-11735:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11665-11735:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND5
nomenclature: Official Symbol: mt-Nd5 | Name: NADH dehydrogenase 5, mitochondrial | Provided by: RGD:620560
note: Nd5; NADH5
so part of: sequence
location: 11736..13565
location: region:11736-13565:1
so has part: feature:11736-13565:1:exon
subclass of: SO_0000010

26202
type: Gene
SIO_000068: ncbigene

620560
type: RGD
SIO_000068: rgd

position:11736:1
position: 11736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13565:1
position: 13565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11736-13565:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNMMTSSILMILILLTTPIIISMTNLPKLIDFPSYATSSIKFSFLLSLLPLLLFFHHNTEYMITNWHWLTINSIKLTMSFKIDYFSILFLSVALFVTWSIMQFSSWYMHSDPHINRFIKYLMMFLITMLILTSANNLFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAILYNRVGDIGFILAMTWFCLNMNSWELQQIFLTNTNNLVPLTGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLMIRFHPLTSNNSTIMTAMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHSLNDEQDIRKMGNMMKAMPFTSSCLIIGSLALTGMPFLTGFYSKDLIIEAINTCNTNAWALMITLIATSMTAVYSMRIIYFVTMTKPRYSPLITINENNPNLINPIKRLALGSILAGFLISLNIPPTNIQILTMPWHLKMTALLITILGFAIALELNNLTLNLSMSKPTKLSSFSTSLGYYPPIMHRIIPQKTLNSSYKLSLNLLDLIWLEKTIPKSTSITQTQLSKMMSNQKGLIKLYFLSFLITISLIFILHTLNPEWFQ
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11736..13565
location: region:11736-13565:1
so has part: feature:11736-13565:1:exon

YP_665639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11736-13565:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: ND6
nomenclature: Official Symbol: mt-Nd6 | Name: NADH dehydrogenase 6, mitochondrial | Provided by: RGD:620561
note: NADH6
so part of: sequence
location: complement(13543..14061)
location: region:13543-14061:-1
so has part: feature:13543-14061:-1:exon
subclass of: SO_0000010

26203
type: Gene
SIO_000068: ncbigene

620561
type: RGD
SIO_000068: rgd

position:13543:-1
position: 13543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14061:-1
position: 14061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13543-14061:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTNYMFILSLLFLTGCLGLALKPSPIYGGLGLIVSGCIGCLMVLGFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPETWGSNWFIFSFFVLGLFMELVVFYLFSLNNKVELVDFDSLGDWLMYEIDDVGVMLEGGIGVAAIYSCATWMMVVAGWSLFAGIFIIIEITRD
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13543..14061)
location: region:13543-14061:-1
so has part: feature:13543-14061:-1:exon

YP_665640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13543-14061:-1:exon

Trne
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Te
gene: Trne
gene synonym: mt-Te
so part of: sequence
location: complement(14062..14130)
location: region:14062-14130:-1
so has part: feature:14062-14130:-1:exon
subclass of: SO_0000663

170619
type: Gene
SIO_000068: ncbigene

position:14062:-1
position: 14062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14130:-1
position: 14130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14062-14130:-1:exon

Trne
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Te
gene: Trne
gene synonym: mt-Te
product: tRNA-Glu
SIO_010081: Trne
subclass of: SO_0000673
so part of: Trne
location: complement(14062..14130)
location: region:14062-14130:-1
so has part: feature:14062-14130:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14062-14130:-1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
gene: CYTB
nomenclature: Official Symbol: mt-Cytb | Name: cytochrome b, mitochondrial | Provided by: RGD:620081
so part of: sequence
location: 14136..15278
location: region:14136-15278:1
so has part: feature:14136-15278:1:exon
subclass of: SO_0000010

26192
type: Gene
SIO_000068: ncbigene

620081
type: RGD
SIO_000068: rgd

position:14136:1
position: 14136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15278:1
position: 15278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14136-15278:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10116
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MTNIRKSHPLFKIINHSFIDLPAPSNISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYTFLETWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLLLFLMTLVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALILSILILAFLPFLHTSKQRSLTFRPITQILYWILVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIVEDKMLKWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14136..15278
location: region:14136-15278:1
so has part: feature:14136-15278:1:exon

YP_665641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14136-15278:1:exon

Trnt
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tt
gene: Trnt
gene synonym: mt-Tt
so part of: sequence
location: 15280..15346
location: region:15280-15346:1
so has part: feature:15280-15346:1:exon
subclass of: SO_0000663

170620
type: Gene
SIO_000068: ncbigene

position:15280:1
position: 15280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15346:1
position: 15346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15280-15346:1:exon

Trnt
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tt
gene: Trnt
gene synonym: mt-Tt
product: tRNA-Thr
SIO_010081: Trnt
subclass of: SO_0000673
so part of: Trnt
location: 15280..15346
location: region:15280-15346:1
so has part: feature:15280-15346:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15280-15346:1:exon

Trnp
type: Gene
subclass of: SO_0000704
RO_0002162: 10116
alternative label: mt-Tp
gene: Trnp
gene synonym: mt-Tp
so part of: sequence
location: complement(15348..15415)
location: region:15348-15415:-1
so has part: feature:15348-15415:-1:exon
subclass of: SO_0000663

170621
type: Gene
SIO_000068: ncbigene

position:15348:-1
position: 15348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15415:-1
position: 15415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15348-15415:-1:exon

Trnp
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10116
alternative label: mt-Tp
gene: Trnp
gene synonym: mt-Tp
product: tRNA-Pro
SIO_010081: Trnp
subclass of: SO_0000673
so part of: Trnp
location: complement(15348..15415)
location: region:15348-15415:-1
so has part: feature:15348-15415:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15348-15415:-1:exon

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 10116
so part of: sequence
location: 15416..16313
location: region:15416-16313:1
so has part: feature:15416-16313:1:region

position:15416:1
position: 15416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15416-16313:1:region