MODEL8236441887
type: SBMLModel
parameter: metaid_0000042
parameter: metaid_0000073
species: metaid_0000093
name: Yang2008_AAnetwork_PMN
parameter: metaid_0000064
parameter: metaid_0000074
area units: area
reaction: metaid_0000107
is described by: http://identifiers.org/pubmed/18985027
parameter: metaid_0000039
reaction: metaid_0000108
species: metaid_0000077
parameter: metaid_0000069
parameter: metaid_0000050
parameter: metaid_0000059
parameter: metaid_0000006
parameter: metaid_0000016
parameter: metaid_0000015
parameter: metaid_0000025
parameter: metaid_0000033
species: metaid_0000082
length unit: length
parameter: metaid_0000007
reaction: metaid_0000105
reaction: metaid_0000114
parameter: metaid_0000068
substance units: 008187
species: metaid_0000092
species: metaid_0000086
parameter: metaid_0000024
parameter: metaid_0000034
reaction: metaid_0000106
parameter: metaid_0000045
parameter: metaid_0000053
reaction: metaid_0000100
parameter: metaid_0000044
parameter: metaid_0000054
species: metaid_0000095
parameter: metaid_0000075
volume units: metaid_0000015
parameter: metaid_0000010
reaction: metaid_0000096
parameter: metaid_0000040
reaction: metaid_0000109
parameter: metaid_0000051
parameter: metaid_0000061
species: metaid_0000079
parameter: metaid_0000052
parameter: metaid_0000008
parameter: metaid_0000018
parameter: metaid_0000060
parameter: metaid_0000070
parameter: metaid_0000035
species: metaid_0000084
parameter: metaid_0000009
species: metaid_0000081
species: metaid_0000091
parameter: metaid_0000017
parameter: metaid_0000027
species: metaid_0000088
parameter: metaid_0000026
parameter: metaid_0000036
species: metaid_0000085
parameter: metaid_0000047
parameter: metaid_0000003
parameter: metaid_0000055
parameter: metaid_0000065
parameter: metaid_0000011
parameter: metaid_0000021
reaction: metaid_0000102
parameter: metaid_0000046
units def: 008213
parameter: metaid_0000056
reaction: metaid_0000097
parameter: metaid_0000012
reaction: metaid_0000110
parameter: metaid_0000020
parameter: metaid_0000030
reaction: metaid_0000098

metaid_0000042
type: Parameter
constant: true
value: 2.8
name: kiPGEcoxm

metaid_0000073
type: Parameter
constant: true
value: 1.0
name: ki5LOX

metaid_0000093
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.083
initial amount: NaN
in compartment: metaid_0000076
name: x17

metaid_0000076
type: Compartment
constant: true
size: 1.0
spatial dimensions: 3.0
name: compartment

metaid_0000064
type: Parameter
constant: true
value: 0.15
name: aPGE15loxm

metaid_0000074
type: Parameter
constant: true
value: 0.0
name: iLTAH

metaid_0000107
type: Reaction
reversible: false
kinetic law: 009105
modifier: 009081
modifier: 009044
fast: false
name: R12
modifier: 009032
modifier: 009057
modifier: 009020
product: 008994
modifier: 009007
modifier: 009069
modifier: 009093

metaid_0000081
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x5

metaid_0000094
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.1
initial amount: NaN
in compartment: metaid_0000076
name: x18

metaid_0000089
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x13

metaid_0000095
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.83
initial amount: NaN
in compartment: metaid_0000076
name: x19

metaid_0000087
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x11

008994
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000088

metaid_0000088
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x12

metaid_0000086
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x10

metaid_0000079
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x3

metaid_0000083
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x7

metaid_0000039
type: Parameter
constant: true
value: 0.14
name: kdAA

metaid_0000108
type: Reaction
modifier: 009166
name: R13
fast: false
product: 009117
reversible: false
kinetic law: 009190
modifier: 009129
modifier: 009178
modifier: 009143
modifier: 009154

009117
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000089

metaid_0000090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x14

metaid_0000077
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x1

metaid_0000069
type: Parameter
constant: true
value: 1.0
name: kiCOX2

metaid_0000050
type: Parameter
constant: true
value: 72.0
name: kiPGE5loxm

metaid_0000059
type: Parameter
constant: true
value: 430.0
name: KI15HPETEplam

metaid_0000006
type: Parameter
constant: true
value: 0.0052
name: conPGESm

metaid_0000016
type: Parameter
constant: true
value: 1000.0
name: KcatCOXm

metaid_0000015
type: Parameter
constant: true
value: 160.0
name: KM12LOXm

metaid_0000025
type: Parameter
constant: true
value: 20.0
name: KMLTAHm

metaid_0000033
type: Parameter
constant: true
value: 0.0013
name: kdTXBm

metaid_0000082
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x6

metaid_0000007
type: Parameter
constant: true
value: 0.13
name: conCYPm

metaid_0000105
type: Reaction
modifier: 008910
modifier: 008861
name: R10
modifier: 008898
fast: false
modifier: 008934
modifier: 008885
reversible: false
product: 008849
modifier: 008873
kinetic law: 008946
modifier: 008922

