------------------------------------------------------------------------------------------------------
                        FUNCTIONAL CLASSIFICATIONS FOR VARIATIONS IN GENES
           WHERE VARIATION HAS FUNCTIONAL CLASS IN AT LEAST ONE TRANSCRIPT MODEL FOR THE GENE
                          HUMAN BUILD 36_1  , ASSEMBLY c6_QBL       , dbSNP BUILD   126
------------------------------------------------------------------------------------------------------

DEFINITIONS:
  Models in gene:    Number of transcript models (splice variants) known for the gene
    Locus region:    Variations within 3 kb 5' or 500 bp 3' of the longest aligned mRNA for gene
     5' / 3' UTR:    Variation mapped to UTR region of a trancript for the gene
          Intron:    Variation mapped to intron (but not splice site) of a transcript for the gene
     Splice site:    Variation mapped to first two, or last two bases of an intron of a transcript
   Coding region:    Variation mapped to coding region of a transcript for the gene
      Contig ref:    One allele known for variation was observed in contig reference sequence
    Synon change:    One allele for variation is different from contig, but amino acid is the same
 Nonsynon change:    One allele for variation is different from contig and encodes a different amino acid
 Align Exception:    Part of the transcript sequence was not found on contig, translation not possible

                              -------------------------------------  ---------------------------------
                              Functional Classes based on position    Coding classes based on allele
                      Models  -------------------------------------  ---------------------------------
  Gene        Locus     in    Locus   5'/3'          Splice  Coding  Contig  Synon   NonSyn  Alignment
 Symbol         ID     Gene   Region  UTRs   Intron   Site   Region    Ref   Change  Change  Exception
------------ -------  ------  ------  -----  ------  ------  ------  ------  ------  ------  ---------
3.8-1.5       353010      1       63      0       0      0        0       0       0       0        0
ABCF1             23      3        8      6      58      0        5       5       1       4        0
AGER             177      3       37      0      22      0        6       6       2       5        0
AGPAT1         10554      3       12     26       2      0        3       3       2       1        0
AIF1             199      4       10      3       7      0        3       3       0       3        0
APOM           55937      2       12      1       5      0        1       1       0       0        0
ATP6V1G2         534      3       15      9       6      0        0       0       0       0        0
B3GALT4         8705      2       14      3       0      0        4       4       3       1        0
BAT1            7919      3       15     17      72      0        3       3       1       2        0
BAT2            7916      3       24     22      63      0       41      40      15      26        0
BAT3            7917      4       14     10      50      0        8       8       2       6        0
BAT4            7918      2       18      5       5      0        6       6       3       3        0
BAT5            7920      2        9      2      49      0        5       5       4       1        0
BF               629      2        9      2      19      0       18      18       9       9        0
BRD2            6046      2       11     39      55      0       20      20      14       6        0
BTNL2          56244      2       31      0     113      0       14      13       3      11        0
C2               717      2       11      0     248      1        5       5       1       4        0
C4B              721      2       16      3     106      0       66      66      27      39        0
C6orf10        10665      2       24      6     871      0       14      14       1      13        0
C6orf134       79969      3        6     10      77      0        2       2       1       1        0
C6orf136      221545      2        5      8      18      1        1       1       1       0        0
C6orf15        29113      2       50      2       2      0       17      17       6      11        0
C6orf205      394263      2       12      8      68      0        0       0       0       0        0
C6orf21       259215      2       13      0      11      0        5       5       0       5        0
C6orf25        80739      8        6      2       5      0        4       4       3       1        0
C6orf47        57827      2       18      7       0      0        2       2       0       2        0
C6orf48        50854      2       18      9      25      0        0       0       0       0        0
CCHCR1         54535      2       29      6     135      1       23      23       9      14        0
CDSN            1041      2       34     16      44      0       27      23      15      13        0
CLIC1           1192      2       10      6      13      0        4       4       2       2        0
COL11A2         1302      4       21      4     117      0       21      21      12       9        0
CSNK2B          1460      2       14      6       4      0        3       3       1       2        0
CYP21A2         1589      2       37     14      31      0       28      28      12      16        0
D6S2723E       10470      1       11      0       0      0        0       0       0       0        0
DAXX            1616      2       21     10       5      0        6       6       4       2        0
DDAH2          23564      2       11      7       2      1        1       1       1       0        0
DDR1             780      2       17     26      73      1        9       9       6       3        0
DHX16           8449      2       11      3      49      0        7       7       2       5        0
DOM3Z           1797      2       12      3       9      0        7       7       0       7        0
DPCR1         135656      2        6      7       0      0        4       3       0       4        0
