Kosakonia oryzendophytica strain FY-07 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kosakonia.
Submitted (28-DEC-2022) College of Life Sciences, Nankai university, 94 Weijin Road, Nankai District, Tianjin 300071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP115660.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio v. v1; Illumina PE150 v. Qubit2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 229.0x\nSequencing Technology :: PacBio; Illumina PE150\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/17/2023 16:11:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,935\nCDSs (total) :: 4,825\nGenes (coding) :: 4,762\nCDSs (with protein) :: 4,762\nGenes (RNA) :: 110\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 6\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 28 of 63\nPseudo Genes (incomplete) :: 40 of 63\nPseudo Genes (internal stop) :: 13 of 63\nPseudo Genes (multiple problems) :: 15 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008324017.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008324014.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899450.1
COORDINATES: protein motif:HMM:NF013561.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017826.2
COORDINATES: protein motif:HMM:NF024776.2
COORDINATES: similar to AA sequence:RefSeq:WP_016151785.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324019.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324018.1