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reaction: 516548
reaction: 506969
reaction: 528087
reaction: 516088
species: 461013
species: 476211
species: 496909
reaction: 520787
species: 488570
species: 497169
reaction: 499309
species: 491430
species: 483731
species: 484331
reaction: 525607
species: 485111
reaction: 540165
reaction: 524887
species: 478111
reaction: 498969
reaction: 533406
species: 472932
species: 493970
reaction: 513688
reaction: 523787
reaction: 512648
species: 467832
reaction: 509148
reaction: 504589
reaction: 528886
reaction: 499109
reaction: 512948
reaction: 539966
reaction: 525847
reaction: 527207
species: 460373
reaction: 532426
reaction: 527487
species: 465972
reaction: 513868
reaction: 515228
species: 486030
reaction: 505649
species: 461153
species: 478351
species: 492870
species: 482751
species: 483311
reaction: 528427
reaction: 516448
species: 496090
species: 475391
species: 465352
reaction: 506869
reaction: 504049
species: 476411
reaction: 530087
species: 471412
reaction: 518907
reaction: 508368
species: 471592
reaction: 530926
species: 467092
species: 477471
species: 486710
species: 487310
species: 461973
species: 470152
species: 489570
reaction: 539985
species: 470532
reaction: 513408
species: 486790
reaction: 526627
species: 491990
reaction: 514648
reaction: 507428
reaction: 498509
reaction: 540126

516548
type: Reaction
kinetic law: 129864
product: 129852
reactant: 129840
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_tartrate_exchange

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129912
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units: 017602
value: 0.0

017638
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scale: 0
multipler: 2.7777E-4
kind: SECOND

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scale: 0
multipler: 1.0
kind: GRAM

017614
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exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

129900
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129888
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value: 999999.0

129876
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units: 017602
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129852
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species: 496909

496909
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_tartrate_C4H4O6

460293
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size: NaN
spatial dimensions: 3.0

129840
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species: 488850

488850
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_tartrate_C4H4O6

506969
type: Reaction
name: R_crotonobetaine_transport_via_ABC_system__periplasm_
product: 077396
product: 077433
reactant: 077359
reactant: 077372
reactant: 077384
notes: GENE_ASSOCIATION: ( b2677 and b2678 and b2679 ) PROTEIN_ASSOCIATION: ( ProVec and ProW and ProX ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reversible: false
product: 077420
product: 077408
fast: false
kinetic law: 077445

077396
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stoichiometry: 1.0
species: 467132

467132
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_ADP_C10H12N5O10P2

460333
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0

077433
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species: 485830

485830
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphate_HO4P

077359
type: SpeciesReference
stoichiometry: 1.0
species: 469232

469232
type: Species
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_ATP_C10H12N5O13P3

077372
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species: 478591

478591
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_H2O_H2O

077384
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species: 471272

471272
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_crotonobetaine_C7H13NO2

460313
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0

077420
type: SpeciesReference
stoichiometry: 1.0
species: 478711

478711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_H_H

077408
type: SpeciesReference
stoichiometry: 1.0
species: 471252

471252
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_crotonobetaine_C7H13NO2

077505
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value: -0.006985

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units: 017602
value: 0.0

077481
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value: 0.0

077469
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units: 017602
value: 999999.0

077457
type: LocalParameter
units: 017602
value: 0.0

528087
type: Reaction
kinetic law: 207489
product: 207477
reactant: 207465
notes: GENE_ASSOCIATION: b4036 PROTEIN_ASSOCIATION: LamB SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_maltoseMaltotriose_transport_via_diffusion__extracellular_to_periplasm__irreversible

207550
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value: 0.0

207538
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units: 017602
value: 0.0

207526
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207514
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units: 017602
value: 0.0

207501
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units: 017602
value: 0.0

207477
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stoichiometry: 1.0
species: 481391

481391
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Maltose_C12H22O11

207465
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stoichiometry: 1.0
species: 481371

481371
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Maltose_C12H22O11

516088
type: Reaction
kinetic law: 127641
product: 127629
reactant: 127617
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Propanal_exchange

127702
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value: 0.0

127690
type: LocalParameter
units: 017602
value: 0.0

127678
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value: 0.0

127666
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units: 017602
value: 999999.0

127653
type: LocalParameter
units: 017602
value: 0.0

127629
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stoichiometry: 1.0
species: 496549

496549
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Propanal_C3H6O

127617
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stoichiometry: 1.0
species: 486070

486070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Propanal_C3H6O

461013
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_Acyl_sn_glycero_3_phosphoethanolamine__n_C180__C23H48NO7P1

476211
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Galactonate_C6H11O7

520787
type: Reaction
kinetic law: 160278
notes: GENE_ASSOCIATION: b1297 PROTEIN_ASSOCIATION: YcjK SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
name: R_gamma_glutamyl_putrescine_synthase
product: 160242
fast: false
reactant: 160206
product: 160230
reactant: 160194
reactant: 160218
product: 160254
product: 160266
reversible: false

160338
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160326
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units: 017602
value: 0.0

160314
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160302
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value: 999999.0

160290
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units: 017602
value: 0.0

160242
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stoichiometry: 1.0
species: 476831

476831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_gamma_glutamyl_putrescine_C9H20O3N3

160206
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stoichiometry: 1.0
species: 477311

477311
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Glutamate_C5H8NO4

160230
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species: 467132

160194
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stoichiometry: 1.0
species: 469232

160218
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species: 486870

486870
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Putrescine_C4H14N2

160254
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stoichiometry: 1.0
species: 478711

160266
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stoichiometry: 1.0
species: 485830

488570
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Sucrose_C12H22O11

497169
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_tetradecenoate__n_C141__C14H25O2

499309
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product: 027551
reactant: 027515
reversible: true
kinetic law: 027575
reactant: 027539
product: 027563
notes: GENE_ASSOCIATION: b1093 PROTEIN_ASSOCIATION: FabG SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 1.1.1.100
name: R_3_oxoacyl_acyl_carrier_protein_reductase__n_C100_
fast: false
reactant: 027527

027551
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species: 463932

463932
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

027515
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species: 464392

464392
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

027635
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027623
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units: 017602
value: 0.284212

027611
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value: 0.0

027599
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value: 999999.0

027587
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027539
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stoichiometry: 1.0
species: 483391

483391
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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027563
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species: 483371

483371
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

027527
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stoichiometry: 1.0
species: 478711

491430
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_UDP_D_glucuronate_C15H19N2O18P2

483731
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Nitrate_NO3

484331
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_octanoate__n_C80__C8H15O2

525607
type: Reaction
notes: GENE_ASSOCIATION: b0074 PROTEIN_ASSOCIATION: LeuA SUBSYSTEM: S_Valine__Leucine__and_Isoleucine_Metabolism PROTEIN_CLASS: 4.1.3.12
reactant: 189881
product: 189917
reversible: false
product: 189929
reactant: 189893
fast: false
reactant: 189869
name: R_2_isopropylmalate_synthase
kinetic law: 189942
product: 189905

189881
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stoichiometry: 1.0
species: 466132

466132
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetyl_CoA_C23H34N7O17P3S

189917
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species: 470692

470692
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Coenzyme_A_C21H32N7O16P3S

189929
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stoichiometry: 1.0
species: 478711

189893
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stoichiometry: 1.0
species: 478591

189869
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stoichiometry: 1.0
species: 464212

464212
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Methyl_2_oxobutanoate_C5H7O3

190002
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value: 0.0

189990
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units: 017602
value: 0.359817

189978
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value: 0.0

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value: 999999.0

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units: 017602
value: 0.0

189905
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stoichiometry: 1.0
species: 463592

463592
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Carboxy_3_hydroxy_4_methylpentanoate_C7H10O5

485111
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_phosphatidylethanolamine__dihexadec_9enoyl__n_C161__C37H70N1O8P1

540165
type: Reaction
kinetic law: 297206
product: 297194
reactant: 297182
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:
fast: false
reversible: false
name: R_undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_

297266
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value: 0.0

297254
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units: 017602
value: 0.0

297242
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value: 0.0

297230
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value: 999999.0

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297194
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stoichiometry: 1.0
species: 491110

491110
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Undecaprenyl_phosphate_C55H89O4P

297182
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species: 491130

491130
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Undecaprenyl_phosphate_C55H89O4P

524887
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kinetic law: 185624
product: 185612
reactant: 185600
notes: GENE_ASSOCIATION: ( b0929 or b1377 or b2215 or b0241 ) PROTEIN_ASSOCIATION: ( OmpF ) or ( OmpN ) or ( OmpC ) or ( PhoE ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_proton_transport_via_diffusion__extracellular_to_periplasm_

185685
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value: 0.0

185673
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units: 017602
value: -14.032428

185661
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units: 017602
value: 999999.0

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value: -999999.0

185612
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species: 478751

478751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_H_H

185600
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species: 478731

478731
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_H_H

478111
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_glutaredoxin__reduced__XH2

498969
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kinetic law: 025522
product: 025510
product: 025498
reactant: 025486
notes: GENE_ASSOCIATION: ( b0180 or b0954 ) PROTEIN_ASSOCIATION: ( FabZ ) or ( FabA ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 4.2.1.61
fast: false
reversible: false
name: R_3_hydroxyacyl_acyl_carrier_protein_dehydratase__n_C121_

025582
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units: 017602
value: 0.120141

025558
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025546
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value: 999999.0

025534
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units: 017602
value: 0.0

025510
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stoichiometry: 1.0
species: 488710

488710
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

025498
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species: 478591

025486
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stoichiometry: 1.0
species: 463793

463793
type: Species
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 460333

533406
type: Reaction
name: R_phosphatidylethanolamine_transport_via_ABC_system__n_C141__periplasm_
fast: false
product: 245389
kinetic law: 245426
product: 245401
reactant: 245341
product: 245413
reversible: false
reactant: 245353
product: 245377
notes: GENE_ASSOCIATION: b0914 PROTEIN_ASSOCIATION: MsbA SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 245365

245389
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species: 478711

245486
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value: 0.0

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value: 0.0

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245450
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245438
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245401
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stoichiometry: 1.0
species: 485830

245341
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species: 469232

245413
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species: 485071

485071
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_phosphatidylethanolamine__ditetradec_7_enoyl__n_C141__C33H62N1O8P1

245353
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species: 478591

245377
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species: 467132

245365
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stoichiometry: 1.0
species: 485070

485070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_phosphatidylethanolamine__ditetradec_7_enoyl__n_C141__C33H62N1O8P1

