NC_012920.1
type: Entry
definition: Homo sapiens mitochondrion, complete genome.
comment: Homo sapiens mitochondrion, complete genome.
sequence version: NC_012920.1
sequence date: 2014-10-31
sequence: sequence
division: PRI
type: RefSeq
SIO_000068: refseq
dblink: PRJNA30353
keyword: RefSeq
source: mitochondrion Homo sapiens (human)
organism: Homo sapiens
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
reference: reference.1
reference: reference.2
reference: reference.3
reference: reference.4
reference: reference.5
reference: reference.6
reference: reference.7
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from J01415.\nOn Jul 8, 2009 this sequence version replaced gi:115315570.\nThis sequence is a corrected version of the HUMMTCG reference\nsequence. The original Cambridge reference sequence (CRS) is\npreserved as GenBank J01415 gi:337188 [PMID:7219534]. Corrections\nhave been made and annotated per the re-sequencing of the original\nmaterial by Andrews et al [PMID:10508508].\n\nThis Revised Cambridge Reference Sequence (rCRS) has eighteen\nspecific corrections or confirmations of the original 1981 sequence\nof Anderson et al [PMID:7219534]. Seven nucleotides are confirmed\nas rare polymorphisms, maintained as: 263A, 311C-315C, 750A, 1438A,\n4769A, 8860A, and 15326A. Eleven nucleotides are error\ncorrections: 3107del, 3423T, 4985A, 9559C, 11335C, 13702C, 14199T,\n14272C, 14365C, 14368C, and 14766C. These 11 errors in the\noriginal Cambridge sequence were determined to be either outright\nsequencing errors (8 instances) or due to the presence of bovine\nDNA (2 instances) or HeLa DNA (1 instance) mixed in with the\noriginal human placental DNA [PMID:10508508]. HISTORICAL\nNUCLEOTIDE NUMBERS ARE MAINTAINED by indicating 3107del as 'N'.\nA summary table of the reanalysis data is available online at\nhttp://www.mitomap.org/MITOMAP/CambridgeReanalysis\n\nL-strand is shown.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16569
topology: circular
so has quality: SO_0000988
location: 1..16569
location: region:1-16569:1
RO_0002162: 9606

NC_012920
type: RefSeq
SIO_000068: refseq

PRJNA30353
type: BioProject
SIO_000068: bioproject

reference.1
SIO_000300: 1
title: Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
author: Andrews, R.M.
author: Kubacka, I.
author: Chinnery, P.F.
author: Lightowlers, R.N.
author: Turnbull, D.M.
author: Howell, N.
journal: Nat. Genet. 23 (2), 147 (1999)
pubmed: 10508508

10508508
type: PubMed
SIO_000068: pubmed

reference.2
SIO_000300: 2
title: Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
author: Andrews, R.M.
author: Kubacka, I.
author: Chinnery, P.F.
author: Lightowlers, R.N.
author: Turnbull, D.M.
author: Howell, N.
journal: Nat. Genet. 23 (2), 147 (1999)
pubmed: 10508508

reference.3
SIO_000300: 3
title: Sequence and organization of the human mitochondrial genome
author: Anderson, S.
author: Bankier, A.T.
author: Barrell, B.G.
author: de Bruijn, M.H.
author: Coulson, A.R.
author: Drouin, J.
author: Eperon, I.C.
author: Nierlich, D.P.
author: Roe, B.A.
author: Sanger, F.
author: Schreier, P.H.
author: Smith, A.J.
author: Staden, R.
author: Young, I.G.
journal: Nature
volume: 290
issue: 5806
pages: 457-465
year: 1981
pubmed: 7219534

7219534
type: PubMed
SIO_000068: pubmed

reference.4
SIO_000300: 4
title: Sequence and organization of the human mitochondrial genome
author: Anderson, S.
author: Bankier, A.T.
author: Barrell, B.G.
author: de Bruijn, M.H.
author: Coulson, A.R.
author: Drouin, J.
author: Eperon, I.C.
author: Nierlich, D.P.
author: Roe, B.A.
author: Sanger, F.
author: Schreier, P.H.
author: Smith, A.J.
author: Staden, R.
author: Young, I.G.
journal: Nature
volume: 290
issue: 5806
pages: 457-465
year: 1981
pubmed: 7219534

reference.5
SIO_000300: 5
title: Direct Submission
journal: Submitted (08-JUL-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

reference.6
SIO_000300: 6
title: Direct Submission
author: Kogelnik, A.M.
author: Lott, M.T.
journal: Submitted (24-AUG-2006) Mitomap.org, Center for Molecular and Mitochondrial Medicine and Genetics (MAMMAG) University of California, University of California, Irvine, Irvine, CA 92697-3940, USA
comments: Sequence update by submitter

reference.7
SIO_000300: 7
title: Direct Submission
author: Kogelnik, A.M.
author: Lott, M.T.
journal: Submitted (18-APR-1997) Center for Molecular Medicine, Emory University School of Medicine, 1462 Clifton Road, Suite 420, Atlanta, GA 30322, USA
comments: sequence updated

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16569:1
position: 16569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16569:1:source
so part of: sequence
organism: Homo sapiens
organelle: mitochondrion
mol type: genomic DNA
isolation source: caucasian
tissue type: placenta
country: United Kingdom: Great Britain
note: this is the rCRS

9606
type: Taxonomy
SIO_000068: taxonomy

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 9606
so part of: sequence
location: complement(join(16024..16569,1..576))
location: region:1-16569:-1
so has part: feature:1-576:-1:region
so has part: feature:16024-16569:-1:region

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16569:-1
position: 16569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-576:-1:region

position:576:-1
position: 576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16024-16569:-1:region

position:16024:-1
position: 16024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRNF
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
gene: TRNF
nomenclature: Official Symbol: MT-TF | Name: mitochondrially encoded tRNA phenylalanine | Provided by: HGNC:HGNC:7481
so part of: sequence
location: 577..647
location: region:577-647:1
so has part: feature:577-647:1:exon
subclass of: SO_0000663

4558
type: Gene
SIO_000068: ncbigene

HGNC:7481
type: HGNC
SIO_000068: hgnc

590070
type: OMIM
SIO_000068: omim

position:577:1
position: 577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:647:1
position: 647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:577-647:1:exon

TRNF
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
gene: TRNF
product: tRNA-Phe
note: NAR: 1455
anticodon: (pos:611..613,aa:Phe,seq:gaa)
codon recognized: UUC
SIO_010081: TRNF
subclass of: SO_0000673
so part of: TRNF
location: 577..647
location: region:577-647:1
so has part: feature:577-647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:577-647:1:exon

RNR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTRNR1
gene: RNR1
gene synonym: MTRNR1
nomenclature: Official Symbol: MT-RNR1 | Name: mitochondrially encoded 12S RNA | Provided by: HGNC:HGNC:7470
so part of: sequence
location: 648..1601
location: region:648-1601:1
so has part: feature:648-1601:1:exon
subclass of: SO_0000573

4549
type: Gene
SIO_000068: ncbigene

HGNC:7470
type: HGNC
SIO_000068: hgnc

561000
type: OMIM
SIO_000068: omim

position:648:1
position: 648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1601:1
position: 1601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:648-1601:1:exon

RNR1
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 9606
alternative label: MTRNR1
gene: RNR1
gene synonym: MTRNR1
product: s-rRNA
note: 12S rRNA; 12S ribosomal RNA
SIO_010081: RNR1
subclass of: SO_0000673
so part of: RNR1
location: 648..1601
location: region:648-1601:1
so has part: feature:648-1601:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:648-1601:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC316374P5
so part of: sequence
location: 1478..2187
location: region:1478-2187:1
so has part: feature:1478-2187:1:region

272966
type: UniSTS
SIO_000068: unists

position:1478:1
position: 1478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2187:1
position: 2187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1478-2187:1:region

TRNV
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTV
gene: TRNV
gene synonym: MTTV
nomenclature: Official Symbol: MT-TV | Name: mitochondrially encoded tRNA valine | Provided by: HGNC:HGNC:7500
so part of: sequence
location: 1602..1670
location: region:1602-1670:1
so has part: feature:1602-1670:1:exon
subclass of: SO_0000663

4577
type: Gene
SIO_000068: ncbigene

HGNC:7500
type: HGNC
SIO_000068: hgnc

590105
type: OMIM
SIO_000068: omim

position:1602:1
position: 1602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1670:1
position: 1670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1602-1670:1:exon

TRNV
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTV
gene: TRNV
gene synonym: MTTV
product: tRNA-Val
note: NAR: 2053
anticodon: (pos:1633..1635,aa:Val,seq:tac)
codon recognized: GUA
SIO_010081: TRNV
subclass of: SO_0000673
so part of: TRNV
location: 1602..1670
location: region:1602-1670:1
so has part: feature:1602-1670:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1602-1670:1:exon

RNR2
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTRNR2
gene: RNR2
gene synonym: MTRNR2
nomenclature: Official Symbol: MT-RNR2 | Name: mitochondrially encoded 16S RNA | Provided by: HGNC:HGNC:7471
so part of: sequence
location: 1671..3229
location: region:1671-3229:1
so has part: feature:1671-3229:1:exon
subclass of: SO_0000573

4550
type: Gene
SIO_000068: ncbigene

HGNC:7471
type: HGNC
SIO_000068: hgnc

561010
type: OMIM
SIO_000068: omim

position:1671:1
position: 1671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3229:1
position: 3229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1671-3229:1:exon

RNR2
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 9606
alternative label: MTRNR2
gene: RNR2
gene synonym: MTRNR2
product: l-rRNA
note: 16S ribosomal RNA; 16S rRNA
SIO_010081: RNR2
subclass of: SO_0000673
so part of: RNR2
location: 1671..3229
location: region:1671-3229:1
so has part: feature:1671-3229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1671-3229:1:exon

RNR2
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTRNR2
gene: RNR2
gene synonym: MTRNR2
standard name: D3S2893E
SIO_010081: RNR2
subclass of: SO_0000673
so part of: RNR2
location: 2062..2203
location: region:2062-2203:1
so has part: feature:2062-2203:1:exon

150884
type: UniSTS
SIO_000068: unists

position:2062:1
position: 2062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2203:1
position: 2203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2062-2203:1:exon

RNR2
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTRNR2
gene: RNR2
gene synonym: MTRNR2
standard name: NIB250
SIO_010081: RNR2
subclass of: SO_0000673
so part of: RNR2
location: 2712..2884
location: region:2712-2884:1
so has part: feature:2712-2884:1:exon

56529
type: UniSTS
SIO_000068: unists

position:2712:1
position: 2712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2884:1
position: 2884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2712-2884:1:exon

RNR2
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTRNR2
gene: RNR2
gene synonym: MTRNR2
standard name: PMC31832P1
SIO_010081: RNR2
subclass of: SO_0000673
so part of: RNR2
location: 2806..2946
location: region:2806-2946:1
so has part: feature:2806-2946:1:exon

273091
type: UniSTS
SIO_000068: unists

position:2806:1
position: 2806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2946:1
position: 2946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2806-2946:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 9606
note: preserves historical genome annotation numbering
so part of: sequence
location: 3107
location: region:3107-3107:1
so has part: feature:3107-3107:1:region

position:3107:1
position: 3107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3107-3107:1:region

TRNL1
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTL1
gene: TRNL1
gene synonym: MTTL1
nomenclature: Official Symbol: MT-TL1 | Name: mitochondrially encoded tRNA leucine 1 (UUA/G) | Provided by: HGNC:HGNC:7490
so part of: sequence
location: 3230..3304
location: region:3230-3304:1
so has part: feature:3230-3304:1:exon
subclass of: SO_0000663

4567
type: Gene
SIO_000068: ncbigene

HGNC:7490
type: HGNC
SIO_000068: hgnc

590050
type: OMIM
SIO_000068: omim

position:3230:1
position: 3230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3304:1
position: 3304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3230-3304:1:exon

TRNL1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTL1
gene: TRNL1
gene synonym: MTTL1
product: tRNA-Leu
note: NAR: 1054
anticodon: (pos:3265..3267,aa:Leu,seq:taa)
codon recognized: UUR
SIO_010081: TRNL1
subclass of: SO_0000673
so part of: TRNL1
location: 3230..3304
location: region:3230-3304:1
so has part: feature:3230-3304:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3230-3304:1:exon

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND1
gene: ND1
gene synonym: MTND1
nomenclature: Official Symbol: MT-ND1 | Name: mitochondrially encoded NADH dehydrogenase 1 | Provided by: HGNC:HGNC:7455
so part of: sequence
location: 3307..4262
location: region:3307-4262:1
so has part: feature:3307-4262:1:exon
subclass of: SO_0000010

4535
type: Gene
SIO_000068: ncbigene

HGNC:7455
type: HGNC
SIO_000068: hgnc

516000
type: OMIM
SIO_000068: omim

position:3307:1
position: 3307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4262:1
position: 4262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3307-4262:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND1
gene: ND1
gene synonym: MTND1
note: NADH dehydrogenase, subunit 1 (complex I); TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:4261..4262,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQEHLWLLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 3307..4262
location: region:3307-4262:1
so has part: feature:3307-4262:1:exon

YP_003024026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3307-4262:1:exon

ND1
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTND1
gene: ND1
gene synonym: MTND1
standard name: D17S1473E
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 3740..3834
location: region:3740-3834:1
so has part: feature:3740-3834:1:exon

151680
type: UniSTS
SIO_000068: unists

position:3740:1
position: 3740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3834:1
position: 3834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3740-3834:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P1
so part of: sequence
location: 4189..4813
location: region:4189-4813:1
so has part: feature:4189-4813:1:region

273322
type: UniSTS
SIO_000068: unists

position:4189:1
position: 4189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4813:1
position: 4813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4189-4813:1:region

TRNI
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTI
gene: TRNI
gene synonym: MTTI
nomenclature: Official Symbol: MT-TI | Name: mitochondrially encoded tRNA isoleucine | Provided by: HGNC:HGNC:7488
so part of: sequence
location: 4263..4331
location: region:4263-4331:1
so has part: feature:4263-4331:1:exon
subclass of: SO_0000663

4565
type: Gene
SIO_000068: ncbigene

HGNC:7488
type: HGNC
SIO_000068: hgnc

590045
type: OMIM
SIO_000068: omim

position:4263:1
position: 4263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4331:1
position: 4331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4263-4331:1:exon

TRNI
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTI
gene: TRNI
gene synonym: MTTI
product: tRNA-Ile
note: NAR: 0997
anticodon: (pos:4292..4294,aa:Ile,seq:gat)
codon recognized: AUC
SIO_010081: TRNI
subclass of: SO_0000673
so part of: TRNI
location: 4263..4331
location: region:4263-4331:1
so has part: feature:4263-4331:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4263-4331:1:exon

TRNQ
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTQ
gene: TRNQ
gene synonym: MTTQ
nomenclature: Official Symbol: MT-TQ | Name: mitochondrially encoded tRNA glutamine | Provided by: HGNC:HGNC:7495
so part of: sequence
location: complement(4329..4400)
location: region:4329-4400:-1
so has part: feature:4329-4400:-1:exon
subclass of: SO_0000663

4572
type: Gene
SIO_000068: ncbigene

HGNC:7495
type: HGNC
SIO_000068: hgnc

590030
type: OMIM
SIO_000068: omim

position:4329:-1
position: 4329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4400:-1
position: 4400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4329-4400:-1:exon

TRNQ
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTQ
gene: TRNQ
gene synonym: MTTQ
product: tRNA-Gln
note: NAR: 0597
anticodon: (pos:complement(4365..4367),aa:Gln,seq:ttg)
codon recognized: CAA
SIO_010081: TRNQ
subclass of: SO_0000673
so part of: TRNQ
location: complement(4329..4400)
location: region:4329-4400:-1
so has part: feature:4329-4400:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4329-4400:-1:exon

TRNM
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTM
gene: TRNM
gene synonym: MTTM
nomenclature: Official Symbol: MT-TM | Name: mitochondrially encoded tRNA methionine | Provided by: HGNC:HGNC:7492
so part of: sequence
location: 4402..4469
location: region:4402-4469:1
so has part: feature:4402-4469:1:exon
subclass of: SO_0000663

4569
type: Gene
SIO_000068: ncbigene

HGNC:7492
type: HGNC
SIO_000068: hgnc

590065
type: OMIM
SIO_000068: omim

position:4402:1
position: 4402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4469:1
position: 4469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4402-4469:1:exon

TRNM
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTM
gene: TRNM
gene synonym: MTTM
product: tRNA-Met
note: NAR: 1297
anticodon: (pos:4432..4434,aa:Met,seq:cat)
codon recognized: AUG
SIO_010081: TRNM
subclass of: SO_0000673
so part of: TRNM
location: 4402..4469
location: region:4402-4469:1
so has part: feature:4402-4469:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4402-4469:1:exon

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND2
gene: ND2
gene synonym: MTND2
nomenclature: Official Symbol: MT-ND2 | Name: mitochondrially encoded NADH dehydrogenase 2 | Provided by: HGNC:HGNC:7456
so part of: sequence
location: 4470..5511
location: region:4470-5511:1
so has part: feature:4470-5511:1:exon
subclass of: SO_0000010

4536
type: Gene
SIO_000068: ncbigene

HGNC:7456
type: HGNC
SIO_000068: hgnc

516001
type: OMIM
SIO_000068: omim

position:4470:1
position: 4470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5511:1
position: 5511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4470-5511:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND2
gene: ND2
gene synonym: MTND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5511,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIKYFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISPFMLMIL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4470..5511
location: region:4470-5511:1
so has part: feature:4470-5511:1:exon

YP_003024027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4470-5511:1:exon

ND2
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTND2
gene: ND2
gene synonym: MTND2
standard name: PMC113853P1
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4481..5456
location: region:4481-5456:1
so has part: feature:4481-5456:1:exon

270258
type: UniSTS
SIO_000068: unists

position:4481:1
position: 4481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5456:1
position: 5456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4481-5456:1:exon

TRNW
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTW
gene: TRNW
gene synonym: MTTW
nomenclature: Official Symbol: MT-TW | Name: mitochondrially encoded tRNA tryptophan | Provided by: HGNC:HGNC:7501
so part of: sequence
location: 5512..5579
location: region:5512-5579:1
so has part: feature:5512-5579:1:exon
subclass of: SO_0000663

4578
type: Gene
SIO_000068: ncbigene

HGNC:7501
type: HGNC
SIO_000068: hgnc

590095
type: OMIM
SIO_000068: omim

position:5512:1
position: 5512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5579:1
position: 5579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5512-5579:1:exon

TRNW
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTW
gene: TRNW
gene synonym: MTTW
product: tRNA-Trp
note: NAR: 1897
anticodon: (pos:5544..5546,aa:Trp,seq:tca)
codon recognized: UGA
SIO_010081: TRNW
subclass of: SO_0000673
so part of: TRNW
location: 5512..5579
location: region:5512-5579:1
so has part: feature:5512-5579:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5512-5579:1:exon

TRNA
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTA
gene: TRNA
gene synonym: MTTA
nomenclature: Official Symbol: MT-TA | Name: mitochondrially encoded tRNA alanine | Provided by: HGNC:HGNC:7475
so part of: sequence
location: complement(5587..5655)
location: region:5587-5655:-1
so has part: feature:5587-5655:-1:exon
subclass of: SO_0000663

