An ontology for describing microbial phenotypes
Microbial phenotype
A microbial phenotype is an observable characteristic of a microbe
Organism
Location
Sampling location
Habitat
Growth temperature
Optimal growth temperature
Maximum growth temperature
Minimum growth temperature
Maximum optimal growth temperature
Minimum optimal growth temperature
Growth pH
Optimal growth pH
Maximum growth pH
Minimum growth pH
Maximum optimal growth pH
Minimum optimal growth pH
Growth salinity
Optimal growth salinity
Maximum growth salinity
Minimum growth salinity
Maximum optimal growth salinity
Minimum optimal growth salinity
Growth pressure
Optimal growth pressure
Maximum growth pressure
Minimum growth pressure
Maximum optimal growth pressure
Minimum optimal growth pressure
Depth of Water
Cell size
Width
Length
Minimum width
Maximum width
Minimum length
Maximum length
Growth illuminance
Optimal growth illuminance
Minimum Growth illuminance
Maximum growth illuminance
Minimum optimal growth illuminance
Maximum optimal growth illuminance
Growth radiation
Morphology
The form and structure of microbes and their specific structural features
Cell shape
Bean shape
Bean
Bean-shaped
Sphere-shaped (MPO_01016) was merged to this class (MPO_01003) and the label and prefferred label were changed from Coccus to Sphere
Sphere shape
球菌
Coccoid
Coccus
Coccus-shaped
Sphere
Sphere-shaped
Crescent shape
Crescent
Crescent-shaped
Curved shape
Curved
Curved-shaped
Disc shape
Disc
Disc-shaped
Filament shape
Filament
Filament-shaped
Flask shape
Flask
Flask-shaped
Fusiform shape
Fusiform
Fusiform-shaped
Helical shape
Helical
Helical-shaped
Open-ring shape
Open-ring
Open-ring-shaped
Oval shape
Oval
Oval-shaped
Ovoid shape
Ovoid
Ovoid-shaped
Pleomorphic shape
Pleomorphic
Pleomorphic-shaped
Rod shape
桿菌
Bacillus
Rod
Rod-shaped
Spindle shape
Spindle
Spiral shape
Spiral
Spiral-shaped
Spore shape
Spore
Spore-shaped
Square shape
Square
Square-shaped
Star shape
Star
Star-shaped
Vibrio shape
Vibrio
Vibrio-shaped
Spirochete shape
Spirochete
Spirochete-shaped
Spirillum shape
Spirillum
Cell arrangement
Single arrangement
Single
Singles
Pair arrangement
Pair
Pairs
Tetrad arrangement
Tetrad
Tetrads
Chain arrangement
Chain
Chains
Filament arrangement
Filaments
Cluster arrangement
Cluster
Clusters
Irregular colony
V-shaped form arrangement
V-shaped form
V-shaped forms
Filamentous arrangement
Filamentous
Diplococcus arrangement
Diplococcus
Diplobacillus arrangement
Diplobacillus
Diplococcus encapsulated arrangement
Diplococcus encapsulated
Streptococcus arrangement
Streptococcus
Streptobacillus arrangement
Streptobacillus
Sarcina arrangement
Sarcina
Staphylococcus arrangement
Staphylococcus
Sheathed arrangement
Sheathed
Motility
Motile
Nonmotile
Taxis
走性
Kinesis
動性
Aerotaxis
走気性
Barotaxis
走圧性
Chemotaxis
走化性
Energy taxis
Galvanotaxis
電気走性
Electrotaxis
Magnetotaxis
走磁性
Gravitaxis
走地性
Geotaxis
Hydrotaxis
走水質
Phototaxis
走光性
Scotophobotaxis
Rheotaxis
走流性
Thermotaxis
Thigmotaxis
接触走性
Orthokinesis
Kinokinesis
Chemokinesis
Photokinesis
Gliding motility
Twitching motility
Swarming motility
Swimming motility
Darting motility
Tumbling motility
Sliding motility
Floating motility
Classification on environmental growth condition
Thermophilic
好熱性
Thermophile
A microbial organism that thrives at relatively high temperatures, between 45 and 122 C (113 and 252 F).
Hyperthermophilic
超好熱性
Hyperthermophile
A subset of obligate thermophiles for which optimal growth temperatures are above 80C.
Psychrophilic
好冷性
Cryophile
Psychrophile
Psychrophilic microbes are a type of bacteria or archia that are capable of growing and thriving in cold environment. Thier optimal growth temperatures are 15 C or lower and maximal are 20 C or lower and mimal growth temperatures are below 0 C.
