BIND
comment: Biomolecular Interaction Network Database

ChEBI

Ensembl

Enzyme Nomenclature
comment: Enzyme Classification
comment: EC code
comment: EC

UniProt Knowledgebase
comment: UniProtKB
comment: UniProt
comment: Protein Knowledgebase
comment: UniProt-TrEMBL
comment: UniProt/TrEMBL
comment: UniProtKB/Swiss-Prot

Taxonomy
comment: NEWT
comment: NCBI taxonomy

BioModels Database
comment: BioModels

MIRIAM Registry collection
comment: MIRIAM Resources
comment: MIRIAM

ICD

IntAct

InterPro

KEGG Pathway
comment: KEGG

KEGG Compound
comment: KEGG

KEGG Reaction
comment: KEGG

PubMed

OMIM
comment: Online Mendelian Inheritance in Man
comment: Mendelian Inheritance in Man
comment: MIM

PIRSF
comment: Protein Information Resource

Reactome
comment: Reactome Stable ID

DOI
comment: Digital Object Identifier

Protein Data Bank
comment: PDB

CluSTr

Gene Ontology
comment: GO

SGD
comment: Saccharomyces Genome Database

Systems Biology Ontology
comment: SBO

KEGG Drug
comment: KEGG

KEGG Glycan
comment: KEGG

WormBase

Pfam
comment: Protein Family Database

Nucleotide Sequence Database
comment: International Nucleotide Sequence Database Collaboration
comment: INSDC
comment: NCBI nucleotide
comment: GenBank

FlyBase

Wormpep

PROSITE

PubChem-substance
comment: PubChem Substance
comment: PubChem SID

PubChem-compound
comment: PubChem Compound
comment: PubChem CID

arXiv

ArrayExpress

Mouse Genome Database
comment: MGD
comment: MGI
comment: Mouse Genome Informatics

SABIO-RK Reaction

RefSeq

Transport Classification Database
comment: TCDB

UniParc

MINT

IPI
comment: International Protein Index

Database of Interacting Proteins
comment: DIP

Signaling Gateway
comment: SGMP
comment: Signaling Gateway Molecule Pages
comment: AfCS
comment: UCSD Signaling Gateway Molecule Pages
comment: UCSD - Molecule Pages

