Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed5, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
Halophilic archaea isolated from solar salterns and salt lakes
Submitted (18-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085306.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 658.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:44:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,555\nCDSs (total) :: 6,488\nGenes (coding) :: 6,279\nCDSs (with protein) :: 6,279\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 2\nPseudo Genes (total) :: 209\nCDSs (without protein) :: 209\nPseudo Genes (ambiguous residues) :: 0 of 209\nPseudo Genes (frameshifted) :: 83 of 209\nPseudo Genes (incomplete) :: 138 of 209\nPseudo Genes (internal stop) :: 62 of 209\nPseudo Genes (multiple problems) :: 59 of 209\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haladaptatus pallidirubidus
COORDINATES: similar to AA sequence:RefSeq:WP_008313456.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005043755.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_006106690.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008896802.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008894989.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143115.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007975914.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274221.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF013434.2
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007140629.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014030880.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF012738.2
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010651298.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF022932.2
COORDINATES: similar to AA sequence:RefSeq:WP_020392529.1
COORDINATES: protein motif:HMM:NF038032.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006077303.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_006629475.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981635.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060470.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006053586.1
COORDINATES: similar to AA sequence:RefSeq:WP_007999278.1
COORDINATES: similar to AA sequence:RefSeq:WP_004044077.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004518043.1
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_006110572.1
COORDINATES: similar to AA sequence:RefSeq:WP_006649317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739469.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_007108991.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184781.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378132.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378130.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945969.1
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_006111479.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007982461.1
COORDINATES: similar to AA sequence:RefSeq:WP_012642386.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - intracellular manganese ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981006.1
COORDINATES: similar to AA sequence:RefSeq:WP_008896316.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_009366525.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009366527.1
COORDINATES: similar to AA sequence:RefSeq:WP_009366528.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694562.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007260885.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301713.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_007690673.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694491.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006824003.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004592796.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945243.1
GO:0016405 - CoA-ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015301704.1
COORDINATES: similar to AA sequence:RefSeq:WP_006091252.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF024844.2
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008162885.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012596.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006089901.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018129040.1
BtrH N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008095412.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017344601.1
COORDINATES: protein motif:HMM:NF013402.2
COORDINATES: similar to AA sequence:RefSeq:WP_006666932.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004268146.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979082.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979081.1
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012941762.1
COORDINATES: protein motif:HMM:NF024769.2
COORDINATES: similar to AA sequence:RefSeq:WP_014988984.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
medium chain dehydrogenase/reductase family protein
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: protein motif:HMM:NF036688.2
COORDINATES: similar to AA sequence:RefSeq:WP_013893655.1
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_006827242.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012488.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminotransferase class V-fold PLP-dependent enzyme