Mus musculus mitochondrion, complete genome.
type: Entry
definition: Mus musculus mitochondrion, complete genome.
sequence version: NC_005089.1
sequence date: 2023-04-03
sequence: sequence
division: ROD
label: NC_005089.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Mus musculus (house mouse)
organism: Mus musculus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus.
reference: 1
references: 12954771
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AY172335.\n\nOn Sep 11, 2003 this sequence version replaced NC_001569.1.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16299
topology: circular
so has quality: SO_0000988
location: 1..16299
location: region:1-16299:1
RO_0002162: 10090

NC_005089
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Revisiting the mouse mitochondrial DNA sequence
author: Bayona-Bafaluy, M.P.
author: Acin-Perez, R.
author: Mullikin, J.C.
author: Park, J.S.
author: Moreno-Loshuertos, R.
author: Hu, P.
author: Perez-Martos, A.
author: Fernandez-Silva, P.
author: Bai, Y.
author: Enriquez, J.A.
journal: Nucleic Acids Res.
volume: 31
issue: 18
pages: 5349-5355
year: 2003
pubmed: 12954771

12954771
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (09-SEP-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Mullikin, J.C.
author: Enriquez, J.A.
journal: Submitted (04-NOV-2002) Bioquimica y Biologia Molecular y Celular, Universidad de Zaragoza, Miguel Servet, 177, Zaragoza 50013, Espana

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16299:1
position: 16299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16299:1:source
so part of: sequence
organism: Mus musculus
organelle: mitochondrion
mol type: genomic DNA
strain: C57BL/6J

10090
type: Taxonomy
SIO_000068: taxonomy

TrnF
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnF
nomenclature: Official Symbol: mt-Tf | Name: tRNA phenylalanine, mitochondrial | Provided by: MGI:MGI:102487
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:exon
subclass of: SO_0000663

17730
type: Gene
SIO_000068: ncbigene

MGI:102487
type: MGI
SIO_000068: mgd

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:exon

TrnF
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnF
product: tRNA-Phe
anticodon: (pos:33..35,aa:Phe,seq:gaa)
SIO_010081: TrnF
subclass of: SO_0000673
so part of: TrnF
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:exon

mt-Rnr1
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: mt-Rnr1
nomenclature: Official Symbol: mt-Rnr1 | Name: 12S rRNA, mitochondrial | Provided by: MGI:MGI:102493
note: 12S; 12SrRNA
so part of: sequence
location: 70..1024
location: region:70-1024:1
so has part: feature:70-1024:1:exon
subclass of: SO_0000573

17724
type: Gene
SIO_000068: ncbigene

MGI:102493
type: MGI
SIO_000068: mgd

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1024:1
position: 1024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1024:1:exon

mt-Rnr1
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 10090
gene: mt-Rnr1
product: s-rRNA
note: 12S rRNA, mitochondrial
SIO_010081: mt-Rnr1
subclass of: SO_0000673
so part of: mt-Rnr1
location: 70..1024
location: region:70-1024:1
so has part: feature:70-1024:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70-1024:1:exon

TrnV
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnV
nomenclature: Official Symbol: mt-Tv | Name: tRNA valine, mitochondrial | Provided by: MGI:MGI:102472
so part of: sequence
location: 1025..1093
location: region:1025-1093:1
so has part: feature:1025-1093:1:exon
subclass of: SO_0000663

17745
type: Gene
SIO_000068: ncbigene

MGI:102472
type: MGI
SIO_000068: mgd

position:1025:1
position: 1025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1093:1:exon

TrnV
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnV
product: tRNA-Val
anticodon: (pos:1057..1059,aa:Val,seq:tac)
SIO_010081: TrnV
subclass of: SO_0000673
so part of: TrnV
location: 1025..1093
location: region:1025-1093:1
so has part: feature:1025-1093:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1093:1:exon

mt-Rnr2
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: mt-Rnr2
nomenclature: Official Symbol: mt-Rnr2 | Name: 16S rRNA, mitochondrial | Provided by: MGI:MGI:102492
note: 16S; 16S rRNA
so part of: sequence
location: 1094..2675
location: region:1094-2675:1
so has part: feature:1094-2675:1:exon
subclass of: SO_0000573

17725
type: Gene
SIO_000068: ncbigene

MGI:102492
type: MGI
SIO_000068: mgd

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2675:1
position: 2675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2675:1:exon

mt-Rnr2
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 10090
gene: mt-Rnr2
product: 16S ribosomal RNA
SIO_010081: mt-Rnr2
subclass of: SO_0000673
so part of: mt-Rnr2
location: 1094..2675
location: region:1094-2675:1
so has part: feature:1094-2675:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2675:1:exon

mt-Rnr2
type: Variation
subclass of: SO_0000109
RO_0002162: 10090
gene: mt-Rnr2
note: compared to strains SAMP1 and SAMP8
replace: c
SIO_010081: mt-Rnr2
subclass of: SO_0000673
so part of: mt-Rnr2
location: 2256
location: region:2256-2256:1
so has part: feature:2256-2256:1:exon

position:2256:1
position: 2256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2256-2256:1:exon

