Melopsittacus undulatus isolate bMelUnd1 chromosome 26, bMelUnd1.mat.Z, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM022657.1.\nAssembly name: bMelUnd1.mat.Z\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the G10K on 2020/04/13. The\noriginal whole-genome shotgun project has the accession\nJAAVWG000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: G10K\nAssembly Date :: 24-FEB-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; Freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-02-24; VGP assembly\n pipeline v. 1.6\nAssembly Name :: bMelUnd1.mat.Z\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.11x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Melopsittacus undulatus Annotation\n Release 104\nAnnotation Version :: 104\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.4\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

Derived by automated computational analysis using gene prediction method: Gnomon.

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 80% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

kallikrein-13-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns

kallikrein-13-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns

kallikrein-13-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns

kallikrein-13-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns

glandular kallikrein-3, submandibular-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments

transmembrane immune signaling adaptor TYROBP
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns

TYRO protein tyrosine kinase-binding protein

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments

lin-37 DREAM MuvB core complex component
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

persulfide dioxygenase ETHE1, mitochondrial

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments

sushi, nidogen and EGF-like domain-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins

FXYD domain containing ion transport regulator 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns

FXYD domain-containing ion transport regulator 3

leucine-rich glioma-inactivated protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

sodium voltage-gated channel beta subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns

proteasome 26S subunit, ATPase 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns

proteasome 26S subunit, ATPase 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns

26S proteasome regulatory subunit 6B isoform X2

26S proteasome regulatory subunit 6B isoform X1

proteasome 26S subunit, ATPase 4, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

proteasome 26S subunit, ATPase 4, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

26S proteasome regulatory subunit 6B isoform X5

26S proteasome regulatory subunit 6B isoform X3

proteasome 26S subunit, ATPase 4, transcript variant X6

proteasome 26S subunit, ATPase 4, transcript variant X4

26S proteasome regulatory subunit 6B isoform X6

26S proteasome regulatory subunit 6B isoform X4

presenilin enhancer, gamma-secretase subunit

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 95% coverage of the annotated genomic feature by RNAseq alignments

histone-lysine N-methyltransferase 2B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns

ETS domain-containing transcription factor ERF-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments

ATPase Na+/K+ transporting subunit alpha 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 14 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments

sodium/potassium-transporting ATPase subunit alpha-3

glutamate ionotropic receptor kainate type subunit 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments

glutamate receptor ionotropic, kainate 5

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments

POU domain, class 2, transcription factor 2

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments

potassium-transporting ATPase alpha chain 1

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments

lipolysis-stimulated lipoprotein receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments

upstream transcription factor 2, c-fos interacting
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

electron transfer flavoprotein subunit beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns

protein phosphatase 2 scaffold subunit Aalpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 105 ESTs, 13 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments

serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform

SMG9 nonsense mediated mRNA decay factor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns

Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X12

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X7

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X15

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X9

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X2

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X13

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X3

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X18

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X8

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X20

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X21

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X16

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X11

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X6

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X19

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X24

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X5

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X22

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X1

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X17

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X23

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X4

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X10

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X7

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X15

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X9

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X2

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X13

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X3

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X18

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X8

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X20

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X14

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X21

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X16

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X11

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X6

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X19

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X24

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X5

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X22

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X17

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X12

nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X23

Rho guanine nucleotide exchange factor 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments