Citrobacter tructae strain SNU WT2 plasmid unnamed1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter.

Complete genome sequence of Citrobacter sp. SNU WT2 isolated from diseased rainbow trout

Submitted (31-MAR-2019) Department of Veterinary medicine, Seoul National University, Bldg. # 81, Room #421 Lab of Aquatic Biomedicine College of Veterinary Medicine, Seoul National Univ, Seoul, Korea, Republic Of 06363, Korea, Republic of

REFSEQ INFORMATION: The reference sequence is identical to\nCP038468.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 81.2x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2022 03:23:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.0\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,688\nCDSs (total) :: 4,572\nGenes (coding) :: 4,483\nCDSs (with protein) :: 4,483\nGenes (RNA) :: 116\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 7\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 39 of 89\nPseudo Genes (incomplete) :: 65 of 89\nPseudo Genes (internal stop) :: 15 of 89\nPseudo Genes (multiple problems) :: 27 of 89\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

COORDINATES: similar to AA sequence:RefSeq:WP_000842452.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_001542523.1
Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_001597012.1

COORDINATES: similar to AA sequence:RefSeq:WP_000646094.1
type IV secretory system conjugative DNA transfer family protein

COORDINATES: similar to AA sequence:RefSeq:WP_001079808.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_003557916.1

COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.

COORDINATES: similar to AA sequence:RefSeq:WP_000486834.1

COORDINATES: similar to AA sequence:RefSeq:WP_000744278.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: similar to AA sequence:RefSeq:WP_016499931.1

COORDINATES: similar to AA sequence:RefSeq:WP_001499587.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV

COORDINATES: protein motif:HMM:NF013632.2

COORDINATES: similar to AA sequence:RefSeq:WP_001774171.1
lytic transglycosylase domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_000908226.1

COORDINATES: similar to AA sequence:RefSeq:WP_001699973.1
type II secretion system F family protein

COORDINATES: similar to AA sequence:RefSeq:WP_000362204.1
Flp pilus assembly complex ATPase component TadA

COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]

COORDINATES: protein motif:HMM:NF018562.2

COORDINATES: similar to AA sequence:RefSeq:WP_001744074.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
PilN family type IVB pilus formation outer membrane protein

COORDINATES: similar to AA sequence:RefSeq:WP_001744073.1

COORDINATES: similar to AA sequence:RefSeq:WP_001360287.1

COORDINATES: similar to AA sequence:RefSeq:WP_001303319.1

COORDINATES: protein motif:HMM:NF019886.2
sigma-70 family RNA polymerase sigma factor

COORDINATES: similar to AA sequence:RefSeq:WP_006122473.1
RepA; Derived by automated computational analysis using gene prediction method: Protein Homology.

COORDINATES: protein motif:HMM:NF012774.2

COORDINATES: similar to AA sequence:RefSeq:WP_076611787.1

COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1

COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO:0004803 - transposase activity [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_032492145.1
aminoglycoside O-phosphotransferase APH(3')-Ia

IS6-like element IS26 family transposase

COORDINATES: similar to AA sequence:RefSeq:WP_001138064.1

COORDINATES: similar to AA sequence:RefSeq:WP_000954590.1
Arm DNA-binding domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2

COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib

COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id

COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1

COORDINATES: similar to AA sequence:RefSeq:WP_001255015.1

COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR

COORDINATES: protein motif:HMM:NF023271.2

COORDINATES: similar to AA sequence:RefSeq:WP_000743213.1

COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1

COORDINATES: similar to AA sequence:RefSeq:WP_000113092.1
tetracycline resistance transcriptional repressor TetR(D)

COORDINATES: similar to AA sequence:RefSeq:WP_001039466.1
tetracycline efflux MFS transporter Tet(D)

COORDINATES: similar to AA sequence:RefSeq:NP_308438.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

COORDINATES: similar to AA sequence:RefSeq:WP_000425438.1

COORDINATES: similar to AA sequence:RefSeq:WP_001549890.1
helix-turn-helix domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_004206893.1