RESID

Rat Genome Database
comment: RGD

TAIR Protein

TAIR Gene

TAIR Locus

HMDB
comment: Human Metabolome Database

LIPID MAPS
comment: LMSD

PeptideAtlas

GEO
comment: Gene Expression Omnibus

Evidence Code Ontology
comment: ECO

Protein Modification Ontology
comment: PSI-MOD
comment: MOD

Saccharomyces genome database pathways

BioGRID

MEROPS

PANTHER Family

PRINTS
comment: SPRINT

Ligand Expo
comment: Ligand Depot

Aclame

ISBN

PRIDE

3DMET

FMA
comment: Foundational Model of Anatomy Ontology

MatrixDB

NCBI Gene
comment: Entrez Gene

KEGG Genes
comment: KEGG

BRENDA

PubChem-bioassay

Pathway Commons

HOVERGEN

Melanoma Molecular Map Project Biomaps
comment: MMMP Biomaps

WikiPathways

MACiE

miRBase Sequence

ZFIN Gene

HGNC
comment: HUGO Gene Nomenclature Committee

Sequence Ontology
comment: SO
comment: Sequence Types and Features

Rhea

Unipathway

ChEMBL compound

ChEMBL target

SABIO-RK Kinetic Record

Ligand-Gated Ion Channel database
comment: LGICdb

Anatomical Therapeutic Chemical
comment: ATC

PharmGKB Pathways

PharmGKB Disease

PharmGKB Drug

TTD Drug
comment: Therapeutic Target Database

TTD Target

NeuronDB

NeuroMorpho

ChemIDplus

BioSystems

CTD Chemical

CTD Disease

CTD Gene

BioNumbers

DrugBank

T3DB
comment: Toxin and Toxin Target Database

Small Molecule Pathway Database
comment: SMPDB

PhosphoSite Protein
comment: PhosphoSitePlus

GeneDB

TEDDY

KiSAO
comment: Kinetic Simulation Algorithm Ontology

Molecular Interactions Ontology
comment: MI

Cell Type Ontology
comment: Cell Ontology
comment: CL

Brenda Tissue Ontology
comment: BTO

PATO

Chemical Component Dictionary
comment: PDBeChem
comment: PDB-CCD

GlycomeDB

LipidBank

KEGG Orthology
comment: KEGG

ProDom

SMART

Conserved Domain Database
comment: CDD

Relation Ontology

Molecular Modeling Database
comment: MMDB
comment: Entrez Structure

IMEx

iRefWeb

Microbial Protein Interaction Database
comment: MPID

PhosphoSite Residue

NeuroLex
comment: BIRNLex
comment: NIFSTD

Ontology for Biomedical Investigations
comment: OBI

SABIO-RK EC Record
comment: SABIO-RK Enzyme Classification Record

Ontology of Physics for Biology
comment: OPB

JWS Online
comment: JWS

ModelDB

SubtiWiki

NCI Pathway Interaction Database: Pathway
comment: NCI_Nature
comment: PID
comment: Pathway Interaction Database NCI-Nature Curated Data
comment: NCI-Nature PID
comment: NCI-Nature Pathway Interaction Database
comment: NCI_Nature curated

Database of Quantitative Cellular Signaling: Model
comment: DOQCS Model

Database of Quantitative Cellular Signaling: Pathway
comment: DOQCS Pathway

Unit Ontology
comment: UO

ClinicalTrials.gov
comment: NCT

ChemSpider

NCIt
comment: NCI thesaurus
comment: National Cancer Institute Thesaurus

BioCatalogue

Protein Ontology

OMIA
comment: Online Mendelian Inheritance in Animals

ChemBank

CSA
comment: Catalytic Site Atlas

Candida Genome Database
comment: CGD

AntWeb

PMC International
comment: PubMed Central
comment: PMCI

AmoebaDB

CryptoDB

PlasmoDB

GiardiaDB

MicrosporidiaDB

ToxoDB

TrichDB

TriTrypDB
comment: Kinetoplastid Genomics Resource

BDGP insertion DB
comment: BDGP gene disruption

BeetleBase

BOLD Taxonomy

dbEST
comment: Database of Expressed Sequence Tags
comment: NCBI EST

dbProbe

dbSNP

UniSTS
comment: dbSTS

EcoGene

GABI
comment: GABI PD

GreenGenes

GRIN Plant Taxonomy
comment: GRIN Taxonomy for Plants
comment: Germplasm Resources Information Network Plant Taxonomy

H-InvDb Locus

H-InvDb Transcript

H-InvDb Protein

HOMD Sequence Metainformation
comment: Human Oral Microbiome Database

HOMD Taxonomy

IRD Segment Sequence
comment: Influenza Research Database Segment

ISFinder
comment: Insertion Sequence Finder

Japan Collection of Microorganisms
comment: JCM

Integrated Microbial Genomes Taxon
comment: IMG Taxon

Integrated Microbial Genomes Gene

MaizeGDB Locus

MycoBank

NITE Biological Research Center Catalogue
comment: NBRC Catalogue

Pseudomonas Genome Database
comment: PGD
comment: Pseudocap

Gramene protein

Gramene genes

Gramene Taxonomy

Gramene QTL

Sol Genomics Network
comment: SGN

Xenbase

BioPortal

MIRIAM Registry resource

EDAM Ontology
comment: EMBRACE Data and Methods Ontology

Protein Model Database
comment: PMDB

2D-PAGE protein
comment: 2D-PAGE E. coli

AGD
comment: Ashbya Genome Database

ArachnoServer

BioCyc

CAZy
comment: Carbohydrate-Active enzYmes

GOA
comment: Gene Ontology Annotation
comment: UniProtKB-GOA

PaleoDB
comment: Paleobiology database

Compulyeast
comment: Compluyeast-2D-DB

DisProt

EchoBASE

eggNOG

Ensembl Bacteria
comment: Ensembl Genomes Bacteria

Ensembl Protists
comment: Ensembl Genomes Protists

Ensembl Metazoa
comment: Ensembl Genomes Metazoa

Ensembl Plants
comment: Ensembl Genomes Plants

Ensembl Fungi
comment: Ensembl Genomes Fungi

HCVDB
comment: euHCVDB

Genatlas

CATH superfamily

CATH domain

GeneFarm

GPCRDB
comment: G protein-coupled receptor database

HOGENOM

GeneTree
comment: Ensembl GeneTree

HSSP
comment: Homology-derived Structure of Proteins

MycoBrowser tuberculosis
comment: TubercuList

MycoBrowser leprae
comment: Leproma

MycoBrowser marinum
comment: marinolist

MycoBrowser smegmatis
comment: smegmalist

Orphanet
comment: Orpha

OrthoDB

Peroxibase

PhylomeDB

SubstrateDB
comment: PMAP substrateDB

CutDB
comment: PMAP cutDB

ProtClustDB
comment: Protein Clusters Database
comment: Entrez ProtClustDB

PMP
comment: Protein Model Portal

ProtoNet ProteinCard

ProtoNet Cluster

REBASE
comment: Restriction Enzyme Database

SWISS-MODEL

VectorBase

Human Disease Ontology
comment: DO

Cell Cycle Ontology

miRBase mature sequence

nextProt

CAS
comment: Chemical Abstracts Service
comment: CAS Registry Number
comment: CAS Number
comment: CASRN

KEGG Genome
comment: KEGG Organism
comment: KEGG

KEGG Metagenome
comment: KEGG

NARCIS
comment: National Academic Research and Collaborations Information System

Japan Chemical Substance Dictionary

Pathway Ontology

Sequence Read Archive

ScerTF

PharmGKB Gene

miRNEST

NAPP
comment: Nucleic Acid Phylogenetic Profiling

NONCODE v3

VIRsiRNA
comment: Virus siRNA database
comment: VIRsiRNAdb

ELM
comment: Eukaryotic Linear Motifs

MimoDB
comment: Mimotope Database
comment: BDB
comment: Biopanning Data Bank

SitEx

BYKdb
comment: Bacterial protein tYrosine Kinase database

Conoserver

TopFind

MIPModDB

Cell Image Library
comment: CIL
comment: The Cell: An Image Library-CCDB
comment: The Cell: An Image Library-Cell Centered Database

COMBINE specifications

ZFIN Phenotype

ZFIN Expression

CABRI

CYGD

HUGE

BindingDB

STRING
comment: Search Tool for Retrieval of Interacting Genes/Proteins

STITCH

Anatomical Therapeutic Chemical Vetinary

Phenol-Explorer

SNOMED CT

MeSH 2012
comment: Medical Subject Headings 2012

KnapSack

Canadian Drug Product Database
comment: DPD

MassBank

Golm Metabolome Database
comment: GMD

HomoloGene

UM-BBD Compound
comment: University of Minnesota Biocatalysis/Biodegradation Database (Compound)

ABS
comment: Annotated regulatory Binding Sites database

APD
comment: Antimicrobial Peptide Database

ChemDB

DPV
comment: Description of Plant Viruses
comment: DPVweb

IUPHAR receptor
comment: International Union of Basic and Clinical Pharmacology
comment: IUPHAR-DB

Aceview Worm
comment: AceView WormGenes

ASAP

ATCC
comment: American Type Culture Collection

BDGP EST
comment: Berkeley Drosophila Genome Project EST

Dictybase Gene

IMGT LIGM
comment: IMGT/LIGM-DB

Worfdb
comment: Worm Orf DB

NEXTDB
comment: Nematode Expression Pattern Database

Plant Genome Network

SoyBase

HAMAP
comment: High-quality Automated and Manual Annotation of microbial Proteomes