4553
type: Gene
SIO_000068: ncbigene

HGNC:7475
type: HGNC
SIO_000068: hgnc

590000
type: OMIM
SIO_000068: omim

position:5587:-1
position: 5587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5655:-1
position: 5655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5587-5655:-1:exon

TRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTA
gene: TRNA
gene synonym: MTTA
product: tRNA-Ala
note: NAR: 0097
anticodon: (pos:complement(5623..5625),aa:Ala,seq:tgc)
codon recognized: GCA
SIO_010081: TRNA
subclass of: SO_0000673
so part of: TRNA
location: complement(5587..5655)
location: region:5587-5655:-1
so has part: feature:5587-5655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5587-5655:-1:exon

TRNN
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTN
gene: TRNN
gene synonym: MTTN
nomenclature: Official Symbol: MT-TN | Name: mitochondrially encoded tRNA asparagine | Provided by: HGNC:HGNC:7493
so part of: sequence
location: complement(5657..5729)
location: region:5657-5729:-1
so has part: feature:5657-5729:-1:exon
subclass of: SO_0000663

4570
type: Gene
SIO_000068: ncbigene

HGNC:7493
type: HGNC
SIO_000068: hgnc

590010
type: OMIM
SIO_000068: omim

position:5657:-1
position: 5657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5729:-1
position: 5729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5657-5729:-1:exon

TRNN
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTN
gene: TRNN
gene synonym: MTTN
product: tRNA-Asn
note: NAR: 0297
anticodon: (pos:complement(5694..5696),aa:Asn,seq:gtt)
codon recognized: AAC
SIO_010081: TRNN
subclass of: SO_0000673
so part of: TRNN
location: complement(5657..5729)
location: region:5657-5729:-1
so has part: feature:5657-5729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5657-5729:-1:exon

TRNC
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTC
gene: TRNC
gene synonym: MTTC
nomenclature: Official Symbol: MT-TC | Name: mitochondrially encoded tRNA cysteine | Provided by: HGNC:HGNC:7477
so part of: sequence
location: complement(5761..5826)
location: region:5761-5826:-1
so has part: feature:5761-5826:-1:exon
subclass of: SO_0000663

4511
type: Gene
SIO_000068: ncbigene

HGNC:7477
type: HGNC
SIO_000068: hgnc

590020
type: OMIM
SIO_000068: omim

position:5761:-1
position: 5761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5826:-1
position: 5826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5761-5826:-1:exon

TRNC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTC
gene: TRNC
gene synonym: MTTC
product: tRNA-Cys
note: NAR: 0497
anticodon: (pos:complement(5796..5798),aa:Cys,seq:gca)
codon recognized: UGC
SIO_010081: TRNC
subclass of: SO_0000673
so part of: TRNC
location: complement(5761..5826)
location: region:5761-5826:-1
so has part: feature:5761-5826:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5761-5826:-1:exon

TRNY
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTY
gene: TRNY
gene synonym: MTTY
nomenclature: Official Symbol: MT-TY | Name: mitochondrially encoded tRNA tyrosine | Provided by: HGNC:HGNC:7502
so part of: sequence
location: complement(5826..5891)
location: region:5826-5891:-1
so has part: feature:5826-5891:-1:exon
subclass of: SO_0000663

4579
type: Gene
SIO_000068: ncbigene

HGNC:7502
type: HGNC
SIO_000068: hgnc

590100
type: OMIM
SIO_000068: omim

position:5891:-1
position: 5891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5826-5891:-1:exon

TRNY
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTY
gene: TRNY
gene synonym: MTTY
product: tRNA-Tyr
note: NAR: 1997
anticodon: (pos:complement(5860..5862),aa:Tyr,seq:gta)
codon recognized: UAC
SIO_010081: TRNY
subclass of: SO_0000673
so part of: TRNY
location: complement(5826..5891)
location: region:5826-5891:-1
so has part: feature:5826-5891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5826-5891:-1:exon

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: COI
alternative label: MTCO1
gene: COX1
gene synonym: COI; MTCO1
nomenclature: Official Symbol: MT-CO1 | Name: mitochondrially encoded cytochrome c oxidase I | Provided by: HGNC:HGNC:7419
so part of: sequence
location: 5904..7445
location: region:5904-7445:1
so has part: feature:5904-7445:1:exon
subclass of: SO_0000010

4512
type: Gene
SIO_000068: ncbigene

HGNC:7419
type: HGNC
SIO_000068: hgnc

516030
type: OMIM
SIO_000068: omim

position:5904:1
position: 5904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7445:1
position: 7445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5904-7445:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: COI
alternative label: MTCO1
gene: COX1
gene synonym: COI; MTCO1
note: cytochrome c oxidase I
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5904..7445
location: region:5904-7445:1
so has part: feature:5904-7445:1:exon

YP_003024028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5904-7445:1:exon

COX1
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: COI
alternative label: MTCO1
gene: COX1
gene synonym: COI; MTCO1
standard name: PMC55343P2
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 6318..6918
location: region:6318-6918:1
so has part: feature:6318-6918:1:exon

273325
type: UniSTS
SIO_000068: unists

position:6318:1
position: 6318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6918:1
position: 6918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6318-6918:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC20756P3
so part of: sequence
location: 7125..7672
location: region:7125-7672:1
so has part: feature:7125-7672:1:region

271963
type: UniSTS
SIO_000068: unists

position:7125:1
position: 7125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7672:1
position: 7672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7125-7672:1:region

COX1
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: COI
alternative label: MTCO1
gene: COX1
gene synonym: COI; MTCO1
standard name: D17S813E
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 7166..7361
location: region:7166-7361:1
so has part: feature:7166-7361:1:exon

92461
type: UniSTS
SIO_000068: unists

position:7166:1
position: 7166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7361:1
position: 7361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7166-7361:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P3
so part of: sequence
location: 7358..7937
location: region:7358-7937:1
so has part: feature:7358-7937:1:region

273326
type: UniSTS
SIO_000068: unists

position:7358:1
position: 7358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7937:1
position: 7937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7358-7937:1:region

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: RH98513
so part of: sequence
location: 7386..7513
location: region:7386-7513:1
so has part: feature:7386-7513:1:region

83580
type: UniSTS
SIO_000068: unists

position:7386:1
position: 7386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7513:1
position: 7513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7386-7513:1:region

