Indicator indicator isolate 239-I01 chromosome 41, UM_Iind_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Indicatoridae; Indicator.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051121.1.\nAssembly name: UM_Iind_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2023/01/13. The original whole-genome shotgun project\nhas the accession JAQHUL000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: JUN-2022\nAssembly Method :: Flye v. 2.8.1-b1676\nAssembly Name :: UM_Iind_1.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 254.0x\nSequencing Technology :: PacBio CLR\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_027791375.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/15/2023\n##Genome-Annotation-Data-END##
Wnt family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
ADP ribosylation factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
ADP ribosylation factor 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68 Proteins
ADP ribosylation factor 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
FKBP prolyl isomerase 11; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
peptidyl-prolyl cis-trans isomerase FKBP11
coiled-coil domain containing 65; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Rho family GTPase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
DEAD-box helicase 23; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
probable ATP-dependent RNA helicase DDX23
calcium voltage-gated channel auxiliary subunit beta 3; Derived by automated computational analysis using gene prediction method: Gnomon.
calcium voltage-gated channel auxiliary subunit beta 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins
voltage-dependent L-type calcium channel subunit beta-3 isoform X2
calcium voltage-gated channel auxiliary subunit beta 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
voltage-dependent L-type calcium channel subunit beta-3 isoform X1
adenylate cyclase 6; Derived by automated computational analysis using gene prediction method: Gnomon.
adenylate cyclase 6, transcript variant X1
adenylate cyclase 6, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
cyclin T1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
KAT8 regulatory NSL complex subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
small nucleolar RNA SNORA2/SNORA34 family; Derived by automated computational analysis using gene prediction method: cmsearch.
small nucleolar RNA SNORA2/SNORA34 family
COORDINATES: nucleotide motif:Rfam:14.6:RF00410
Derived by automated computational analysis using gene prediction method: cmsearch.
NCK associated protein 5 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transmembrane BAX inhibitor motif containing 6; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane BAX inhibitor motif containing 6, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
transmembrane BAX inhibitor motif containing 6, transcript variant X1
formin like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
autophagy related 101; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
nuclear receptor subfamily 4 group A member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear receptor subfamily 4 group A member 1
trafficking regulator and scaffold protein tamalin; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking regulator and scaffold protein tamalin
activin A receptor type 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
activin A receptor type 1B, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
activin A receptor type 1B, transcript variant X8
activin A receptor type 1B, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
activin A receptor type 1B, transcript variant X4
activin A receptor type 1B, transcript variant X7
activin A receptor type 1B, transcript variant X5
activin A receptor type 1B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83 Proteins
activin A receptor type 1B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 74 Proteins
activin A receptor like type 1; Derived by automated computational analysis using gene prediction method: Gnomon.
activin A receptor like type 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85 Proteins
activin A receptor like type 1, transcript variant X1
activin A receptor like type 1, transcript variant X2
serine/threonine-protein kinase receptor R3 isoform X2
serine/threonine-protein kinase receptor R3 isoform X1
ankyrin repeat domain 33; Derived by automated computational analysis using gene prediction method: Gnomon.
fidgetin like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane and death domain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane and death domain protein 1
sodium voltage-gated channel alpha subunit 8; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium voltage-gated channel alpha subunit 8, transcript variant X1
sodium voltage-gated channel alpha subunit 8, transcript variant X4
sodium voltage-gated channel alpha subunit 8, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
sodium voltage-gated channel alpha subunit 8, transcript variant X5
sodium voltage-gated channel alpha subunit 8, transcript variant X3
sodium channel protein type 8 subunit alpha isoform X1
sodium channel protein type 8 subunit alpha isoform X4
sodium channel protein type 8 subunit alpha isoform X2
sodium channel protein type 8 subunit alpha isoform X5
sodium channel protein type 8 subunit alpha isoform X3
putative methyltransferase-like protein 7A; Derived by automated computational analysis using gene prediction method: Gnomon.