COORDINATES: similar to AA sequence:RefSeq:WP_011906493.1

COORDINATES: similar to AA sequence:RefSeq:WP_000343099.1

COORDINATES: similar to AA sequence:RefSeq:WP_019843181.1

COORDINATES: similar to AA sequence:RefSeq:WP_005933773.1

COORDINATES: similar to AA sequence:RefSeq:WP_016193196.1

COORDINATES: similar to AA sequence:RefSeq:WP_001505082.1

COORDINATES: similar to AA sequence:RefSeq:WP_020801683.1
plasmid partitioning/stability family protein

COORDINATES: similar to AA sequence:RefSeq:WP_000457545.1

COORDINATES: similar to AA sequence:RefSeq:WP_008455414.1
translesion error-prone DNA polymerase V autoproteolytic subunit

COORDINATES: similar to AA sequence:RefSeq:NP_490546.1

COORDINATES: similar to AA sequence:RefSeq:WP_008322842.1

COORDINATES: similar to AA sequence:RefSeq:WP_020314633.1

COORDINATES: similar to AA sequence:RefSeq:WP_013578318.1

COORDINATES: similar to AA sequence:RefSeq:WP_001750289.1

COORDINATES: similar to AA sequence:RefSeq:WP_001485380.1
ParB/RepB/Spo0J family partition protein

COORDINATES: protein motif:HMM:NF010255.1

COORDINATES: similar to AA sequence:RefSeq:WP_000613062.1

COORDINATES: similar to AA sequence:RefSeq:WP_016589766.1

COORDINATES: protein motif:HMM:NF036604.2

COORDINATES: similar to AA sequence:RefSeq:NP_052660.1
type I toxin-antitoxin system Hok family toxin

COORDINATES: similar to AA sequence:RefSeq:WP_004152749.1

COORDINATES: similar to AA sequence:RefSeq:WP_000080850.1
GO:0006306 - DNA methylation [Evidence IEA]

COORDINATES: similar to AA sequence:RefSeq:WP_004131746.1

COORDINATES: similar to AA sequence:RefSeq:WP_017900696.1

COORDINATES: similar to AA sequence:RefSeq:WP_000148350.1
helix-turn-helix transcriptional regulator

COORDINATES: similar to AA sequence:RefSeq:WP_001403164.1

COORDINATES: protein motif:HMM:NF039307.1

COORDINATES: similar to AA sequence:RefSeq:WP_000113358.1

COORDINATES: similar to AA sequence:RefSeq:WP_015873526.1

COORDINATES: similar to AA sequence:RefSeq:WP_001281049.1

COORDINATES: similar to AA sequence:RefSeq:WP_001387486.1
relaxase/mobilization nuclease domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_006319061.1

COORDINATES: similar to AA sequence:RefSeq:WP_000077650.1
TraM recognition domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_000817271.1
RNA-guided endonuclease TnpB family protein

COORDINATES: protein motif:HMM:NF024498.2
thioredoxin fold domain-containing protein

COORDINATES: similar to AA sequence:RefSeq:WP_000121273.1

COORDINATES: protein motif:HMM:NF033891.1
plasmid IncI1-type surface exclusion protein ExcA

COORDINATES: similar to AA sequence:RefSeq:WP_000698353.1

COORDINATES: protein motif:HMM:NF033887.1

COORDINATES: similar to AA sequence:RefSeq:WP_001387490.1

COORDINATES: similar to AA sequence:RefSeq:WP_001024789.1

COORDINATES: similar to AA sequence:RefSeq:WP_001542519.1

COORDINATES: similar to AA sequence:RefSeq:WP_001090608.1

COORDINATES: protein motif:HMM:NF033885.1

COORDINATES: protein motif:HMM:NF033884.1

COORDINATES: similar to AA sequence:RefSeq:WP_001191879.1

COORDINATES: similar to AA sequence:RefSeq:WP_001838509.1
DotI/IcmL family type IV secretion protein

COORDINATES: similar to AA sequence:RefSeq:WP_001629514.1

COORDINATES: protein motif:HMM:NF037421.2