TRNS1
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTS1
gene: TRNS1
gene synonym: MTTS1
nomenclature: Official Symbol: MT-TS1 | Name: mitochondrially encoded tRNA serine 1 (UCN)
so part of: sequence
location: complement(7446..7514)
location: region:7446-7514:-1
so has part: feature:7446-7514:-1:exon
subclass of: SO_0000663

4574
type: Gene
SIO_000068: ncbigene

HGNC:7497
type: HGNC
SIO_000068: hgnc

590080
type: OMIM
SIO_000068: omim

position:7446:-1
position: 7446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7514:-1
position: 7514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7446-7514:-1:exon

TRNS1
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTS1
gene: TRNS1
gene synonym: MTTS1
product: tRNA-Ser
note: NAR: 1697
anticodon: (pos:complement(7482..7484),aa:Ser,seq:tga)
codon recognized: UCN
SIO_010081: TRNS1
subclass of: SO_0000673
so part of: TRNS1
location: complement(7446..7514)
location: region:7446-7514:-1
so has part: feature:7446-7514:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7446-7514:-1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC20756P2
so part of: sequence
location: 7483..8383
location: region:7483-8383:1
so has part: feature:7483-8383:1:region

271962
type: UniSTS
SIO_000068: unists

position:7483:1
position: 7483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8383:1
position: 8383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7483-8383:1:region

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC109173P1
so part of: sequence
location: 7483..8364
location: region:7483-8364:1
so has part: feature:7483-8364:1:region

270154
type: UniSTS
SIO_000068: unists

position:8364:1
position: 8364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7483-8364:1:region

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC20756P1
so part of: sequence
location: 7483..7570
location: region:7483-7570:1
so has part: feature:7483-7570:1:region

271961
type: UniSTS
SIO_000068: unists

position:7570:1
position: 7570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7483-7570:1:region

TRND
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTD
gene: TRND
gene synonym: MTTD
nomenclature: Official Symbol: MT-TD | Name: mitochondrially encoded tRNA aspartic acid | Provided by: HGNC:HGNC:7478
so part of: sequence
location: 7518..7585
location: region:7518-7585:1
so has part: feature:7518-7585:1:exon
subclass of: SO_0000663

4555
type: Gene
SIO_000068: ncbigene

HGNC:7478
type: HGNC
SIO_000068: hgnc

590015
type: OMIM
SIO_000068: omim

position:7518:1
position: 7518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7585:1
position: 7585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7518-7585:1:exon

TRND
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTD
gene: TRND
gene synonym: MTTD
product: tRNA-Asp
note: NAR: 0397
anticodon: (pos:7548..7550,aa:Asp,seq:gtc)
codon recognized: GAC
SIO_010081: TRND
subclass of: SO_0000673
so part of: TRND
location: 7518..7585
location: region:7518-7585:1
so has part: feature:7518-7585:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7518-7585:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC196577P3
so part of: sequence
location: 7561..7983
location: region:7561-7983:1
so has part: feature:7561-7983:1:region

271816
type: UniSTS
SIO_000068: unists

position:7561:1
position: 7561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7983:1
position: 7983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7561-7983:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: COII
alternative label: MTCO2
gene: COX2
gene synonym: COII; MTCO2
nomenclature: Official Symbol: MT-CO2 | Name: mitochondrially encoded cytochrome c oxidase II | Provided by: HGNC:HGNC:7421
so part of: sequence
location: 7586..8269
location: region:7586-8269:1
so has part: feature:7586-8269:1:exon
subclass of: SO_0000010

4513
type: Gene
SIO_000068: ncbigene

HGNC:7421
type: HGNC
SIO_000068: hgnc

516040
type: OMIM
SIO_000068: omim

position:7586:1
position: 7586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8269:1
position: 8269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7586-8269:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: COII
alternative label: MTCO2
gene: COX2
gene synonym: COII; MTCO2
note: cytochrome c oxidase II
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRILYMTDEVNDPSLTIKSIGHQWYWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITSQDVLHSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMGPVFTL
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7586..8269
location: region:7586-8269:1
so has part: feature:7586-8269:1:exon

YP_003024029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7586-8269:1:exon

COX2
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: COII
alternative label: MTCO2
gene: COX2
gene synonym: COII; MTCO2
standard name: D1S2077E
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7690..7773
location: region:7690-7773:1
so has part: feature:7690-7773:1:exon

151716
type: UniSTS
SIO_000068: unists

position:7690:1
position: 7690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7773:1
position: 7773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7690-7773:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: SHGC-57364
so part of: sequence
location: 8164..8291
location: region:8164-8291:1
so has part: feature:8164-8291:1:region

67674
type: UniSTS
SIO_000068: unists

position:8164:1
position: 8164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8291:1
position: 8291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8164-8291:1:region

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P5
so part of: sequence
location: 8280..8882
location: region:8280-8882:1
so has part: feature:8280-8882:1:region

273328
type: UniSTS
SIO_000068: unists

position:8280:1
position: 8280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8882:1
position: 8882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8280-8882:1:region

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P4
so part of: sequence
location: 8280..8366
location: region:8280-8366:1
so has part: feature:8280-8366:1:region

273327
type: UniSTS
SIO_000068: unists

position:8366:1
position: 8366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8280-8366:1:region

TRNK
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTK
gene: TRNK
gene synonym: MTTK
nomenclature: Official Symbol: MT-TK | Name: mitochondrially encoded tRNA lysine | Provided by: HGNC:HGNC:7489
so part of: sequence
location: 8295..8364
location: region:8295-8364:1
so has part: feature:8295-8364:1:exon
subclass of: SO_0000663

4566
type: Gene
SIO_000068: ncbigene

HGNC:7489
type: HGNC
SIO_000068: hgnc

590060
type: OMIM
SIO_000068: omim

position:8295:1
position: 8295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8295-8364:1:exon

TRNK
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTK
gene: TRNK
gene synonym: MTTK
product: tRNA-Lys
note: NAR: 1197
anticodon: (pos:8323..8325,aa:Lys,seq:ttt)
codon recognized: AAA
SIO_010081: TRNK
subclass of: SO_0000673
so part of: TRNK
location: 8295..8364
location: region:8295-8364:1
so has part: feature:8295-8364:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8295-8364:1:exon

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: ATPase8
alternative label: MTATP8
gene: ATP8
gene synonym: ATPase8; MTATP8
nomenclature: Official Symbol: MT-ATP8 | Name: mitochondrially encoded ATP synthase 8 | Provided by: HGNC:HGNC:7415
so part of: sequence
location: 8366..8572
location: region:8366-8572:1
so has part: feature:8366-8572:1:exon
subclass of: SO_0000010