472932
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_dIMP_C10H11N4O7P

493970
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_coprogen_unloaded__no_Fe_III___C35H52N6O13

513688
type: Reaction
kinetic law: 116009
product: 115997
reactant: 115985
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Fructuronate_exchange

116069
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units: 017602
value: 0.0

116045
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value: 0.0

116033
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units: 017602
value: 999999.0

116021
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units: 017602
value: 0.0

115997
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species: 494950

494950
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Fructuronate_C6H9O7

115985
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species: 475291

475291
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Fructuronate_C6H9O7

523787
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product: 178810
name: R_HCO3_equilibration_reaction
reactant: 178785
reactant: 178798
reversible: true
kinetic law: 178834
fast: false
product: 178822
notes: GENE_ASSOCIATION: ( b0339 or b0126 ) PROTEIN_ASSOCIATION: ( CynT ) or ( YadF ) SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 4.2.1.1

178810
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species: 478711

178785
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stoichiometry: 1.0
species: 470632

470632
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_CO2_CO2

178798
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species: 478591

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178884
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value: 2.28413

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178847
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units: 017602
value: -999999.0

178822
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stoichiometry: 1.0
species: 478811

478811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Bicarbonate_CHO3

512648
type: Reaction
kinetic law: 110975
product: 110963
reactant: 110951
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Co2_exchange

111036
type: LocalParameter
value: 0.0

111023
type: LocalParameter
units: 017602
value: -0.002522

111011
type: LocalParameter
value: 0.0

110999
type: LocalParameter
units: 017602
value: 999999.0

110987
type: LocalParameter
units: 017602
value: -999999.0

110963
type: SpeciesReference
stoichiometry: 1.0
species: 493910

493910
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Co2_Co

110951
type: SpeciesReference
stoichiometry: 1.0
species: 470732

470732
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Co2_Co

467832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Allose_C6H12O6

509148
type: Reaction
product: 091382
reactant: 091370
reversible: false
name: R_deoxyinosine_transport_in_via_proton_symport__periplasm_
product: 091394
kinetic law: 091406
reactant: 091358
fast: false
notes: GENE_ASSOCIATION: b2964 PROTEIN_ASSOCIATION: NupG SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:

091382
type: SpeciesReference
stoichiometry: 1.0
species: 472952

472952
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Deoxyinosine_C10H12N4O4

091370
type: SpeciesReference
stoichiometry: 1.0
species: 478751

091394
type: SpeciesReference
stoichiometry: 1.0
species: 478711

091467
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value: 0.0

091455
type: LocalParameter
units: 017602
value: 0.0

091443
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value: 0.0

091431
type: LocalParameter
units: 017602
value: 999999.0

091419
type: LocalParameter
units: 017602
value: 0.0

091358
type: SpeciesReference
stoichiometry: 1.0
species: 472992

472992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Deoxyinosine_C10H12N4O4

504589
type: Reaction
product: 060396
reactant: 060384
reactant: 060372
kinetic law: 060420
notes: GENE_ASSOCIATION: b1453 PROTEIN_ASSOCIATION: AnsP SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
product: 060408
name: R_L_asparagine_reversible_transport_via_proton_symport__periplasm_
fast: false
reversible: true

060396
type: SpeciesReference
stoichiometry: 1.0
species: 468952

468952
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Asparagine_C4H8N2O3

060384
type: SpeciesReference
stoichiometry: 1.0
species: 478751

060372
type: SpeciesReference
stoichiometry: 1.0
species: 468992

468992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Asparagine_C4H8N2O3

060480
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value: 0.0

060468
type: LocalParameter
units: 017602
value: 0.0

060456
type: LocalParameter
value: 0.0

060444
type: LocalParameter
units: 017602
value: 999999.0

060432
type: LocalParameter
units: 017602
value: -999999.0

060408
type: SpeciesReference
stoichiometry: 1.0
species: 478711

528886
type: Reaction
name: R_murein_L_D_carboxypeptidase__murein5px4p___periplasm_
product: 215370
reactant: 215346
reversible: false
kinetic law: 215394
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Murein_Biosynthesis PROTEIN_CLASS: 3.4.17.13
fast: false
reactant: 215358
product: 215382

215370
type: SpeciesReference
stoichiometry: 1.0
species: 467712

467712
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Alanyl_D_alanine_C6H12N2O3

215346
type: SpeciesReference
stoichiometry: 1.0
species: 478631

478631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_H2O_H2O

215454
type: LocalParameter
value: -0.08918

215442
type: LocalParameter
units: 017602
value: 0.0

215430
type: LocalParameter
value: 0.0

215418
type: LocalParameter
units: 017602
value: 999999.0

215406
type: LocalParameter
units: 017602
value: 0.0

215358
type: SpeciesReference
stoichiometry: 1.0
species: 483071

483071
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

215382
type: SpeciesReference
stoichiometry: 1.0
species: 482851

482851
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

499109
type: Reaction
kinetic law: 026284
product: 026272
product: 026260
reactant: 026248
notes: GENE_ASSOCIATION: ( b0954 or b0180 ) PROTEIN_ASSOCIATION: ( FabA ) or ( FabZ ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 4.2.1.58
fast: false
reversible: false
name: R_3_hydroxyacyl_acyl_carrier_protein_dehydratase__n_C40_

026346
type: LocalParameter
value: 0.0

026333
type: LocalParameter
units: 017602
value: 0.284212

026321
type: LocalParameter
value: 0.0

026308
type: LocalParameter
units: 017602
value: 999999.0

026296
type: LocalParameter
units: 017602
value: 0.0

026272
type: SpeciesReference
stoichiometry: 1.0
species: 478591

026260
type: SpeciesReference
stoichiometry: 1.0
species: 469412

469412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

026248
type: SpeciesReference
stoichiometry: 1.0
species: 463752

463752
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

512948
type: Reaction
kinetic law: 112434
product: 112421
reactant: 112408
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Decanoate__n_C100__exchange

112496
type: LocalParameter
value: -0.08755

112484
type: LocalParameter
units: 017602
value: 0.0

112472
type: LocalParameter
value: 0.0

112460
type: LocalParameter
units: 017602
value: 999999.0

112447
type: LocalParameter
units: 017602
value: 0.0

112421
type: SpeciesReference
stoichiometry: 1.0
species: 494210

494210
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Decanoate__n_C100__C10H19O2

112408
type: SpeciesReference
stoichiometry: 1.0
species: 472072

472072
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Decanoate__n_C100__C10H19O2

539966
type: Reaction
notes: GENE_ASSOCIATION: ( b1907 or b0112 or b0576 ) PROTEIN_ASSOCIATION: ( TyrP ) or ( AroP ) or ( PheP ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reversible: true
product: 294744
fast: false
kinetic law: 294768
product: 294756
name: R_L_tyrosine_reversible_transport_via_proton_symport__periplasm_
reactant: 294732
reactant: 294720

294744
type: SpeciesReference
stoichiometry: 1.0
species: 478711

294829
type: LocalParameter
value: 0.0

294817
type: LocalParameter
units: 017602
value: 0.0

294805
type: LocalParameter
value: 0.0

294793
type: LocalParameter
units: 017602
value: 999999.0

294781
type: LocalParameter
units: 017602
value: -999999.0

294756
type: SpeciesReference
stoichiometry: 1.0
species: 490610

490610
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Tyrosine_C9H11NO3

294732
type: SpeciesReference
stoichiometry: 1.0
species: 490650

490650
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Tyrosine_C9H11NO3

294720
type: SpeciesReference
stoichiometry: 1.0
species: 478751

525847
type: Reaction
reactant: 191440
reactant: 191428
reversible: false
product: 191453
product: 191465
fast: false
notes: GENE_ASSOCIATION: ( b2342 or b3845 ) PROTEIN_ASSOCIATION: ( FadI ) or ( FadA ) SUBSYSTEM: S_Membrane_Lipid_Metabolism PROTEIN_CLASS: 2.3.1.16
kinetic law: 191477
name: R_3_ketoacyl_CoA_thiolase

191440
type: SpeciesReference
stoichiometry: 1.0
species: 470692

191428
type: SpeciesReference
stoichiometry: 1.0
species: 464332

464332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Oxodecanoyl_CoA_C31H48N7O18P3S

191453
type: SpeciesReference
stoichiometry: 1.0
species: 466132

191465
type: SpeciesReference
stoichiometry: 1.0
species: 484131

484131
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

191537
type: LocalParameter
value: 0.440544

191525
type: LocalParameter
units: 017602
value: 0.0

191513
type: LocalParameter
value: 0.0

191501
type: LocalParameter
units: 017602
value: 0.0

191489
type: LocalParameter
units: 017602
value: 0.0

527207
type: Reaction
reactant: 200188
product: 200224
reactant: 200200
reversible: false
fast: false
kinetic law: 200236
notes: GENE_ASSOCIATION: b3825 PROTEIN_ASSOCIATION: PldB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS:
name: R_Lysophospholipase_L2__acyltransferase__2_acyl_glycerophosphoethanolamine__n_C140_
product: 200212

200188
type: SpeciesReference
stoichiometry: 1.0
species: 462053

462053
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Acyl_sn_glycero_3_phosphoethanolamine__n_C140__C19H40NO7P1

200224
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stoichiometry: 1.0
species: 475591

475591
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_sn_Glycero_3_phosphoethanolamine_C5H14NO6P

200200
type: SpeciesReference
stoichiometry: 1.0
species: 485250

485250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerol__ditetradecanoyl__n_C140__C34H66O10P1

200297
type: LocalParameter
value: -0.485716

200285
type: LocalParameter
units: 017602
value: 0.0

200273
type: LocalParameter
value: 0.0

200261
type: LocalParameter
units: 017602
value: 999999.0

200249
type: LocalParameter
units: 017602
value: 0.0

200212
type: SpeciesReference
stoichiometry: 1.0
species: 468392

468392
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_acyl_phosphatidylglycerol__n_C140__C48H92O11P

460373
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_Diacyl_sn_glycerol__didodecanoyl__n_C120__C27H52O5

532426
type: Reaction
reactant: 238825
product: 238849
reversible: false
kinetic law: 238861
fast: false
name: R_Octaprenyl_hydroxybenzoate_decarboxylase
reactant: 238813
product: 238837
notes: GENE_ASSOCIATION: ( b3843 or b2311 ) PROTEIN_ASSOCIATION: ( UbiD ) or ( UbiX ) SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:

