MPO: Microbial Phonotye Ontology
type: Ontology
contributor: Shinobu Okamoto
creator: Shuichi Kawashima
language: Japanese
language: English
imports: core
imports: terms
imports: http://purl.org/dc/elements/1.1/
version info: Version 0.3 alpha, created with TopBraid Composer
definition: An ontology for describing microbial phenotypes

Phenotype
type: Class
definition: A structured controlled vocabrary for describing microbial phenotypes

Morphology
type: Class
subclass of: Phenotype
definition: The form and structure of microbes and their specific structural features

Cell shape
type: Class
subclass of: Morphology

Bean
type: Class
subclass of: Cell shape
alternative label: Bean-shaped

Coccus
type: Class
label: 球菌 @ja
subclass of: Cell shape
alternative label: Coccus-shaped

Crescent
type: Class
subclass of: Cell shape
alternative label: Crescent-shaped

Curved
type: Class
subclass of: Cell shape
alternative label: Curved-shaped

Disc
type: Class
subclass of: Cell shape
alternative label: Disc-shaped

Filament
type: Class
subclass of: Cell shape
alternative label: Filament-shaped

Flask
type: Class
subclass of: Cell shape
alternative label: Flask-shaped

Fusiform
type: Class
subclass of: Cell shape
alternative label: Fusiform-shaped

Helical
type: Class
subclass of: Cell shape
alternative label: Helical-shaped

Open-ring
type: Class
subclass of: Cell shape
alternative label: Open-ring-shaped

Oval
type: Class
subclass of: Cell shape
alternative label: Oval-shaped

Ovoid
type: Class
subclass of: Cell shape
alternative label: Ovoid-shaped

Pleomorphic
type: Class
subclass of: Cell shape
alternative label: Pleomorphic-shaped

Rod
type: Class
label: 桿菌 @ja
subclass of: Cell shape
alternative label: Bacillus
alternative label: Rod-shaped

Sphere
type: Class
subclass of: Cell shape
alternative label: Sphere-shaped

Spindle
type: Class
subclass of: Cell shape

Spiral
type: Class
subclass of: Cell shape
alternative label: Spiral-shaped

Spore
type: Class
subclass of: Cell shape
alternative label: Spore-shaped

Square
type: Class
subclass of: Cell shape
alternative label: Square-shaped

Star
type: Class
subclass of: Cell shape
alternative label: Star-shaped

Vibrio
type: Class
subclass of: Spiral
alternative label: Vibrio-shaped

Spirochete
type: Class
subclass of: Spiral
alternative label: Spirochete-shaped

Spirillum
type: Class
subclass of: Spiral

Cell arrangement
type: Class
subclass of: Morphology

Single
type: Class
subclass of: Cell arrangement
alternative label: Singles

Pair
type: Class
subclass of: Cell arrangement
alternative label: Pairs

Tetrad
type: Class
subclass of: Cell arrangement
alternative label: Tetrads

Chain
type: Class
subclass of: Cell arrangement
alternative label: Chains

Filament
type: Class
subclass of: Cell arrangement
alternative label: Filaments

Cluster
type: Class
subclass of: Cell arrangement
alternative label: Clusters

Irregular colony
type: Class
subclass of: Cell arrangement

V-shaped form
type: Class
subclass of: Cell arrangement
alternative label: V-shaped forms

Filamentous
type: Class
subclass of: Filament

Diplococcus
type: Class
subclass of: Pair

Diplobacillus
type: Class
subclass of: Pair

Diplococcus encapsulated
type: Class
subclass of: Pair

Streptococcus
type: Class
subclass of: Chain

Streptobacillus
type: Class
subclass of: Chain

Sarcina
type: Class
subclass of: Cluster

Staphylococcus
type: Class
subclass of: Cluster

Sheathed
type: Class
subclass of: Cell arrangement

Motility
type: Class
subclass of: Phenotype

Motile
type: Class
subclass of: Motility

Nonmotile
type: Class
subclass of: Motility

Taxis
type: Class
label: 走性 @ja
subclass of: Motility

Kinesis
type: Class
label: 動性 @ja
subclass of: Motility

Aerotaxis
type: Class
label: 走気性 @ja
subclass of: Taxis

Barotaxis
type: Class
label: 走圧性 @ja
subclass of: Taxis

Chemotaxis
type: Class
label: 走化性 @ja
subclass of: Taxis

Energy taxis
type: Class
subclass of: Taxis

Galvanotaxis
type: Class
label: 電気走性 @ja
subclass of: Taxis
alternative label: Electrotaxis

