Haladaptatus pallidirubidus strain YIM 93656 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haladaptataceae; Haladaptatus.
Halophilic archaea isolated from solar salterns and salt lakes
Submitted (18-OCT-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP085302.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 658.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 12:44:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,555\nCDSs (total) :: 6,488\nGenes (coding) :: 6,279\nCDSs (with protein) :: 6,279\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 2\nPseudo Genes (total) :: 209\nCDSs (without protein) :: 209\nPseudo Genes (ambiguous residues) :: 0 of 209\nPseudo Genes (frameshifted) :: 83 of 209\nPseudo Genes (incomplete) :: 138 of 209\nPseudo Genes (internal stop) :: 62 of 209\nPseudo Genes (multiple problems) :: 59 of 209\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Haladaptatus pallidirubidus
COORDINATES: similar to AA sequence:RefSeq:WP_007190053.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008165015.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007998123.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007693150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012996418.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007981944.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007276135.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008309344.1
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012943253.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184671.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004056739.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006169315.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094615.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013440820.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008422275.1
COORDINATES: protein motif:HMM:NF023568.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009367612.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008096448.1
COORDINATES: similar to AA sequence:RefSeq:WP_006108925.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: protein motif:HMM:NF016831.2
COORDINATES: similar to AA sequence:RefSeq:WP_014050924.1
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: similar to AA sequence:RefSeq:WP_003981368.1
COORDINATES: similar to AA sequence:RefSeq:WP_014732685.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004056155.1
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: similar to AA sequence:RefSeq:WP_006107449.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018837191.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006107450.1
COORDINATES: protein motif:HMM:NF013989.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014460836.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011225029.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035003.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141529.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043378.1
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_010045650.1
COORDINATES: similar to AA sequence:RefSeq:WP_006671838.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010903655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415963.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007260058.1
VapC toxin family PIN domain ribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_007979292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981530.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048574.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975810.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013640.2
COORDINATES: similar to AA sequence:RefSeq:WP_004959075.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885251.1
COORDINATES: similar to AA sequence:RefSeq:WP_004065137.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_008388930.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012942045.1
COORDINATES: similar to AA sequence:RefSeq:WP_007258339.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388935.1
COORDINATES: similar to AA sequence:RefSeq:WP_006165930.1
COORDINATES: similar to AA sequence:RefSeq:WP_004970335.1
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008388938.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007258347.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005557069.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051762.1
COORDINATES: similar to AA sequence:RefSeq:WP_006664283.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_006092643.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981521.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981524.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:TIGR03676.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015430.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF024698.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014458.2
COORDINATES: similar to AA sequence:RefSeq:WP_004967937.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388789.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014079.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_008426927.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320069.1
COORDINATES: similar to AA sequence:RefSeq:WP_004040863.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015320071.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008413988.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008388807.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048434.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008388805.1
phenylacetic acid degradation PaaB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004967926.1
COORDINATES: similar to AA sequence:RefSeq:WP_008413982.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_008388797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945242.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008413979.1
GO:0016405 - CoA-ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007276338.1
acyl-[acyl-carrier-protein] thioesterase
COORDINATES: similar to AA sequence:RefSeq:WP_006600962.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005553994.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015320061.1
COORDINATES: protein motif:HMM:NF013358.2
COORDINATES: similar to AA sequence:RefSeq:WP_015320059.1
GO:0046872 - metal ion binding [Evidence IEA]
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008894501.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008092524.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012471.2
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981500.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256277.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008576013.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF019352.2
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011565631.1
COORDINATES: protein motif:HMM:NF024976.2
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008010216.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981501.1
COORDINATES: similar to AA sequence:RefSeq:WP_004064647.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981497.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981498.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF036686.2
COORDINATES: similar to AA sequence:RefSeq:WP_006667574.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975873.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: similar to AA sequence:RefSeq:WP_005045583.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183368.1
COORDINATES: similar to AA sequence:RefSeq:WP_012942082.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_018114418.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004051887.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183506.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432935.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762316.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007703070.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696895.1
