Anaplasma phagocytophilum HZ
Neorickettsia sennetsu Miyayama
Ehrlichia chaffeensis Arkansas
Ixodes spp.
host monocytes/macrophages
host granulocytes
host ## ## ## ## monocytes/macrophages
the Lone Star tick (Amblyomma americanum), with white-tailed deer
Wolbachia wBm, endosymbiont of Brugia malayi TRS
the filarial nematode
Wolbachia sp. wMel, endosymbiont of Drosophila melanogaster (fruit fly)
the insect
wild mammals
hematophagous ticks
Shigella flexneri 8401 (serotype 5b)
China
Thiomicrospira crunogena XCL-2
deep-sea hydrothermal vent
hydrothermal vent
deep-sea
Nitrosococcus oceani ATCC 19707
open-ocean
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis FSC 198
Europe
Slovakia
Yersinia pseudotuberculosis IP31758 (serotype O:1b)
the stools of a patient presenting with Far East scarlet-like fever
the Primorski region of the former Soviet Union
the stools of a patient presenting with scarletlike fever
Yersinia pseudotuberculosis IP32953 (serotype I)
France
Russia
Prochlorococcus marinus NATL1A
low optimum light intensity
Prochlorococcus marinus NATL2A
Actinobacillus pleuropneumoniae JL03 (serotype 3)
field
commercial pig farm
the lung of a pig
Enterococcus faecalis V583
the Barnes Hospital, St Louis, MO, USA
a blood culture of a patient
Kineococcus radiotolerans SRS30216
a high-level radioactive environment
Savannah River Site
High-level radioactive waste
the Savannah River Site
High-level radioactive waste environment
High-level radioactive waste facility
Halothermothrix orenii H 168
Tunisia
salt lake
a hypersaline lake
Anaplasma marginale Florida
a pool of blood samples collected from cattle
Brachyspira hyodysenteriae
the large intestine
the porcine large intestine
a pig with swine dysentery
Western Australia
Australia
Finegoldia magna ATCC 29328
an abdominal wound
Salinispora tropica CNB-440
marine
Salinispora arenicola CNS-205
marine sediment
seawate
Edwardsiella tarda EIB202
Shandong province of China
farmed turbot
cold or warm -blooded hosts such as reptiles, amphibians, birds, mammals and even humans
the phagocytes
diseased turbot (Scophthalmus maximus)
a mariculture farm in Yantai, Shandong province of China
Gluconacetobacter diazotrophicus PAl 5 (Brazil)
the sugarcane
sugarcane plants
the sugarcane rhizosphere
the intercellular space of sugarcane roots, stem and leaves
sugarcane
Azoarcus sp. BH72
plants
plant
sugarcane roots
Alagoas Sate, Brazil
Brazil
plants with elevated concentration of sugars
plants that do not accumulate carbon sources in high concentration in vegetative tissues, rice and Kallar grass
Microcystis aeruginosa NIES-843
the surface of various water environments
Azospirillum sp. B510
Cultivated Rice
stems of rice plants (Oryza sativa cv. Nipponbare)
the Kashimadai experimental paddy field of Tohoku University (Miyagi, Japan)
Japan
the surface-sterilized stems of rice plants (Oryza sativa cv. Nipponbare)
the salt marsh plant kallar grass
the stem of cultivated rice, O. sativa cv. Nipponbare
rice tissues
the basal parts of shoots of cv. Nipponbare
Bradyrhizobium sp. ORS 278
stems of aquatic legumes
Cronobacter sakazakii ATCC BAA-894
powdered formula associated with a NICU outbreak
Powdered formula
a powdered formula used during an NICU outbreak
Listeria monocytogenes F2365
cheese
California
Listeria monocytogenes EGD-e
animal
Haloferax volcanii DS2
Halobacterium sp. NRC-1
the Dead Sea
bottom sediment
Arthrospira platensis NIES-39
the periphery of lakes
Lake Chad
Synechococcus sp. CC9605
Marine
Prochlorococcus marinus AS9601
Prochlorococcus marinus MIT 9515
Trichodesmium erythraeum IMS101
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT 9312
Synechococcus sp. RCC307
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9211
Prochlorococcus marinus SS120
Synechococcus sp. WH 7803
Synechococcus sp. WH 8102
Cyanothece sp. ATCC 51142
Prochlorococcus marinus MIT 9313
Acaryochloris marina MBIC11017
Prochlorococcus marinus MIT 9301
Synechococcus sp. PCC 7002
Zunongwangia profunda SM-A87
deep-sea sediment
Gramella forsetii KT0803