Rouge
comment: Rodent Unidentified Gene-Encoded Large Proteins

ArrayExpress Platform

CGSC Strain
comment: Coli Genetic Stock Center

COGs
comment: Clusters of Orthologous Groups

DragonDB DNA

DragonDB Protein

DragonDB Locus

DragonDB Allele

ISSN

MEROPS Family

MGED Ontology
comment: MO

NASC code
comment: The Nottingham Arabidopsis Stock Centre

NIAEST

Pazar Transcription Factor
comment: Pazar Database

Plant Ontology
comment: PO

RNA Modification Database
comment: RNAmods

Science Signaling Pathway-Independent Component

Science Signaling Pathway-Dependent Component

Science Signaling Pathway

TreeBASE

Tetrahymena Genome Database
comment: TGD

CMR Gene
comment: Comprehensive Microbial Resource Gene Page

TIGRFAMS

Animal TFDB Family
comment: Animal Transcription Factor Database

IUPHAR family

DBG2 Introns
comment: Database for Bacterial Group II Introns

Spectral Database for Organic Compounds
comment: SDBS

Vbase2

SPIKE Map
comment: Signaling Pathways Integrated Knowledge Engine

METLIN
comment: Metabolite and Tandem Mass Spectrometry Database

GeneCards

MMRRC
comment: Mutant Mouse Regional Resource Centers

UM-BBD Reaction
comment: University of Minnesota Biocatalysis/Biodegradation Database (Reaction)

UM-BBD Enzyme
comment: University of Minnesota Biocatalysis/Biodegradation Database (Enzyme)

UM-BBD Pathway
comment: University of Minnesota Biocatalysis/Biodegradation Database (Pathway)

UM-BBD Biotransformation Rule

mirEX

Dictybase EST

IMGT HLA
comment: IPD IMGT/HLA

Flystock
comment: Bloomington Drosophila Stock Center at Indiana University

OPM
comment: Orientations of Proteins in Membranes

Allergome

PomBase

HPA
comment: Human Protein Atlas

JAX Mice

uBio NameBank
comment: Universal Biological Indexer and Organizer (NameBank)

YeTFasCo
comment: Yeast Transcription Factor Specificity Compendium

TarBase

CharProt

OMA Protein
comment: Orthologous MAtrix

OMA Group

NCBI Protein

GenPept
comment: protein genbank identifier

UniGene

BitterDB Receptor

BitterDB Compound

BioProject

BioSample
comment: BioSDe
comment: BioSdn

PiroplasmaDB

Unite

NCIm
comment: National Cancer Institute Metathesaurus
comment: NCI metathesaurus

ProGlycProt

PolBase

NucleaRDB

SUPFAM
comment: SUPERFAMILY

Rice Genome Annotation Project

PINA
comment: Protein Interaction Network Analysis

Tissue List

BacMap Biography

HGNC Symbol
comment: HUGO Gene Nomenclature Committee Symbol

PANTHER Pathway

BioSharing

FungiDB

DARC
comment: Database of Aligned Ribosomal Complexes

DRSC
comment: FlyRNAi
comment: Drosophila RNAi Screening Cente

OriDB Schizosaccharomyces

OriDB Saccharomyces

PSCDB
comment: Protein Structural Change DataBase

SCOP
comment: Structural Classification of Proteins

ENA
comment: European Nucleotide Archive
comment: Embl-Bank

DOMMINO
comment: Database of Macromolecular Interactions

PANTHER Node

Consensus CDS
comment: CCDS

Locus Reference Genomic
comment: LRG

HPRD
comment: Human Protein Reference Database

GXA Gene
comment: Gene Expression Atlas Gene

GXA Expt
comment: Gene Expression Atlas Experiment

MetaboLights

National Bibliography Number
comment: NBN

ORCID
comment: Open Researcher and Contributor ID

InChI
comment: IUPAC International Chemical Identifier

Wikipedia (En)