putative methyltransferase-like protein 7A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
transmembrane serine protease 12; Derived by automated computational analysis using gene prediction method: Gnomon.
activating transcription factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
activating transcription factor 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins
activating transcription factor 1, transcript variant X2
cyclic AMP-dependent transcription factor ATF-1 isoform X1
cyclic AMP-dependent transcription factor ATF-1 isoform X2
disco interacting protein 2 homolog B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
La ribonucleoprotein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
La ribonucleoprotein 4, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
La ribonucleoprotein 4, transcript variant X1
La ribonucleoprotein 4, transcript variant X4
La ribonucleoprotein 4, transcript variant X5
La ribonucleoprotein 4, transcript variant X2
bromodomain adjacent to zinc finger domain 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain adjacent to zinc finger domain 2A
bromodomain adjacent to zinc finger domain protein 2A
translation initiation factor IF-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase F1 subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase subunit beta, mitochondrial
small nucleolar RNA SNORD59; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00273
prostaglandin E synthase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
nascent polypeptide associated complex subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
nascent polypeptide associated complex subunit alpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
nascent polypeptide-associated complex subunit alpha
DNA primase subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA primase subunit 1, transcript variant X1
DNA primase subunit 1, transcript variant X2
retinol dehydrogenase 16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 58 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins
G protein-coupled receptor 182; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 39; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 39
zinc finger and BTB domain-containing protein 39
myosin IA; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear envelope integral membrane protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear envelope integral membrane protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
NGFI-A binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 6; Derived by automated computational analysis using gene prediction method: Gnomon.
signal transducer and activator of transcription 6
LDL receptor related protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
prolow-density lipoprotein receptor-related protein 1
neurexophilin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
serine hydroxymethyltransferase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
serine hydroxymethyltransferase, mitochondrial
NDUFA4 mitochondrial complex associated like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
NDUFA4 mitochondrial complex associated like 2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
SH3 and cysteine rich domain 3; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 and cysteine rich domain 3, transcript variant X1
SH3 and cysteine rich domain 3, transcript variant X2
SH3 and cysteine-rich domain-containing protein 3 isoform X1
SH3 and cysteine-rich domain-containing protein 3 isoform X2
R3H domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
R3H domain containing 2, transcript variant X7
R3H domain containing 2, transcript variant X5
R3H domain containing 2, transcript variant X4
R3H domain containing 2, transcript variant X2
R3H domain containing 2, transcript variant X6
R3H domain containing 2, transcript variant X3
R3H domain containing 2, transcript variant X1
R3H domain-containing protein 2 isoform X7
R3H domain-containing protein 2 isoform X5
R3H domain-containing protein 2 isoform X4
R3H domain-containing protein 2 isoform X2
R3H domain-containing protein 2 isoform X6
R3H domain-containing protein 2 isoform X3
R3H domain-containing protein 2 isoform X1
inhibin beta C chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
basic salivary proline-rich protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic salivary proline-rich protein 2-like
GLI family zinc finger 1; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM domain and actin binding 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ceramide synthase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase assembly protein COX14; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase assembly protein COX14
glycerol-3-phosphate dehydrogenase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
glycerol-3-phosphate dehydrogenase 1, transcript variant X2
glycerol-3-phosphate dehydrogenase 1, transcript variant X1
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X2
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, transcript variant X2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, transcript variant X1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
acid sensing ion channel subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
acid sensing ion channel subunit 1, transcript variant X2
acid sensing ion channel subunit 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Rac GTPase activating protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
RNA-binding motif, single-stranded-interacting protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif, single-stranded-interacting protein 2-like
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: RNA-binding motif, single-stranded-interacting protein 2-like
aquaporin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
aquaporin 6; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins
Sp1 transcription factor; Derived by automated computational analysis using gene prediction method: Gnomon.
anti-Mullerian hormone receptor type 2; Derived by automated computational analysis using gene prediction method: Gnomon.
histone deacetylase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
twist-related protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.