TrnL1
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnL1
nomenclature: Official Symbol: mt-Tl1 | Name: tRNA leucine 1, mitochondrial | Provided by: MGI:MGI:102482
note: tRNA-Leu_1
so part of: sequence
location: 2676..2750
location: region:2676-2750:1
so has part: feature:2676-2750:1:exon
subclass of: SO_0000663

17735
type: Gene
SIO_000068: ncbigene

MGI:102482
type: MGI
SIO_000068: mgd

position:2676:1
position: 2676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2750:1
position: 2750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2676-2750:1:exon

TrnL1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnL1
product: tRNA-Leu
codon recognized: UUR
SIO_010081: TrnL1
subclass of: SO_0000673
so part of: TrnL1
location: 2676..2750
location: region:2676-2750:1
so has part: feature:2676-2750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2676-2750:1:exon

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND1
nomenclature: Official Symbol: mt-Nd1 | Name: NADH dehydrogenase 1, mitochondrial | Provided by: MGI:MGI:101787
so part of: sequence
location: 2751..3707
location: region:2751-3707:1
so has part: feature:2751-3707:1:exon
subclass of: SO_0000010

17716
type: Gene
SIO_000068: ncbigene

MGI:101787
type: MGI
SIO_000068: mgd

position:2751:1
position: 2751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3707:1
position: 3707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2751-3707:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND1
EC number: 1.6.5.3
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MFFINILTLLVPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSMSLFIIAPTLSLTLALSLWVPLPMPHPLINLNLGILFILATSSLSVYSILWSGWASNSKYSLFGALRAVAQTISYEVTMAIILLSVLLMNGSYSLQTLITTQEHMWLLLPAWPMAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALTTIIFLGPLYYINLPELYSTNFMMEALLLSSTFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIFTAGVPPYM
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2751..3707
location: region:2751-3707:1
so has part: feature:2751-3707:1:exon

NP_904328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2751-3707:1:exon

TrnI
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnI
nomenclature: Official Symbol: mt-Ti | Name: tRNA isoleucine, mitochondrial | Provided by: MGI:MGI:102484
so part of: sequence
location: 3706..3774
location: region:3706-3774:1
so has part: feature:3706-3774:1:exon
subclass of: SO_0000663

17733
type: Gene
SIO_000068: ncbigene

MGI:102484
type: MGI
SIO_000068: mgd

position:3706:1
position: 3706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3774:1
position: 3774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3706-3774:1:exon

TrnI
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnI
product: tRNA-Ile
anticodon: (pos:3735..3737,aa:Ile,seq:gat)
SIO_010081: TrnI
subclass of: SO_0000673
so part of: TrnI
location: 3706..3774
location: region:3706-3774:1
so has part: feature:3706-3774:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3706-3774:1:exon

TrnQ
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnQ
nomenclature: Official Symbol: mt-Tq | Name: tRNA glutamine, mitochondrial | Provided by: MGI:MGI:102477
so part of: sequence
location: complement(3772..3842)
location: region:3772-3842:-1
so has part: feature:3772-3842:-1:exon
subclass of: SO_0000663

17740
type: Gene
SIO_000068: ncbigene

MGI:102477
type: MGI
SIO_000068: mgd

position:3772:-1
position: 3772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3842:-1
position: 3842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3772-3842:-1:exon

TrnQ
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnQ
product: tRNA-Gln
SIO_010081: TrnQ
subclass of: SO_0000673
so part of: TrnQ
location: complement(3772..3842)
location: region:3772-3842:-1
so has part: feature:3772-3842:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3772-3842:-1:exon

TrnM
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnM
nomenclature: Official Symbol: mt-Tm | Name: tRNA methionine, mitochondrial | Provided by: MGI:MGI:102480
so part of: sequence
location: 3845..3913
location: region:3845-3913:1
so has part: feature:3845-3913:1:exon
subclass of: SO_0000663

17737
type: Gene
SIO_000068: ncbigene

MGI:102480
type: MGI
SIO_000068: mgd

position:3845:1
position: 3845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3913:1
position: 3913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3845-3913:1:exon

TrnM
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnM
product: tRNA-Met
anticodon: (pos:3875..3877,aa:Met,seq:cat)
SIO_010081: TrnM
subclass of: SO_0000673
so part of: TrnM
location: 3845..3913
location: region:3845-3913:1
so has part: feature:3845-3913:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3845-3913:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND2
nomenclature: Official Symbol: mt-Nd2 | Name: NADH dehydrogenase 2, mitochondrial | Provided by: MGI:MGI:102500
note: URF2
so part of: sequence
location: 3914..4951
location: region:3914-4951:1
so has part: feature:3914-4951:1:exon
subclass of: SO_0000010