4509
type: Gene
SIO_000068: ncbigene

HGNC:7415
type: HGNC
SIO_000068: hgnc

516070
type: OMIM
SIO_000068: omim

position:8572:1
position: 8572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8366-8572:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: ATPase8
alternative label: MTATP8
gene: ATP8
gene synonym: ATPase8; MTATP8
note: ATP synthase 8; ATPase subunit 8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMKNYNKPWEPKWTKICSLHSLPPQS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 8366..8572
location: region:8366-8572:1
so has part: feature:8366-8572:1:exon

YP_003024030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8366-8572:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: ATPase6
alternative label: MTATP6
gene: ATP6
gene synonym: ATPase6; MTATP6
nomenclature: Official Symbol: MT-ATP6 | Name: mitochondrially encoded ATP synthase 6 | Provided by: HGNC:HGNC:7414
so part of: sequence
location: 8527..9207
location: region:8527-9207:1
so has part: feature:8527-9207:1:exon
subclass of: SO_0000010

4508
type: Gene
SIO_000068: ncbigene

HGNC:7414
type: HGNC
SIO_000068: hgnc

516060
type: OMIM
SIO_000068: omim

position:8527:1
position: 8527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9207:1
position: 9207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8527-9207:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: ATPase6
alternative label: MTATP6
gene: ATP6
gene synonym: ATPase6; MTATP6
note: ATP synthase 6; ATPase subunit 6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTMHNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8527..9207
location: region:8527-9207:1
so has part: feature:8527-9207:1:exon

YP_003024031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8527-9207:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P7
so part of: sequence
location: 8779..9416
location: region:8779-9416:1
so has part: feature:8779-9416:1:region

273330
type: UniSTS
SIO_000068: unists

position:8779:1
position: 8779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9416:1
position: 9416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8779-9416:1:region

ATP6
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: ATPase6
alternative label: MTATP6
gene: ATP6
gene synonym: ATPase6; MTATP6
standard name: PMC55343P6
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8779..8882
location: region:8779-8882:1
so has part: feature:8779-8882:1:exon

273329
type: UniSTS
SIO_000068: unists

urn:…
SIO_000300: 1
SIO_000628: feature:8779-8882:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: COIII
alternative label: MTCO3
gene: COX3
gene synonym: COIII; MTCO3
nomenclature: Official Symbol: MT-CO3 | Name: mitochondrially encoded cytochrome c oxidase III | Provided by: HGNC:HGNC:7422
so part of: sequence
location: 9207..9990
location: region:9207-9990:1
so has part: feature:9207-9990:1:exon
subclass of: SO_0000010

4514
type: Gene
SIO_000068: ncbigene

HGNC:7422
type: HGNC
SIO_000068: hgnc

516050
type: OMIM
SIO_000068: omim

position:9990:1
position: 9990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9207-9990:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: COIII
alternative label: MTCO3
gene: COX3
gene synonym: COIII; MTCO3
note: cytochrome c oxidase III; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9990,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRDVTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASEYFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 9207..9990
location: region:9207-9990:1
so has part: feature:9207-9990:1:exon

YP_003024032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9207-9990:1:exon

COX3
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: COIII
alternative label: MTCO3
gene: COX3
gene synonym: COIII; MTCO3
standard name: PMC55343P8
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 9342..9416
location: region:9342-9416:1
so has part: feature:9342-9416:1:exon

273331
type: UniSTS
SIO_000068: unists

position:9342:1
position: 9342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9342-9416:1:exon

TRNG
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTG
gene: TRNG
gene synonym: MTTG
nomenclature: Official Symbol: MT-TG | Name: mitochondrially encoded tRNA glycine | Provided by: HGNC:HGNC:7486
so part of: sequence
location: 9991..10058
location: region:9991-10058:1
so has part: feature:9991-10058:1:exon
subclass of: SO_0000663

4563
type: Gene
SIO_000068: ncbigene

HGNC:7486
type: HGNC
SIO_000068: hgnc

590035
type: OMIM
SIO_000068: omim

position:9991:1
position: 9991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10058:1
position: 10058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9991-10058:1:exon

TRNG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTG
gene: TRNG
gene synonym: MTTG
product: tRNA-Gly
note: NAR: 0797
anticodon: (pos:10021..10023,aa:Gly,seq:tcc)
codon recognized: GGA
SIO_010081: TRNG
subclass of: SO_0000673
so part of: TRNG
location: 9991..10058
location: region:9991-10058:1
so has part: feature:9991-10058:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9991-10058:1:exon

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND3
gene: ND3
gene synonym: MTND3
nomenclature: Official Symbol: MT-ND3 | Name: mitochondrially encoded NADH dehydrogenase 3 | Provided by: HGNC:HGNC:7458
so part of: sequence
location: 10059..10404
location: region:10059-10404:1
so has part: feature:10059-10404:1:exon
subclass of: SO_0000010

4537
type: Gene
SIO_000068: ncbigene

HGNC:7458
type: HGNC
SIO_000068: hgnc

516002
type: OMIM
SIO_000068: omim

position:10059:1
position: 10059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10404:1
position: 10404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10059-10404:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND3
gene: ND3
gene synonym: MTND3
note: NADH dehydrogenase, subunit 3 (complex I); TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10404,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNFALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWTE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 10059..10404
location: region:10059-10404:1
so has part: feature:10059-10404:1:exon

YP_003024033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10059-10404:1:exon

TRNR
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTR
gene: TRNR
gene synonym: MTTR
nomenclature: Official Symbol: MT-TR | Name: mitochondrially encoded tRNA arginine | Provided by: HGNC:HGNC:7496
so part of: sequence
location: 10405..10469
location: region:10405-10469:1
so has part: feature:10405-10469:1:exon
subclass of: SO_0000663

4573
type: Gene
SIO_000068: ncbigene

HGNC:7496
type: HGNC
SIO_000068: hgnc

590005
type: OMIM
SIO_000068: omim

position:10405:1
position: 10405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10469:1
position: 10469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10405-10469:1:exon

TRNR
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTR
gene: TRNR
gene synonym: MTTR
product: tRNA-Arg
note: NAR: 0197
anticodon: (pos:10435..10437,aa:Arg,seq:tcg)
codon recognized: CGA
SIO_010081: TRNR
subclass of: SO_0000673
so part of: TRNR
location: 10405..10469
location: region:10405-10469:1
so has part: feature:10405-10469:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10405-10469:1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND4L
gene: ND4L
gene synonym: MTND4L
nomenclature: Official Symbol: MT-ND4L | Name: mitochondrially encoded NADH 4L dehydrogenase | Provided by: HGNC:HGNC:7460
so part of: sequence
location: 10470..10766
location: region:10470-10766:1
so has part: feature:10470-10766:1:exon
subclass of: SO_0000010