COORDINATES: protein motif:HMM:NF021759.2
COORDINATES: similar to AA sequence:RefSeq:WP_004052086.1
zinc-dependent alcohol dehydrogenase family protein
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053281.1
COORDINATES: similar to AA sequence:RefSeq:WP_009366452.1
diacylglycerol kinase family lipid kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015320378.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007142028.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979064.1
COORDINATES: protein motif:HMM:NF013776.2
COORDINATES: similar to AA sequence:RefSeq:WP_007975914.1
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183554.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890438.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344000.1
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_008572869.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762160.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008414035.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594581.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911518.1
COORDINATES: similar to AA sequence:RefSeq:WP_006142891.1
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107235.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825820.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595762.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005040411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005553200.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979268.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_015762108.1
COORDINATES: protein motif:HMM:NF019846.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825769.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008418352.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825767.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825766.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418345.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667674.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106709.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451964.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875853.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004043392.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008388086.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276365.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388091.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007276367.1
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008422464.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009761263.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007260857.1
Zn-ribbon domain-containing OB-fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892395.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF012935.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892404.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388523.1
COORDINATES: protein motif:HMM:NF013226.2
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007693979.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388526.1
COORDINATES: similar to AA sequence:RefSeq:WP_019121707.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276359.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967943.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004967944.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388533.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_005948656.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276355.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008384951.1
GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107361.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007701724.1
nucleoside recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009366946.1
COORDINATES: protein motif:HMM:NF022818.2
DUF3179 domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_008385165.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006823978.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006823976.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006107331.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694507.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_008413740.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324024.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895858.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004047011.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009367567.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007983127.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667775.1
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008096798.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007694538.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106861.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694547.1
COORDINATES: similar to AA sequence:RefSeq:WP_004972195.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008525523.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388297.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106867.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006824237.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694555.1
GO:0046559 - alpha-glucuronidase activity [Evidence IEA]
GO:0045493 - xylan catabolic process [Evidence IEA]
alpha-glucuronidase family glycosyl hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_007187735.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378252.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945319.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007977197.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533171.1
COORDINATES: protein motif:HMM:NF024804.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008388564.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185301.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094437.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094436.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378210.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667126.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107385.1
TetR/AcrR family transcriptional regulator
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004059190.1
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:NF015436.2
transporter associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008418313.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789326.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440752.1
COORDINATES: similar to AA sequence:RefSeq:WP_003387932.1
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007975915.1
COORDINATES: protein motif:HMM:NF015536.2
GO:0070004 - cysteine-type exopeptidase activity [Evidence IEA]; GO:0016805 - dipeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007981359.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981358.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992685.1
COORDINATES: similar to AA sequence:RefSeq:WP_007983327.1
COORDINATES: protein motif:HMM:NF019614.2
COORDINATES: protein motif:HMM:NF025156.2
COORDINATES: similar to AA sequence:RefSeq:WP_007981332.1
GO:0009001 - serine O-acetyltransferase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015300161.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879560.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012873923.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008523587.1
COORDINATES: similar to AA sequence:RefSeq:WP_008527573.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054231.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_005559651.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007978521.1
COORDINATES: similar to AA sequence:RefSeq:WP_008383305.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007983581.1
COORDINATES: similar to AA sequence:RefSeq:WP_005537329.1
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945835.1
COORDINATES: similar to AA sequence:RefSeq:WP_006078864.1
