Plasmodium reichenowi strain SY57 chromosome 8, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).

Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria

Submitted (10-FEB-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA

PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003849.\nAssembly created using Velvet Columbus followed by PAGIT and\nGapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; PAGIT v. 1; GapFiller v.\n 1.11\nGenome Coverage :: 200x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##

conserved Plasmodium protein, unknown function

rRNA processing WD-repeat protein, putative

gap found within coding sequence; ortholog of PRCDC_0802200

part of same gene as PRSY57_0802200B, PRSY57_0802200C; gap found within coding sequence

part of same gene as PRSY57_0802200A, PRSY57_0802200C; gap found within coding sequence

part of same gene as PRSY57_0802200A, PRSY57_0802200B; gap found within coding sequence

gap found within coding sequence; ortholog of PRCDC_0802300

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0802300B; gap found within coding sequence

Short protein (PRSY57_0802300, KYN99132.1) was converted to a misc_feature.

serine/threonine protein phosphatase 2B catalytic subunit A, putative

mitogen-activated protein kinase organizer 1, putative

proteasome subunit beta type-4, putative

conserved Plasmodium membrane protein, unknown function

U2 snRNA/tRNA pseudouridine synthase, putative

serine/threonine protein kinase, FIKK family

glycosyltransferase family 28 protein, putative

vacuolar proton translocating ATPase subunit A, putative

gap found within coding sequence; ortholog of PRCDC_0806600

part of same gene as PRSY57_0806600B; gap found within coding sequence

part of same gene as PRSY57_0806600A; gap found within coding sequence

proteasome subunit alpha type-6, putative

26S proteasome regulatory subunit RPN10, putative

ortholog of PRCDC_0808600; annotated by similarity to unknown transcript annotated in PrCDC

unknown; annotated by similarity to unknown transcript annotated in PrCDC

histone acetyltransferase subunit NuA4, putative

encoded by transcript variant 1; alternatively spliced

conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced

encoded by transcript variant 2; alternatively spliced

conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced

conserved protein, unknown function; ortholog of PRCDC_0810500; may be nonfunctional due to frameshift

coactivator-associated arginine methyltransferase 1

gap found within coding sequence; ortholog of PRCDC_0811200

part of same gene as PRSY57_0811200B; gap found within coding sequence

part of same gene as PRSY57_0811200A; gap found within coding sequence

RNA-binding protein (U1 snRNP-like), putative

translation initiation factor SUI1, putative

DNA/RNA-binding protein Alba 1, putative

Contains in-frame UGA selenocysteine codon

eukaryotic translation initiation factor, putative

vacuolar protein sorting-associated protein 9, putative

nucleolar preribosomal assembly protein, putative

vacuolar protein sorting-associated protein 2, putative

gap found within coding sequence; ortholog of PRCDC_0815600

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0815600A; gap found within coding sequence

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0815600B; gap found within coding sequence

small heat shock protein HSP20, putative

trafficking protein particle complex subunit 2- like protein, putative

gap found within coding sequence; ortholog of PRCDC_0816100

meiotic recombination protein DMC1, putative

part of same gene as PRSY57_0816100A; gap found within coding sequence

part of same gene as PRSY57_0816100B; gap found within coding sequence

gap found within coding sequence; ortholog of PRCDC_0816800

protein kinase c inhibitor-like protein, putative

part of same gene as PRSY57_0816800B; gap found within coding sequence

part of same gene as PRSY57_0816800A; gap found within coding sequence

gap found within coding sequence; ortholog of PRCDC_0817900

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0817900A; gap found within coding sequence

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0817900B; gap found within coding sequence

U3 small nucleolar ribonucleoprotein, putative

gap found within coding sequence; ortholog of PRCDC_0819100

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0819100A; gap found within coding sequence

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0819100B; gap found within coding sequence

U6 snRNA-associated Sm-like protein LSm3, putative

2-oxoglutarate dehydrogenase E1 component

gap found within coding sequence; ortholog of PRCDC_0820600

ATP-dependent RNA helicase prh1, putative

part of same gene as PRSY57_0820600A; gap found within coding sequence

part of same gene as PRSY57_0820600B; gap found within coding sequence

ribosomal RNA small subunit methyltransferase NEP1, putative

protein transport protein SEC61 subunit beta, putative

mitochondrial ribosomal protein L4 precursor, putative

mediator of RNA polymerase II transcription subunit 7, putative

small nuclear ribonucleoprotein G, putative

gap found within coding sequence; ortholog of PRCDC_0821700

conserved Plasmodium protein, unknown function; part of same gene as PRSY57_0821700B; gap found within coding sequence

Short protein (PRSY57_0821700, KYN99314.1) was converted to a misc_feature.

membrane skeletal protein IMC1-like protein

dicarboxylate/tricarboxylate carrier, putative

translation initiation factor IF-3, putative

cytochrome c oxidase assembly protein, putative

dehydrodolichyl diphosphate synthetase, putative

ubiquitin conjugation factor E4 B, putative
ATP-dependent RNA helicase DBP10, putative
translation initiation factor IF-2, putative
hypothetical protein; ortholog of PRCDC_0826600; may be nonfunctional due to frameshift
apicoplast ribosomal protein L21 precursor, putative
mitochondrial inner membrane protein OXA1, putative
translation initiation factor EIF-2b alpha subunit, putative
U6 snRNA-associated Sm-like protein LSm8, putative
prolyl 4-hydroxylase subunit alpha, putative
exported protein (PHISTa); ortholog of PRCDC_0831000
gap found within coding sequence; ortholog of PRCDC_0831100
part of same gene as PRSY57_0831100A; gap found within coding sequence
part of same gene as PRSY57_0831100B; gap found within coding sequence