Magnetotaxis
type: Class
label: 走磁性 @ja
subclass of: Taxis

Gravitaxis
type: Class
label: 走地性 @ja
subclass of: Taxis
alternative label: Geotaxis

Hydrotaxis
type: Class
label: 走水質 @ja
subclass of: Taxis

Phototaxis
type: Class
label: 走光性 @ja
subclass of: Taxis

Scotophobotaxis
type: Class
subclass of: Taxis

Rheotaxis
type: Class
label: 走流性 @ja
subclass of: Taxis

Thermotaxis
type: Class
subclass of: Taxis

Thigmotaxis
type: Class
label: 接触走性 @ja
subclass of: Taxis

Orthokinesis
type: Class
subclass of: Kinesis

Kinokinesis
type: Class
subclass of: Kinesis

Chemokinesis
type: Class
subclass of: Kinesis

Photokinesis
type: Class
subclass of: Kinesis

Growth
type: Class
subclass of: Phenotype

Thermophile
type: Class
subclass of: Temperature condition

Hyperthermophile
type: Class
subclass of: Temperature condition

Psychrophile
type: Class
subclass of: Temperature condition
alternative label: Cryophile

Obligate thermophile
type: Class
subclass of: Thermophile

Facultative thermophile
type: Class
subclass of: Thermophile

Salinity
type: Class
subclass of: Growth

Halophile
type: Class
label: 好塩性微生物 @ja
subclass of: Salinity

Halotolerant
type: Class
label: 耐塩性微生物 @ja
subclass of: Salinity

pH conditions
type: Class
subclass of: Growth

Acidophile
type: Class
label: 好酸性微生物 @ja
subclass of: pH conditions

Alkaliphile
type: Class
label: 好アルカリ性微生物 @ja
subclass of: pH conditions
alternative label: Basophile
alternative label: Alkalinophile
alternative label: Alkalophile