238825
type: SpeciesReference
stoichiometry: 1.0
species: 478711

238849
type: SpeciesReference
stoichiometry: 1.0
species: 470632

238922
type: LocalParameter
value: 0.0

238909
type: LocalParameter
units: 017602
value: 1.78E-4

238897
type: LocalParameter
value: 0.0

238885
type: LocalParameter
units: 017602
value: 999999.0

238873
type: LocalParameter
units: 017602
value: 0.0

238813
type: SpeciesReference
stoichiometry: 1.0
species: 464592

464592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Octaprenyl_4_hydroxybenzoate_C47H69O3

238837
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stoichiometry: 1.0
species: 463373

463373
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Octaprenylphenol_C46H70O

527487
type: Reaction
reactant: 201900
fast: false
kinetic law: 201960
product: 201924
reactant: 201912
name: R_Lysophospholipase_L2__2_acylglycerophosphoethanolamine__n_C140_
product: 201948
reversible: false
product: 201936
notes: GENE_ASSOCIATION: b3825 PROTEIN_ASSOCIATION: PldB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5

201900
type: SpeciesReference
stoichiometry: 1.0
species: 462053

202021
type: LocalParameter
value: -0.060074

202009
type: LocalParameter
units: 017602
value: 0.0

201997
type: LocalParameter
value: 0.0

201985
type: LocalParameter
units: 017602
value: 999999.0

201973
type: LocalParameter
units: 017602
value: 0.0

201924
type: SpeciesReference
stoichiometry: 1.0
species: 475591

201912
type: SpeciesReference
stoichiometry: 1.0
species: 478591

201948
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stoichiometry: 1.0
species: 490390

490390
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tetradecanoate__n_C140__C14H27O2

201936
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stoichiometry: 1.0
species: 478711

465972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Acetate_C2H3O2

513868
type: Reaction
kinetic law: 116883
product: 116871
reactant: 116859
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Glucose_6_phosphate_exchange

116943
type: LocalParameter
value: 0.0

116931
type: LocalParameter
units: 017602
value: 0.0

116919
type: LocalParameter
value: 0.0

116907
type: LocalParameter
units: 017602
value: 999999.0

116895
type: LocalParameter
units: 017602
value: 0.0

116871
type: SpeciesReference
stoichiometry: 1.0
species: 495130

495130
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Glucose_6_phosphate_C6H11O9P

116859
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stoichiometry: 1.0
species: 475851

475851
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Glucose_6_phosphate_C6H11O9P

515228
type: Reaction
kinetic law: 123477
product: 123465
reactant: 123453
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Maltohexaose_exchange

123538
type: LocalParameter
value: 0.0

123526
type: LocalParameter
units: 017602
value: 0.0

123514
type: LocalParameter
value: 0.0

123502
type: LocalParameter
units: 017602
value: 999999.0

123489
type: LocalParameter
units: 017602
value: 0.0

123465
type: SpeciesReference
stoichiometry: 1.0
species: 496069

496069
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Maltohexaose_C36H62O31

123453
type: SpeciesReference
stoichiometry: 1.0
species: 481451

481451
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Maltohexaose_C36H62O31

486030
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Propionate__n_C30__C3H5O2

505649
type: Reaction
product: 067274
product: 067262
reactant: 067250
kinetic law: 067286
notes: GENE_ASSOCIATION: ( b0752 or b3915 ) PROTEIN_ASSOCIATION: ( ZitB ) or ( FieF ) SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
fast: false
reactant: 067238
name: R_cadmium__Cd2__transport_out_via_proton_antiport__periplasm_
reversible: false

067274
type: SpeciesReference
stoichiometry: 1.0
species: 469852

469852
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Cadmium_Cd

067262
type: SpeciesReference
stoichiometry: 1.0
species: 478711

067250
type: SpeciesReference
stoichiometry: 1.0
species: 478751

067346
type: LocalParameter
value: -0.002328

067334
type: LocalParameter
units: 017602
value: 0.0

067322
type: LocalParameter
value: 0.0

067310
type: LocalParameter
units: 017602
value: 999999.0

067298
type: LocalParameter
units: 017602
value: 0.0

067238
type: SpeciesReference
stoichiometry: 1.0
species: 469812

469812
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Cadmium_Cd

461153
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_Acyl_sn_glycero_3_phosphoglycerol__n_C180__C24H48O9P1

478351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_GTP_C10H12N5O14P3

492870
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_4_Hydroxyphenylacetaldehyde_C8H8O2

482751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_methanesulfonate_CH3O3S

483311
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Nicotinate_C6H4NO2

528427
type: Reaction
kinetic law: 211442
product: 211430
product: 211417
reactant: 211405
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS:
fast: false
reversible: false
name: R_5_Methylthio_5_deoxy_D_ribulose_1_phosphate_dehydratase

211502
type: LocalParameter
value: 0.0

211490
type: LocalParameter
units: 017602
value: 0.0

211478
type: LocalParameter
value: 0.0

211466
type: LocalParameter
units: 017602
value: 999999.0

211454
type: LocalParameter
units: 017602
value: 0.0

211430
type: SpeciesReference
stoichiometry: 1.0
species: 478591

211417
type: SpeciesReference
stoichiometry: 1.0
species: 473032

473032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_3_diketo_5_methylthio_1_phosphopentane_C6H9O6PS

211405
type: SpeciesReference
stoichiometry: 1.0
species: 465432

465432
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5_Methylthio_5_deoxy_D_ribulose_1_phosphate_C6H11O7PS

516448
type: Reaction
kinetic law: 129379
product: 129367
reactant: 129355
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Sulfate_exchange

129439
type: LocalParameter
value: 0.0

129427
type: LocalParameter
units: 017602
value: -0.199876

129415
type: LocalParameter
value: 0.0

129403
type: LocalParameter
units: 017602
value: 999999.0

129391
type: LocalParameter
units: 017602
value: -999999.0

129367
type: SpeciesReference
stoichiometry: 1.0
species: 496850

496850
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Sulfate_O4S

129355
type: SpeciesReference
stoichiometry: 1.0
species: 488210

488210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Sulfate_O4S

496090
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Maltotetraose_C24H42O21

475391
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Fumarate_C4H2O4

465352
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_5_Dehydro_D_gluconate_C6H9O7

506869
type: Reaction
reversible: false
reactant: 076382
fast: false
name: R_Carnitinebutyrobetaine_antiporter__periplasm_
reactant: 076394
kinetic law: 076431
notes: GENE_ASSOCIATION: b0040 PROTEIN_ASSOCIATION: CaiT SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
product: 076407
product: 076419

076382
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stoichiometry: 1.0
species: 476511

476511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_gamma_butyrobetaine_C7H15NO2

076394
type: SpeciesReference
stoichiometry: 1.0
species: 471152

471152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Carnitine_C7H15NO3

076491
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value: 0.002328

076479
type: LocalParameter
units: 017602
value: 0.0

076467
type: LocalParameter
value: 0.0

076455
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units: 017602
value: 0.0

076443
type: LocalParameter
units: 017602
value: 0.0

076407
type: SpeciesReference
stoichiometry: 1.0
species: 471112

471112
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Carnitine_C7H15NO3

076419
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stoichiometry: 1.0
species: 476551

476551
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_gamma_butyrobetaine_C7H15NO2

504049
type: Reaction
reactant: 056892
product: 056916
name: R_aerobactin_secretion__to_extracellular_
fast: false
kinetic law: 056928
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
product: 056904
reversible: false
reactant: 056880

056892
type: SpeciesReference
stoichiometry: 1.0
species: 478751

056916
type: SpeciesReference
stoichiometry: 1.0
species: 468692

468692
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_aerobactin_minus_Fe3_C22H33N4O13

056988
type: LocalParameter
value: 0.0

056976
type: LocalParameter
units: 017602
value: 0.0

056964
type: LocalParameter
value: 0.0

056952
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units: 017602
value: 999999.0

056940
type: LocalParameter
units: 017602
value: 0.0

056904
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stoichiometry: 1.0
species: 478711

056880
type: SpeciesReference
stoichiometry: 1.0
species: 468772

468772
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_aerobactin_minus_Fe3_C22H33N4O13

476411
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Glucosamine_6_phosphate_C6H13NO8P

530087
type: Reaction
fast: false
reactant: 223415
reactant: 223403
reversible: false
product: 223451
name: R_NAD_synthase__nh3_
notes: GENE_ASSOCIATION: b1740 PROTEIN_ASSOCIATION: NadEec SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 6.3.1.5
product: 223439
product: 223475
kinetic law: 223487
product: 223463
reactant: 223427

223415
type: SpeciesReference
stoichiometry: 1.0
species: 473232

473232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Deamino_NAD_C21H24N6O15P2

223403
type: SpeciesReference
stoichiometry: 1.0
species: 469232

223451
type: SpeciesReference
stoichiometry: 1.0
species: 478711

223439
type: SpeciesReference
stoichiometry: 1.0
species: 468052

468052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_AMP_C10H12N5O7P

223475
type: SpeciesReference
stoichiometry: 1.0
species: 486210

486210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Diphosphate_HO7P2

223547
type: LocalParameter
value: 0.0

223535
type: LocalParameter
units: 017602
value: 0.001819

223523
type: LocalParameter
value: 0.0

223511
type: LocalParameter
units: 017602
value: 999999.0

223499
type: LocalParameter
units: 017602
value: 0.0

223463
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stoichiometry: 1.0
species: 483331

483331
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

223427
type: SpeciesReference
stoichiometry: 1.0
species: 483431

483431
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Ammonium_H4N

471412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cu_Cu

518907
type: Reaction
reversible: false
name: R_fructose_1_phosphate_kinase
product: 148871
fast: false
notes: GENE_ASSOCIATION: b2168 PROTEIN_ASSOCIATION: FruK SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 2.7.1.56
reactant: 148847
kinetic law: 148907
product: 148883
reactant: 148859
product: 148895

148871
type: SpeciesReference
stoichiometry: 1.0
species: 467132

148847
type: SpeciesReference
stoichiometry: 1.0
species: 469232

148967
type: LocalParameter
value: 0.0

148955
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units: 017602
value: 0.0

148943
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value: 0.0

148931
type: LocalParameter
units: 017602
value: 999999.0

148919
type: LocalParameter
units: 017602
value: 0.0

148883
type: SpeciesReference
stoichiometry: 1.0
species: 474351

474351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Fructose_1_6_bisphosphate_C6H10O12P2

148859
type: SpeciesReference
stoichiometry: 1.0
species: 474231

474231
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Fructose_1_phosphate_C6H11O9P