Obligate thermophilic
偏性好熱性
Extreme thermophile
Obligate thermophile
Facultative thermophilic
通性好熱性
Facultative thermophile
Classification of growth salinity
耐塩性
Halophile
好塩性微生物
Halophilic
Halotolerant
耐塩性微生物
Classification of growth pH
Acidophilic
好酸性微生物
Acidophile
Alkaliphilic
好アルカリ性微生物
Alkalinophile
Alkaliphile
Alkalophile
Basophile
Neutrophilic
Neutrophile
Classification of growth temperature
温度許容度
Temperature tolerance
Classification of growth pressure
Peizophilic
好高圧性
Peizophile
Obligate piezophilic
偏性好高圧微生物
Obligate piezophile
Facultative piezophilic
通性好高圧微生物
Facultative piezophile
Radioresistant
放射線耐性
Psychrotrophic
低温性
Psychrotrophic microbes are cold-tolerant bacteria or archaea that can grow or even thrive in a cold environment although their optimal growth temperatures are between above 15 C and below 20 C. Their maximal growth temperatures are below 20 C.
Psychrotrophile
Thermotolerant
耐熱性
Psychrotolerant
耐寒性
Mesophilic
中等温度好性
Mesophile
A mibrobial organism that thrives at moderate temperature, typically between 20 and 45 C (68 and 113 F).
Alkalitolerant
Euryhaline
広塩性の
Stenohaline
狭塩性の
Metabolism related phenotype
Oxygen requirement
Aerobe
好気性微生物
Anaerobe
嫌気性微生物
Obligate aerobe
偏性好気性微生物
Facultative aerobe
通性好気性微生物
Obligate anaerobe
偏性嫌気微生物
Facultative anaerobe
通性嫌気微生物
Aerotolerant organism
Microaerophile
微好気性生物
Energy source
Autotrophic
独立栄養
Autotroph
Heterotrophic
従属栄養性
Heterotroph
Lithotrophic
無機栄養性
Lithotroph
無機栄養細菌
Methanotrophic
Methanotroph
Methylotrophic
Methylotroph
Oligotrophic
Oligotroph
Organotrophic
有機栄養の
Organotroph
Diazotrophic
ジアゾ栄養生物
Diazotroph
Phototrophic
光栄養
Phototroph
Photosynthetic
光合成の
Photosynthetic microbe
Mixotrophic
Mixotroph
Chemotrophic
化学合成生物
Chemotroph
Microanaerobe
Copiotrophic
Copiotroph
Photoorganotrophic
Photoorganotroph
Photolithotrophic
Photolithotroph
Photoheterotrophic
光従属栄養
Photoheterotroph
Photoautotrophic
光独立栄養
Photoautotroph
Photoorganoheterotrophic
Photoorganoheterotroph
Photoorganoautotrophic
Photoorganoautotroph
Photolithoheterotrophic
Photolithoheterotroph
Photolithoautotrophic
Photolithoautotroph
Chemoorganotrophic
Chemoorganotroph
Chemolithotrophic
Chemolithotroph
Chemoheterotrophic
Chemoheterotroph
Chemoautotrophic
Chemoautotroph
Chemoorganoheterotrophic
Chemoorganoheterotroph
Chemoorganoautotrophic
Chemoorganoautotroph
Chemolithoheterotrophic
Chemolithoheterotroph
Chemolithoautotrophic
独立栄養化学合成性
Chemolithoautotroph
独立栄養化学合成細菌
Lithoautotrophic
Lithoautotroph
Lithoheterotrophic
Lithoheterotroph
Carboxydotrophic
Carboxydotroph
Any organism that can tolerate a high concentration of carbon monoxide
Auxotrophic
栄養要求株
Capnophilic
Capnophile
Fermentation
Alcohol fermentation
Acetate fermentation
Lactate fermentation
Aceton-butanol fermentation
Phagotrophic
摂食栄養
Assimilation
Catabolism
Dissimilatory process
Nitrogen fixation
Biosynthesis
Lipid
Quinone
Benzoquinone
Naphthoquinone
MK-4
Menaquinone-4
MK-5
Menaquinone-5
MK-6
Menaquinone-6
MK-7
Menaquinone-7
MK-8
Menaquinone-8
MK-9
Menaquinone-9
MK-10
Menaquinone-10
MK-11
Menaquinone-11
MK-12
Menaquinone-12
MK-13
Menaquinone-13
MK-14
Menaquinone-14
MK-n
Menaquinone-n
Menaquinone
