Mus caroli isolate R5231 mitochondrion, complete genome.
type: Entry
definition: Mus caroli isolate R5231 mitochondrion, complete genome.
sequence version: NC_025268.1
sequence date: 2023-04-03
sequence: sequence
division: ROD
label: NC_025268.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Mus caroli (Ryukyu mouse)
organism: Mus caroli
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus.
reference: 1
references: 25275614
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KJ530558.\n\n##Assembly-Data-START##\nAssembly Method :: BWA v. 0.5.9\nSequencing Technology :: Illumina\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16313
topology: circular
so has quality: SO_0000988
location: 1..16313
location: region:1-16313:1
RO_0002162: 10089

NC_025268
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank)
author: Tsangaras, K.
author: Wales, N.
author: Sicheritz-Ponten, T.
author: Rasmussen, S.
author: Michaux, J.
author: Ishida, Y.
author: Morand, S.
author: Kampmann, M.L.
author: Gilbert, M.T.
author: Greenwood, A.D.
journal: PLoS ONE 9 (10), E109101 (2014)
pubmed: 25275614
comments: Publication Status: Online-Only

25275614
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (23-OCT-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Tsangaras, K.
author: Wales, N.
author: Sicheritz-Ponten, T.
author: Michaux, J.
author: Ishida, Y.
author: Morand, S.
author: Roca, A.L.
author: Gilbert, M.P.
author: Greenwood, A.D.
journal: Submitted (03-MAR-2014) Wildlife Diseases, Leibniz-Institute for Zoo and Wildlife Disease, Alfred-Kowalke str 17, Berlin 10315, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16313:1
position: 16313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16313:1:source
so part of: sequence
organism: Mus caroli
organelle: mitochondrion
mol type: genomic DNA
isolate: R5231

10089
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 10089
product: 12S ribosomal RNA
so part of: sequence
location: 71..1030
location: region:71-1030:1
so has part: feature:71-1030:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1030:1
position: 1030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1030:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Val
so part of: sequence
location: 1031..1099
location: region:1031-1099:1
so has part: feature:1031-1099:1:region

position:1031:1
position: 1031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1099:1
position: 1099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1031-1099:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 10089
product: 16S ribosomal RNA
so part of: sequence
location: 1100..2684
location: region:1100-2684:1
so has part: feature:1100-2684:1:region

position:1100:1
position: 1100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2684:1
position: 2684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1100-2684:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Leu
so part of: sequence
location: 2685..2759
location: region:2685-2759:1
so has part: feature:2685-2759:1:region

position:2685:1
position: 2685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759:1
position: 2759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2685-2759:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND1
so part of: sequence
location: 2760..3714
location: region:2760-3714:1
so has part: feature:2760-3714:1:exon
subclass of: SO_0000010

20832255
type: Gene
SIO_000068: ncbigene

position:2760:1
position: 2760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3714:1
position: 3714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2760-3714:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3714,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MYFINILTLLVPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSISLFIIAPTLSLTLALSLWVPLPMPHPLINLNLGILFILATSSLSVYSILWSGWASNSKYSLFGALRAVAQTISYEVTMAIILLSVLLMSGSYSLQTLITTQEHLWLIIPAWPMAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALTTVIFLGPLHYINIPELYSINFMTEALLLSSAFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIFLAGTPPLM
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2760..3714
location: region:2760-3714:1
so has part: feature:2760-3714:1:exon

YP_009092072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2760-3714:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Ile
so part of: sequence
location: 3715..3783
location: region:3715-3783:1
so has part: feature:3715-3783:1:region

position:3715:1
position: 3715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3783:1
position: 3783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3715-3783:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Gln
so part of: sequence
location: complement(3781..3849)
location: region:3781-3849:-1
so has part: feature:3781-3849:-1:region

position:3781:-1
position: 3781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3849:-1
position: 3849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781-3849:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Met
so part of: sequence
location: 3851..3919
location: region:3851-3919:1
so has part: feature:3851-3919:1:region

position:3851:1
position: 3851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3919:1
position: 3919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3851-3919:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND2
so part of: sequence
location: 3920..4955
location: region:3920-4955:1
so has part: feature:3920-4955:1:exon
subclass of: SO_0000010