17717
type: Gene
SIO_000068: ncbigene

MGI:102500
type: MGI
SIO_000068: mgd

position:3914:1
position: 3914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4951:1
position: 4951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3914-4951:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND2
EC number: 1.6.5.3
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPITLAIIYFTIFLGPVITMSSTNLMLMWVGLEFSLLAIIPMLINKKNPRSTEAATKYFVTQATASMIILLAIVLNYKQLGTWMFQQQTNGLILNMTLMALSMKLGLAPFHFWLPEVTQGIPLHMGLILLTWQKIAPLSILIQIYPLLNSTIILMLAITSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAILPYNPSLTLLNLMIYIILTAPMFMALMLNNSMTINSISLLWNKTPAMLTMISLMLLSLGGLPPLTGFLPKWIIITELMKNNCLIMATLMAMMALLNLFFYTRLIYSTSLTMFPTNNNSKMMTHQTKTKPNLMFSTLAIMSTMTLPLAPQLIT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3914..4951
location: region:3914-4951:1
so has part: feature:3914-4951:1:exon

NP_904329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3914-4951:1:exon

TrnW
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnW
nomenclature: Official Symbol: mt-Tw | Name: tRNA tryptophan, mitochondrial | Provided by: MGI:MGI:102471
so part of: sequence
location: 4950..5016
location: region:4950-5016:1
so has part: feature:4950-5016:1:exon
subclass of: SO_0000663

17746
type: Gene
SIO_000068: ncbigene

MGI:102471
type: MGI
SIO_000068: mgd

position:4950:1
position: 4950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5016:1
position: 5016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4950-5016:1:exon

TrnW
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnW
product: tRNA-Trp
anticodon: (pos:4981..4983,aa:Trp,seq:tca)
SIO_010081: TrnW
subclass of: SO_0000673
so part of: TrnW
location: 4950..5016
location: region:4950-5016:1
so has part: feature:4950-5016:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4950-5016:1:exon

TrnA
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnA
nomenclature: Official Symbol: mt-Ta | Name: tRNA alanine, mitochondrial | Provided by: MGI:MGI:102491
so part of: sequence
location: complement(5018..5086)
location: region:5018-5086:-1
so has part: feature:5018-5086:-1:exon
subclass of: SO_0000663

17726
type: Gene
SIO_000068: ncbigene

MGI:102491
type: MGI
SIO_000068: mgd

position:5018:-1
position: 5018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5086:-1
position: 5086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5018-5086:-1:exon

TrnA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnA
product: tRNA-Ala
SIO_010081: TrnA
subclass of: SO_0000673
so part of: TrnA
location: complement(5018..5086)
location: region:5018-5086:-1
so has part: feature:5018-5086:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5018-5086:-1:exon

TrnN
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnN
nomenclature: Official Symbol: mt-Tn | Name: tRNA asparagine, mitochondrial | Provided by: MGI:MGI:102479
so part of: sequence
location: complement(5089..5159)
location: region:5089-5159:-1
so has part: feature:5089-5159:-1:exon
subclass of: SO_0000663

17738
type: Gene
SIO_000068: ncbigene

MGI:102479
type: MGI
SIO_000068: mgd

position:5089:-1
position: 5089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5159:-1
position: 5159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5089-5159:-1:exon

TrnN
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnN
product: tRNA-Asn
SIO_010081: TrnN
subclass of: SO_0000673
so part of: TrnN
location: complement(5089..5159)
location: region:5089-5159:-1
so has part: feature:5089-5159:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5089-5159:-1:exon

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 10090
note: L-strand origin of replication; mt-Olr; OL; light strand origin of replication, mitochondrial
direction: right
so part of: sequence
location: 5160..5191
location: region:5160-5191:1
so has part: feature:5160-5191:1:region

17723
type: Gene
SIO_000068: ncbigene

MGI:102494
type: MGI
SIO_000068: mgd

position:5160:1
position: 5160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5191:1
position: 5191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5160-5191:1:region

TrnC
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnC
nomenclature: Official Symbol: mt-Tc | Name: tRNA cysteine, mitochondrial | Provided by: MGI:MGI:102490
so part of: sequence
location: complement(5192..5257)
location: region:5192-5257:-1
so has part: feature:5192-5257:-1:exon
subclass of: SO_0000663

17727
type: Gene
SIO_000068: ncbigene

MGI:102490
type: MGI
SIO_000068: mgd

position:5192:-1
position: 5192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5257:-1
position: 5257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5192-5257:-1:exon

TrnC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnC
product: tRNA-Cys
SIO_010081: TrnC
subclass of: SO_0000673
so part of: TrnC
location: complement(5192..5257)
location: region:5192-5257:-1
so has part: feature:5192-5257:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5192-5257:-1:exon

TrnY
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnY
nomenclature: Official Symbol: mt-Ty | Name: tRNA tyrosine, mitochondrial | Provided by: MGI:MGI:102470
so part of: sequence
location: complement(5260..5326)
location: region:5260-5326:-1
so has part: feature:5260-5326:-1:exon
subclass of: SO_0000663

17747
type: Gene
SIO_000068: ncbigene

MGI:102470
type: MGI
SIO_000068: mgd

position:5260:-1
position: 5260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5326:-1
position: 5326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5260-5326:-1:exon