148895
type: SpeciesReference
stoichiometry: 1.0
species: 478711

508368
type: Reaction
kinetic law: 086667
product: 086643
product: 086655
reversible: false
notes: GENE_ASSOCIATION: ( b2964 or b2393 ) PROTEIN_ASSOCIATION: ( NupG ) or ( NupCec ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 086631
fast: false
reactant: 086619
name: R_deoxycytidine_transport_in_via_proton_symport__periplasm_

086727
type: LocalParameter
value: -0.002328

086715
type: LocalParameter
units: 017602
value: 0.0

086703
type: LocalParameter
value: 0.0

086691
type: LocalParameter
units: 017602
value: 999999.0

086679
type: LocalParameter
units: 017602
value: 0.0

086643
type: SpeciesReference
stoichiometry: 1.0
species: 472252

472252
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Deoxycytidine_C9H13N3O4

086655
type: SpeciesReference
stoichiometry: 1.0
species: 478711

086631
type: SpeciesReference
stoichiometry: 1.0
species: 478751

086619
type: SpeciesReference
stoichiometry: 1.0
species: 472292

472292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Deoxycytidine_C9H13N3O4

471592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Cysteine_C3H7NO2S

530926
type: Reaction
product: 229501
product: 229488
reversible: false
kinetic law: 229513
fast: false
notes: GENE_ASSOCIATION: b2744 PROTEIN_ASSOCIATION: SurE SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.1.3.5
reactant: 229464
reactant: 229476
name: R_5__nucleotidase__IMP_

229501
type: SpeciesReference
stoichiometry: 1.0
species: 485830

229488
type: SpeciesReference
stoichiometry: 1.0
species: 480111

480111
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Inosine_C10H12N4O5

229573
type: LocalParameter
value: -0.009314

229561
type: LocalParameter
units: 017602
value: 0.0

229549
type: LocalParameter
value: 0.0

229537
type: LocalParameter
units: 017602
value: 999999.0

229525
type: LocalParameter
units: 017602
value: 0.0

229464
type: SpeciesReference
stoichiometry: 1.0
species: 478591

229476
type: SpeciesReference
stoichiometry: 1.0
species: 479931

479931
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_IMP_C10H11N4O8P

467092
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Adenosylcobalamin_C72H100CoN18O17P

477471
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Glycine_C2H5NO2

486710
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

487310
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_S_Ribosyl_L_homocysteine_C9H17NO6S

461973
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_meso_2_6_Diaminoheptanedioate_C7H14N2O4

470152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Cys_Gly_C5H10N2O3S

489570
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_trimethylamine_C3H10N

539985
type: Reaction
kinetic law: 294865
product: 294853
reactant: 294841
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_tyrosine_transport_via_diffusion__extracellular_to_periplasm_

294926
type: LocalParameter
value: 0.0

294914
type: LocalParameter
units: 017602
value: 0.0

294902
type: LocalParameter
value: 0.0

294890
type: LocalParameter
units: 017602
value: 999999.0

294877
type: LocalParameter
units: 017602
value: -999999.0

294853
type: SpeciesReference
stoichiometry: 1.0
species: 490650

294841
type: SpeciesReference
stoichiometry: 1.0
species: 490630

490630
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Tyrosine_C9H11NO3

470532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_cardiolipin__tetraoctadecanoyl__n_C180__C81H156O17P2

513408
type: Reaction
kinetic law: 114657
product: 114645
reactant: 114633
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Fe2_exchange

114717
type: LocalParameter
value: 0.0

114705
type: LocalParameter
units: 017602
value: -0.006032

114693
type: LocalParameter
value: 0.0

114681
type: LocalParameter
units: 017602
value: 999999.0

114669
type: LocalParameter
units: 017602
value: -999999.0

114645
type: SpeciesReference
stoichiometry: 1.0
species: 494670

494670
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Fe2_Fe

114633
type: SpeciesReference
stoichiometry: 1.0
species: 474371

474371
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Fe2_Fe

486790
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_psicoselysine_C12H25N2O7

526627
type: Reaction
reactant: 196339
reversible: false
kinetic law: 196399
fast: false
name: R_Lysophospholipase_L1__2_acylglycerophosphotidate__n_C120___periplasm_
reactant: 196351
notes: GENE_ASSOCIATION: b0494 PROTEIN_ASSOCIATION: TesA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5
product: 196375
product: 196363
product: 196387

196339
type: SpeciesReference
stoichiometry: 1.0
species: 461213

461213
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_dodecanoyl_sn_glycerol_3_phosphate_C15H29O7P1

196459
type: LocalParameter
value: -0.040632

196447
type: LocalParameter
units: 017602
value: 0.0

196435
type: LocalParameter
value: 0.0

196423
type: LocalParameter
units: 017602
value: 999999.0

196411
type: LocalParameter
units: 017602
value: 0.0

196351
type: SpeciesReference
stoichiometry: 1.0
species: 478631

196375
type: SpeciesReference
stoichiometry: 1.0
species: 477691

477691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Glycerol_3_phosphate_C3H7O6P

196363
type: SpeciesReference
stoichiometry: 1.0
species: 472392

472392
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Dodecanoate__n_C120__C12H23O2

196387
type: SpeciesReference
stoichiometry: 1.0
species: 478751

491990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Valyl_tRNA_Val__C5H10NOR

514648
type: Reaction
kinetic law: 120664
product: 120652
reactant: 120640
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_hepta_acylated_core_oligosaccharide_lipid_A__E_coli__exchange

120725
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value: 0.0

120713
type: LocalParameter
units: 017602
value: 0.0

120701
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value: 0.0

120688
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units: 017602
value: 999999.0

120676
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units: 017602
value: 0.0

120652
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stoichiometry: 1.0
species: 495769

495769
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293

120640
type: SpeciesReference
stoichiometry: 1.0
species: 478771

478771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293

507428
type: Reaction
kinetic law: 080788
product: 080775
reactant: 080762
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_cysteine_transport_via_diffusion__extracellular_to_periplasm_

080853
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value: 0.0

080840
type: LocalParameter
units: 017602
value: 0.0

080827
type: LocalParameter
value: 0.0

080814
type: LocalParameter
units: 017602
value: 999999.0

080801
type: LocalParameter
units: 017602
value: -999999.0

080775
type: SpeciesReference
stoichiometry: 1.0
species: 471672

471672
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Cysteine_C3H7NO2S

080762
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stoichiometry: 1.0
species: 471652

471652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Cysteine_C3H7NO2S

498509
type: Reaction
kinetic law: 022746
product: 022734
reactant: 022722
notes: GENE_ASSOCIATION: b2835 PROTEIN_ASSOCIATION: LplT SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_2_Acyl_sn_glycero_3_phosphoglycerol__n_C141__transporter_via_facilitated_diffusion__periplasm_

022807
type: LocalParameter
value: 0.0

022795
type: LocalParameter
units: 017602
value: 0.0

022783
type: LocalParameter
value: 0.0

022771
type: LocalParameter
units: 017602
value: 999999.0

022758
type: LocalParameter
units: 017602
value: 0.0

022734
type: SpeciesReference
stoichiometry: 1.0
species: 462373

462373
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Acyl_sn_glycero_3_phosphoglycerol__n_C141__C20H38O9P1

022722
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stoichiometry: 1.0
species: 462393

462393
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_2_Acyl_sn_glycero_3_phosphoglycerol__n_C141__C20H38O9P1

540126
type: Reaction
reactant: 296799
product: 296811
name: R_undecaprenyl_diphosphatase
reversible: false
notes: GENE_ASSOCIATION: ( b1278 or b0841 or b3057 ) PROTEIN_ASSOCIATION: ( PgpB ) or ( YbjG ) or ( UppP ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 3.6.1.27
reactant: 296787
fast: false
product: 296823
product: 296835
kinetic law: 296847

296799
type: SpeciesReference
stoichiometry: 1.0
species: 491070

491070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Undecaprenyl_diphosphate_C55H89O7P2

296811
type: SpeciesReference
stoichiometry: 1.0
species: 478711

296787
type: SpeciesReference
stoichiometry: 1.0
species: 478591

296823
type: SpeciesReference
stoichiometry: 1.0
species: 485830

296835
type: SpeciesReference
stoichiometry: 1.0
species: 491110

296907
type: LocalParameter
value: 0.0

296895
type: LocalParameter
units: 017602
value: 0.022188

296883
type: LocalParameter
value: 0.0

296871
type: LocalParameter
units: 017602
value: 999999.0

296859
type: LocalParameter
units: 017602
value: 0.0

527847
type: Reaction
kinetic law: 204551
product: 204539
reactant: 204527
notes: GENE_ASSOCIATION: b3903 PROTEIN_ASSOCIATION: RhaA SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
fast: false
reversible: false
name: R_Lyxose_isomerase

204611
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value: 0.0

204599
type: LocalParameter
units: 017602
value: 0.0

204587
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value: 0.0

204575
type: LocalParameter
units: 017602
value: 0.0

204563
type: LocalParameter
units: 017602
value: 0.0

204539
type: SpeciesReference
stoichiometry: 1.0
species: 492350

492350
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Xylulose_C5H10O5

204527
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stoichiometry: 1.0
species: 481111

481111
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Lyxose_C5H10O5

489270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Thiamine_diphosphate_C12H16N4O7P2S

490550
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_tungstate_O4W1

512348
type: Reaction
kinetic law: 109523
product: 109511
reactant: 109499
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_Asparagine_exchange

109585
type: LocalParameter
value: -0.03353

109573
type: LocalParameter
units: 017602
value: 0.0

109560
type: LocalParameter
value: 0.0

109548
type: LocalParameter
units: 017602
value: 999999.0

109536
type: LocalParameter
units: 017602
value: 0.0

109511
type: SpeciesReference
stoichiometry: 1.0
species: 493610

493610
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Asparagine_C4H8N2O3

109499
type: SpeciesReference
stoichiometry: 1.0
species: 468972

468972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Asparagine_C4H8N2O3

515868
type: Reaction
kinetic law: 126580
product: 126568
reactant: 126556
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_octadecenoate__n_C181__exchange

126641
type: LocalParameter
value: -0.087434

126629
type: LocalParameter
units: 017602
value: 0.0

126617
type: LocalParameter
value: 0.0

126605
type: LocalParameter
units: 017602
value: 999999.0

126592
type: LocalParameter
units: 017602
value: 0.0

126568
type: SpeciesReference
stoichiometry: 1.0
species: 496389

496389
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_octadecenoate__n_C181__C18H33O2

126556
type: SpeciesReference
stoichiometry: 1.0
species: 484251

484251
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_octadecenoate__n_C181__C18H33O2

