Halomonas elongata DSM 2581
Bacillus clausii.
intestine
Staphylococcus aureus D30
nasal fluids, surface of organotypic nasal epithelia
Staphylococcus aureus 930918-3
burn victim
Streptococcus mutans sv. C UA159
infected root canals with apical periodontitis
Francisella tularensis holarctica FSC257
tick Dermacentor pictus
Campylobacter fetus venerealis Azul-94
bovine aborted fetus
Argentinean field
Erwinia tasmaniensis Et1/99
apple and pear flora
Erwinia billingiae Eb661
plant surfaces
Campylobacter jejuni jejuni NCTC 11168
case of campylobacteriosis
chickens
Ehrlichia chaffeensis Sapulpa
human
Ehrlichia chaffeensis Arkansas
Ehrlichia chaffeensis Saint Vincent
Ehrlichia chaffeensis Jax
Campylobacter jejuni jejuni 327
turkey slaughterhouse
turkey slaughter production line
turkey skin surface
Kordia algicida OT-1
Skeletonema costatum bloom
Chloroflexus aurantiacus J-10-fl
hot spring
Hakone district, Japan
Japan
Clostridium difficile QCD-76w55, NAP1
Canada
Crocosphaera watsonii WH0002
North Pacific
Kyrpidia tusciae T2, DSM 2912
San Federigo, a geothermal area near Lago, Tuscany, Italy
Italy
ponds in the solfatara
Haemophilus parasuis 29755
pig exhibiting Glässer’s disease
Iowa
Ktedonobacter racemifer SOSP1-21, DSM 44963
soil sample of a black locust wood
Gerenzano, Northern Italy
Caminibacter mediatlanticus TB-2
Mid-Atlantic Ridge
walls of an active deep-sea hydrothermal vent chimney
walls of an active deep-sea hydrothermal vent
Rainbow vent field on the Mid-Atlantic Ridge
Moraxella catarrhalis 7169
middle ear of a child who had otitis media
Candidatus Kuenenia stuttgartiensis CH1
China
wastewater treatment plant
Candidatus Kuenenia stuttgartiensis RU1
Nijmegen, The Netherlands
Netherlands
wastewater treatment UASB nitrogen removal reactor
digester sludg
Burkholderia pseudomallei 406e
toe swab in 1988 from a 21-year-old male laborer
Burkholderia pseudomallei 1106a
Thailand
23-year-old female rice farmer
Burkholderia pseudomallei 1106b
liver abscess
Burkholderia pseudomallei 1710a
52-year-old male rice farmer with a new diagnosis of diabetes mellitus
Oscillibacter valericigenes Sjm18-20
Shimane Prefecture in Japan
alimentary canal of a Japanese corbicula clam (Corbicula japonica)
Mycobacterium tuberculosis CTRI-4
Tomsk (Siberia, Russian Federation)
Russian Federation
Mycobacterium tuberculosis CTRI-3
Mycobacterium tuberculosis CTRI-2
Central region of the European Russia
Corynebacterium urealyticum DSM 7111
urine of a young boy with an ectopic kidney
urine samples of a 9-year-old patient with an ectopic kidney
Staphylococcus aureus ATCC 29213
Staphylococcus aureus aureus USA300_TCH1516
Staphylococcus aureus aureus USA300
Staphylococcus aureus aureus Newman
Clostridium chauvoei JF4335
Switzerland
diseased or dead cattle
Leptonema illini 3055, DSM 21528
urine of a clinically healthy bull
Borrelia hermsii DAH
patient acutely ill during a relapse phase consistent with tick-borne relapsing fever
Rickettsia japonica YH
Japanese patients with spotted fever
Lactobacillus paracasei COM0101
commercial fermented milk product
Lactobacillus paracasei paracasei JCM 8130
milk product
Lactobacillus casei casei ATCC 393
cheese
Ruminococcus gnavus ATCC 29149
Human Gut
Ruminococcus gnavus sv. E1
human gut
fecal sample of a healthy human adult