PhosphoPoint Kinase

PhosphoPoint Phosphoprotein

InChIKey
comment: hashed InChI

UniProt Isoform
comment: UniProtKB Isoform

KEGG Environ
comment: KEGG

CLDB
comment: Cell Line Data Base

Experimental Factor Ontology
comment: EFO

HGMD
comment: Human Gene Mutation Database

AphidBase Transcript

Affymetrix Probeset

TreeFam

CAPS-DB

Cube db

IDEAL
comment: Intrinsically Disordered proteins with Extensive Annotations and Literature

STAP
comment: Statistical Torsional Angles Potentials of NMR

Pocketome

GOLD genome

GOLD metadata

BugBase Protocol

BugBase Expt

Tree of Life

VariO
comment: Variation Ontology

ViPR Strain
comment: Virus Pathogen Resource Strain

EPD
comment: Eukaryotic Promoter Database

RFAM
comment: RNA Family Database

Fungal Barcode
comment: International Fungal Working Group
comment: FBOL
comment: Fungal Barcode of Life

AFTOL
comment: Assembling the Fungal Tree of Life

AspGD Locus
comment: Aspergillus Genome Database Locus

AspGD Protein

DrugBank Target v3

AutDB
comment: Autism Database

BacMap Map

Bgee family

Bgee gene

Bgee stage

Bgee organ

BioCarta Pathway

PANTHER Pathway Component

Golm Metabolome Database Profile

Golm Metabolome Database GC-MS spectra

Golm Metabolome Database Reference Substance

Golm Metabolome Database Analyte

IntAct Molecule

DEPOD
comment: human DEPhOsphorylation Database

Cell Signaling Technology Pathways

Cell Signaling Technology Antibody

National Drug Code
comment: NDC

Phytozome Locus

SubtiList

DailyMed

SIDER Drug
comment: Side Effect Resource

SIDER Side Effect

WikiGenes

Broad Fungal Genome Initiative
comment: Magnaporthe comparative genomics database