EGFL8          80864      2       13      0       1      0        3       3       0       3        0
EHMT2          10919      3       10      3      49      0        7       7       5       2        0
ETF1P1          6824      1       42      0       0      0        0       0       0       0        0
FLJ35429      285830      2       34     61     130      0        4       4       0       4        0
FLJ45422      441140      2       17     47      29      0        9       9       3       5        0
FLOT1          10211      2       12      6      70      0        5       5       2       2        0
GABBR1          2550      5       15     40     159      0       11      11       6       5        0
GNL1            2794      2        2      2      15      0        6       6       4       2        0
GPR53P          9292      1       29      0       0      0        0       0       0       0        0
GPSM3          63940      2       13     12       1      0        2       2       1       1        0
GTF2H4          2968      2       28      8      22      0        8       8       5       3        0
HCG18         414777      2        5     17     145      0        0       0       0       0        0
HCG22         285834      2       52      0      20      0       14      14       4       9        0
HCG27         253018      2       70     96       3      0        0       0       0       0        0
HCG2P8        353012      1       86      0       0      0        0       0       0       0        0
HCG4P10       353017      1       55      0       0      0        0       0       0       0        0
HCG4P6         80868      1      117      0       0      0        0       0       0       0        0
HCG9           10255      2       71     73       0      0        6       6       2       4        0
HCP5P12       353011      1       80      0       0      0        0       0       0       0        0
HCP5P14       353018      1       67      0       0      0        0       0       0       0        0
HKE2           10471      2       11      0       2      0        1       1       1       0        0
HLA-75        352962      1       67      0       0      0        0       0       0       0        0
HLA-90        352963      1      126      0       0      0        0       0       0       0        0
HLA-DMA         3108      2        8      5      14      0        7       7       1       6        0
HLA-DMB         3109      2       16      7      24      0        7       7       0       7        0
HLA-DOA         3111      2       19     24      18      0        7       7       6       1        0
HLA-DPA1        3113      2       27     61      45      0       41      41      15      26        0
HLA-DPB1        3115      2       32     63     240      0       61      61      19      42        0
HLA-DPB2        3116      1      300      0       0      0        0       0       0       0        0
HLA-DQA1        3117     11       97     70     142      0       23      23      11      12        0
HLA-DQA2        3118      2       65     18      81      0       12      12       5       7        0
HLA-DQB1        3119      2      153     45     515      4      317     316      74     251        0
HLA-DQB2        3120      2       29      7      74      0        6       6       3       3        0
HLA-DRA         3122      2       56     27      48      0        5       5       3       2        0
HLA-DRB3        3125      2       46     35     513      0        0       0       0       0        0
HLA-DRB4        3126      2      123     60     938      0        0       0       0       0        0
HLA-E           3133      2       29      3       3      0       15      15       6      10        0
HLA-F           3134      2       52      0      29      1        8       8       3       5        0
HLA-G           3135      2       39     15      34      0       22      20      13       9        0
HLA-H           3136      1      329      0       0      0        0       0       0       0        0
HLA-L           3139      1       76      0       0      0        0       0       0       0        0
HSD17B8         7923      2        6      0       7      0        0       0       0       0        0
HSPA1A          3303      2       13      4       0      0       16      16      10       6        0
HSPA1B          3304      2       13     17       0      0       11      11       5       6        0
HSPA1L          3305      2       24     11       0      0       11      11       4       7        0
IER3            8870      3        9      7       2      0        2       2       0       2        0
IFITM4P       340198      1       36      0       0      0        0       0       0       0        0
KIAA1949      170954      4       12      6      20      0        5       5       2       3        0
KIFC1           3833      2        5      5      79      0        4       4       0       4        0
KRT18P1         3879      1       34      0       0      0        0       0       0       0        0
LOC401242     401242      1       23      0       0      0        0       0       0       0        0
LOC401252     401252      2       32     33      98      0        7       7       3       3        0
LOC442195     442195      1       12      0       0      0        0       0       0       0        0
LOC554223     554223      1      136      0       0      0        0       0       0       0        0
LOC642047     642047     32      102   1555    1748     13      352     342      72     297        0
LOC642049     642049      3       88     83      30      0       22      22       5      17        0
LOC642050     642050      1       68      0       0      0        0       0       0       0        0
LOC642051     642051      2       10      1      13      0        2       2       0       2        0
LOC642053     642053      1       12      0       0      0        0       0       0       0        0
LOC642056     642056      1        8      0       0      0        0       0       0       0        0