predominant faecal microbiota of a healthy human adult
Chrysiogenes arsenatis DSM 11915
arsenic-contaminated gold mine wastewater
arsenic-contaminated mud of a reed bed
Australia
Enterococcus sp. HSIEG1
human small intestine
small intestine
Coprothermobacter proteolyticus DSM 5265
thermophilic digester fed with tannery waste and cattle manure
Mycobacterium avium 104
Mycobacterium avium avium ATCC 25291
bird
Haemophilus influenzae KR494
human upper respiratory tract
Listeria monocytogenes QOC1
blood cultures of male patient
Listeria monocytogenes QOC2
Austria
Raoultella ornithinolytica TNT
Explosive-Contaminated Soil
Belgium
military soil
TNT-contaminated forest soil at a military site
Clostridium butyricum 5521
case of botulism
Enterococcus mundtii crl1656
Argentina
stripping milk of an Argentinean cow
Pseudomonas tolaasii NCPPB 2192
cultivated mushrooms
Bdellovibrio bacteriovorus HD100
soil
Listeria monocytogenes 6179
Anabaena variabilis ATCC 29413
Mississipp
Staphylococcus capitis CR01
Lyon, France
France
blood culture of a preterm infant with late-onset sepsis
Pseudomonas putida W15Oct28
Brussels
stream
river
Woluwe River, Belgium
the river Woluwe
river surface water
Woluwe river
Rubrivivax gelatinosus CBS
Denver, Colorado
Enterobacter cloacae S611
surface-sterilized germinating wheat seeds
Azospirillum brasilense Sp245
Brazil
wheat roots
Listeria monocytogenes NTSN
Jiangsu Province, China
brains of sheep
Listeria monocytogenes LM201
foodstuff
Hubei province (China)
Escherichia coli O26:H11
Clostridium septicum
environment and in the gastrointestinal tract of humans and animals
Escherichia coli Nissle 1917
faeces of a World War I soldier
Pedobacter sp. NL19
north of Portugal
Portugal
sludge from an abandoned uranium mine
Akkermansia muciniphila ATCC BAA-835
faeces
human intestinal tract
Escherichia coli 1303
udder secretions of cows with clinical mastitis
Tasmania, Australia
apple flowers
Tasmania
Enterococcus faecalis T8
Enterococcus faecalis OG1RF, ATCC 47077
Enterococcus faecalis V583
Candidatus Pelagibacter ubique SAR11 HTCC1062
Tomsk
Enterococcus faecalis Fly1
USA
Drosophila
Coxiella burnetii MSU Goat Q177
Montana, USA
Goat cotyledon, abortion
Human
Campylobacter coli K7
Pakistan
Campylobacter coli K3
Campylobacter coli RM2228
Francisella tularensis holarctica FSC260
Enterococcus faecalis TUSoD Ef11
Enterococcus faecalis AR01/DG
Quinta do Bispo, in the Viseu District, Portugal
sludge sample collected from an abandoned uranium mine
Enterococcus faecalis ATCC 4200
Enterococcus faecalis 62
Enterococcus faecalis E1Sol
Enterococcus faecalis D6
Enterococcus faecalis JH1
Enterococcus faecalis T2, Sapporo-603
Enterococcus faecalis Symbioflor 1
Enterococcus faecalis TX1322
Enterococcus faecalis X98, ATCC 27276
Shewanella sp. W3-18-1
marine sediments
Enterococcus faecalis CH188
Enterococcus faecalis HIP11704
Enterococcus faecalis HH22
Enterococcus faecalis MMH594
Enterococcus faecalis TX0104
Shewanella putrefaciens CN-32
anaerobic shale sandstone
Enterococcus faecalis S613
Thermus thermophilus HB8
Cyanothece sp. PCC 7822
Synechococcus sp. M16.17
Gulf of Mexico
Mexico
Enterococcus faecalis R712
Haemophilus ducreyi 35000HP
Winnipeg, Canada
Synechococcus sp. M11.1
Enterococcus faecalis Merz96
Blood
Rhodothermus marinus
intertidal hot spring
Isafjardardjup in northwestern Iceland