COORDINATES: similar to AA sequence:RefSeq:WP_018129190.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301511.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301512.1
COORDINATES: similar to AA sequence:RefSeq:WP_004973746.1
COORDINATES: protein motif:HMM:NF014299.2
COORDINATES: protein motif:HMM:NF019884.2
COORDINATES: similar to AA sequence:RefSeq:WP_004517570.1
COORDINATES: protein motif:HMM:NF019135.2
COORDINATES: similar to AA sequence:RefSeq:WP_008415652.1
COORDINATES: similar to AA sequence:RefSeq:WP_005039915.1
COORDINATES: protein motif:HMM:NF021362.2
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020222877.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107439.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558316.1
COORDINATES: protein motif:HMM:NF024953.2
COORDINATES: similar to AA sequence:RefSeq:WP_010502936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008425013.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881106.1
COORDINATES: protein motif:HMM:NF019013.2
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007978624.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060376.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981361.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_004057474.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807857.1
COORDINATES: similar to AA sequence:RefSeq:WP_020220707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945435.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018256594.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388446.1
COORDINATES: similar to AA sequence:RefSeq:WP_011225021.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807856.1
GO:0008150 - biological_process [Evidence IEA]
TIGR03557 family F420-dependent LLM class oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012945440.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388462.1
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945439.1
GO:0006020 - inositol metabolic process [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006092041.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF017855.2
COORDINATES: similar to AA sequence:RefSeq:WP_007258883.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979316.1
COORDINATES: similar to AA sequence:RefSeq:WP_009717101.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007702793.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696247.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006826328.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667205.1
quaternary ammonium compound efflux SMR transporter SugE
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007982848.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_006053473.1
GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004042400.1
COORDINATES: similar to AA sequence:RefSeq:WP_004978413.1
COORDINATES: similar to AA sequence:RefSeq:WP_007540549.1
COORDINATES: similar to AA sequence:RefSeq:WP_006824180.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694246.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739302.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF018595.2
COORDINATES: similar to AA sequence:RefSeq:WP_008321002.1
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]
GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005553615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006053465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388535.1
iron-containing alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004592455.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040612.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040609.1
COORDINATES: similar to AA sequence:RefSeq:WP_005040606.1
COORDINATES: similar to AA sequence:RefSeq:WP_010902130.1
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008320754.1
GO:0003711 - transcription elongation factor activity [Evidence IEA]
transcription elongation factor subunit Spt4
COORDINATES: similar to AA sequence:RefSeq:WP_006054341.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004056245.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458440.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF013933.2
COORDINATES: similar to AA sequence:RefSeq:WP_008159825.1
COORDINATES: similar to AA sequence:RefSeq:WP_008417029.1
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF010587.0
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014586.2
COORDINATES: similar to AA sequence:RefSeq:WP_004045139.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322551.1
GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]
GO:0072488 - ammonium transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF033497.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011225067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014039119.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762548.1
COORDINATES: protein motif:HMM:NF024214.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0061603 - molybdenum cofactor guanylyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020222736.1
COORDINATES: similar to AA sequence:RefSeq:WP_007259443.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0047889 - ferredoxin-nitrate reductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: protein motif:HMM:NF040388.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517659.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217266.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
glutamine synthetase beta-grasp domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007976550.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847924.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008007216.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004599341.1
GO:0030234 - enzyme regulator activity [Evidence IEA]
GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008416106.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006180345.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981519.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062638.1
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004060165.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981499.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981407.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762145.1
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013440447.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979291.1
COORDINATES: similar to AA sequence:RefSeq:WP_004063561.1
GO:0004540 - RNA nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006165229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694968.1
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: similar to AA sequence:RefSeq:WP_006672857.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012289708.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_008161749.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007975933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975931.1
COORDINATES: similar to AA sequence:RefSeq:WP_007975929.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979301.1
COORDINATES: protein motif:HMM:NF023043.2
COORDINATES: similar to AA sequence:RefSeq:WP_007982044.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694724.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009377959.1
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_012943131.1
COORDINATES: similar to AA sequence:RefSeq:WP_004591733.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696511.1
COORDINATES: similar to AA sequence:RefSeq:WP_004053033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050809.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004062763.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053053.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051497.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_008524566.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433327.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488223.1