499729
type: Reaction
product: 030463
reactant: 030427
name: R_3_oxoacyl_acyl_carrier_protein_synthase__n_C60_
product: 030451
fast: false
reactant: 030415
notes: GENE_ASSOCIATION: ( b2323 or b1095 ) PROTEIN_ASSOCIATION: ( FabB ) or ( FabF ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 2.3.1.41
reactant: 030439
kinetic law: 030487
product: 030475
reversible: false

030463
type: SpeciesReference
stoichiometry: 1.0
species: 465632

465632
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_acyl_carrier_protein_C11H21N2O7PRS

030427
type: SpeciesReference
stoichiometry: 1.0
species: 478711

030451
type: SpeciesReference
stoichiometry: 1.0
species: 464452

464452
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

030415
type: SpeciesReference
stoichiometry: 1.0
species: 469432

469432
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Butyryl_ACP__n_C40ACP__C15H27N2O8PRS

030439
type: SpeciesReference
stoichiometry: 1.0
species: 481171

481171
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

030547
type: LocalParameter
value: 0.0

030535
type: LocalParameter
units: 017602
value: 0.284212

030523
type: LocalParameter
value: 0.0

030511
type: LocalParameter
units: 017602
value: 999999.0

030499
type: LocalParameter
units: 017602
value: 0.0

030475
type: SpeciesReference
stoichiometry: 1.0
species: 470632

518147
type: Reaction
reactant: 143542
fast: false
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
product: 143602
product: 143578
reversible: false
product: 143590
name: R_iron__III__transport_via_ABC_system__periplasm_to_cytoplasm_
product: 143566
kinetic law: 143614
reactant: 143529
reactant: 143554

143542
type: SpeciesReference
stoichiometry: 1.0
species: 478591

143602
type: SpeciesReference
stoichiometry: 1.0
species: 485830

143578
type: SpeciesReference
stoichiometry: 1.0
species: 474392

474392
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Fe3_Fe

143590
type: SpeciesReference
stoichiometry: 1.0
species: 478711

143566
type: SpeciesReference
stoichiometry: 1.0
species: 467132

143675
type: LocalParameter
value: 0.0

143663
type: LocalParameter
units: 017602
value: 0.005676

143651
type: LocalParameter
value: 0.0

143639
type: LocalParameter
units: 017602
value: 999999.0

143626
type: LocalParameter
units: 017602
value: 0.0

143529
type: SpeciesReference
stoichiometry: 1.0
species: 469232

143554
type: SpeciesReference
stoichiometry: 1.0
species: 474412

474412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Fe3_Fe

470052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

480071
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_myo_Inositol_C6H12O6

505349
type: Reaction
kinetic law: 065267
product: 065255
reactant: 065243
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_Butyrate_transport_via_diffusion__extracellular_to_periplasm_

065327
type: LocalParameter
value: 0.0

065315
type: LocalParameter
units: 017602
value: 0.0

065303
type: LocalParameter
value: 0.0

065291
type: LocalParameter
units: 017602
value: 999999.0

065279
type: LocalParameter
units: 017602
value: -999999.0

065255
type: SpeciesReference
stoichiometry: 1.0
species: 469492

469492
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Butyrate__n_C40__C4H7O2

065243
type: SpeciesReference
stoichiometry: 1.0
species: 469472

469472
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Butyrate__n_C40__C4H7O2

523907
type: Reaction
product: 179492
kinetic law: 179517
notes: GENE_ASSOCIATION: b0428 PROTEIN_ASSOCIATION: CyoE SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
reactant: 179467
product: 179505
name: R_Heme_O_synthase
reactant: 179479
reactant: 179455
reversible: false
fast: false

179492
type: SpeciesReference
stoichiometry: 1.0
species: 479031

479031
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Heme_O_C49H56FeN4O5

179579
type: LocalParameter
value: -0.529141

179567
type: LocalParameter
units: 017602
value: 0.0

179554
type: LocalParameter
value: 0.0

179541
type: LocalParameter
units: 017602
value: 999999.0

179529
type: LocalParameter
units: 017602
value: 0.0

179467
type: SpeciesReference
stoichiometry: 1.0
species: 478591

179505
type: SpeciesReference
stoichiometry: 1.0
species: 486210

179479
type: SpeciesReference
stoichiometry: 1.0
species: 485691

485691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Protoheme_C34H30FeN4O4

179455
type: SpeciesReference
stoichiometry: 1.0
species: 475111

475111
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Farnesyl_diphosphate_C15H25O7P2

498749
type: Reaction
reactant: 024230
kinetic law: 024278
product: 024254
reactant: 024218
notes: GENE_ASSOCIATION: b3553 PROTEIN_ASSOCIATION: YiaE SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
reactant: 024242
fast: false
name: R_2_dehydro_D_gluconate_reductase__NADH_
reversible: false
product: 024266

024230
type: SpeciesReference
stoichiometry: 1.0
species: 478711

024338
type: LocalParameter
value: 0.0

024326
type: LocalParameter
units: 017602
value: 0.0

024314
type: LocalParameter
value: 0.0

024302
type: LocalParameter
units: 017602
value: 999999.0

024290
type: LocalParameter
units: 017602
value: 0.0

024254
type: SpeciesReference
stoichiometry: 1.0
species: 476931

476931
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Gluconate_C6H11O7

024218
type: SpeciesReference
stoichiometry: 1.0
species: 462833

462833
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Dehydro_D_gluconate_C6H9O7

024242
type: SpeciesReference
stoichiometry: 1.0
species: 483351

483351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

024266
type: SpeciesReference
stoichiometry: 1.0
species: 483331

503169
type: Reaction
kinetic law: 051440
product: 051428
reactant: 051416
notes: GENE_ASSOCIATION: b4090 PROTEIN_ASSOCIATION: RpiB SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
fast: false
reversible: true
name: R_Allose_6_phosphate_isomerase

051500
type: LocalParameter
value: 0.0

051488
type: LocalParameter
units: 017602
value: 0.0

051476
type: LocalParameter
value: 0.0

051464
type: LocalParameter
units: 017602
value: 999999.0

051452
type: LocalParameter
units: 017602
value: -999999.0

051428
type: SpeciesReference
stoichiometry: 1.0
species: 467932

467932
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Allulose_6_phosphate_C6H11O9P

051416
type: SpeciesReference
stoichiometry: 1.0
species: 467772

467772
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Allose_6_phosphate_C6H11O9P

528626
type: Reaction
kinetic law: 213452
product: 213440
reactant: 213428
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_methionine_S_oxide_diffusion__extracellular_

213512
type: LocalParameter
value: 0.0

213500
type: LocalParameter
units: 017602
value: 0.0

213488
type: LocalParameter
value: 0.0

213476
type: LocalParameter
units: 017602
value: 999999.0

213464
type: LocalParameter
units: 017602
value: -999999.0

213440
type: SpeciesReference
stoichiometry: 1.0
species: 482211

482211
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Methionine_Sulfoxide_C5H11NO3S

213428
type: SpeciesReference
stoichiometry: 1.0
species: 482191

482191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Methionine_Sulfoxide_C5H11NO3S

502849
type: Reaction
fast: false
reversible: false
notes: GENE_ASSOCIATION: ( b2551 or b0870 ) PROTEIN_ASSOCIATION: ( GlyA ) or ( LtaE ) SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
reactant: 049296
reactant: 049284
name: R_D_alanine_transaminase
kinetic law: 049332
product: 049320
product: 049308

049296
type: SpeciesReference
stoichiometry: 1.0
species: 486950

486950
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyridoxal_5__phosphate_C8H8NO6P

049284
type: SpeciesReference
stoichiometry: 1.0
species: 467552

467552
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Alanine_C3H7NO2

049392
type: LocalParameter
value: -0.015833

049380
type: LocalParameter
units: 017602
value: 0.0

049368
type: LocalParameter
value: 0.0

049356
type: LocalParameter
units: 017602
value: 999999.0

049344
type: LocalParameter
units: 017602
value: 0.0

049320
type: SpeciesReference
stoichiometry: 1.0
species: 487010

487010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyruvate_C3H3O3

049308
type: SpeciesReference
stoichiometry: 1.0
species: 486910

486910
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyridoxamine_5__phosphate_C8H12N2O5P

523587
type: Reaction
product: 177567
fast: false
name: R_3_hydroxyacyl_CoA_dehydrogenase__3_oxohexanoyl_CoA_
reversible: false
product: 177543
kinetic law: 177579
product: 177555
reactant: 177531
reactant: 177519
notes: GENE_ASSOCIATION: ( b3846 or b2341 ) PROTEIN_ASSOCIATION: ( FadB ) or ( FadJ ) SUBSYSTEM: S_Membrane_Lipid_Metabolism PROTEIN_CLASS: 1.1.1.35

177567
type: SpeciesReference
stoichiometry: 1.0
species: 483351

177543
type: SpeciesReference
stoichiometry: 1.0
species: 464412

464412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Oxohexanoyl_CoA_C27H40N7O18P3S

177639
type: LocalParameter
value: 1.16E-4

177627
type: LocalParameter
units: 017602
value: 0.0

177615
type: LocalParameter
value: 0.0

177603
type: LocalParameter
units: 017602
value: 0.0

177591
type: LocalParameter
units: 017602
value: 0.0

177555
type: SpeciesReference
stoichiometry: 1.0
species: 478711

177531
type: SpeciesReference
stoichiometry: 1.0
species: 483331

177519
type: SpeciesReference
stoichiometry: 1.0
species: 463952

463952
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

524747
type: Reaction
reactant: 184773
product: 184797
product: 184785
reactant: 184761
kinetic law: 184810
fast: false
name: R_hypoxanthine_phosphoribosyltransferase__Hypoxanthine_
notes: GENE_ASSOCIATION: ( b0238 or b0125 ) PROTEIN_ASSOCIATION: ( Gpt ) or ( Hpt ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 2.4.2.8
reversible: false

184773
type: SpeciesReference
stoichiometry: 1.0
species: 486630

486630
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5_Phospho_alpha_D_ribose_1_diphosphate_C5H8O14P3

184797
type: SpeciesReference
stoichiometry: 1.0
species: 486210

184785
type: SpeciesReference
stoichiometry: 1.0
species: 479931

184761
type: SpeciesReference
stoichiometry: 1.0
species: 479591

479591
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Hypoxanthine_C5H4N4O

184871
type: LocalParameter
value: 0.0

184858
type: LocalParameter
units: 017602
value: 0.0

184846
type: LocalParameter
value: 0.0

184834
type: LocalParameter
units: 017602
value: 999999.0

184822
type: LocalParameter
units: 017602
value: 0.0

504369
type: Reaction
kinetic law: 058929
product: 058917
reactant: 058905
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_arginine_transport_via_diffusion__extracellular_to_periplasm_