Iceland
Bacillus anthracis Vollum
England
Enterococcus faecalis ATCC 29200
Urogenital
Candidatus Chlorothrix halophila
Baja California Sur, Mexico
Bacillus thuringiensis sv. kurstaki HD73
Moraxella catarrhalis RH4
Burkholderia pseudomallei B7210
52-Year-old male rice farmer
empyema drain in human
Pedosphaera parvula Ellin514
Ellinbank, Victoria, Australia
Moraxella catarrhalis 035E
middle ear effusion
Francisella tularensis holarctica FSC269
Francisella tularensis holarctica FSC268
Bacillus cereus G9241
Francisella tularensis holarctica FSC267
Bacillus anthracis Sterne
South Africa
Francisella tularensis holarctica FSC266
Francisella tularensis holarctica FSC265
Francisella tularensis holarctica FSC264
Francisella tularensis holarctica FSC263
Francisella tularensis holarctica FSC262
Chicken
Francisella tularensis holarctica FSC261
Skåne
Clostridium acetobutylicum ATCC 824
New Mexico
marine sediment
Washington state
New Zealand
Dog
Corynebacterium glutamicum ATCC 13032
Francisella tularensis holarctica LVS
Frederick, Maryland
Coxiella burnetii RSA 334
human blood
Coxiella burnetii RSA 331
Norway
Feces
Vladimir
Enterococcus faecalis T11 (Okinawa-C1)
Urine
Solomon Islands
Chthoniobacter flavus Ellin428
Victoria, Australia
pasture soil
Hakone hot spring area in Japan
Liver
Campylobacter jejuni jejuni 84-25
cerebrospinal fluid of an apparently immunologically normal infant with meningitis
Fresh water, hot spring
Campylobacter jejuni jejuni 81-176
human isolate from an outbreak of milk-borne diarrheal disease
Listeria monocytogenes 10403s
Bozeman, MT
Clostridium difficile QCD-32g58
Quebec, Canada
human skin lesions
Listeria monocytogenes EGD
guinea pigs
Clostridium difficile QCD-66c26
Clostridium difficile QCD-37x79, NAP1a/001
London, Ontario Canada
Bacillus sp. SG-1
La Jolla, CA
Enterococcus saccharolyticus ATCC 43076
Straw bedding
sandy marine sediments
Enterococcus italicus DSM 15952
cow udder
Minnesota, Minneapolis, US
Hawaii
Bacillus thuringiensis sv. kurstaki HD-1
United States
Desulfuromonas acetoxidans DSM 684
marine
Fibrobacter succinogenes succinogenes S85, ATCC 19169
rumens of animals ingesting a forage diet
Toe swab isolated from a 21-year-old male laborer with disseminated disease including bacteremia, lung, skin, and renal tract involvement
23-Year-old female rice farmer
Pus aspirated from liver abscess
Dallas, TX
Francisella tularensis holarctica FSC258
Granulicatella adiacens
62-yr-old man
Central Africa
Human blood
Denmark
Pig
cattle
United Kingdom
patient who was admitted to the hospital with an anthrax-like fulminant pneumonia
sputum and blood of a patient with life-threatening pneumonia
ryegrass-clover pasture
Germany
Escherichia coli O127:H6 E2348/69 (EPEC)
Haloterrigena turkmenica VKM B-1734, DSM 5511
Thermomonospora curvata DSM 43183
Oral
composts containing plant materials
Clostridium difficile QCD-97b34, NAP1b/006
St. John's, Newfoundland, Canada
Chlamydophila caviae
Meiothermus ruber 21, DSM 1279
Bacillus subtilis NCIB 3610
Haloarcula japonica TR-1
Pacific
Escherichia coli APEC O18
deceased turkey presenting signs of colibacillosis
Escherichia coli O157:H7 EDL933 (EHEC)
Campylobacter upsaliensis RM3195
Campylobacter coli 90-3
Francisella tularensis holarctica FSC259
Bacillus anthracis CZC5
Zambia
hippopotamus