TrnY
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnY
product: tRNA-Tyr
SIO_010081: TrnY
subclass of: SO_0000673
so part of: TrnY
location: complement(5260..5326)
location: region:5260-5326:-1
so has part: feature:5260-5326:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5260-5326:-1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
alternative label: CoxI
gene: COX1
gene synonym: CoxI
nomenclature: Official Symbol: mt-Co1 | Name: cytochrome c oxidase I, mitochondrial | Provided by: MGI:MGI:102504
note: COI; CCOI
so part of: sequence
location: 5328..6872
location: region:5328-6872:1
so has part: feature:5328-6872:1:exon
subclass of: SO_0000010

17708
type: Gene
SIO_000068: ncbigene

MGI:102504
type: MGI
SIO_000068: mgd

position:5328:1
position: 5328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6872:1
position: 6872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5328-6872:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
alternative label: CoxI
gene: COX1
gene synonym: CoxI
EC number: 1.9.3.1
function: oxidative phosphorylation
note: cytochrome oxidase subunit 1; cytochrome c oxidase polypeptide 1; cytochrome c oxidase subunit 1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSILIRAELGQPGALLGDDQIYNVIVTAHAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGFTLDDTWAKAHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTTWNTVSSMGSFISLTAVLIMIFMIWEAFASKREVMSVSYASTNLEWLHGCPPPYHTFEEPTYVKVK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5328..6872
location: region:5328-6872:1
so has part: feature:5328-6872:1:exon

NP_904330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5328-6872:1:exon

TrnS1
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnS1
nomenclature: Official Symbol: mt-Ts1 | Name: tRNA serine 1, mitochondrial | Provided by: MGI:MGI:102475
so part of: sequence
location: complement(6870..6938)
location: region:6870-6938:-1
so has part: feature:6870-6938:-1:exon
subclass of: SO_0000663

17742
type: Gene
SIO_000068: ncbigene

MGI:102475
type: MGI
SIO_000068: mgd

position:6870:-1
position: 6870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6938:-1
position: 6938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6870-6938:-1:exon

TrnS1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnS1
product: tRNA-Ser
note: tRNA-Ser_1
codon recognized: UCN
SIO_010081: TrnS1
subclass of: SO_0000673
so part of: TrnS1
location: complement(6870..6938)
location: region:6870-6938:-1
so has part: feature:6870-6938:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6870-6938:-1:exon

TrnD
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnD
nomenclature: Official Symbol: mt-Td | Name: tRNA aspartic acid, mitochondrial | Provided by: MGI:MGI:102489
so part of: sequence
location: 6942..7011
location: region:6942-7011:1
so has part: feature:6942-7011:1:exon
subclass of: SO_0000663

17728
type: Gene
SIO_000068: ncbigene

MGI:102489
type: MGI
SIO_000068: mgd

position:6942:1
position: 6942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7011:1
position: 7011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6942-7011:1:exon

TrnD
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnD
product: tRNA-Asp
anticodon: (pos:6973..6975,aa:Asp,seq:gtc)
SIO_010081: TrnD
subclass of: SO_0000673
so part of: TrnD
location: 6942..7011
location: region:6942-7011:1
so has part: feature:6942-7011:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6942-7011:1:exon

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: COX2
nomenclature: Official Symbol: mt-Co2 | Name: cytochrome c oxidase II, mitochondrial | Provided by: MGI:MGI:102503
note: COII; COXII
so part of: sequence
location: 7013..7696
location: region:7013-7696:1
so has part: feature:7013-7696:1:exon
subclass of: SO_0000010

17709
type: Gene
SIO_000068: ncbigene

MGI:102503
type: MGI
SIO_000068: mgd

position:7013:1
position: 7013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7696:1
position: 7696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7013-7696:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: COX2
EC number: 1.9.3.1
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAVILIMIALPSLRILYMMDEINNPVLTVKTMGHQWYWSYEYTDYEDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFMPIVLEMVPLKYFENWSASMI
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7013..7696
location: region:7013-7696:1
so has part: feature:7013-7696:1:exon

NP_904331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7013-7696:1:exon

TrnK
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnK
nomenclature: Official Symbol: mt-Tk | Name: tRNA lysine, mitochondrial | Provided by: MGI:MGI:102483
so part of: sequence
location: 7700..7764
location: region:7700-7764:1
so has part: feature:7700-7764:1:exon
subclass of: SO_0000663

17734
type: Gene
SIO_000068: ncbigene

MGI:102483
type: MGI
SIO_000068: mgd

position:7700:1
position: 7700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7764:1
position: 7764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7700-7764:1:exon

TrnK
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnK
product: tRNA-Lys
anticodon: (pos:7726..7728,aa:Lys,seq:ttt)
SIO_010081: TrnK
subclass of: SO_0000673
so part of: TrnK
location: 7700..7764
location: region:7700-7764:1
so has part: feature:7700-7764:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7700-7764:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ATP8
nomenclature: Official Symbol: mt-Atp8 | Name: ATP synthase 8, mitochondrial | Provided by: MGI:MGI:99926
so part of: sequence
location: 7766..7969
location: region:7766-7969:1
so has part: feature:7766-7969:1:exon
subclass of: SO_0000010