DMK
Demethylmenaquinone
DMK-5
Demethylmenaquinone-5
DMK-6
Demethylmenaquinone-6
DMK-7
Demethylmenaquinone-7
DMK-8
Demethylmenaquinone-8
MTK
Methionaquinone-7
MTK-7
Q-3
Ubiquinone-3
Q-4
Ubiquinone-4
Q-5
Ubiquinone-5
Q-6
Ubiquinone-6
Q-7
Ubiquinone-7
Q-8
Ubiquinone-8
Q-9
Ubiquinone-9
Ubiquinone-10
Ubiquinone-11
Ubiquinone-12
Ubiquinone-13
Ubiquinone-14
Ubiquinone
MQ-8
MDMQ
MDMQ-6
11-methylene-18-dimethyl-ubiquinone-6
TPQ
Thermoplasma quinone
TPQ-6
Thermoplasma quinone-6
TPQ-7
Thermoplasma quinone-7
MK-5(H2)
Menaquinone-5(H2)
MK-6(H2)
Menaquinone-6(H2)
MK-8(H2)
Menaquinone-8(H2)
MK-8(H4)
Menaquinone-8(H4)
MK-9(H0)
Menaquinone-9(H0)
MK-9(H2)
Menaquinone-9(H2)
MK-9(H4)
Menaquinone-9(H4)
MK-9(H6)
Menaquinone-9(H6)
MK-9(H8)
Menaquinone-9(H8)
MK-10(H4)
Menaquinone-10(H4)
MK-10(H6)
Menaquinone-10(H6)
MK-10(H8)
Menaquinone-10(H8)
MK-11(H6)
Menaquinone-11(H6)
MTK-7(H2)
Methionaquinone-7(H2)
MTK-7(H4)
Methionaquinone-7(H4)
TMK
TMK-6
RQ-8
Rhodoquinone-8
RQ-10
Rhodoquinone-10
MK-10(H2)
Menaquinone-10(H2)
MK-10(H0)
Menaquinone-10(H0)
MK-11(H4)
Menaquinone-11(H4)
MK-11(H2)
Menaquinone-11(H2)
MK-4(H6)
Menaquinone-4(H6)
MK-4(H8)
MK-5(H8)
Menaquinone-5(H8)
MK-5(H10)
Menaquinone-5(H10)
MK-6(H4)
Menaquinone-6(H4)
MK-6(H8)
Menaquinone-6(H8)
MK-6(H10)
Menaquinone-6(H10)
MK-7(H0)
Menaquinone-7(H0)
MK-7(H2)
Menaquinone-7(H2)
MK-7(H4)
Menaquinone-7(H4)
MK-7(H14)
Menaquinone-7(H14)
MK-8(H6)
Menaquinone-8(H6)
MK-9(H10)
MMK
Methylmenaquinone
MMK-5
Methylmenaquinone-5
MMK-6
Methylmenaquinone-6
MMK-7
Methylmenaquinone-7
MMK-8
Methylmenaquinone-8
MMK-5(H10)
Methylmenaquinone-5(H10)
MMK-6(H12)
Methylmenaquinone-6(H12)
MTK-6
Ubiquinone-10(H2)
Ubiquinone-10(H4)
Smaragdiquinone
SQA-8
Smaragdiquinone A-8
SQB-8
Smaragdiquinone B-8
Organoheterotrophic
Organoheterotroph
Obligate chemolithoautotrophic
偏性独立栄養化学合成性
Obligate chemoautolithotroph
Obligate chemolithoautotroph
偏性独立栄養化学合成細菌
Development
Resting spore forming
休眠胞子形成
Akinete forming
アキネート形成
Hetelocyst forming
Serotype
Staining
Cell staining
細胞染色
Gram stain
グラム染色
Gram positive
グラム陽性
Gram+
Gram negative
グラム陰性
Gram-
Gram variable
Ziehl–Neelsen stain
抗酸染色
acid-fast stain
Cell accumulation
Algae bloom
水の華
Red tide
赤潮
Cyanobacterial water bloom
アオコ
Way of life
Planktonic
Benthic
Epilithic
Lithophyte
Aerial
show phenotypes
show cell shape
oxygen requirement
temperature range
growth pH
optimal growth pH
minimum growth pH
maximum growth pH
growth temperature
optimal growth temperature
minimum growth temperature
maximum growth temperature
pH preference
show motility
salinity preference
show cell arrangement
produce quinones
produce antibiotics
representative morphology
minimum optimal growth temperature
maximum optimal growth temperature
minimum optimal growth ph
maximum optimal growth ph
staining
evergy source
energy source
show morphology
primary nutritional groups
growth salinity
maximal growth salinity
minimum growth salinity
optimal growth salinity
maximum optimal growth salinity
minimum optimal growth salinity
is inhabited by
Sexual reproduction
Heterothallic
自家不和合性
Homothallic
自家和合性
Isogamy
同形配偶
Anisogamy
異型配偶
Heterogamy
Dioecious
雌雄異体の
Monoecious
testProperty