4539
type: Gene
SIO_000068: ncbigene

HGNC:7460
type: HGNC
SIO_000068: hgnc

516004
type: OMIM
SIO_000068: omim

position:10470:1
position: 10470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10766:1
position: 10766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10470-10766:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND4L
gene: ND4L
gene synonym: MTND4L
note: NADH dehydrogenase, subunit 4L (complex I)
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MPLIYMNIMLAFTISLLGMLVYRSHLMSSLLCLEGMMLSLFIMATLMTLNTHSLLANIVPIAMLVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10470..10766
location: region:10470-10766:1
so has part: feature:10470-10766:1:exon

YP_003024034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10470-10766:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND4
gene: ND4
gene synonym: MTND4
nomenclature: Official Symbol: MT-ND4 | Name: mitochondrially encoded NADH dehydrogenase 4 | Provided by: HGNC:HGNC:7459
so part of: sequence
location: 10760..12137
location: region:10760-12137:1
so has part: feature:10760-12137:1:exon
subclass of: SO_0000010

4538
type: Gene
SIO_000068: ncbigene

HGNC:7459
type: HGNC
SIO_000068: hgnc

516003
type: OMIM
SIO_000068: omim

position:10760:1
position: 10760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12137:1
position: 12137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10760-12137:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND4
gene: ND4
gene synonym: MTND4
note: NADH dehydrogenase, subunit 4 (complex I); TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:12137,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKLIVPTIMLLPLTWLSKKHMIWINTTTHSLIISIIPLLFFNQINNNLFSCSPTFSSDPLTTPLLMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELSNSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNITLLLTGLNMLVTALYSLYMFTTTQWGSLTHHINNMKPSFTRENTLMFMHLSPILLLSLNPDIITGFSS
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10760..12137
location: region:10760-12137:1
so has part: feature:10760-12137:1:exon

YP_003024035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10760-12137:1:exon

TRNH
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTH
gene: TRNH
gene synonym: MTTH
nomenclature: Official Symbol: MT-TH | Name: mitochondrially encoded tRNA histidine | Provided by: HGNC:HGNC:7487
so part of: sequence
location: 12138..12206
location: region:12138-12206:1
so has part: feature:12138-12206:1:exon
subclass of: SO_0000663

4564
type: Gene
SIO_000068: ncbigene

HGNC:7487
type: HGNC
SIO_000068: hgnc

590040
type: OMIM
SIO_000068: omim

position:12138:1
position: 12138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12206:1
position: 12206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12138-12206:1:exon

TRNH
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTH
gene: TRNH
gene synonym: MTTH
product: tRNA-His
note: NAR: 0897
anticodon: (pos:12168..12170,aa:His,seq:gtg)
codon recognized: CAC
SIO_010081: TRNH
subclass of: SO_0000673
so part of: TRNH
location: 12138..12206
location: region:12138-12206:1
so has part: feature:12138-12206:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12138-12206:1:exon

TRNS2
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTS2
gene: TRNS2
gene synonym: MTTS2
nomenclature: Official Symbol: MT-TS2 | Name: mitochondrially encoded tRNA serine 2 (AGU/C) | Provided by: HGNC:HGNC:7498
so part of: sequence
location: 12207..12265
location: region:12207-12265:1
so has part: feature:12207-12265:1:exon
subclass of: SO_0000663

4575
type: Gene
SIO_000068: ncbigene

HGNC:7498
type: HGNC
SIO_000068: hgnc

590085
type: OMIM
SIO_000068: omim

position:12207:1
position: 12207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12265:1
position: 12265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12207-12265:1:exon

TRNS2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTS2
gene: TRNS2
gene synonym: MTTS2
product: tRNA-Ser
note: NAR: 1656
anticodon: (pos:12226..12228,aa:Ser,seq:gct)
codon recognized: AGY
SIO_010081: TRNS2
subclass of: SO_0000673
so part of: TRNS2
location: 12207..12265
location: region:12207-12265:1
so has part: feature:12207-12265:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12207-12265:1:exon

TRNL2
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTL2
gene: TRNL2
gene synonym: MTTL2
nomenclature: Official Symbol: MT-TL2 | Name: mitochondrially encoded tRNA leucine 2 (CUN) | Provided by: HGNC:HGNC:7491
so part of: sequence
location: 12266..12336
location: region:12266-12336:1
so has part: feature:12266-12336:1:exon
subclass of: SO_0000663

4568
type: Gene
SIO_000068: ncbigene

HGNC:7491
type: HGNC
SIO_000068: hgnc

590055
type: OMIM
SIO_000068: omim

position:12266:1
position: 12266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12336:1
position: 12336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12266-12336:1:exon

TRNL2
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTL2
gene: TRNL2
gene synonym: MTTL2
product: tRNA-Leu
note: NAR: 1097
anticodon: (pos:12298..12300,aa:Leu,seq:tag)
codon recognized: CUN
SIO_010081: TRNL2
subclass of: SO_0000673
so part of: TRNL2
location: 12266..12336
location: region:12266-12336:1
so has part: feature:12266-12336:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12266-12336:1:exon

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND5
gene: ND5
gene synonym: MTND5
nomenclature: Official Symbol: MT-ND5 | Name: mitochondrially encoded NADH dehydrogenase 5 | Provided by: HGNC:HGNC:7461
so part of: sequence
location: 12337..14148
location: region:12337-14148:1
so has part: feature:12337-14148:1:exon
subclass of: SO_0000010

4540
type: Gene
SIO_000068: ncbigene

HGNC:7461
type: HGNC
SIO_000068: hgnc

516005
type: OMIM
SIO_000068: omim

position:12337:1
position: 12337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14148:1
position: 14148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12337-14148:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND5
gene: ND5
gene synonym: MTND5
note: NADH dehydrogenase, subunit 5 (complex I)
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETANMSYTNAWALSITLIATSLTSAYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLAAGSLFAGFLITNNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPLCTFYFSNMLGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITSTQKGMIKLYFLSFFFPLILTLLLIT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12337..14148
location: region:12337-14148:1
so has part: feature:12337-14148:1:exon

YP_003024036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12337-14148:1:exon

ND5
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTND5
gene: ND5
gene synonym: MTND5
standard name: PMC55343P9
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 13068..13143
location: region:13068-13143:1
so has part: feature:13068-13143:1:exon