surface waters during a phytoplankton bloom
North Sea
the southern Okinawa Trough
The deep-sea
Shewanella piezotolerans WP3
the shallow-water
Photobacterium profundum SS9
Flavobacterium psychrophilum JIP02/86
surface seawater
Bacillus subtilis subsp. natto BEST195
commercial natto
Miyagino-based natto
Enterobacter sp. 638
poplar
the stem of poplar (Populus trichocarpa6deltoides cv. H11-11)
the stem of a 10-year-old hybrid poplar (Populus trichocarpa x P. deltoids cv. H11-11)
Serratia proteamaculans 568
the ASARCO smelter in Tacoma, WA
the interspatial region between plant cells
Pseudomonas putida W619
the stem of poplar
Erwinia pyrifoliae Ep1/96
Korea
Gardnerella vaginalis ATCC 14019
bacterial vaginosis
the vaginal tracts of women with symptomatic bacterial vaginosis
Gardnerella vaginalis 409-05
a healthy, asymptomatic individual with a Nugent score of 9
vaginal secretions of women suffering from bacterial vaginosis
an asymptomatic subject with a perturbed vaginal microbiome
bacterial vaginosis patients
vaginal secretions of bacterial vaginosis patients
the vaginal swab of a healthy female with a high Nugent score of 9
patients with symptomatic bacterial vaginosis
an asymptomatic individual
Rhodococcus equi 103S
intracellular
macrophages
Equine, porcine and bovine
soil
the macrophage vacuole
herbivore intestine, manure and animal tissues
the foal
Kitasatospora setae KM-6054
Kytococcus sedentarius DSM 20547
a marine environment
Beutenbergia cavernae DSM 12333
Guangxi (China)
cave
the Reed Flute Cave
Guilin, Guangxi, China
Atopobium parvulum DSM 20469
the human oral cavity
Eggerthella lenta DSM 2243
a rectal tumor
Halorhabdus utahensis DSM 12940
the southern arm of Great Salt Lake, Utah, USA
a sediment sample
Halorhabdus tiamatea SARL4B
the Shaban Deep in the northern Red Sea
the brine-sediment interface
Slackia heliotrinireducens DSM 20476
the ruminal flora of a sheep
Kangiella koreensis DSM 16069
Daepo Beach, Yellow Sea, Korea
tidal flat sediments
a tidal flat
the Yellow Sea in Korea
Streptosporangium roseum DSM 43021
vegetable garden soil
Gordonia bronchialis DSM 43247
the sputum of a patient with pulmonary disease
sputum of patients with pulmonary disease
Olsenella uli DSM 7084
dental plaque in periodontitis patients
human gingival crevices
Cellulomonas flavigena DSM 20109
Planctomyces limnophilus DSM 3776
lake Plußsee in Holstein, Germany
Germany
the freshwater
Nakamurella multipartita DSM 44233
activated sludge
Kribbella flavida DSM 17836
Spirosoma linguale DSM 74
a laboratory water bath
Thermosphaera aggregans DSM 11486
a water-sediment sample of a hot terrestrial spring
Obsidian Pool, Yellowstone National Park, Wyoming
water and sediment samples of a terrestrial circumneutral hot solfataric spring
the Mud Volcano area of the Yellowstone National Park, Wyoming
Aminobacterium colombiense DSM 12261
Columbia
an anaerobic dairy wastewater lagoon
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
Methanoplanus petrolearius
an offshore oil field
the Gulf of Guinea
Guinea
the Gulf of Guinea, Africa
an offshore oil-producing well
Arcanobacterium haemolyticum
certain islands of the North and West Pacific
infections amongst American soldiers
infections in American soldiers
the pharynx of human and farm animals
Marinobacter adhaerens HP15
marine microorganism
diatom
diatom cells
the German Wadden Sea
marine particles
a marine particle
Isosphaera pallida ATCC 43644
a hot spring
Kah-nee-tah, Oregon, USA
Weeksella virosa DSM 16922
a clinical specimen of urine
Cellulophaga algicola DSM 14237
Melosira
the Eastern Antarctic coastal zone
the chain-forming sea-ice diatom Melosira
Leadbetterella byssophila DSM 17132
cotton-waste compost soil used as mushroom cultivation
Suwon, South Korea
cotton waste
Thermomonospora curvata DSM 43183
municipal refuse compost samples
Thioalkalivibrio sulfidophilus HL-EbGr7
a full-scale bioreactor
high salt concentrations
Netherlands
a full-scale Thiopaq bioreactor
Lactobacillus johnsonii DPC 6026
the porcine intestinal tract
porcine
Lactobacillus johnsonii NCC 533
