Haloferax mediterranei ATCC 33500 plasmid pHME132, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.

Methylomes of Two Extremely Halophilic Archaea Species, Haloarcula marismortui and Haloferax mediterranei
Microbiol Resour Announc 8 (27), e00577-19 (2019)

Submitted (07-APR-2019) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA

REFSEQ INFORMATION: The reference sequence is identical to\nCP039142.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. April-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 475.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/13/2022 22:22:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,920\nCDSs (total) :: 3,855\nGenes (coding) :: 3,785\nCDSs (with protein) :: 3,785\nGenes (RNA) :: 65\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 2\nPseudo Genes (total) :: 70\nCDSs (without protein) :: 70\nPseudo Genes (ambiguous residues) :: 0 of 70\nPseudo Genes (frameshifted) :: 37 of 70\nPseudo Genes (incomplete) :: 48 of 70\nPseudo Genes (internal stop) :: 22 of 70\nPseudo Genes (multiple problems) :: 28 of 70\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

COORDINATES: similar to AA sequence:RefSeq:WP_012941322.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_004061493.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system VapC family toxin

COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_004971387.1
SWIM zinc finger domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_004048599.1

COORDINATES: similar to AA sequence:RefSeq:WP_009488186.1
winged helix-turn-helix domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_006065507.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transcription initiation factor IIB family protein

COORDINATES: similar to AA sequence:RefSeq:WP_004060588.1

COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.

COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin

COORDINATES: similar to AA sequence:RefSeq:WP_004043162.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
sugar-specific transcriptional regulator TrmB

COORDINATES: similar to AA sequence:RefSeq:WP_004060584.1

COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060582.1
GO:0004803 - transposase activity [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_004968193.1
GO:0015074 - DNA integration [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_004060577.1

COORDINATES: protein motif:HMM:NF024753.2

COORDINATES: similar to AA sequence:RefSeq:WP_004595756.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_076611240.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_011223694.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_004060569.1

COORDINATES: similar to AA sequence:RefSeq:WP_006168512.1

COORDINATES: similar to AA sequence:RefSeq:WP_004040813.1

COORDINATES: similar to AA sequence:RefSeq:WP_007276452.1

COORDINATES: similar to AA sequence:RefSeq:WP_008365980.1

COORDINATES: similar to AA sequence:RefSeq:WP_004595175.1
rhodanese-like domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_004060563.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060562.1

COORDINATES: similar to AA sequence:RefSeq:WP_006649717.1
GO:0016491 - oxidoreductase activity [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_004060559.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060558.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060557.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060554.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_004060552.1

COORDINATES: similar to AA sequence:RefSeq:WP_006110281.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060546.1

COORDINATES: similar to AA sequence:RefSeq:WP_006054559.1
SCP2 sterol-binding domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_006054558.1
zinc-dependent alcohol dehydrogenase family protein

COORDINATES: similar to AA sequence:RefSeq:WP_004060539.1

COORDINATES: similar to AA sequence:RefSeq:WP_006054556.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060537.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060536.1

COORDINATES: similar to AA sequence:RefSeq:WP_006054554.1

internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_004060530.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060529.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060528.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060527.1

COORDINATES: similar to AA sequence:RefSeq:WP_014863212.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_004063170.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060523.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060522.1

COORDINATES: similar to AA sequence:RefSeq:WP_007276463.1
GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_008579076.1

COORDINATES: similar to AA sequence:RefSeq:WP_008573149.1
ABC transporter substrate-binding protein

COORDINATES: similar to AA sequence:RefSeq:WP_004968525.1

COORDINATES: similar to AA sequence:RefSeq:WP_008096975.1

COORDINATES: similar to AA sequence:RefSeq:WP_008609280.1

COORDINATES: similar to AA sequence:RefSeq:WP_004041077.1

COORDINATES: similar to AA sequence:RefSeq:WP_006600003.1

COORDINATES: similar to AA sequence:RefSeq:WP_004041079.1
hydantoinase/oxoprolinase family protein

COORDINATES: similar to AA sequence:RefSeq:WP_008573139.1

COORDINATES: similar to AA sequence:RefSeq:WP_008096994.1

COORDINATES: similar to AA sequence:RefSeq:WP_004041082.1
Lrp/AsnC family transcriptional regulator

COORDINATES: similar to AA sequence:RefSeq:WP_004060506.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060505.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060504.1

COORDINATES: protein motif:HMM:NF024109.2

COORDINATES: similar to AA sequence:RefSeq:WP_004060502.1

integrase core domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_004060501.1
L-2-amino-thiazoline-4-carboxylic acid hydrolase

COORDINATES: similar to AA sequence:RefSeq:WP_004060500.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060499.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060497.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060496.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060495.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060494.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060493.1

incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_007140167.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_004056203.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060491.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060490.1
nucleotidyltransferase domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_008319284.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060487.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060486.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060484.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060483.1

COORDINATES: protein motif:HMM:NF025779.2

COORDINATES: similar to AA sequence:RefSeq:WP_004060479.1

internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: protein motif:HMM:NF024212.2

COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1

COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1

COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1

COORDINATES: similar to AA sequence:RefSeq:WP_009488258.1

COORDINATES: similar to AA sequence:RefSeq:WP_006186969.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060471.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060470.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060468.1
GO:0006812 - cation transport [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_004060466.1

COORDINATES: similar to AA sequence:RefSeq:WP_009367660.1

COORDINATES: similar to AA sequence:RefSeq:WP_006186970.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060460.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060458.1

COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060450.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060449.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060448.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060447.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060446.1

COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1

COORDINATES: similar to AA sequence:RefSeq:WP_006600170.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1

COORDINATES: similar to AA sequence:RefSeq:WP_009733116.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060439.1
type II toxin-antitoxin system PemK/MazF family toxin

COORDINATES: similar to AA sequence:RefSeq:WP_006066879.1

COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1

COORDINATES: similar to AA sequence:RefSeq:WP_006600164.1

COORDINATES: similar to AA sequence:RefSeq:WP_004061483.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060435.1

COORDINATES: similar to AA sequence:RefSeq:WP_008385895.1

COORDINATES: similar to AA sequence:RefSeq:WP_004599624.1

COORDINATES: similar to AA sequence:RefSeq:WP_015762025.1

COORDINATES: similar to AA sequence:RefSeq:WP_005532717.1

COORDINATES: similar to AA sequence:RefSeq:WP_004060597.1