20832243
type: Gene
SIO_000068: ncbigene

position:3920:1
position: 3920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4955:1
position: 4955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3920-4955:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4955,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPITLIIIYSTIFLGPVITMSSTNLLLMWVGLEFSLLSIIPLLINKKNPRSTEAATKYFVTQATASMIILLAIVLNYKQLGTWMFQQQTSSLILNMSLMALSMKLGLAPFHFWLPEVTQGIPLHTGLILLTWQKIAPLSILIQIFHLLDSTIILLMAISSIFLGAWGGLNQTQTRKIMAYSSIAHMGWMLAILPYNPSLTLLNLAIYILLTIPMFMALMLNNSMNINSISLLWNKTPAVLTMISLILLSLGGLPPLTGFLPKWIIITELMKNNCLILATLMAMMALLNLFFYTRLIYSTSLTMFPTNNNSKMMSFQPKFKSYLTLSIMTILSTMTLPLSPQLIM
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 3920..4955
location: region:3920-4955:1
so has part: feature:3920-4955:1:exon

YP_009092008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3920-4955:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Trp
so part of: sequence
location: 4956..5023
location: region:4956-5023:1
so has part: feature:4956-5023:1:region

position:4956:1
position: 4956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5023:1
position: 5023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4956-5023:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Ala
so part of: sequence
location: complement(5024..5092)
location: region:5024-5092:-1
so has part: feature:5024-5092:-1:region

position:5024:-1
position: 5024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5092:-1
position: 5092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5024-5092:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Asn
so part of: sequence
location: complement(5096..5166)
location: region:5096-5166:-1
so has part: feature:5096-5166:-1:region

position:5096:-1
position: 5096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5166:-1
position: 5166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5096-5166:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 10089
note: light strand origin of replication
so part of: sequence
location: 5166..5201
location: region:5166-5201:1
so has part: feature:5166-5201:1:region

position:5166:1
position: 5166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5201:1
position: 5201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5166-5201:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Cys
so part of: sequence
location: complement(5202..5267)
location: region:5202-5267:-1
so has part: feature:5202-5267:-1:region

position:5202:-1
position: 5202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5267:-1
position: 5267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5202-5267:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Tyr
so part of: sequence
location: complement(5270..5337)
location: region:5270-5337:-1
so has part: feature:5270-5337:-1:region

position:5270:-1
position: 5270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5337:-1
position: 5337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5270-5337:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: COX1
so part of: sequence
location: 5338..6882
location: region:5338-6882:1
so has part: feature:5338-6882:1:exon
subclass of: SO_0000010

20832244
type: Gene
SIO_000068: ncbigene

position:5338:1
position: 5338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6882:1
position: 6882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5338-6882:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSILIRAELGQPGALLGDDQIYNVIVTAHAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGYTLDDTWAKAHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTTWNTVSSMGSFISLTAVLVMIFMIWEAFASKREVSSVSYASTNLEWLHGCPPPYHTFEEPTYVKVK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5338..6882
location: region:5338-6882:1
so has part: feature:5338-6882:1:exon

YP_009092009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5338-6882:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Ser
so part of: sequence
location: complement(6880..6948)
location: region:6880-6948:-1
so has part: feature:6880-6948:-1:region

position:6880:-1
position: 6880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6948:-1
position: 6948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6880-6948:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Asp
so part of: sequence
location: 6952..7020
location: region:6952-7020:1
so has part: feature:6952-7020:1:region

position:6952:1
position: 6952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7020:1
position: 7020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6952-7020:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: COX2
so part of: sequence
location: 7022..7705
location: region:7022-7705:1
so has part: feature:7022-7705:1:exon
subclass of: SO_0000010

20832245
type: Gene
SIO_000068: ncbigene

position:7022:1
position: 7022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7705:1
position: 7705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7022-7705:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAYPFQLGLQDATSPIMEELMNFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAVILIMIALPSLRILYMMDEINNPVLTVKTMGHQWYWSYEYTDYEDLCFDSYMVPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFMPIVLEMVPLKYFENWSASMI
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7022..7705
location: region:7022-7705:1
so has part: feature:7022-7705:1:exon

YP_009092010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7022-7705:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Lys
so part of: sequence
location: 7709..7774
location: region:7709-7774:1
so has part: feature:7709-7774:1:region

position:7709:1
position: 7709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7774:1
position: 7774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7709-7774:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ATP8
so part of: sequence
location: 7775..7978
location: region:7775-7978:1
so has part: feature:7775-7978:1:exon
subclass of: SO_0000010

20832246
type: Gene
SIO_000068: ncbigene

position:7775:1
position: 7775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7978:1
position: 7978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7775-7978:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLDTSTWFITIISSMITLFILFQLKISSQIFPLPPSPKSLTTMKVKNPWESKWTKIYLPHSLPQQ
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7775..7978
location: region:7775-7978:1
so has part: feature:7775-7978:1:exon

YP_009092011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7775-7978:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ATP6
so part of: sequence
location: 7936..8616
location: region:7936-8616:1
so has part: feature:7936-8616:1:exon
subclass of: SO_0000010

20832247
type: Gene
SIO_000068: ncbigene

position:7936:1
position: 7936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8616:1
position: 8616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7936-8616:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNENLFASFITPTVMGLPVVVTIIMFPSILFPSSKRLINNRLHSFQHWLIKLIIKQMMLIHTPKGRTWALMIISLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVIMGFRHKLKSSLAHFLPQGTPITLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLVLMNISPPTATITFIILLLLTVLEFAVALIQAYVFTLLVSLYLHDNT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 7936..8616
location: region:7936-8616:1
so has part: feature:7936-8616:1:exon

YP_009092012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7936-8616:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: COX3
so part of: sequence
location: 8616..9399
location: region:8616-9399:1
so has part: feature:8616-9399:1:exon
subclass of: SO_0000010

20832248
type: Gene
SIO_000068: ncbigene

position:9399:1
position: 9399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8616-9399:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9399,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQTHAYHMVNPSPWPLTGAFSALLLTSGLVMWFHFNSITLLTLGLLTNILTMYQWWRDVIREGTYQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLVPTHDLGGCWPPTGIFPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGKRNHMNQALLITIMLGLYFTVLQASEYFETSFSISDGIYGSTFFMATGFHGLHVIIGSTFLIICLLRQLKFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8616..9399
location: region:8616-9399:1
so has part: feature:8616-9399:1:exon

YP_009092013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8616-9399:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Gly
so part of: sequence
location: 9400..9467
location: region:9400-9467:1
so has part: feature:9400-9467:1:region

position:9400:1
position: 9400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9467:1
position: 9467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9400-9467:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND3
so part of: sequence
location: 9468..9815
location: region:9468-9815:1
so has part: feature:9468-9815:1:exon
subclass of: SO_0000010

20832249
type: Gene
SIO_000068: ncbigene

position:9468:1
position: 9468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9815:1
position: 9815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9468-9815:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLFIVIFINTLLSLALISIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNTTIMMTMAFILVTILSLGLMYEWLQKGLEWTE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9468..9815
location: region:9468-9815:1
so has part: feature:9468-9815:1:exon

YP_009092014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9468-9815:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Arg
so part of: sequence
location: 9817..9886
location: region:9817-9886:1
so has part: feature:9817-9886:1:region

position:9817:1
position: 9817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9886:1
position: 9886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9817-9886:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND4L
so part of: sequence
location: 9888..10184
location: region:9888-10184:1
so has part: feature:9888-10184:1:exon
subclass of: SO_0000010

20832250
type: Gene
SIO_000068: ncbigene

position:9888:1
position: 9888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10184:1
position: 10184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9888-10184:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTSAFFNLTLSFTLSLLGTLMFRSHLMSTLLCLEGMMLSLFIMTSMTTLNSNSMSSMPIPITILVFAACEAAVGLALLVKVSNTYGTDYVQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9888..10184
location: region:9888-10184:1
so has part: feature:9888-10184:1:exon

YP_009092015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9888-10184:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND4
so part of: sequence
location: 10178..11555
location: region:10178-11555:1
so has part: feature:10178-11555:1:exon
subclass of: SO_0000010

20832251
type: Gene
SIO_000068: ncbigene

position:10178:1
position: 10178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11555:1
position: 11555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10178-11555:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11555,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIIFPSFMLLPLVWLSNPKKTWMNTTSYSFMVSLISLTLLWQTDENYQNFSNMFSSDPLSTPLIILTTWLLPLMLMASQNHLKKENPLLQKLYISLLVSLQILLIMTFSATELIMFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIALILIQNYIGTLNFTILLLTTHTMDNSWSNSLLWLACMMAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGSYGMIRISVILDPLTKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMIMARGLQMIFPLMSTCWLLASLANLALPPSINLMGELFITISLFSWSNFSIILMGTNIIITGMYSMYMVITTQRGKLTSHMINLQPTHTRESTLMALHLIPLILLTVSPKLITGLTM
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10178..11555
location: region:10178-11555:1
so has part: feature:10178-11555:1:exon