058989
type: LocalParameter
value: 0.0

058977
type: LocalParameter
units: 017602
value: 0.0

058965
type: LocalParameter
value: 0.0

058953
type: LocalParameter
units: 017602
value: 999999.0

058941
type: LocalParameter
units: 017602
value: -999999.0

058917
type: SpeciesReference
stoichiometry: 1.0
species: 468832

468832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Arginine_C6H15N4O2

058905
type: SpeciesReference
stoichiometry: 1.0
species: 468812

468812
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Arginine_C6H15N4O2

530706
type: Reaction
product: 227881
reactant: 227845
fast: false
notes: GENE_ASSOCIATION: ( ( b1465 and b1466 and b1467 and b1468 ) or ( b1224 and b1225 and b1226 and b1227 ) ) PROTEIN_ASSOCIATION: ( NarZYWV ) or ( NarGHIJ ) SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS: 1.7.99.4
kinetic law: 227929
reactant: 227857
product: 227905
name: R_Nitrate_reductase__Ubiquinol_8___periplasm_
product: 227917
product: 227893
reversible: false
reactant: 227869

227881
type: SpeciesReference
stoichiometry: 1.0
species: 478591

227845
type: SpeciesReference
stoichiometry: 2.0
species: 478711

227990
type: LocalParameter
value: -0.004657

227977
type: LocalParameter
units: 017602
value: 0.0

227965
type: LocalParameter
value: 0.0

227953
type: LocalParameter
units: 017602
value: 999999.0

227941
type: LocalParameter
units: 017602
value: 0.0

227857
type: SpeciesReference
stoichiometry: 1.0
species: 483691

483691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Nitrate_NO3

227905
type: SpeciesReference
stoichiometry: 1.0
species: 487070

487070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Ubiquinone_8_C49H74O4

227917
type: SpeciesReference
stoichiometry: 2.0
species: 478751

227893
type: SpeciesReference
stoichiometry: 1.0
species: 483631

483631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Nitrite_NO2

227869
type: SpeciesReference
stoichiometry: 1.0
species: 487090

487090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Ubiquinol_8_C49H76O4

473332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_periplasmic_protein_disulfide_isomerase_I__reduced__XH2

517208
type: Reaction
kinetic law: 134150
product: 134138
product: 134126
reactant: 134114
notes: GENE_ASSOCIATION: ( b0825 or b3946 ) PROTEIN_ASSOCIATION: ( Fsa ) or ( TalC ) SUBSYSTEM: S_GlycolysisGluconeogenesis PROTEIN_CLASS:
fast: false
reversible: true
name: R_fructose_6_phosphate_aldolase

134211
type: LocalParameter
value: 0.0

134198
type: LocalParameter
units: 017602
value: 0.0

134186
type: LocalParameter
value: 0.0

134174
type: LocalParameter
units: 017602
value: 999999.0

134162
type: LocalParameter
units: 017602
value: -999999.0

134138
type: SpeciesReference
stoichiometry: 1.0
species: 475511

475511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Glyceraldehyde_3_phosphate_C3H5O6P

134126
type: SpeciesReference
stoichiometry: 1.0
species: 472592

472592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Dihydroxyacetone_C3H6O3

134114
type: SpeciesReference
stoichiometry: 1.0
species: 474232

474232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Fructose_6_phosphate_C6H11O9P

523867
type: Reaction
kinetic law: 179283
product: 179271
reactant: 179259
notes: GENE_ASSOCIATION: b2344 PROTEIN_ASSOCIATION: FadL SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_Hexadecenoate_transport_via_facilitated_irreversible_diffusion__extracellular_to_periplasm_

179345
type: LocalParameter
value: 0.0

179332
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units: 017602
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initial concentration: NaN
initial amount: NaN
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initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Hexadecenoate__n_C161__C16H29O2

530266
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kinetic law: 225089
reactant: 225041
name: R_nucleoside_diphosphate_kinase__ATPdCDP_
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reversible: true
notes: GENE_ASSOCIATION: ( b2518 or b0474 ) PROTEIN_ASSOCIATION: ( Ndk ) or ( Adk ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 2.7.4.6
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product: 225077
reactant: 225053

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225137
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value: 0.021581

225125
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225101
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225041
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species: 469232

225065
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species: 467132

225077
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stoichiometry: 1.0
species: 472232

472232
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_dCTP_C9H12N3O13P3

225053
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472152
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_dCDP_C9H12N3O10P2

516908
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kinetic law: 131613
product: 131601
reactant: 131589
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Phosphotyrosine_exchange

131675
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131663
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value: 0.0

131650
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131638
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131626
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131601
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497249
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initial concentration: NaN
initial amount: NaN
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name: M_Phosphotyrosine_C9H10NO6P

131589
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initial concentration: NaN
initial amount: NaN
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name: M_Phosphotyrosine_C9H10NO6P

476031
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_D_Galactose_C6H12O6

501869
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kinetic law: 043357
product: 043345
reactant: 043333
notes: GENE_ASSOCIATION: b0411 PROTEIN_ASSOCIATION: Tsx SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
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reversible: true
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043417
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043405
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043393
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043381
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043369
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species: 467012

467012
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Adenosine_C10H13N5O4

043333
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species: 466992

466992
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Adenosine_C10H13N5O4

504669
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product: 060865
reactant: 060853
product: 060877
kinetic law: 060889
name: R_aspartate_1_decarboxylase
fast: false
reactant: 060841
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060865
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species: 467492

467492
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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species: 470632

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469112
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_L_Aspartate_C4H6NO4

484891
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phenylacetic_acid_C8H7O2

481271
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Malate_C4H4O5

482691
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Menaquinol_8_C51H74O2

485230
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerol__didodecanoyl__n_C120__C30H58O10P1

485190
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Phenethylamine_C8H12N

473312
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_periplasmic_protein_disulfide_isomerase_I__oxidized__X

509428
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kinetic law: 093259
product: 093247
reactant: 093235
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_Dimethyl_sulfoxide_transport_via_diffusion__extracellular_to_periplasm_

093319
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093307
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093295
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093283
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093271
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units: 017602
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093247
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stoichiometry: 1.0
species: 473212

473212
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Dimethyl_sulfoxide_C2H6OS

093235
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species: 473192

473192
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Dimethyl_sulfoxide_C2H6OS

464732
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_3__UMP_C9H11N2O9P

537726
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kinetic law: 273068
product: 273055
product: 273043
reactant: 273031
notes: GENE_ASSOCIATION: b0415 PROTEIN_ASSOCIATION: RibE SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 2.5.1.9
fast: false
reversible: false
name: R_riboflavin_synthase

273128
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273116
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units: 017602
value: 3.56E-4

273104
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273092
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273080
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273055
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stoichiometry: 1.0
species: 487390

487390
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Riboflavin_C17H20N4O6

273043
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species: 465192

465192
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_4__1_D_Ribitylamino__5_aminouracil_C9H16N4O6

273031
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species: 473072

473072
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_6_7_Dimethyl_8__1_D_ribityl_lumazine_C13H18N4O6

510808
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kinetic law: 101675
product: 101663
product: 101651
reactant: 101639
notes: GENE_ASSOCIATION: ( b3846 or b2341 ) PROTEIN_ASSOCIATION: ( FadB ) or ( FadJ ) SUBSYSTEM: S_Membrane_Lipid_Metabolism PROTEIN_CLASS: 4.2.1.17
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reversible: true
name: R_3_hydroxyacyl_CoA_dehydratase__3_hydroxydecanoyl_CoA_

101735
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101723
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101711
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101699
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101687
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101663
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species: 478591

101651
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stoichiometry: 1.0
species: 472012

472012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_trans_Dec_2_enoyl_CoA_C31H48N7O17P3S

101639
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stoichiometry: 1.0
species: 463892

463892
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constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
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505889
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kinetic law: 068807
product: 068783
fast: false
product: 068795
notes: GENE_ASSOCIATION: b1661 PROTEIN_ASSOCIATION: Cfa SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.1.1.79
reversible: false
product: 068771
reactant: 068747
reactant: 068759
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068869
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068857
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068845
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068833
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068820
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068783
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species: 470872

470872
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_cyclopropane_phosphatidylglycerol__dihexadec_9_10_cyclo_anoyl__n_C160_cyclo__C40H74O10P1

068795
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species: 478711

068771
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species: 467352

467352
type: Species
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_S_Adenosyl_L_homocysteine_C14H20N6O5S

068747
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species: 467992

467992
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_S_Adenosyl_L_methionine_C15H23N6O5S

068759
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species: 485331

485331
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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480811
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initial concentration: NaN
initial amount: NaN
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name: M__R__S_Lactoylglutathione_C13H20N3O8S

481251
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initial concentration: NaN
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name: M_L_Malate_C4H4O5

476091
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name: M_D_Galactarate_C6H8O8

501809
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product: 043005
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reversible: false
reactant: 042969
notes: GENE_ASSOCIATION: b0030 PROTEIN_ASSOCIATION: RihC SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.2.2.8
fast: false
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reactant: 042981

043005
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species: 487330

487330
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_D_Ribose_C5H10O5

042993
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species: 466912

466912
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constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
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042969
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species: 466972

466972
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_Adenosine_C10H13N5O4

043078
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043066
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043054
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043042
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043029
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042981
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species: 478591

490850
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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473392
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_fused_thioldisulfide_interchange_protein__oxidized__X

514208
type: Reaction
kinetic law: 118533
product: 118520
reactant: 118508
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Glucuronate_exchange

118593
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118581
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118569
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118557
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118545
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118520
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stoichiometry: 1.0
species: 495470

495470
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boundary condition: true
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initial concentration: NaN
initial amount: NaN
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name: M_D_Glucuronate_C6H9O7

118508
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species: 477111

477111
type: Species
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_D_Glucuronate_C6H9O7

538946
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kinetic law: 282281
product: 282269
product: 282257
reactant: 282245
notes: GENE_ASSOCIATION: b2261 PROTEIN_ASSOCIATION: MenC SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
fast: false
reversible: false
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282342
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282329
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value: 0.0

282317
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282305
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value: 999999.0

282293
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282269
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stoichiometry: 1.0
species: 488390

488390
type: Species
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_o_Succinylbenzoate_C11H8O5