008849
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000086

metaid_0000114
type: Reaction
kinetic law: 009480
modifier: 009468
product: 009456
fast: false
reversible: false
name: R19

009456
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000095

metaid_0000068
type: Parameter
constant: true
value: 0.0
name: iCOX2

008187
type: SBMLUnitsDef
unit: 008200
name: micromole

008200
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

metaid_0000092
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.5
initial amount: NaN
in compartment: metaid_0000076
name: x16

metaid_0000024
type: Parameter
constant: true
value: 150.0
name: KcatLTAHm

metaid_0000034
type: Parameter
constant: true
value: 4.2E-4
name: kd5HETEm

metaid_0000106
type: Reaction
kinetic law: 008982
modifier: 008970
product: 008958
fast: false
reversible: false
name: R11

008958
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000087

metaid_0000045
type: Parameter
constant: true
value: 0.01
name: ki15HPETE5loxm

metaid_0000053
type: Parameter
constant: true
value: 0.29
name: ki12HETEcypm

metaid_0000100
type: Reaction
kinetic law: 008608
modifier: 008596
product: 008584
fast: false
reversible: false
name: R5

metaid_0000080
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x4

008584
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000081

metaid_0000044
type: Parameter
constant: true
value: 0.029
name: kiPGHtxasm

metaid_0000054
type: Parameter
constant: true
value: 0.8
name: ki5HETEcypm

metaid_0000075
type: Parameter
constant: true
value: 1.0
name: kiLTAH

metaid_0000010
type: Parameter
constant: true
value: 3600.0
name: KcatPLAm

metaid_0000096
type: Reaction
modifier: 008378
modifier: 008290
reversible: false
product: 008238
modifier: 008366
modifier: 008316
modifier: 008354
modifier: 008329
modifier: 008251
modifier: 008342
modifier: 008264
fast: false
kinetic law: 008402
modifier: 008390
name: R1
modifier: 008303
modifier: 008277

metaid_0000091
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0063
initial amount: NaN
in compartment: metaid_0000076
name: x15

008238
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000077

metaid_0000078
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x2

metaid_0000040
type: Parameter
constant: true
value: 0.3
name: kiAApgesm

metaid_0000109
type: Reaction
kinetic law: 009250
modifier: 009238
modifier: 009226
modifier: 009214
product: 009202
fast: false
reversible: false
name: R14

009202
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000090

metaid_0000051
type: Parameter
constant: true
value: 6.3
name: ki5HETE5loxm

metaid_0000061
type: Parameter
constant: true
value: 240.0
name: KI5HETEplam

metaid_0000052
type: Parameter
constant: true
value: 129.0
name: kiLTAltahm

metaid_0000008
type: Parameter
constant: true
value: 0.069
name: conPHGPxm

metaid_0000018
type: Parameter
constant: true
value: 3000.0
name: KcatPGESm

metaid_0000060
type: Parameter
constant: true
value: 180.0
name: KILTBplam

metaid_0000070
type: Parameter
constant: true
value: 0.0
name: iPGES

metaid_0000035
type: Parameter
constant: true
value: 0.0017
name: kdLTAm

metaid_0000084
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x8

metaid_0000009
type: Parameter
constant: true
value: 0.0
name: exoAA

metaid_0000017
type: Parameter
constant: true
value: 33.0
name: KMCOXm

metaid_0000027
type: Parameter
constant: true
value: 3.9
name: KMCYPm

metaid_0000026
type: Parameter
constant: true
value: 150.0
name: KcatCYPm

metaid_0000036
type: Parameter
constant: true
value: 6.3E-4
name: kdLTBm

metaid_0000085
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid_0000076
name: x9

metaid_0000047
type: Parameter
constant: true
value: 4.0
name: ki15HETE5loxm

metaid_0000003
type: Parameter
constant: true
value: 4.4
name: linPMN

metaid_0000055
type: Parameter
constant: true
value: 1.5
name: ki15HETE12loxm

metaid_0000065
type: Parameter
constant: true
value: 500.0
name: ksPMN

metaid_0000011
type: Parameter
constant: true
value: 2600.0
name: KMPLAm

metaid_0000021
type: Parameter
constant: true
value: 4.0
name: KMTXASm

metaid_0000102
type: Reaction
kinetic law: 008752
modifier: 008740
modifier: 008728
modifier: 008716
product: 008704
fast: false
reversible: false
name: R7

008704
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000083

metaid_0000046
type: Parameter
constant: true
value: 30.0
name: ki12HETE5loxm

008213
type: SBMLUnitsDef
unit: 008225
name: minute

008225
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 60.0
kind: SECOND

metaid_0000056
type: Parameter
constant: true
value: 0.23
name: ki15HPETE12loxm

metaid_0000097
type: Reaction
kinetic law: 008464
modifier: 008451
modifier: 008439
modifier: 008426
product: 008414
fast: false
reversible: false
name: R2