Coriell Cell Repositories

CORUM

COGs Function
comment: Clusters of Orthologous Groups Function

EcoliWiki

Genome Properties

JSTOR
comment: Journal Storage

Mouse Adult Gross Anatomy

UBERON
comment: Uber Anatomy Ontology

Unimod

VBRC
comment: Viral Bioinformatics Resource Center

ViralZone

Gene Ontology Reference
comment: GO reference collection

Rat Genome Database qTL

Rat Genome Database strain

DOOR
comment: Database for prOkaryotic OpeRons

Degradome Database

DBD
comment: Transcription Factor Database

DATF
comment: Database of Arabidopsis transcription factors

IUPHAR ligand

Molbase

YRC PDR
comment: Yeast Resource Center Public Data Repository

Yeast Intron Database v3

FuncBase Fly

FuncBase Human

FuncBase Mouse

FuncBase Yeast

YDPM
comment: Yeast Deletion Project and Proteomics of Mitochondria Database

WormBase RNAi

FunCat
comment: MIPS Functional Catalogue Database

PASS2
comment: Protein Alignments organised as Structural Superfamilies

ICEberg element

ICEberg family

VFDB Genus
comment: Virulence Factor Database genus

VFDB Gene

MeSH 2013

KEGG Module
comment: KEGG

KEGG Disease
comment: KEGG

MedlinePlus

LigandBox

GlycoEpitope

JCGGDB
comment: Japan Consortium for Glycobiology and Glycotechnology DataBase

NONCODE v4 Gene

NONCODE v4 Transcript

Oryzabase Gene

Oryzabase Mutant

Oryzabase Strain

Oryzabase Stage

Oryza Tag Line
comment: OTL

Gene Wiki

PaxDb Organism

PaxDb Protein

Protein Data Bank Ligand

MEROPS Inhibitor

Animal Diversity Web

GLIDA GPCR
comment: GPCR-LIgand DAtabase GPCR

GLIDA Ligand
comment: GPCR-LIgand DAtabase Ligand

GRSDB
comment: G-Rich Sequences DataBase

F-SNP
comment: Functional Single Nucleotide Polymorphism

Homeodomain Research

NORINE

Olfactory Receptor Database
comment: OrDB

Odor Molecules DataBase
comment: OdorDB

P3DB Protein

P3DB Site

TOPDB

Animal Genome Cattle QTL

Animal Genome Chicken QTL

Animal Genome Pig QTL

Animal Genome Sheep QTL

Gramene Growth Stage Ontology

NCBI GI

EBI Metagenomics Sample

European Genome-phenome Archive Study
comment: EGA Study

European Genome-phenome Archive Dataset
comment: EGA Dataset

ProteomeXchange

SBML RDF Vocabulary

PRIDE Project

Antibody Registry

Mathematical Modelling Ontology
comment: MAMO

Plant Environment Ontology
comment: Plant Environment Conditions

Identifiers.org Terms
comment: IdoT

HGNC Family

Yeast Intron Database v4.3

Antibiotic Resistance Genes Database
comment: ARDB

Pathema

ProteomicsDB Protein

ProteomicsDB Peptide

Human Proteome Map Protein
comment: HPM

Human Proteome Map Peptide

DrugBank Target v4

ZINC

FooDB Compound

UNII
comment: Substance Registration System
comment: Unique ingredient identifier

Orphanet Rare Disease Ontology
comment: ORDO

Protein Affinity Reagents
comment: PSI-PAR

ClinVar Record

EBI Metagenomics Project

EU Clinical Trials
comment: EU Clinical Trials Register

Google Patents

USPTO
comment: United States Patent and Trademark Office

Cooperative Patent Classification
comment: CPC

GWAS Central Study

ExAC Variant

GWAS Central Marker

GWAS Central Phenotype

LINCS Cell
comment: HMS-LINCS
comment: Harvard Medical School Library of Integrated Network-based Cellular Signatures

LINCS Protein

LINCS Molecule

ExAC Transcript

ExAC Gene

Wikidata

SwissLipids

UniPathway Compound

SEED Subsystem

SEED Compound

BiGG Model

BiGG Compartment

BiGG Metabolite

BiGG Reaction

RRID
comment: Research Resource IDentifier

UMLS
comment: Unified Medical Language System

MeSH
comment: Medical Subject Headings

Electron Microscopy Data Bank
comment: EMDB

miRTarBase

MedDRA
comment: Medical Dictionary for Regulatory Activities

DASHR
comment: Database of small human noncoding RNAs

DASHR expression

SPLASH

MetaNetX chemical

MetaNetX reaction

MetaNetX compartment

UniPathway Reaction

Human Phenotype Ontology
comment: HPO

SASBDB
comment: Small Angle Scattering Biological Data Bank

HGNC gene family

MDM
comment: Medical Data Models

ProbOnto
comment: Probability Distribution Ontology

APID Interactomes
comment: Agile Protein Interactomes DataServer

STOREDB

Kyoto Encyclopedia of Genes and Genomes
comment: KEGG

Plant Transcription Factor Database
comment: PlantTFDB

Mammalian Phenotype Ontology

World Register of Marine Species
comment: WoRMS

MultiCellDS collection

MultiCellDS Digital snapshot

MultiCellDS Digital Cell Line

E-cyanobacterium entity

E-cyanobacterium model

E-cyanobacterium rule

LINCS Data

AGRICOLA
comment: Agricultural Online Access

Mass Spectrometry Controlled Vocabulary

Environment Ontology
comment: ENVO

ARK
comment: Archival Resource Key

GRID
comment: Global Research Identifier Database

MedGen

ClinVar Submission

ClinVar Variant