LOC642059     642059      1       51      0       0      0        0       0       0       0        0
LOC642060     642060      2       84      0       0      0        5       5       2       3        0
LOC642061     642061      2       92      0       0      0        5       5       1       4        0
LOC642062     642062      2        6     17       0      0        1       1       1       0        0
LOC642063     642063      1       22      0       0      0        0       0       0       0        0
LOC642065     642065      2        6      0       0      0        1       1       1       0        0
LOC642066     642066      1       14      0       0      0        0       0       0       0        0
LOC642067     642067      2      255      0       0      0       10      10       2       6        0
LOC642068     642068      2       16      0       0      0        5       4       1       4        0
LOC642069     642069      1      452      0       0      0        0       0       0       0        0
LOC642071     642071      2       41      0       0      0        2       2       1       1        0
LOC642072     642072      2       69      0      67      0        9       9       4       5        0
LOC642073     642073      1       65      0       0      0        0       0       0       0        0
LOC642074     642074      1      196      0       0      0        0       0       0       0        0
LOC642075     642075      2       11      0      21      0        2       2       1       1        0
LOC642076     642076      2        4      0      41      0        8       8       2       6        0
LOC653871     653871      2       14     10      51      0        3       3       1       2        0
LSM2           57819      2        8      2      29      0        0       0       0       0        0
LST1            7940      6       13     19      11      0        0       0       0       0        0
LTA             4049      2       29     13       3      0        3       3       1       2        0
LTB             4050      3       19      8      13      0        7       7       3       5        0
LY6G5B         58496      2       10      0       3      0        5       5       2       3        0
LY6G5C         80741      4        6     16      17      0        2       2       0       2        0
LY6G6C         80740      2        7      2       5      0        3       3       1       2        0
LY6G6D         58530      2       11      0      10      0        3       3       1       2        0
LY6G6E         79136      2       17      0       7      0        0       0       0       0        0
LYPLA2P1      285840      1       19      0       0      0        0       0       0       0        0
MAS1L         116511      2       10      0       0      0        3       3       2       1        0
MCCD1         401250      2       30      6       9      0        3       3       1       2        0
MDC1            9656      2       10      8      46      0       33      33      11      22        0
MICA            4276      2       32      7     152      0       70      66      19      52        0
MICB            4277      2       48      4     143      0       10      10       1       9        0
MICC          221549      1      104      0       0      0        0       0       0       0        0
MICE            4280      1      136      0       0      0        0       0       0       0        0
MICG          352967      1       39      0       0      0        0       0       0       0        0
MOG             4340     10       10     65     144      0        6       6       4       2        0
MRPS18B        28973      2        4      1      24      0        2       2       0       2        0
MSH5            4439      2       19     10     123      0       11      11       4       7        0
NCR3          259197      2       28      5      10      0        6       6       4       2        0
NEU1            4758      2        9      6       0      0        7       7       1       6        0
NFKBIL1         4795      2       16      2      67      0        2       2       1       1        0
NOTCH4          4855      2       22      3     174      0       49      49      25      24        0
NRM            11270      2        5      3       9      0        2       2       1       1        0
OR10C1        442194      2        5      0       0      0       18      18       4      14        0
OR11A1         26531      2       14      5       0      0        4       4       2       2        0
OR12D1P        26530      1       32      0       0      0        0       0       0       0        0
OR2AD1P        79313      1       11      0       0      0        0       0       0       0        0
OR2B3         442184      1        5      0       0      0        0       0       0       0        0
OR2G1P         26717      1        3      0       0      0        0       0       0       0        0
OR2H1          26716      2        5     17       0      0        3       3       1       2        0
OR2H2           7932      2        8      0       0      0        4       4       1       3        0
OR2H4P        442189      1       16      0       0      0        0       0       0       0        0
OR2H5P         26713      1       15      0       0      0        0       0       0       0        0
OR2I1P        442197      1       34      0       0      0        0       0       0       0        0
OR2J1         442185      1       16      0       0      0        0       0       0       0        0
OR2J2          26707      2       10      0       0      0        6       6       2       4        0
OR2J3         442186      2       13      0       0      0        4       4       0       4        0
OR2J4P        442188      1       18      0       0      0        0       0       0       0        0
OR2N1P         26701      1        9      0       0      0        0       0       0       0        0
OR2P1P        442183      1        8      0       0      0        0       0       0       0        0