human
Lactobacillus johnsonii FI9785
poultry
Lactobacillus gasseri ATCC 33323
Porcine
a porcine small intestine
Propionibacterium acnes 266
human skin
sebaceous follicles
skin
the skin of most human bodies
sebaceous follicles of the human skin
Rhodospirillum rubrum ATCC 11170
Tsukamurella paurometabola DSM 20162
the mycetome
ovaries of Cimex lectularis (bedbug)
Syntrophobotulus glycolicus DSM 8271
Konstanz, Germany
anoxic sewage sludge
Buchnera aphidicola APS, endosymbiont of Acyrthosiphon pisum (pea aphid)
Acyrthosiphon pisum
Buchnera aphidicola 5A, endosymbiont of Acyrthosiphon pisum
Buchnera aphidicola Sg, endosymbiont of Schizaphis graminum (greenbug)
Schizaphis graminum
Buchnera aphidicola Bp, endosymbiont of Baizongia pistaciae
Baizongia pistaciae
Buchnera aphidicola Tuc7, endosymbiont of Acyrthosiphon pisum
Buchnera aphidicola Cc, endosymbiont of Cinara cedri
Cinara cedri
Buchnera aphidicola Ak, endosymbiont of Acyrthosiphon kondoi (blue alfalfa aphid)
Acyrthosiphon kondoi
Buchnera aphidicola Ua, endosymbiont of Uroleucon ambrosiae
Uroleucon ambrosiae
aphid
Tucson, AZ
Halomonas elongata DSM 2581
high salinity
Xenorhabdus nematophila ATCC 19061
nematode
Xenorhabdus bovienii SS-2004
Synechocystis sp. PCC 6803
freshwater
Synechocystis sp. PCC 6803 GT-S
Mycobacterium indicus pranii MTCC 9506
soil–water interface
the carbon starvation
Catenulispora acidiphila DSM 44928
high salt concentration
Oakland, California
a freshwater pond
Mesotoga prima
Baltimore Harbor
Northwest Branch of Baltimore Harbor, Baltimore, Maryland
hydrocarbon
Anabaena sp. 90
a freshwater lake
Finland
Lake Vesijärvi, Finland
Thermacetogenium phaeum DSM 12270
sludge of an anaerobic digester
Spiribacter salinus M19-40
Aquatic Hypersaline Environments
an intermediate salinity solar saltern pond
the Isla Cristina saltern
Nonlabens dokdonensis DSW-6
the oligotrophic surface of the ocean
between the two main islands of Dokdo, Republic of Korea
the surface seawater
the seawater sample
Dokdo in the East Sea of Korea
Candidatus Moranella endobia PCVAL
Tremblaya princeps
Planococcus citri
Candidatus Tremblaya princeps PCIT
mealybug
Candidatus Tremblaya princeps PCVAL
the citrus mealybug Planococcus citri
the aphid Cinara cedri
Serratia symbiotica Cinara cedri
Candidatus Moranella endobia PCIT
a Cactaceae at the Botanical Garden of the Universitat de Valencia (Valencia, Spain)
Spain
Candidatus Blochmannia chromaiodes 640, endosymbiont of Camponotus chromaiodes
carpenter ants
the carpenter ant Camponotus chromaiodes
ants
Wolbachia sp. wRi
adult Drosophila simulans
Wolbachia wMel
Drosophila melanogaster
Serratia marcescens WW4
paper machines
the wire spray system of three paper machines
the Yuen-Foong-Yu Paper Manufacturing Company in Taiwan
the slimy water in the wire spray system of paper machines
Adlercreutzia equolifaciens DSM 19450
human feces
the feces of a healthy human
Candidatus Sodalis pierantonius SOPE
Sitophilus oryzae
Candidatus Nasuia deltocephalinicola NAS-ALF
Macrosteles quadrilineatus
Sodalis glossinidius morsitans, endosymbiont of Glossina spp. (tsetse flies)
tsetse flies
Sodalis sp. HS1
a hand wound following impalement with a tree branch
insect
host bacteriocytes
the cereal weevils Sitophilus spp. Endosymbionts
the cereal weevils Sitophilus spp. (described in S. oryzae, S. zeamais, and S. granarius)
the rice weevil
the cytoplasm of the insect cells
freshwater pond
Synechocystis sp. PCC 6803 PCC-M
Xanthomonas oryzae pv. oryzae KACC 10331
diseased rice
Pyrus pyrifolia
Erwinia pyrifoliae DSM 12163
wood samples of Asian pear trees
necrotic branches of Pyrus pyrifolia
necrotic symptoms of leaves and branches of Pyrus pyrifolia cv. ' Shingo '
Asian pears
South Korea
Synechocystis sp. PCC 6803 PCC-N
Synechocystis sp. PCC 6803 PCC-P
eutrophic lakes, ponds, and reservoirs
waters
Ibaraki, Japan
ulcer in a clinical case of tularaemia
Ohio
Amycolatopsis orientalis HCCB10007
faeces of a healthy human
a healthy woman (25 years old)
human faeces
Kosmotoga olearia TBF 19.5.1
an oil production fluid