282257
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species: 478591

282245
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species: 463413

463413
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_2_Succinyl_6_hydroxy_2_4_cyclohexadiene_1_carboxylate_C11H10O6

488770
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_D_Tagatose_6_phosphate_C6H11O9P

472792
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_Dihydroneopterin_monophosphate_C9H12N5O7P

527407
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reactant: 201406
product: 201442
kinetic law: 201454
notes: GENE_ASSOCIATION: b3825 PROTEIN_ASSOCIATION: PldB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS:
product: 201430
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reactant: 201418
reversible: false
name: R_Lysophospholipase_L2__acyltransferase__2_acyl_glycerophosphoglycerol__n_C161_

201406
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species: 462453

462453
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_2_Acyl_sn_glycero_3_phosphoglycerol__n_C161__C22H42O9P1

201442
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species: 475651

475651
type: Species
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Glycerophosphoglycerol_C6H14O8P

201514
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201502
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201490
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201478
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201466
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201430
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species: 468452

468452
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_acyl_phosphatidylglycerol__n_C161__C54H98O11P

201418
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species: 485331

487430
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_L_Rhamnulose_C6H12O5

525207
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notes: GENE_ASSOCIATION: b0401 PROTEIN_ASSOCIATION: BrnQ SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
kinetic law: 187599
product: 187587
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product: 187574
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187648
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187636
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187624
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187611
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187587
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species: 479831

479831
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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187549
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187574
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187562
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species: 479871

479871
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486430
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481831
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initial concentration: NaN
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name: M_D_Mannonate_C6H11O7

513228
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kinetic law: 113790
product: 113777
reactant: 113765
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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113850
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113838
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113826
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113814
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113802
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113777
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species: 494490

494490
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initial concentration: NaN
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113765
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species: 473832

473832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Deoxyuridine_C9H12N2O5

537966
type: Reaction
kinetic law: 274481
product: 274469
product: 274457
reactant: 274445
notes: GENE_ASSOCIATION: b3902 PROTEIN_ASSOCIATION: RhaD SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 4.1.2.19
fast: false
reversible: true
name: R_Rhamnulose_1_phosphate_aldolase

274542
type: LocalParameter
value: 0.036673

274530
type: LocalParameter
units: 017602
value: 0.0

274518
type: LocalParameter
value: 0.0

274506
type: LocalParameter
units: 017602
value: 0.0

274494
type: LocalParameter
units: 017602
value: 0.0

274469
type: SpeciesReference
stoichiometry: 1.0
species: 480651

480651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Lactaldehyde_C3H6O2

274457
type: SpeciesReference
stoichiometry: 1.0
species: 472652

472652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Dihydroxyacetone_phosphate_C3H5O6P

274445
type: SpeciesReference
stoichiometry: 1.0
species: 487410

487410
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Rhamnulose_1_phosphate_C6H11O8P

482611
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Mannitol_C6H14O6

495070
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycerophosphoglycerol_C6H14O8P

526427
type: Reaction
product: 195119
reactant: 195070
reversible: false
name: R_L_leucine_transport_via_ABC_system__periplasm_
product: 195082
notes: GENE_ASSOCIATION: ( ( b3454 and b3455 and b3457 and b3460 and b3456 ) or ( b3454 and b3455 and b3457 and b3458 and b3456 ) ) PROTEIN_ASSOCIATION: ( LivF and LivG and LivH and LivJ and LivM ) or ( LivF and LivG and LivH and LivK and LivM ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 195045
fast: false
reactant: 195057
product: 195106
kinetic law: 195131
product: 195094

195119
type: SpeciesReference
stoichiometry: 1.0
species: 485830

195070
type: SpeciesReference
stoichiometry: 1.0
species: 480771

480771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Leucine_C6H13NO2

195082
type: SpeciesReference
stoichiometry: 1.0
species: 467132

195045
type: SpeciesReference
stoichiometry: 1.0
species: 469232

195057
type: SpeciesReference
stoichiometry: 1.0
species: 478591

195106
type: SpeciesReference
stoichiometry: 1.0
species: 480731

480731
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Leucine_C6H13NO2

195192
type: LocalParameter
value: -0.006985

195179
type: LocalParameter
units: 017602
value: 0.0

195167
type: LocalParameter
value: 0.0

195155
type: LocalParameter
units: 017602
value: 999999.0

195143
type: LocalParameter
units: 017602
value: 0.0

195094
type: SpeciesReference
stoichiometry: 1.0
species: 478711

500549
type: Reaction
kinetic law: 035575
product: 035563
reactant: 035551
notes: GENE_ASSOCIATION: s0001 PROTEIN_ASSOCIATION: SPONTANEOUS SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
fast: false
reversible: true
name: R_acetaldehyde_reversible_transport__periplasm_

035635
type: LocalParameter
value: 0.0

035623
type: LocalParameter
units: 017602
value: 0.0

035611
type: LocalParameter
value: 0.0

035599
type: LocalParameter
units: 017602
value: 999999.0

035587
type: LocalParameter
units: 017602
value: -999999.0

035563
type: SpeciesReference
stoichiometry: 1.0
species: 466052

466052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetaldehyde_C2H4O

035551
type: SpeciesReference
stoichiometry: 1.0
species: 466092

466092
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Acetaldehyde_C2H4O

485990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Propionate__n_C30__C3H5O2

496409
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Ornithine_C5H13N2O2

514448
type: Reaction
kinetic law: 119699
product: 119687
reactant: 119675
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Guanosine_exchange

119759
type: LocalParameter
value: -0.163108

119747
type: LocalParameter
units: 017602
value: 0.0

119735
type: LocalParameter
value: 0.0

119723
type: LocalParameter
units: 017602
value: 999999.0

119711
type: LocalParameter
units: 017602
value: 0.0

119687
type: SpeciesReference
stoichiometry: 1.0
species: 495650

495650
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Guanosine_C10H13N5O5

119675
type: SpeciesReference
stoichiometry: 1.0
species: 478151

478151
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Guanosine_C10H13N5O5

495570
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycerol_2_phosphate_C3H7O6P

465372
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5_Dehydro_4_deoxy_D_glucarate_C6H6O7

471052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_carnitinyl_CoA_C28H46N8O18P3S

528306
type: Reaction
kinetic law: 209912
product: 209900
product: 209888
reactant: 209876
notes: GENE_ASSOCIATION: ( b0084 or b0635 or b3396 or b0149 ) PROTEIN_ASSOCIATION: ( FtsI ) or ( MrdA ) or ( MrcA ) or ( MrcB ) SUBSYSTEM: S_Murein_Biosynthesis PROTEIN_CLASS:
fast: false
reversible: false
name: R_murein_crosslinking_transpeptidase_1A_A2pm_D_ala___periplasm_

209972
type: LocalParameter
value: 0.0

209960
type: LocalParameter
units: 017602
value: 0.0

209948
type: LocalParameter
value: 0.0

209936
type: LocalParameter
units: 017602
value: 999999.0

209924
type: LocalParameter
units: 017602
value: 0.0

209900
type: SpeciesReference
stoichiometry: 1.0
species: 483091

483091
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

209888
type: SpeciesReference
stoichiometry: 2.0
species: 467592

467592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Alanine_C3H7NO2

209876
type: SpeciesReference
stoichiometry: 1.0
species: 483011

483011
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

476311
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Galacturonate_C6H9O7

534966
type: Reaction
fast: false
name: R_Phospholipase_A1__phosphatidylethanolamine__n_C180___periplasm_
product: 255628
product: 255641
reactant: 255616
notes: GENE_ASSOCIATION: b3821 PROTEIN_ASSOCIATION: PldA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.32
product: 255653
kinetic law: 255665
reactant: 255604
reversible: false

255628
type: SpeciesReference
stoichiometry: 1.0
species: 462233

462233
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_2_Acyl_sn_glycero_3_phosphoethanolamine__n_C180__C23H48NO7P1

255641
type: SpeciesReference
stoichiometry: 1.0
species: 478751

255616
type: SpeciesReference
stoichiometry: 1.0
species: 485151

485151
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_phosphatidylethanolamine__dioctadecanoyl__n_C180__C41H82N1O8P1

255653
type: SpeciesReference
stoichiometry: 1.0
species: 484211

484211
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_octadecanoate__n_C180__C18H35O2

255725
type: LocalParameter
value: 0.0

255713
type: LocalParameter
units: 017602
value: 0.0

255701
type: LocalParameter
value: 0.0

255689
type: LocalParameter
units: 017602
value: 999999.0

255677
type: LocalParameter
units: 017602
value: 0.0

255604
type: SpeciesReference
stoichiometry: 1.0
species: 478631

506748
type: Reaction
kinetic law: 075367
product: 075354
reactant: 075341
notes: GENE_ASSOCIATION: b0036 PROTEIN_ASSOCIATION: CaiD SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS:
fast: false
reversible: true
name: R_carnitine_CoA_racemase

075432
type: LocalParameter
value: 0.0

075419
type: LocalParameter
units: 017602
value: 0.0

075406
type: LocalParameter
value: 0.0

075393
type: LocalParameter
units: 017602
value: 0.0

075380
type: LocalParameter
units: 017602
value: 0.0

075354
type: SpeciesReference
stoichiometry: 1.0
species: 471052

075341
type: SpeciesReference
stoichiometry: 1.0
species: 471172

471172
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Carnitinyl_CoA_C28H46N8O18P3S

506529
type: Reaction
kinetic law: 073556
reactant: 073484
reactant: 073496
reactant: 073472
reversible: false
product: 073508
fast: false
product: 073532
product: 073544
notes: GENE_ASSOCIATION: b0914 PROTEIN_ASSOCIATION: MsbA SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:
name: R_core_oligosaccharide_lipid_A_transport_via_ABC_system__periplasm_
product: 073520

073617
type: LocalParameter
value: 0.0

073605
type: LocalParameter
units: 017602
value: 0.0

073592
type: LocalParameter
value: 0.0

073580
type: LocalParameter
units: 017602
value: 999999.0

073568
type: LocalParameter
units: 017602
value: 0.0

073484
type: SpeciesReference
stoichiometry: 1.0
species: 470772

470772
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

073496
type: SpeciesReference
stoichiometry: 1.0
species: 478591

073472
type: SpeciesReference
stoichiometry: 1.0
species: 469232

073508
type: SpeciesReference
stoichiometry: 1.0
species: 467132

073532
type: SpeciesReference
stoichiometry: 1.0
species: 485830

073544
type: SpeciesReference
stoichiometry: 1.0
species: 470812

470812
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

073520
type: SpeciesReference
stoichiometry: 1.0
species: 478711

505169
type: Reaction
notes: GENE_ASSOCIATION: b0312 PROTEIN_ASSOCIATION: BetB SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 1.2.1.8
name: R_betaine_aldehyde_dehydrogenase
product: 064063
fast: false
reversible: false
product: 064087
kinetic law: 064099
reactant: 064027
reactant: 064039
product: 064075
reactant: 064051

