LOCUS       NC_008536               2001 bp    DNA     linear   BCT 21-JUL-2008
DEFINITION  Solibacter usitatus Ellin6076, complete genome.
ACCESSION   NC_008536 REGION: 1000..3000
VERSION     NC_008536.1  GI:116619145
PROJECT     GenomeProject:12638
KEYWORDS    .
SOURCE      Solibacter usitatus Ellin6076
  ORGANISM  Solibacter usitatus Ellin6076
            Bacteria; Acidobacteria; Solibacteres; Solibacterales;
            Solibacteraceae; Solibacter.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
            Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Solibacter usitatus Ellin6076
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2001)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2001)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
            Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000473.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 3634513
            Source DNA and bacteria available from Cheryl R. Kuske
            (kuske@lanl.gov)
            Contacts: Cheryl R. Kuske (kuske@lanl.gov)
                 Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Solibacter usitatus Ellin6076"
                     /mol_type="genomic DNA"
                     /strain="Ellin6076"
                     /db_xref="taxon:234267"
     gene            <1..403
                     /locus_tag="Acid_0001"
                     /db_xref="GeneID:4431688"
     CDS             <1..403
                     /locus_tag="Acid_0001"
                     /note="KEGG: aba:Acid345_0001 chromosomal replication
                     initiator protein DnaA
                     TIGRFAM: chromosomal replication initiator protein DnaA
                     PFAM: Chromosomal replication initiator, DnaA C-terminal
                     domain; Chromosomal replication initiator, DnaA
                     SMART: AAA ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="YP_821302.1"
                     /db_xref="GI:116619146"
                     /db_xref="InterPro:IPR001957"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR013159"
                     /db_xref="InterPro:IPR013317"
                     /db_xref="GeneID:4431688"
                     /translation="MNYWDQIRHYLQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDR
                     ETRAWLETEYTQLIQGGIQALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATV
                     LNPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQL
                     IDQFGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQ
                     EEFFHTFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAI
                     LDKKAEIEGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVL
                     KHLVHVQDRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTNAS
                     LPEIGRAFGGKHHTTVIHSINKIEKDRQSDPELNRLLHSLMDSLQ"
     gene            638..1756
                     /locus_tag="Acid_0002"
                     /db_xref="GeneID:4431689"
     CDS             638..1756
                     /locus_tag="Acid_0002"
                     /EC_number="2.7.7.7"
                     /note="KEGG: aba:Acid345_0002 DNA polymerase III, beta
                     subunit
                     TIGRFAM: DNA polymerase III, beta subunit
                     PFAM: DNA polymerase III, beta chain"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III, beta subunit"
                     /protein_id="YP_821303.1"
                     /db_xref="GI:116619147"
                     /db_xref="InterPro:IPR001001"
                     /db_xref="GeneID:4431689"
                     /translation="MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITL
                     TATDLELGIRCSCPARVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGR
                     SRTRIAGMSRESFPELPQMPEPIAQVPVKTLASMIARTSFAISMEESRFTLNGALLLM
                     RPEGLTMVATDGHRLAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAI
                     VAGDDNHLFFQIGHRLLITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQF
                     ADERSRAIRVQFNSGEVRVFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAI
                     SQDHVAFELKDQKSAGELRPAGDAIADQYRYVVMPMRI"
     gene            1782..>2001
                     /locus_tag="Acid_0003"
                     /db_xref="GeneID:4431690"
     CDS             1782..>2001
                     /locus_tag="Acid_0003"
                     /EC_number="5.99.1.3"
                     /note="KEGG: aba:Acid345_0008 DNA gyrase, B subunit
                     TIGRFAM: DNA gyrase, B subunit
                     PFAM: DNA gyrase, subunit B domain protein; ATP-binding