273332
type: UniSTS
SIO_000068: unists

position:13068:1
position: 13068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13143:1
position: 13143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13068-13143:1:exon

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P10
so part of: sequence
location: 13593..14206
location: region:13593-14206:1
so has part: feature:13593-14206:1:region

273323
type: UniSTS
SIO_000068: unists

position:13593:1
position: 13593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14206:1
position: 14206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13593-14206:1:region

STS
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
standard name: PMC55343P12
so part of: sequence
location: 14104..14206
location: region:14104-14206:1
so has part: feature:14104-14206:1:region

273324
type: UniSTS
SIO_000068: unists

position:14104:1
position: 14104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14104-14206:1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTND6
gene: ND6
gene synonym: MTND6
nomenclature: Official Symbol: MT-ND6 | Name: mitochondrially encoded NADH dehydrogenase 6 | Provided by: HGNC:HGNC:7462
so part of: sequence
location: complement(14149..14673)
location: region:14149-14673:-1
so has part: feature:14149-14673:-1:exon
subclass of: SO_0000010

4541
type: Gene
SIO_000068: ncbigene

HGNC:7462
type: HGNC
SIO_000068: hgnc

516006
type: OMIM
SIO_000068: omim

position:14149:-1
position: 14149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14673:-1
position: 14673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14149-14673:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTND6
gene: ND6
gene synonym: MTND6
note: NADH dehydrogenase, subunit 6 (complex I)
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILNFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNSVGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYIVIEIARGN
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14149..14673)
location: region:14149-14673:-1
so has part: feature:14149-14673:-1:exon

YP_003024037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14149-14673:-1:exon

TRNE
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTE
gene: TRNE
gene synonym: MTTE
nomenclature: Official Symbol: MT-TE | Name: mitochondrially encoded tRNA glutamic acid | Provided by: HGNC:HGNC:7479
so part of: sequence
location: complement(14674..14742)
location: region:14674-14742:-1
so has part: feature:14674-14742:-1:exon
subclass of: SO_0000663

4556
type: Gene
SIO_000068: ncbigene

HGNC:7479
type: HGNC
SIO_000068: hgnc

590025
type: OMIM
SIO_000068: omim

position:14674:-1
position: 14674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14742:-1
position: 14742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14674-14742:-1:exon

TRNE
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTE
gene: TRNE
gene synonym: MTTE
product: tRNA-Glu
note: NAR: 0697
anticodon: (pos:complement(14710..14712),aa:Glu,seq:ttc)
codon recognized: GAA
SIO_010081: TRNE
subclass of: SO_0000673
so part of: TRNE
location: complement(14674..14742)
location: region:14674-14742:-1
so has part: feature:14674-14742:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14674-14742:-1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTCYB
gene: CYTB
gene synonym: MTCYB
nomenclature: Official Symbol: MT-CYB | Name: mitochondrially encoded cytochrome b | Provided by: HGNC:HGNC:7427
so part of: sequence
location: 14747..15887
location: region:14747-15887:1
so has part: feature:14747-15887:1:exon
subclass of: SO_0000010

4519
type: Gene
SIO_000068: ncbigene

HGNC:7427
type: HGNC
SIO_000068: hgnc

516020
type: OMIM
SIO_000068: omim

position:14747:1
position: 14747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15887:1
position: 15887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14747-15887:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9606
alternative label: MTCYB
gene: CYTB
gene synonym: MTCYB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15887,aa:TERM)
transl table: 2
product: cytochrome b
translation: MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDASTAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFTFHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLMTLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYFTTILILMPTISLIENKMLKWA
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14747..15887
location: region:14747-15887:1
so has part: feature:14747-15887:1:exon

YP_003024038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14747-15887:1:exon

CYTB
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTCYB
gene: CYTB
gene synonym: MTCYB
standard name: GDB:451664
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 15191..15307
location: region:15191-15307:1
so has part: feature:15191-15307:1:exon

157340
type: UniSTS
SIO_000068: unists

position:15191:1
position: 15191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15307:1
position: 15307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15191-15307:1:exon

CYTB
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 9606
alternative label: MTCYB
gene: CYTB
gene synonym: MTCYB
standard name: D1S2076E
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 15698..15777
location: region:15698-15777:1
so has part: feature:15698-15777:1:exon

151706
type: UniSTS
SIO_000068: unists

position:15698:1
position: 15698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15777:1
position: 15777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15698-15777:1:exon

TRNT
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTT
gene: TRNT
gene synonym: MTTT
nomenclature: Official Symbol: MT-TT | Name: mitochondrially encoded tRNA threonine | Provided by: HGNC:HGNC:7499
so part of: sequence
location: 15888..15953
location: region:15888-15953:1
so has part: feature:15888-15953:1:exon
subclass of: SO_0000663

4576
type: Gene
SIO_000068: ncbigene

HGNC:7499
type: HGNC
SIO_000068: hgnc

590090
type: OMIM
SIO_000068: omim

position:15888:1
position: 15888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15953:1
position: 15953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15888-15953:1:exon

TRNT
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTT
gene: TRNT
gene synonym: MTTT
product: tRNA-Thr
note: NAR: 1797
anticodon: (pos:15919..15921,aa:Thr,seq:tgt)
codon recognized: ACA
SIO_010081: TRNT
subclass of: SO_0000673
so part of: TRNT
location: 15888..15953
location: region:15888-15953:1
so has part: feature:15888-15953:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15888-15953:1:exon

TRNP
type: Gene
subclass of: SO_0000704
RO_0002162: 9606
alternative label: MTTP
gene: TRNP
gene synonym: MTTP
nomenclature: Official Symbol: MT-TP | Name: mitochondrially encoded tRNA proline | Provided by: HGNC:HGNC:7494
so part of: sequence
location: complement(15956..16023)
location: region:15956-16023:-1
so has part: feature:15956-16023:-1:exon
subclass of: SO_0000663

4571
type: Gene
SIO_000068: ncbigene

HGNC:7494
type: HGNC
SIO_000068: hgnc

590075
type: OMIM
SIO_000068: omim

position:15956:-1
position: 15956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16023:-1
position: 16023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15956-16023:-1:exon

TRNP
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9606
alternative label: MTTP
gene: TRNP
gene synonym: MTTP
product: tRNA-Pro
note: NAR: 1597
anticodon: (pos:complement(15990..15992),aa:Pro,seq:tgg)
codon recognized: CCA
SIO_010081: TRNP
subclass of: SO_0000673
so part of: TRNP
location: complement(15956..16023)
location: region:15956-16023:-1
so has part: feature:15956-16023:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15956-16023:-1:exon