Indicator indicator isolate 239-I01 chromosome 40, UM_Iind_1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Indicatoridae; Indicator.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051120.1.\nAssembly name: UM_Iind_1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Brood Parasitic Bird Genomes\nConsortium on 2023/01/13. The original whole-genome shotgun project\nhas the accession JAQHUL000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Brood Parasitic Bird Genomes Consortium\nAssembly Date :: JUN-2022\nAssembly Method :: Flye v. 2.8.1-b1676\nAssembly Name :: UM_Iind_1.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 254.0x\nSequencing Technology :: PacBio CLR\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_027791375.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/15/2023\n##Genome-Annotation-Data-END##
MINDY lysine 48 deubiquitinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
MINDY lysine 48 deubiquitinase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
MINDY lysine 48 deubiquitinase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase MINDY-1
ceramide synthase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
SET domain bifurcated histone lysine methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SET domain bifurcated histone lysine methyltransferase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETDB1
aryl hydrocarbon receptor nuclear translocator; Derived by automated computational analysis using gene prediction method: Gnomon.
aryl hydrocarbon receptor nuclear translocator
zinc finger protein 687; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol 4-kinase beta; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
regulatory factor X5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
methanethiol oxidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
MCL1 apoptosis regulator, BCL2 family member; Derived by automated computational analysis using gene prediction method: Gnomon.
MCL1 apoptosis regulator, BCL2 family member
induced myeloid leukemia cell differentiation protein Mcl-1
endosulfine alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
golgi phosphoprotein 3 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
HORMA domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
KH domain containing 4, pre-mRNA splicing factor; Derived by automated computational analysis using gene prediction method: Gnomon.
KH domain containing 4, pre-mRNA splicing factor
small Cajal body-specific RNA 4; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00423
Derived by automated computational analysis using gene prediction method: cmsearch.
Ras like without CAAX 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
synaptotagmin 11; Derived by automated computational analysis using gene prediction method: Gnomon.
gon-4 like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
misato mitochondrial distribution and morphology regulator 1; Derived by automated computational analysis using gene prediction method: Gnomon.
misato mitochondrial distribution and morphology regulator 1
death associated protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
28S ribosomal protein S29, mitochondrial
ASH1 like histone lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
ASH1 like histone lysine methyltransferase, transcript variant X1
ASH1 like histone lysine methyltransferase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
histone-lysine N-methyltransferase ASH1L isoform X1
histone-lysine N-methyltransferase ASH1L isoform X2
RUN and SH3 domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
farnesyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Gnomon.
hyperpolarization activated cyclic nucleotide gated potassium channel 3; Derived by automated computational analysis using gene prediction method: Gnomon.
hyperpolarization activated cyclic nucleotide gated potassium channel 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
CDC like kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC like kinase 2, transcript variant X1
CDC like kinase 2, transcript variant X2
CDC like kinase 2, transcript variant X3
dual specificity protein kinase CLK2 isoform X1
dual specificity protein kinase CLK2 isoform X2
dual specificity protein kinase CLK2 isoform X3
secretory carrier membrane protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
secretory carrier-associated membrane protein 3
endosomal transmembrane epsin interactor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
endosomal transmembrane epsin interactor 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
lysosomal acid glucosylceramidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
metaxin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
thrombospondin 3; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
mucin 1, cell surface associated; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 46; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 46, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
tripartite motif containing 46, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
tripartite motif-containing protein 46 isoform X2
tripartite motif-containing protein 46 isoform X1
dolichyl-phosphate mannosyltransferase subunit 3, regulatory; Derived by automated computational analysis using gene prediction method: Gnomon.
dolichyl-phosphate mannosyltransferase subunit 3, regulatory
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
dolichol-phosphate mannosyltransferase subunit 3
solute carrier family 50 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128978896; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin-A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin A3; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin-A4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ADAM metallopeptidase domain 15; Derived by automated computational analysis using gene prediction method: Gnomon.
disintegrin and metalloproteinase domain-containing protein 15
DC-STAMP domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DC-STAMP domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 7B; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 7B
zinc finger and BTB domain-containing protein 7B
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
flavin adenine dinucleotide synthetase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
flavin adenine dinucleotide synthetase 1
CDC28 protein kinase regulatory subunit 1B; Derived by automated computational analysis using gene prediction method: Gnomon.
CDC28 protein kinase regulatory subunit 1B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
cyclin-dependent kinases regulatory subunit 1
SHC adaptor protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SHC adaptor protein 1, transcript variant X4
SHC adaptor protein 1, transcript variant X3
SHC adaptor protein 1, transcript variant X1
SHC adaptor protein 1, transcript variant X2
pygopus family PHD finger 2; Derived by automated computational analysis using gene prediction method: Gnomon.
PBX homeobox interacting protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-B-cell leukemia transcription factor-interacting protein 1
phosphomevalonate kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
potassium calcium-activated channel subfamily N member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
potassium calcium-activated channel subfamily N member 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
small conductance calcium-activated potassium channel protein 3
adenosine deaminase RNA specific; Derived by automated computational analysis using gene prediction method: Gnomon.
double-stranded RNA-specific adenosine deaminase
cholinergic receptor nicotinic beta 2 subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
cholinergic receptor nicotinic beta 2 subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 Proteins
neuronal acetylcholine receptor subunit beta-2
ubiquitin conjugating enzyme E2 Q1; Derived by automated computational analysis using gene prediction method: Gnomon.
acidic nuclear phosphoprotein 32 family member E; Derived by automated computational analysis using gene prediction method: Gnomon.
acidic nuclear phosphoprotein 32 family member E, transcript variant X2
acidic nuclear phosphoprotein 32 family member E, transcript variant X12
acidic nuclear phosphoprotein 32 family member E, transcript variant X9
acidic nuclear phosphoprotein 32 family member E, transcript variant X8
acidic nuclear phosphoprotein 32 family member E, transcript variant X3
acidic nuclear phosphoprotein 32 family member E, transcript variant X6
acidic nuclear phosphoprotein 32 family member E, transcript variant X4
acidic nuclear phosphoprotein 32 family member E, transcript variant X1
acidic nuclear phosphoprotein 32 family member E, transcript variant X5
acidic nuclear phosphoprotein 32 family member E, transcript variant X11
acidic nuclear phosphoprotein 32 family member E, transcript variant X7
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X11
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X8
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X7
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X5
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X3
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X4
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X10
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X6
acidic nuclear phosphoprotein 32 family member E, transcript variant X10
acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X9
uncharacterized LOC128978906; Derived by automated computational analysis using gene prediction method: Gnomon.
aph-1 homolog A, gamma-secretase subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
aph-1 homolog A, gamma-secretase subunit
carbonic anhydrase 14; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein S21, transcript variant X1
mitochondrial ribosomal protein S21, transcript variant X2
28S ribosomal protein S21, mitochondrial
pre-mRNA processing factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-mRNA processing factor 3, transcript variant X1
pre-mRNA processing factor 3, transcript variant X2
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X2
regulation of nuclear pre-mRNA domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
regulation of nuclear pre-mRNA domain containing 2, transcript variant X1
regulation of nuclear pre-mRNA domain containing 2, transcript variant X3
regulation of nuclear pre-mRNA domain containing 2, transcript variant X2
regulation of nuclear pre-mRNA domain containing 2, transcript variant X4
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X1
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X3
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X2
regulation of nuclear pre-mRNA domain-containing protein 2 isoform X4
threonyl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
threonyl-tRNA synthetase 2, mitochondrial
extracellular matrix protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SNAP associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin enhancer binding factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
natriuretic peptide receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
integrator complex subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 27 member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 3
GATA zinc finger domain containing 2B; Derived by automated computational analysis using gene prediction method: Gnomon.
DENN domain containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
CREB regulated transcription coactivator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
CREB regulated transcription coactivator 2
CREB-regulated transcription coactivator 2
solute carrier family 39 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
jumping translocation breakpoint; Derived by automated computational analysis using gene prediction method: Gnomon.
RAB13, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86 Proteins
ribosomal protein S27; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins
mothers against decapentaplegic homolog 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
chromatin target of PRMT1; Derived by automated computational analysis using gene prediction method: Gnomon.
chromatin target of PRMT1, transcript variant X2
chromatin target of PRMT1, transcript variant X1
chromatin target of PRMT1, transcript variant X4
chromatin target of PRMT1, transcript variant X3
chromatin target of PRMT1 protein isoform X2
chromatin target of PRMT1 protein isoform X1
chromatin target of PRMT1 protein isoform X3
S100 calcium binding protein A1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
S100 calcium binding protein A13; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A14; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A16; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein S100-A12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
S100 calcium binding protein A7; Derived by automated computational analysis using gene prediction method: Gnomon.
loricrin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratinocyte proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin-associated protein 5-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sperm mitochondrial-associated cysteine-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sperm mitochondrial-associated cysteine-rich protein-like
keratin, type I cytoskeletal 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
claw keratin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins