Indicator indicator isolate 239-I01 chromosome 42, UM_Iind_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Indicatoridae; Indicator.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051122.1.\nAssembly name: UM_Iind_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2023/01/13. The original whole-genome shotgun project\nhas the accession JAQHUL000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: JUN-2022\nAssembly Method :: Flye v. 2.8.1-b1676\nAssembly Name :: UM_Iind_1.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 254.0x\nSequencing Technology :: PacBio CLR\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_027791375.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/15/2023\n##Genome-Annotation-Data-END##
RAN binding protein 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
centromere protein T; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
THAP domain containing 11; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
nuclear transport factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear transport factor 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
nuclear transport factor 2, transcript variant X2
enhancer of mRNA decapping 4; Derived by automated computational analysis using gene prediction method: Gnomon.
neuritin 1 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
protein serine kinase H1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
chymotrypsin like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
exocyst complex component 3 like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
exocyst complex component 3-like protein
E2F transcription factor 4; Derived by automated computational analysis using gene prediction method: Gnomon.
engulfment and cell motility 3; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 208; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
microtubule associated tyrosine carboxypeptidase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated tyrosine carboxypeptidase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
microtubule-associated tyrosine carboxypeptidase 1
lecithin-cholesterol acyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
phosphatidylcholine-sterol acyltransferase
C-factor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
RHO family interacting cell polarization regulator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
RHO family interacting cell polarization regulator 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
rho family-interacting cell polarization regulator 1
CCCTC-binding factor; Derived by automated computational analysis using gene prediction method: Gnomon.
CCCTC-binding factor, transcript variant X1
CCCTC-binding factor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
CCCTC-binding factor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
CCCTC-binding factor, transcript variant X4
transcriptional repressor CTCF isoform X1
transcriptional repressor CTCF isoform X3
transcriptional repressor CTCF isoform X2
transcriptional repressor CTCF isoform X4
capping protein regulator and myosin 1 linker 2; Derived by automated computational analysis using gene prediction method: Gnomon.
capping protein regulator and myosin 1 linker 2
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: capping protein, Arp2/3 and myosin-I linker protein 2
ACD shelterin complex subunit and telomerase recruitment factor; Derived by automated computational analysis using gene prediction method: Gnomon.
ACD shelterin complex subunit and telomerase recruitment factor
adrenocortical dysplasia protein homolog
alanyl-tRNA synthetase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
exosome component 6; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
C-type lectin domain family 18 member A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
C-type lectin domain family 18 member A-like
fibulin-7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger DHHC-type containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin polymerization promoting protein family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
tubulin polymerization promoting protein family member 3
tubulin polymerization-promoting protein family member 3
glucose-fructose oxidoreductase domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
glucose-fructose oxidoreductase domain containing 2, transcript variant X1
glucose-fructose oxidoreductase domain containing 2, transcript variant X2
glucose-fructose oxidoreductase domain-containing protein 2 isoform X1
glucose-fructose oxidoreductase domain-containing protein 2 isoform X2
enkurin domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
enkurin domain containing 1, transcript variant X1
enkurin domain containing 1, transcript variant X2
enkurin domain-containing protein 1 isoform X1
enkurin domain-containing protein 1 isoform X2
par-6 family cell polarity regulator alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
par-6 family cell polarity regulator alpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
homocysteine inducible ER protein with ubiquitin like domain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
homocysteine inducible ER protein with ubiquitin like domain 1
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein
cholesteryl ester transfer protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
LOW QUALITY PROTEIN: cholesteryl ester transfer protein-like