oil production fluid
the Troll B platform in the North Sea
oil production fluids
the Troll B oil platform (6 ° 46′ 27.8″ N 0 ° 30′ 11.5″ E)
the sea floor
oil production water
the Troll B oil platform in the North Sea
Oil reservoir
sputum
Prochlorococcus marinus MED4 (subsp. pastoris str. CCMP1986)
Mycobacterium tuberculosis CCDC5079
patients with secondary pulmonary tuberculosis
Prochlorococcus marinus SS120 (subsp. marinus CCMP1375)
the Arabian Sea (19°129N, 67°109E)
Fujian Province, China
Staphylococcus epidermidis ATCC 12228
Enterococcus faecalis OG1RF
Streptococcus pyogenes HSC5
oral
the Atlantic
the surface of the Mediterranean Sea
Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
the milk gland tissue
epithelial cells
the upper airways and the integument
buccal cells
the surface
host cells
the tsetse fly
the sludge
activated sludge acclimated with sugar-containing synthetic wastewater
Activated Sludge
Tsetse flies (Diptera: Glossinidae)
Host Cells
the Mediterranean Sea
the Pacific
the Sargasso Sea
Pacific
the surface of boiled soybean
the Pacific Ocean
Propionibacterium acnes KPA171202
California Current
Gulf Stream
Propionibacterium acnes SK137
Sargasso Sea
Surface
Stool
Human
Synechococcus sp. CC9902
Pantoea ananatis AJ13355
Pantoea vagans C9-1
Equatorial Pacific
Synechococcus sp. CC9311
Candidatus Saccharibacteria bacterium RAAC3_TM7_1
one of three wells at the U.S. Department of Energy Integrated Field Research Challenge (IFRC) aquifer in Rifle, CO
Pantoea ananatis LMG 20103
South Africa
diseased Eucalyptus
a variety of sugars and organic acids at acidic
Candidate division WWE3 bacterium RAAC2_WWE3_1
marine particulate samples
the German Wadden Sea (53°43′20″N, 07°43′20″E)
surface waters
Coriobacterium glomerans PW2
Mycobacterium tuberculosis CCDC5180
Thermotoga thermarum DSM 5069
Thermosipho melanesiensis BI429
Petrotoga mobilis SJ95
Thermosipho africanus TCF52B
Fervidobacterium nodosum Rt17-B1
Kosmotoga olearia
North Atlantic
Acetobacterium woodii DSM 1030
Arabian Sea
Nostoc punctiforme PCC 73102
Soil
Anabaena variabilis ATCC 29413
Freshwater
Nostoc sp. PCC 7120 (Anabaena sp. PCC 7120)
Mediterranean Sea
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 7424
Synechococcus sp. JA-2-3B'a(2-13) (Cyanobacteria bacterium Yellowstone B-Prime)
Hot spring
Synechococcus sp. JA-3-3Ab (Cyanobacteria bacterium Yellowstone A-Prime)
Thermosynechococcus elongatus BP-1
Candidate division SR1 bacterium RAAC1_SR1_1
aquifer sediment
Thermotoga maritima MSB8
Enterobacter cloacae subsp. cloacae NCTC 9394
Thermotoga lettingae TMO
Enterobacter lignolyticus SCF1 (Enterobacter cloacae SCF1)
Puerto Rico
Thermotoga petrophila RKU-1
Thermotoga neapolitana DSM 4359
Thermotoga sp. RQ2
Thermotoga naphthophila RKU-10
Enterobacter cloacae EcWSU1
onion bulbs that were exhibiting symptoms of rot
poplar trees
onions exhibiting symptoms of Enterobacter bulb decay
Rifle
the Gulf Stream
Filarial nematodes
Insects
Western Caribbean
Iwata-shi (Shizuoka, Japan)
the soil of a tea plantation
sediment
an acidic pH
ovaries of bed bugs (Cimex lectularius)
the mycetomes
human sputum
Listeria monocytogenes 08-5923
Human, Blood
Listeria monocytogenes 08-5578
Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 6301
Acetobacter pasteurianus IFO 3283-01-42C
Mediterranean
Acetobacter pasteurianus IFO 3283-01
Gluconacetobacter xylinus NBRC 3288
Microcystis aeruginosa NIES 843
Gloeobacter violaceus PCC 7421
Rock
the deep euphotic zone
human ## ## ## periodontal pockets
sugar waste activated sludge
Tsetse (Diptera: Glossinidae)
Thalassiosira weissflogii cell
diatoms
epithelial tissues ## ## which include cells of the mucosa of the upper respiratory tract
Corynebacterium glutamicum K051
human buccal epithelial cells
the milk gland lumen
the milk in the accessory glands
milk gland lumen
the host cell cytosol in the bacteriome organ
the milk gland organ
bacteriocytes
the Arabian Sea
the tsetse fly Glossina morsitans morsitans
the North Atlantic
Fresh water
Glossina morsitans morsitans
fly populations
Zimbabwe