008414
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000078

metaid_0000012
type: Parameter
constant: true
value: 5000.0
name: Kcat15LOXm

metaid_0000110
type: Reaction
kinetic law: 009286
modifier: 009274
product: 009262
fast: false
reversible: false
name: R15

009262
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000091

metaid_0000020
type: Parameter
constant: true
value: 1599.0
name: KcatTXASm

metaid_0000030
type: Parameter
constant: true
value: 0.36
name: kd15HPETEm

metaid_0000098
type: Reaction
kinetic law: 008500
modifier: 008488
product: 008476
fast: false
reversible: false
name: R3

008476
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000079

metaid_0000041
type: Parameter
constant: true
value: 0.53
name: ki15HETEpgesm

metaid_0000101
type: Reaction
reversible: false
modifier: 008632
fast: false
product: 008620
modifier: 008644
kinetic law: 008692
modifier: 008656
modifier: 008668
name: R6
modifier: 008680

008620
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000082

metaid_0000111
type: Reaction
kinetic law: 009322
modifier: 009310
product: 009298
fast: false
reversible: false
name: R16

009298
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000092

metaid_0000063
type: Parameter
constant: true
value: 2.3E-5
name: KIPGE15loxm

metaid_0000071
type: Parameter
constant: true
value: 1.0
name: kiPGES

metaid_0000062
type: Parameter
constant: true
value: 0.022
name: KILTB5loxm

metaid_0000072
type: Parameter
constant: true
value: 0.0
name: i5LOX

metaid_0000028
type: Parameter
constant: true
value: 2000.0
name: KcatPHGPxm

metaid_0000038
type: Parameter
constant: true
value: 0.017
name: kdexoAA

metaid_0000037
type: Parameter
constant: true
value: 8.3E-4
name: kd15LOXm

metaid_0000019
type: Parameter
constant: true
value: 160.0
name: KMPGESm

metaid_0000029
type: Parameter
constant: true
value: 58.0
name: KMPHGPxm

W3 CDTF: Thu Mar 03 23:41:29 GMT 2011

metaid_0000057
type: Parameter
constant: true
value: 1.6
name: ki12HPETE12loxm

metaid_0000067
type: Parameter
constant: true
value: 1.0
name: kiPLA

metaid_0000013
type: Parameter
constant: true
value: 13.0
name: KM15LOXm

metaid_0000023
type: Parameter
constant: true
value: 1.4
name: KM5LOXm

metaid_0000049
type: Parameter
constant: true
value: 0.26
name: ki5HPETE5loxm

metaid_0000031
type: Parameter
constant: true
value: 0.1
name: kd15HETEm

metaid_0000099
type: Reaction
reversible: false
modifier: 008548
name: R4
modifier: 008536
kinetic law: 008572
fast: false
modifier: 008524
modifier: 008560
product: 008512

008512
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000080

metaid_0000048
type: Parameter
constant: true
value: 0.175
name: kiLTA5loxm

metaid_0000058
type: Parameter
constant: true
value: 260.0
name: KI12HPETEplam

metaid_0000005
type: Parameter
constant: true
value: 0.63
name: conCOXm

metaid_0000004
type: Parameter
constant: true
value: 4.8
name: conPLAm

metaid_0000014
type: Parameter
constant: true
value: 9500.0
name: Kcat12LOXm

metaid_0000066
type: Parameter
constant: true
value: 0.0
name: iPLA

metaid_0000112
type: Reaction
kinetic law: 009371
modifier: 009359
modifier: 009346
product: 009334
fast: false
reversible: false
name: R17

009334
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000093

metaid_0000022
type: Parameter
constant: true
value: 6000.0
name: Kcat5LOXm

metaid_0000032
type: Parameter
constant: true
value: 1.0E-4
name: kdTXAm

metaid_0000104
type: Reaction
kinetic law: 008837
modifier: 008824
product: 008812
fast: false
reversible: false
name: R9

008812
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000085

metaid_0000043
type: Parameter
constant: true
value: 0.52
name: ki15HETEtxasm

metaid_0000103
type: Reaction
kinetic law: 008800
modifier: 008788
modifier: 008776
product: 008764
fast: false
reversible: false
name: R8

008764
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000084

metaid_0000113
type: Reaction
name: R18
product: 009383
reversible: false
modifier: 009420
kinetic law: 009444
modifier: 009432
modifier: 009395
fast: false
modifier: 009408

009383
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000094

ORG:
  orgname: EMBL-EBI
n:
  given: Lukas
  family: Endler

W3 CDTF: Thu Mar 03 23:41:29 GMT 2011

W3 CDTF: Thu Apr 22 02:06:11 BST 2010

ORG:
  orgname: EMBL-EBI
n:
  given: Lukas
  family: Endler

W3 CDTF: Thu Mar 03 23:41:29 GMT 2011

ORG:
  orgname: EMBL-EBI
n:
  given: Lukas
  family: Endler