17706
type: Gene
SIO_000068: ncbigene

MGI:99926
type: MGI
SIO_000068: mgd

position:7766:1
position: 7766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7969:1
position: 7969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7766-7969:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ATP8
EC number: 3.6.1.3
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLDTSTWFITIISSMITLFILFQLKVSSQTFPLAPSPKSLTTMKVKTPWELKWTKIYLPHSLPQQ
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7766..7969
location: region:7766-7969:1
so has part: feature:7766-7969:1:exon

NP_904332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7766-7969:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ATP6
nomenclature: Official Symbol: mt-Atp6 | Name: ATP synthase 6, mitochondrial | Provided by: MGI:MGI:99927
so part of: sequence
location: 7927..8607
location: region:7927-8607:1
so has part: feature:7927-8607:1:exon
subclass of: SO_0000010

17705
type: Gene
SIO_000068: ncbigene

MGI:99927
type: MGI
SIO_000068: mgd

position:7927:1
position: 7927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8607:1
position: 8607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7927-8607:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ATP6
EC number: 3.6.1.3
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNENLFASFITPTMMGFPIVVAIIMFPSILFPSSKRLINNRLHSFQHWLVKLIIKQMMLIHTPKGRTWTLMIVSLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVITGFRHKLKSSLAHFLPQGTPISLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLVLMNISPPTATITFIILLLLTILEFAVALIQAYVFTLLVSLYLHDNT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7927..8607
location: region:7927-8607:1
so has part: feature:7927-8607:1:exon

NP_904333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7927-8607:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: COX3
nomenclature: Official Symbol: mt-Co3 | Name: cytochrome c oxidase III, mitochondrial | Provided by: MGI:MGI:102502
note: COIII
so part of: sequence
location: 8607..9390
location: region:8607-9390:1
so has part: feature:8607-9390:1:exon
subclass of: SO_0000010

17710
type: Gene
SIO_000068: ncbigene

MGI:102502
type: MGI
SIO_000068: mgd

position:9390:1
position: 9390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8607-9390:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: COX3
EC number: 1.9.3.1
function: oxidative phosphorylation
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA; cytochrome oxidase sununit 3
codon start: 1
transl except: (pos:9390,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQTHAYHMVNPSPWPLTGAFSALLLTSGLVMWFHYNSITLLTLGLLTNILTMYQWWRDVIREGTYQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLVPTHDLGGCWPPTGISPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGKRNHMNQALLITIMLGLYFTILQASEYFETSFSISDGIYGSTFFMATGFHGLHVIIGSTFLIVCLLRQLKFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8607..9390
location: region:8607-9390:1
so has part: feature:8607-9390:1:exon

NP_904334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8607-9390:1:exon

COX3
type: Variation
subclass of: SO_0000109
RO_0002162: 10090
gene: COX3
note: compared to strains C3H/He, Balb/cJ, A/J and NOD/LtJ
replace: a
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 9348
location: region:9348-9348:1
so has part: feature:9348-9348:1:exon

position:9348:1
position: 9348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9348-9348:1:exon

TrnG
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnG
nomenclature: Official Symbol: mt-Tg | Name: tRNA glycine, mitochondrial | Provided by: MGI:MGI:102486
so part of: sequence
location: 9391..9458
location: region:9391-9458:1
so has part: feature:9391-9458:1:exon
subclass of: SO_0000663

17731
type: Gene
SIO_000068: ncbigene

MGI:102486
type: MGI
SIO_000068: mgd

position:9391:1
position: 9391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9458:1
position: 9458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9391-9458:1:exon

TrnG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnG
product: tRNA-Gly
anticodon: (pos:9421..9423,aa:Gly,seq:tcc)
SIO_010081: TrnG
subclass of: SO_0000673
so part of: TrnG
location: 9391..9458
location: region:9391-9458:1
so has part: feature:9391-9458:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9391-9458:1:exon

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND3
nomenclature: Official Symbol: mt-Nd3 | Name: NADH dehydrogenase 3, mitochondrial | Provided by: MGI:MGI:102499
note: URF3
so part of: sequence
location: 9459..9806
location: region:9459-9806:1
so has part: feature:9459-9806:1:exon
subclass of: SO_0000010

17718
type: Gene
SIO_000068: ncbigene

MGI:102499
type: MGI
SIO_000068: mgd

position:9459:1
position: 9459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9806:1
position: 9806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9459-9806:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND3
EC number: 1.6.5.3
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLYTVIFINILLSLTLILVAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTIKTSTMMIMAFILVTILSLGLAYEWTQKGLEWTE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9459..9806
location: region:9459-9806:1
so has part: feature:9459-9806:1:exon

NP_904335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9459-9806:1:exon

ND3
type: Variation
subclass of: SO_0000109
RO_0002162: 10090
gene: ND3
note: compared to other inbred strains
replace: c
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9461
location: region:9461-9461:1
so has part: feature:9461-9461:1:exon

position:9461:1
position: 9461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9461-9461:1:exon

