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                        FUNCTIONAL CLASSIFICATIONS FOR VARIATIONS IN GENES
           WHERE VARIATION HAS FUNCTIONAL CLASS IN AT LEAST ONE TRANSCRIPT MODEL FOR THE GENE
                          HUMAN BUILD 36_1  , ASSEMBLY DR53         , dbSNP BUILD   126
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DEFINITIONS:
  Models in gene:    Number of transcript models (splice variants) known for the gene
    Locus region:    Variations within 3 kb 5' or 500 bp 3' of the longest aligned mRNA for gene
     5' / 3' UTR:    Variation mapped to UTR region of a trancript for the gene
          Intron:    Variation mapped to intron (but not splice site) of a transcript for the gene
     Splice site:    Variation mapped to first two, or last two bases of an intron of a transcript
   Coding region:    Variation mapped to coding region of a transcript for the gene
      Contig ref:    One allele known for variation was observed in contig reference sequence
    Synon change:    One allele for variation is different from contig, but amino acid is the same
 Nonsynon change:    One allele for variation is different from contig and encodes a different amino acid
 Align Exception:    Part of the transcript sequence was not found on contig, translation not possible

                              -------------------------------------  ---------------------------------
                              Functional Classes based on position    Coding classes based on allele
                      Models  -------------------------------------  ---------------------------------
  Gene        Locus     in    Locus   5'/3'          Splice  Coding  Contig  Synon   NonSyn  Alignment
 Symbol         ID     Gene   Region  UTRs   Intron   Site   Region    Ref   Change  Change  Exception
------------ -------  ------  ------  -----  ------  ------  ------  ------  ------  ------  ---------
HLA-DRB1        3123      2      272     73    7500      0      127     127      56      71        0
HLA-DRB4        3126      2       43     24    6314      0      120     117      41      84        0
HLA-DRB7        3129      1     1666      0       0      0        0       0       0       0        0
HLA-DRB8        3130      1     1047      0       0      0        0       0       0       0        0

Report generated at Mon Apr 17 16:19:12 2006