YP_009092016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10178-11555:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-His
so part of: sequence
location: 11556..11623
location: region:11556-11623:1
so has part: feature:11556-11623:1:region

position:11556:1
position: 11556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11623:1
position: 11623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11556-11623:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Ser
so part of: sequence
location: 11624..11682
location: region:11624-11682:1
so has part: feature:11624-11682:1:region

position:11624:1
position: 11624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11682:1
position: 11682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11624-11682:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Leu
so part of: sequence
location: 11683..11752
location: region:11683-11752:1
so has part: feature:11683-11752:1:region

position:11683:1
position: 11683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11752:1
position: 11752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11683-11752:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND5
so part of: sequence
location: 11753..13582
location: region:11753-13582:1
so has part: feature:11753-13582:1:exon
subclass of: SO_0000010

20832252
type: Gene
SIO_000068: ncbigene

position:11753:1
position: 11753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13582:1
position: 13582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11753-13582:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNIFTTSILLIFILLLSPIFISMLNLTKHINFPLYTTTSIKFSFILSLFPLLLFLYNNMEYMITTWQWITMNSMKLTMSFKIDYFSILFMSVALFVTWSIMQFSSWYMHSDPHINRFIKYLTLFLITMLILTSANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAMTWFSLNMNSWEFQQIMLSNNDNLIPLTGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLTSNNDNIMTIMLCLGALTTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGMNQPYLAFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNMMKTMPFTSSCMIIGSLALTGMPFLTGFYSKDLIIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRYPPLISINENDPDLINPIKRLALGSIFAGFIISYNIPPTNIQTLTMPWFLKTTALIISVLGFLIALELNNLTMKFSTNKSNSFSSFSTLLGYFPPIMHRIMPMKSLNISLKTSLTLLDLIWLEKLIPKSTSTIHTSMTTLTTNQKGLIKLYFMSFLVSMILIIIIYMINPEWSQ
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11753..13582
location: region:11753-13582:1
so has part: feature:11753-13582:1:exon

YP_009092017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11753-13582:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: ND6
so part of: sequence
location: complement(13560..14078)
location: region:13560-14078:-1
so has part: feature:13560-14078:-1:exon
subclass of: SO_0000010

20832253
type: Gene
SIO_000068: ncbigene

position:13560:-1
position: 13560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14078:-1
position: 14078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13560-14078:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MNNYIFILSSLFLVGCLGLALKPSPIYGGLGLIVSGFIGCLMVLGFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPETWGSNWLIFGFLILGVLLEVFTIYTLDYYDEVELISLDSLGDWLMYEIDDVGVMLEGGIGVAAMYSCATWMMVVAGWSLFAGIFIIIEITRD
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13560..14078)
location: region:13560-14078:-1
so has part: feature:13560-14078:-1:exon

YP_009092018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13560-14078:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Glu
so part of: sequence
location: complement(14079..14147)
location: region:14079-14147:-1
so has part: feature:14079-14147:-1:region

position:14079:-1
position: 14079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14147:-1
position: 14147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14079-14147:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 10089
gene: CYTB
so part of: sequence
location: 14153..15296
location: region:14153-15296:1
so has part: feature:14153-15296:1:exon
subclass of: SO_0000010

20832254
type: Gene
SIO_000068: ncbigene

position:14153:1
position: 14153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15296:1
position: 15296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14153-15296:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 10089
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15296,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTNIRKTHPLFKIINHSFVDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGIYYGSYAFMETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILIMFLFLMTLVLFFPDMLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQILYWVLVANLLILTWIGGQPVEHPFIIIGQLASISYFTIILILMPISGIIEDKMLKLHP
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14153..15296
location: region:14153-15296:1
so has part: feature:14153-15296:1:exon

YP_009092019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14153-15296:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Thr
so part of: sequence
location: 15297..15363
location: region:15297-15363:1
so has part: feature:15297-15363:1:region

position:15297:1
position: 15297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15363:1
position: 15363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15297-15363:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 10089
product: tRNA-Pro
so part of: sequence
location: complement(15364..15431)
location: region:15364-15431:-1
so has part: feature:15364-15431:-1:region

position:15364:-1
position: 15364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15431:-1
position: 15431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15364-15431:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 10089
so part of: sequence
location: 15432..16313
location: region:15432-16313:1
so has part: feature:15432-16313:1:region

position:15432:1
position: 15432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15432-16313:1:region