TrnR
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnR
nomenclature: Official Symbol: mt-Tr | Name: tRNA arginine, mitochondrial | Provided by: MGI:MGI:102476
so part of: sequence
location: 9808..9875
location: region:9808-9875:1
so has part: feature:9808-9875:1:exon
subclass of: SO_0000663

17741
type: Gene
SIO_000068: ncbigene

MGI:102476
type: MGI
SIO_000068: mgd

position:9808:1
position: 9808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9875:1
position: 9875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9808-9875:1:exon

TrnR
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnR
product: tRNA-Arg
anticodon: (pos:9838..9840,aa:Arg,seq:tcg)
SIO_010081: TrnR
subclass of: SO_0000673
so part of: TrnR
location: 9808..9875
location: region:9808-9875:1
so has part: feature:9808-9875:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9808-9875:1:exon

TrnR
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 10090
gene: TrnR
note: polymorphic region
SIO_010081: TrnR
subclass of: SO_0000673
so part of: TrnR
location: 9821..9830
location: region:9821-9830:1
so has part: feature:9821-9830:1:exon

position:9821:1
position: 9821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9830:1
position: 9830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9821-9830:1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND4L
nomenclature: Official Symbol: mt-Nd4l | Name: NADH dehydrogenase 4L, mitochondrial | Provided by: MGI:MGI:102497
note: URF4L
so part of: sequence
location: 9877..10173
location: region:9877-10173:1
so has part: feature:9877-10173:1:exon
subclass of: SO_0000010

17720
type: Gene
SIO_000068: ncbigene

MGI:102497
type: MGI
SIO_000068: mgd

position:9877:1
position: 9877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10173:1
position: 10173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9877-10173:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND4L
EC number: 1.6.5.3
function: oxidative phosphorylation
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MPSTFFNLTMAFSLSLLGTLMFRSHLMSTLLCLEGMVLSLFIMTSVTSLNSNSMSSMPIPITILVFAACEAAVGLALLVKVSNTYGTDYVQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9877..10173
location: region:9877-10173:1
so has part: feature:9877-10173:1:exon

NP_904336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9877-10173:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND4
nomenclature: Official Symbol: mt-Nd4 | Name: NADH dehydrogenase 4, mitochondrial | Provided by: MGI:MGI:102498
note: URF4
so part of: sequence
location: 10167..11544
location: region:10167-11544:1
so has part: feature:10167-11544:1:exon
subclass of: SO_0000010

17719
type: Gene
SIO_000068: ncbigene

MGI:102498
type: MGI
SIO_000068: mgd

position:10167:1
position: 10167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11544:1
position: 11544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10167-11544:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND4
EC number: 1.6.5.3
function: oxidative phosphorylation
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11544,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIILPSLMLLPLTWLSSPKKTWTNVTSYSFLISLTSLTLLWQTDENYKNFSNMFSSDPLSTPLIILTAWLLPLMLMASQNHLKKDNNVLQKLYISMLISLQILLIMTFSATELIMFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALILIQNHVGTLNLMILSFTTHTLDASWSNNLLWLACMMAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGSYGMIRISIILDPLTKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQMVFPLMATWWLMASLANLALPPSINLMGELFITMSLFSWSNFTIILMGINIIITGMYSMYMIITTQRGKLTNHMINLQPSHTRELTLMALHMIPLILLTTSPKLITGLTM
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10167..11544
location: region:10167-11544:1
so has part: feature:10167-11544:1:exon

NP_904337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10167-11544:1:exon

ND4
type: Variation
subclass of: SO_0000109
RO_0002162: 10090
gene: ND4
note: compared to strain SAMP8
replace: a
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10847
location: region:10847-10847:1
so has part: feature:10847-10847:1:exon

position:10847:1
position: 10847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10847-10847:1:exon

ND4
type: Variation
subclass of: SO_0000109
RO_0002162: 10090
gene: ND4
note: compared to strains SAMP1 and SAMP8
replace: g
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 11181
location: region:11181-11181:1
so has part: feature:11181-11181:1:exon

position:11181:1
position: 11181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11181-11181:1:exon

TrnH
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnH
nomenclature: Official Symbol: mt-Th | Name: tRNA histidine, mitochondrial | Provided by: MGI:MGI:102485
so part of: sequence
location: 11546..11612
location: region:11546-11612:1
so has part: feature:11546-11612:1:exon
subclass of: SO_0000663

17732
type: Gene
SIO_000068: ncbigene

MGI:102485
type: MGI
SIO_000068: mgd

position:11546:1
position: 11546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11612:1
position: 11612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11546-11612:1:exon

TrnH
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnH
product: tRNA-His
anticodon: (pos:11575..11577,aa:His,seq:gtg)
SIO_010081: TrnH
subclass of: SO_0000673
so part of: TrnH
location: 11546..11612
location: region:11546-11612:1
so has part: feature:11546-11612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11546-11612:1:exon

TrnS2
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnS2
nomenclature: Official Symbol: mt-Ts2 | Name: tRNA serine 2, mitochondrial | Provided by: MGI:MGI:102474
note: tRNA-Ser_2
so part of: sequence
location: 11613..11671
location: region:11613-11671:1
so has part: feature:11613-11671:1:exon
subclass of: SO_0000663

17743
type: Gene
SIO_000068: ncbigene

MGI:102474
type: MGI
SIO_000068: mgd

position:11613:1
position: 11613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11671:1
position: 11671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11613-11671:1:exon

TrnS2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnS2
product: tRNA-Ser
anticodon: (pos:11632..11634,aa:Ser,seq:gct)
codon recognized: AGY
SIO_010081: TrnS2
subclass of: SO_0000673
so part of: TrnS2
location: 11613..11671
location: region:11613-11671:1
so has part: feature:11613-11671:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11613-11671:1:exon

TrnL2
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnL2
nomenclature: Official Symbol: mt-Tl2 | Name: tRNA leucine 2, mitochondrial | Provided by: MGI:MGI:102481
note: tRNA-Leu_2
so part of: sequence
location: 11671..11741
location: region:11671-11741:1
so has part: feature:11671-11741:1:exon
subclass of: SO_0000663

17736
type: Gene
SIO_000068: ncbigene

MGI:102481
type: MGI
SIO_000068: mgd

position:11741:1
position: 11741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11671-11741:1:exon

TrnL2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnL2
product: tRNA-Leu
codon recognized: CUN
SIO_010081: TrnL2
subclass of: SO_0000673
so part of: TrnL2
location: 11671..11741
location: region:11671-11741:1
so has part: feature:11671-11741:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11671-11741:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND5
nomenclature: Official Symbol: mt-Nd5 | Name: NADH dehydrogenase 5, mitochondrial | Provided by: MGI:MGI:102496
note: URF5; 0610010I05Rik
so part of: sequence
location: 11742..13565
location: region:11742-13565:1
so has part: feature:11742-13565:1:exon
subclass of: SO_0000010

17721
type: Gene
SIO_000068: ncbigene

MGI:102496
type: MGI
SIO_000068: mgd

position:11742:1
position: 11742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13565:1
position: 13565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11742-13565:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND5
EC number: 1.6.5.3
function: oxidative phosphorylation
note: NADH dehydrogenase chain 5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNIFTTSILLIFILLLSPILISMSNLIKHINFPLYTTTSIKFSFIISLLPLLMFFHNNMEYMITTWHWVTMNSMELKMSFKTDFFSILFTSVALFVTWSIMQFSSWYMHSDPNINRFIKYLTLFLITMLILTSANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAMVWFSLNMNSWELQQIMFSNNNDNLIPLMGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRFHPLTTNNNFILTTMLCLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQPHLAFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPLISINENDPDLMNPIKRLAFGSIFAGFVISYNIPPTSIPVLTMPWFLKTTALIISVLGFLIALELNNLTMKLSMNKANPYSSFSTLLGFFPSIIHRITPMKSLNLSLKTSLTLLDLIWLEKTIPKSTSTLHTNMTTLTTNQKGLIKLYFMSFLINIILIIILYSINLE
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11742..13565
location: region:11742-13565:1
so has part: feature:11742-13565:1:exon

NP_904338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11742-13565:1:exon

ND5
type: Variation
subclass of: SO_0000109
RO_0002162: 10090
gene: ND5
note: compared to strains SAMR1, SAMP1 and SAMP8
replace: c
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 13052
location: region:13052-13052:1
so has part: feature:13052-13052:1:exon

position:13052:1
position: 13052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13052-13052:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: ND6
nomenclature: Official Symbol: mt-Nd6 | Name: NADH dehydrogenase 6, mitochondrial | Provided by: MGI:MGI:102495
note: URF6
so part of: sequence
location: complement(13552..14070)
location: region:13552-14070:-1
so has part: feature:13552-14070:-1:exon
subclass of: SO_0000010

17722
type: Gene
SIO_000068: ncbigene

MGI:102495
type: MGI
SIO_000068: mgd

position:13552:-1
position: 13552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14070:-1
position: 14070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13552-14070:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: ND6
EC number: 1.6.5.3
function: oxidative phosphorylation
note: EST AA435281
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MNNYIFVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPETWGSNWLILGFLVLGVIMEVFLICVLNYYDEVGVINLDGLGDWLMYEVDDVGVMLEGGIGVAAMYSCATWMMVVAGWSLFAGIFIIIEITRD
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13552..14070)
location: region:13552-14070:-1
so has part: feature:13552-14070:-1:exon

NP_904339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13552-14070:-1:exon

TrnE
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnE
nomenclature: Official Symbol: mt-Te | Name: tRNA glutamic acid, mitochondrial | Provided by: MGI:MGI:102488
so part of: sequence
location: complement(14071..14139)
location: region:14071-14139:-1
so has part: feature:14071-14139:-1:exon
subclass of: SO_0000663