Neutrophile
type: Class
subclass of: pH conditions

Temperature condition
type: Class
subclass of: Growth

Pressure condition
type: Class
subclass of: Growth

Peizophile
type: Class
label: 好高圧性 @ja
subclass of: Pressure condition

Obligate piezophile
type: Class
label: 偏性好高圧微生物 @ja
subclass of: Peizophile

Facultative piezophile
type: Class
label: 通性好高圧微生物 @ja
subclass of: Peizophile

Radioresistant
type: Class
subclass of: Growth

Psychrotrophic
type: Class
subclass of: Psychrophile

Thermotolerant
type: Class
subclass of: Temperature condition

Psychrotolerant
type: Class
subclass of: Temperature condition

Mesophile
type: Class
subclass of: Temperature condition

Alkalitolerant
type: Class
subclass of: pH conditions

Metabolism
type: Class
subclass of: Phenotype

Oxygen requirement
type: Class
subclass of: Metabolism

Aerobe
type: Class
label: 好気性微生物 @ja
subclass of: Oxygen requirement

Anaerobe
type: Class
label: 嫌気性微生物 @ja
subclass of: Oxygen requirement

Obligate aerobe
type: Class
label: 偏性好気性微生物 @ja
subclass of: Aerobe

Facultative aerobe
type: Class
label: 通性好気性微生物 @ja
subclass of: Aerobe

Obligate anaerobe
type: Class
label: 偏性嫌気微生物 @ja
subclass of: Anaerobe

Facultative anaerobe
type: Class
label: 通性嫌気微生物 @ja
subclass of: Anaerobe

Aerotolerant organism
type: Class
subclass of: Anaerobe

Microaerophile
type: Class
label: 微好気性生物 @ja
subclass of: Aerobe

Energy source
type: Class
subclass of: Metabolism

Autotroph
type: Class
subclass of: Energy source

Heterotroph
type: Class
subclass of: Energy source

Lithotroph
type: Class
subclass of: Energy source

Methanotroph
type: Class
subclass of: Energy source

Methylotroph
type: Class
subclass of: Energy source

Oligotroph
type: Class
subclass of: Energy source

Organotroph
type: Class
subclass of: Energy source

Diazotroph
type: Class
subclass of: Energy source

Phototroph
type: Class
subclass of: Energy source

Photosynthetic
type: Class
subclass of: Energy source

Mixotroph
type: Class
subclass of: Energy source

Chemotroph
type: Class
label: 化学合成生物 @ja
subclass of: Energy source

Microanaerobe
type: Class
subclass of: Anaerobe

Copiotroph
type: Class
subclass of: Energy source

Photoorganotroph
type: Class
subclass of: Phototroph

Photolithotroph
type: Class
subclass of: Phototroph

Photoheterotroph
type: Class
subclass of: Phototroph

Photoautotroph
type: Class
subclass of: Phototroph

Photoorganoheterotroph
type: Class
subclass of: Phototroph

Photoorganoautotroph
type: Class
subclass of: Phototroph

Photolithoheterotroph
type: Class
subclass of: Phototroph

Photolithoautotroph
type: Class
subclass of: Phototroph

Chemoorganotroph
type: Class
subclass of: Chemotroph

Chemolithotroph
type: Class
subclass of: Chemotroph

Chemoheterotroph
type: Class
subclass of: Chemotroph

Chemoautotroph
type: Class
subclass of: Chemotroph

Chemoorganoheterotroph
type: Class
subclass of: Chemotroph

Chemoorganoautotroph
type: Class
subclass of: Chemotroph

Chemolithoheterotroph
type: Class
subclass of: Chemotroph

Chemolithoautotroph
type: Class
subclass of: Chemotroph

Lithoautotroph
type: Class
subclass of: Lithotroph

Lithoheterotroph
type: Class
subclass of: Lithotroph

Carboxydotroph
type: Class
subclass of: Energy source
definition: Any organism that can tolerate a high concentration of carbon monoxide

Development
type: Class
subclass of: Phenotype

Serotype
type: Class
subclass of: Phenotype

Staining
type: Class
subclass of: Phenotype
alternative label: 細胞染色 @ja
alternative label: Cell staining

Gram stain
type: Class
label: グラム染色 @ja
subclass of: Staining

Gram positive
type: Class
label: グラム陽性 @ja
subclass of: Gram stain

Gram negative
type: Class
label: グラム陰性 @ja
subclass of: Gram stain

Gram variable
type: Class
subclass of: Gram stain

Ziehl–Neelsen stain
type: Class
label: 抗酸染色 @ja
subclass of: Staining
alternative label: acid-fast stain

cell shape
type: ObjectProperty
range: Cell shape

oxygen requirement
type: ObjectProperty
range: Oxygen requirement

temperature range
type: ObjectProperty
range: Temperature condition

growth pH
type: DatatypeProperty
range: decimal

optimal growth pH
type: DatatypeProperty
range: decimal
sub property of: growth pH

minimum growth pH
type: DatatypeProperty
range: decimal
sub property of: growth pH

maximum growth pH
type: DatatypeProperty
range: decimal
sub property of: growth pH

growth temperature
type: DatatypeProperty
range: decimal

optimal growth temperature
type: DatatypeProperty
range: decimal
sub property of: growth temperature

minimal growth temperature
type: DatatypeProperty
range: decimal
sub property of: growth temperature

maximal growth temperature
type: DatatypeProperty
range: decimal
sub property of: growth temperature

pH preference
type: ObjectProperty
range: pH conditions

motility
type: ObjectProperty
domain: Motility

salinity
type: ObjectProperty

primary nutritional groups
type: ObjectProperty
domain: Energy source

cell arrangement
type: ObjectProperty
domain: Cell arrangement