OR2W1          26692      2       10      0       0      0        3       3       3       0        0
PBX2            5089      2        7     32      20      0       12      12       5       7        0
POU5F1          5460      3       29     11      58      0       26      26      14      12        0
PPIAP9          5491      1       37      0       0      0        0       0       0       0        0
PPP1R10         5514      2       13     26      25      0        5       5       2       3        0
PPP1R11         6992      3       15     17      12      0        2       2       2       0        0
PPP1R2P1        5505      1       68      0       0      0        0       0       0       0        0
PPT2            9374      3        9      5      44      0        3       3       1       2        0
PRR3           80742      2        3      2      10      0        0       0       0       0        0
PRRT1          80863      2       11      0       5      0        1       1       1       0        0
PSMB8           5696      3       16      5       8      0        4       4       2       2        0
PSMB9           5698      3       12      3      31      0        4       4       1       3        0
PSORS1C1      170679      2       51    242     137      0        0       0       0       0        0
PSORS1C2      170680      2       44     11      11      0        4       4       0       4        0
PTMAP1          5758      1       24      0       0      0        0       0       0       0        0
RANP1         221547      1       30      0       0      0        0       0       0       0        0
RDBP            7936      2       14      6      15      0        2       2       0       2        0
RFP             5987      3       20      6      92      0        2       2       1       1        0
RGL2            5863      2        6      3       4      0        3       3       3       0        0
RING1           6015      2        5      6       7      0        2       2       2       0        0
RNF39          80352      4       22     11      34      0       12      12       3       9        0
RNF5            6048      2        7     12       6      0        3       3       3       0        0
RPL23AP1        6148      1       40      0       0      0        0       0       0       0        0
RPL32P1         6163      1       46      0       0      0        0       0       0       0        0
RPL3P2        116935      1      102      0       0      0        0       0       0       0        0
RPP21          79897      2        9      2       5      1        4       4       2       2        0
RPS18           6222      2       17      2      24      0        7       7       2       5        0
RXRB            6257      2       15     10      38      0        5       5       3       2        0
SFTPG         389376      2       27      4       5      0        2       2       1       1        0
SKIV2L          6499      2       10      2      27      1       15      15       7       8        0
SLC39A7         7922      2       11      1      13      0        0       0       0       0        0
SLC44A4        80736      3        9      1      63      0       10      10       3       7        0
STK19           8859      3       18      2      43      0        4       4       2       2        0
SUMO2P        285829      1       34      0       0      0        0       0       0       0        0
TAP1            6890      2       19      4      43      0       18      17       7      11        0
TAP2            6891      3       14     43     133      1       20      20      10      10        0
TAPBP           6892      4       12     21      58      0        5       5       1       4        0
TCF19           6941      2       27      0      27      0        0       0       0       0        0
TNF             7124      2       36     10      14      0        6       6       2       4        0
TNXB            7148      2       14     12      43      0       34      34      12      22        0
TRIM10         10107      3       19     36      49      0        9       9       4       5        0
TRIM15         89870      3       20      3      33      1       11      11       4       7        0
TRIM26          7726      2       20    115      74      0        6       6       4       2        0
TRIM31         11074      3       18     46      77      1       12      12       8       5        0
TRIM39         56658      3        9     12      43      0        3       3       3       0        0
TRIM40        135644      2       25      6     107      0        4       4       0       4        0
TRK1            7206      1       10      0       0      0        0       0       0       0        0
TRQ1            7228      1        7      0       0      0        0       0       0       0        0
TUBB          203068      2       12     34      10      0       33      33      11      22        0
UBD            10537      2       10      5      16      0        9       9       2       7        0
VARS            7407      3        9      0       6      0        4       4       1       3        0
VARSL          57176      2       20      7      48      0       17      17      10       7        0
VPS52           6293      2       14      6      73      0        4       4       2       2        0
WDR46           9277      2       10      1      33      0        6       6       2       4        0
ZBTB12        221527      2       12      6       0      0        5       5       1       4        0
ZFP57         346171      2       56     43      51      0        3       3       0       3        0
ZNF297          9278      2       23      9       0      0        5       5       2       3        0
ZNF311        282890      2       14      6      25      0        2       2       0       2        0
ZNRD1          30834      3       21      7      26      0        2       2       1       1        0

Report generated at Mon Apr 17 16:35:47 2006