17729
type: Gene
SIO_000068: ncbigene

MGI:102488
type: MGI
SIO_000068: mgd

position:14071:-1
position: 14071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14139:-1
position: 14139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14071-14139:-1:exon

TrnE
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnE
product: tRNA-Glu
SIO_010081: TrnE
subclass of: SO_0000673
so part of: TrnE
location: complement(14071..14139)
location: region:14071-14139:-1
so has part: feature:14071-14139:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14071-14139:-1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: CYTB
nomenclature: Official Symbol: mt-Cytb | Name: cytochrome b, mitochondrial | Provided by: MGI:MGI:102501
so part of: sequence
location: 14145..15288
location: region:14145-15288:1
so has part: feature:14145-15288:1:exon
subclass of: SO_0000010

17711
type: Gene
SIO_000068: ncbigene

MGI:102501
type: MGI
SIO_000068: mgd

position:14145:1
position: 14145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15288:1
position: 15288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14145-15288:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10090
gene: CYTB
EC number: 1.10.2.2
function: oxidative phosphorylation
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15288,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTNMRKTHPLFKIINHSFIDLPAPSNISSWWNFGSLLGVCLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGLYYGSYTFMETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILIMFLILMTLVLFFPDMLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALMPFLHTSKQRSLMFRPITQILYWILVANLLILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKMLKLYP
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14145..15288
location: region:14145-15288:1
so has part: feature:14145-15288:1:exon

NP_904340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14145-15288:1:exon

TrnT
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnT
nomenclature: Official Symbol: mt-Tt | Name: tRNA threonine, mitochondrial | Provided by: MGI:MGI:102473
so part of: sequence
location: 15289..15355
location: region:15289-15355:1
so has part: feature:15289-15355:1:exon
subclass of: SO_0000663

17744
type: Gene
SIO_000068: ncbigene

MGI:102473
type: MGI
SIO_000068: mgd

position:15289:1
position: 15289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15355:1
position: 15355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15289-15355:1:exon

TrnT
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnT
product: tRNA-Thr
anticodon: (pos:15319..15321,aa:Thr,seq:tgt)
SIO_010081: TrnT
subclass of: SO_0000673
so part of: TrnT
location: 15289..15355
location: region:15289-15355:1
so has part: feature:15289-15355:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15289-15355:1:exon

TrnP
type: Gene
subclass of: SO_0000704
RO_0002162: 10090
gene: TrnP
nomenclature: Official Symbol: mt-Tp | Name: tRNA proline, mitochondrial | Provided by: MGI:MGI:102478
so part of: sequence
location: complement(15356..15422)
location: region:15356-15422:-1
so has part: feature:15356-15422:-1:exon
subclass of: SO_0000663

17739
type: Gene
SIO_000068: ncbigene

MGI:102478
type: MGI
SIO_000068: mgd

position:15356:-1
position: 15356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15422:-1
position: 15422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15356-15422:-1:exon

TrnP
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10090
gene: TrnP
product: tRNA-Pro
SIO_010081: TrnP
subclass of: SO_0000673
so part of: TrnP
location: complement(15356..15422)
location: region:15356-15422:-1
so has part: feature:15356-15422:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15356-15422:-1:exon

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 10090
note: mt-Dcr; d-loop control region-mitochondrial
so part of: sequence
location: 15423..16299
location: region:15423-16299:1
so has part: feature:15423-16299:1:region

MGI:108422
type: MGI
SIO_000068: mgd

position:15423:1
position: 15423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15423-16299:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 10090
note: ETAS1; extended termination associated sequence 1; annotated according to Sbisa E., et. al. (1997) Gene 205:125-140
so part of: sequence
location: 15451..15509
location: region:15451-15509:1
so has part: feature:15451-15509:1:region

position:15451:1
position: 15451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15509:1
position: 15509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15451-15509:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 10090
note: ETAS2; extended termination associated sequence 2; annotated according to Sbisa E., et. al. (1997) Gene 205:125-140
so part of: sequence
location: 15515..15558
location: region:15515-15558:1
so has part: feature:15515-15558:1:region

position:15515:1
position: 15515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15558:1
position: 15558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15515-15558:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 10090
note: CSB1; conserved sequencing block 1; annotated according to Sbisa E., et. al. (1997) Gene 205:125-140
so part of: sequence
location: 16035..16058
location: region:16035-16058:1
so has part: feature:16035-16058:1:region

position:16035:1
position: 16035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16058:1
position: 16058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16035-16058:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 10090
note: CSB2; conserved sequencing block 2; annotated according to Sbisa E., et. al. (1997) Gene 205:125-140
so part of: sequence
location: 16089..16104
location: region:16089-16104:1
so has part: feature:16089-16104:1:region

position:16089:1
position: 16089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16104:1
position: 16104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16089-16104:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 10090
note: CSB3; conserved sequencing block 3; annotated according to Sbisa E., et. al. (1997) Gene 205:125-140
so part of: sequence
location: 16114..16131
location: region:16114-16131:1
so has part: feature:16114-16131:1:region

position:16114:1
position: 16114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16131:1
position: 16131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16114-16131:1:region