                     region, ATPase domain protein domain protein; TOPRIM
                     domain protein; DNA topoisomerase, type IIA, subunit B,
                     region 2 domain protein
                     SMART: DNA topoisomerase II"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="YP_821304.1"
                     /db_xref="GI:116619148"
                     /db_xref="InterPro:IPR000565"
                     /db_xref="InterPro:IPR001241"
                     /db_xref="InterPro:IPR002288"
                     /db_xref="InterPro:IPR003594"
                     /db_xref="InterPro:IPR006171"
                     /db_xref="InterPro:IPR011557"
                     /db_xref="InterPro:IPR011558"
                     /db_xref="InterPro:IPR013506"
                     /db_xref="GeneID:4431690"
                     /translation="MPNEVNPVGGNGNVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMG
                     LHHLVYEVVDNSVDEALAGYATHIEVTIHDDNSVTVEDDGRGIPVGIHEEEGVSAAQV
                     VMTKLHAGGKFDSNSYKVSGGLHGVGVSCVNALSEKLELEIWREGYTWTQEYSCGKPK
                     ADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNYDTLAQRLRELAFLNKGLKITLTDER
                     VDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIHFEAEREMPEKGTITMEVALQYND
                     AYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFGQKNGLFKDVKENLSGDDVREG
                     LTAVVSVKVPQPQFEGQTKGKLNSDIAGYMTQFVNDKLSEYFDKNSAVGRKIVGKAIE
                     ASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKLCELFLVEGESAGGTAKQG
                     RERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTGIGKDDFDVAKLRYDKI
                     IIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRIKKGKSEKYIKDEKE
                     FTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQIFHKVERRLRDS
                     RAVDVLTNVDLHVDNKAEFQVEANLKPVFEAMKAKGLNPQMKKDEEHSAWAVVFHDST
                     GAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDWVELLEYVKNE
                     GKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFSTLMGEDVES
                     RRKFIEENALDVKNLDV"
ORIGIN      
        1 ccgcgaactc gaaggcgccc tggttaaatt gatcgcgtac tcctccctca ccggaacgcc
       61 gatccacctg cagatggcgc aacaggtcct gaagcacctg gtccacgtgc aggaccgccg
      121 cgtcaccatg gattccatcc aaaaggccgt cgcggagaaa ttcagcatta agcagtccca
      181 gctcaaggaa aagagcaata ccaagaaggt ggtctatccg cggcaggtgg caatgtacct
      241 ggtcaaggag ctcaccaacg cgtcgctacc tgagatcggg cgcgctttcg gcggaaagca
      301 tcacaccacc gtgatccact cgatcaacaa aatcgagaag gatcgccaga gcgaccctga
      361 attgaacagg ttactacaca gcctaatgga ctcattacaa tgaccttcca ccgttttcca
      421 caattgccct tgcaccgggc atggggaaat ctgtgtatat cgcatgacag cgttggtttt
      481 gcgcaatttt ccgcgccgca atccgcagct tgacgtagca gaaagtggct gagtttagta
      541 taatttagat agtcttcaac actttgcaca gggcctatga atacggttat ttatcaggcc
      601 tatctataga gacagcaaag aactaggagc cgtgggcatg gaattcaccg tcagcaagag
      661 cgatctggta cgtgagctga gtctctcgca gggtgtggtg gaaaaaaaga ccaccattcc
      721 aatcctgtcg aacgtgctcc tggaggccgc ggacgatcgc attacgttga ctgcgaccga
      781 cctggaactg ggcatccgct gttcttgccc ggcgcgcgtc aagaaagaag ggtccggcac
      841 ggtgccggcg cgcaaactgc tcgattacat gcgtctgttg cccgaaggcg acgtgaacat
      901 gaagttcctg gacaatcact gggccagtat caccagcgga cgttctcgca ccaggattgc
      961 gggcatgtcg cgcgagagct tccccgaact gccgcagatg ccggagccga tcgcgcaggt
     1021 gcccgtcaaa acgctggcct ccatgatcgc ccgtacgtcc ttcgccatct ccatggagga
     1081 gtcgcgcttt acgctcaacg gcgcgctcct gctgatgcgc cccgaaggcc tcaccatggt
     1141 cgccaccgat ggccaccgcc tcgcctacgt gcaggccgag cccgcggaga gcggcagcgc
     1201 cgacaaaccc ttccgcgccc tcgtccccaa gaaggcgatg agcgaattga ccaagctcag
     1261 cgatgatgcc ggcgaaggcg ccatggccat cgtcgccggt gatgacaatc acctgttctt
     1321 ccaaattggc caccgcctgc tgatcacgcg aaagctcacc ggcaacttcc cggattacga
     1381 gcgcgtcttg cccaaagatc accagttcat ggccaagctc gagaagggcg aaatccgctc
     1441 ggcaatcgaa cgcgtggcgc agttcgccga tgaacggtcg cgcgccattc gggtgcaatt
     1501 caacagcggc gaagtccgcg tcttcagttc cagcgtcgaa accggcgaga gcgaagagag
     1561 cgttcccgcc gagtacacgg gtcccgatat cgagatcggt ttcaatgccc aatacctgct
     1621 cgatttcctg cgtgcgattt ctcaggatca cgttgccttc gaattgaagg atcaaaaaag
     1681 cgcgggcgaa ctccgtcccg ccggcgatgc catcgcggac cagtaccgct atgtagtcat
     1741 gccgatgcgt atttgaagtt tagtcaaacc agtaaggaac tatgccaaac gaagtcaatc
     1801 ccgtcggggg aaatggaaac gtctacgatt ccagcagtat caaagtcctg gaaggcctcg
     1861 aagcagtgcg cctgcgccct gccatgtaca tcgggtctac aggcgagatg gggctgcacc
     1921 atctggtcta tgaggtcgtc gataattccg tcgatgaagc tctagccggc tacgccaccc
     1981 atatcgaggt gacgatccac g
//