064063
type: SpeciesReference
stoichiometry: 1.0
species: 477551

477551
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Glycine_betaine_C5H11NO2

064087
type: SpeciesReference
stoichiometry: 1.0
species: 483391

064160
type: LocalParameter
value: 0.0

064147
type: LocalParameter
units: 017602
value: 0.0

064135
type: LocalParameter
value: 0.0

064123
type: LocalParameter
units: 017602
value: 999999.0

064111
type: LocalParameter
units: 017602
value: 0.0

064027
type: SpeciesReference
stoichiometry: 1.0
species: 469292

469292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Betaine_aldehyde_C5H12NO

064039
type: SpeciesReference
stoichiometry: 1.0
species: 478591

064075
type: SpeciesReference
stoichiometry: 2.0
species: 478711

064051
type: SpeciesReference
stoichiometry: 1.0
species: 483371

463013
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_2_hexadec_9_enoyl_sn_glycerol_3_phosphate_C19H36O7P1

501569
type: Reaction
notes: GENE_ASSOCIATION: b1623 PROTEIN_ASSOCIATION: Add SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.5.4.4
product: 041571
reactant: 041559
fast: false
reactant: 041535
reactant: 041547
reversible: false
product: 041583
kinetic law: 041595
name: R_Adenosine_deaminase

041571
type: SpeciesReference
stoichiometry: 1.0
species: 480111

041559
type: SpeciesReference
stoichiometry: 1.0
species: 478591

041535
type: SpeciesReference
stoichiometry: 1.0
species: 466972

041547
type: SpeciesReference
stoichiometry: 1.0
species: 478711

041583
type: SpeciesReference
stoichiometry: 1.0
species: 483431

041655
type: LocalParameter
value: -0.012341

041643
type: LocalParameter
units: 017602
value: 0.0

041631
type: LocalParameter
value: 0.0

041619
type: LocalParameter
units: 017602
value: 999999.0

041607
type: LocalParameter
units: 017602
value: 0.0

476111
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Galactarate_C6H8O8

505149
type: Reaction
fast: false
product: 063917
product: 063942
reactant: 063881
reversible: false
reactant: 063905
name: R_betaine_aldehyde_dehydrogenase
product: 063929
kinetic law: 063954
reactant: 063893
notes: GENE_ASSOCIATION: b0312 PROTEIN_ASSOCIATION: BetB SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 1.2.1.8

063917
type: SpeciesReference
stoichiometry: 1.0
species: 477551

063942
type: SpeciesReference
stoichiometry: 1.0
species: 483351

063881
type: SpeciesReference
stoichiometry: 1.0
species: 469292

063905
type: SpeciesReference
stoichiometry: 1.0
species: 483331

063929
type: SpeciesReference
stoichiometry: 2.0
species: 478711

064015
type: LocalParameter
value: -0.003027

064003
type: LocalParameter
units: 017602
value: 0.0

063990
type: LocalParameter
value: 0.0

063978
type: LocalParameter
units: 017602
value: 999999.0

063966
type: LocalParameter
units: 017602
value: 0.0

063893
type: SpeciesReference
stoichiometry: 1.0
species: 478591

470172
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Choline_C5H14NO

503909
type: Reaction
name: R_5_amino_6__5_phosphoribosylamino_uracil_reductase
reactant: 055949
product: 055986
kinetic law: 056011
reactant: 055961
reversible: false
notes: GENE_ASSOCIATION: b0414 PROTEIN_ASSOCIATION: RibDec SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 1.1.1.193
product: 055998
reactant: 055974
fast: false

055949
type: SpeciesReference
stoichiometry: 1.0
species: 465272

465272
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5_Amino_6__5__phosphoribosylamino_uracil_C9H13N4O9P

055986
type: SpeciesReference
stoichiometry: 1.0
species: 465252

465252
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5_Amino_6__5__phosphoribitylamino_uracil_C9H15N4O9P

056071
type: LocalParameter
value: 0.0

056059
type: LocalParameter
units: 017602
value: 3.56E-4

056047
type: LocalParameter
value: 0.0

056035
type: LocalParameter
units: 017602
value: 999999.0

056023
type: LocalParameter
units: 017602
value: 0.0

055961
type: SpeciesReference
stoichiometry: 1.0
species: 478711

055998
type: SpeciesReference
stoichiometry: 1.0
species: 483371

055974
type: SpeciesReference
stoichiometry: 1.0
species: 483391

489590
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Trimethylamine_N_oxide_C3H9NO

480191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Isethionic_acid_C2H5O4S

506389
type: Reaction
kinetic law: 072077
product: 072065
product: 072053
reactant: 072041
notes: GENE_ASSOCIATION: ( b1249 or b0789 ) PROTEIN_ASSOCIATION: ( Cls ) or ( YbhO ) SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS:
fast: false
reversible: true
name: R_cardiolipin_synthase__periplasmic__n_C161_

072138
type: LocalParameter
value: 0.0

072126
type: LocalParameter
units: 017602
value: 0.0

072113
type: LocalParameter
value: 0.0

072101
type: LocalParameter
units: 017602
value: 999999.0

072089
type: LocalParameter
units: 017602
value: -999999.0

072065
type: SpeciesReference
stoichiometry: 1.0
species: 477811

477811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Glycerol_C3H8O3

072053
type: SpeciesReference
stoichiometry: 1.0
species: 470512

470512
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_cardiolipin__tetrahexadec_9_enoyl__n_C161__C73H132O17P2

072041
type: SpeciesReference
stoichiometry: 2.0
species: 485350

485350
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphatidylglycerol__dihexadec_9_enoyl__n_C161__C38H70O10P1

471872
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dADP_C10H12N5O9P2

502789
type: Reaction
kinetic law: 049019
product: 049007
reactant: 048995
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_alanyl_D_alanine__DalaDala__transport_via_diffusion__extracellular_to_periplasm_

049079
type: LocalParameter
value: 0.0

049067
type: LocalParameter
units: 017602
value: 0.0

049055
type: LocalParameter
value: 0.0

049043
type: LocalParameter
units: 017602
value: 999999.0

049031
type: LocalParameter
units: 017602
value: -999999.0

049007
type: SpeciesReference
stoichiometry: 1.0
species: 467712

048995
type: SpeciesReference
stoichiometry: 1.0
species: 467692

467692
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Alanyl_D_alanine_C6H12N2O3

462673
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_dodecanoyl_sn_glycerol_3_phosphate_C15H30O7P1

531426
type: Reaction
product: 232557
name: R_nucleoside_triphosphatase__GTP_
notes: GENE_ASSOCIATION: b4161 PROTEIN_ASSOCIATION: YjeQ SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.6.1.15
reactant: 232544
product: 232570
fast: false
kinetic law: 232594
product: 232582
reversible: false
reactant: 232532

232557
type: SpeciesReference
stoichiometry: 1.0
species: 476572

476572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_GDP_C10H12N5O11P2

232544
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species: 478591

232570
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stoichiometry: 1.0
species: 478711

232657
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232644
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units: 017602
value: 0.0

232631
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value: 0.0

232619
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units: 017602
value: 999999.0

232607
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units: 017602
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232582
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stoichiometry: 1.0
species: 485830

232532
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stoichiometry: 1.0
species: 478311

478311
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_GTP_C10H12N5O14P3

493890
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_CO2_CO2

480871
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293

474631
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Fe_III_hydoxamate__unloaded_C9H18O6N3

540005
type: Reaction
product: 295120
kinetic law: 295156
fast: false
product: 295132
notes: GENE_ASSOCIATION: b0085 PROTEIN_ASSOCIATION: MurEec SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 6.3.2.13
reactant: 295096
reactant: 295071
product: 295144
product: 295108
reactant: 295084
reversible: false
name: R_UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimelate_synthetase

295120
type: SpeciesReference
stoichiometry: 1.0
species: 478711

295216
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value: 0.0

295204
type: LocalParameter
units: 017602
value: 0.022188

295192
type: LocalParameter
value: 0.0

295180
type: LocalParameter
units: 017602
value: 999999.0

295168
type: LocalParameter
units: 017602
value: 0.0

295132
type: SpeciesReference
stoichiometry: 1.0
species: 485830

295096
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stoichiometry: 1.0
species: 491030

491030
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

295071
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stoichiometry: 1.0
species: 461953

461953
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_meso_2_6_Diaminoheptanedioate_C7H14N2O4

295144
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stoichiometry: 1.0
species: 491470

491470
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

295108
type: SpeciesReference
stoichiometry: 1.0
species: 467132

295084
type: SpeciesReference
stoichiometry: 1.0
species: 469232

478171
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Guanosine_C10H13N5O5

537526
type: Reaction
reactant: 271779
notes: GENE_ASSOCIATION: b3029 PROTEIN_ASSOCIATION: YgiN SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS:
product: 271791
product: 271803
product: 271815
kinetic law: 271827
reactant: 271766
reversible: false
name: R_quinol_monooxygenase__Ubiquinol_8_
fast: false

271779
type: SpeciesReference
stoichiometry: 1.0
species: 487090

271791
type: SpeciesReference
stoichiometry: 2.0
species: 478711

271803
type: SpeciesReference
stoichiometry: 2.0
species: 484011

484011
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Superoxide_anion_O2

271815
type: SpeciesReference
stoichiometry: 1.0
species: 487070

271888
type: LocalParameter
value: -0.009314

271876
type: LocalParameter
units: 017602
value: 0.0

271864
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value: 0.0

271851
type: LocalParameter
units: 017602
value: 999999.0

271839
type: LocalParameter
units: 017602
value: 0.0

271766
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stoichiometry: 2.0
species: 483951

483951
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_O2_O2

510628
type: Reaction
kinetic law: 100627
product: 100615
reactant: 100603
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:
fast: false
reversible: false
name: R_enterobacterial_common_antigen__x4__core_oligosaccharide_lipid_A_transport__periplasm_to_extracellular_

100687
type: LocalParameter
value: 0.0

100675
type: LocalParameter
units: 017602
value: 0.0

100663
type: LocalParameter
value: 0.0

100651
type: LocalParameter
units: 017602
value: 999999.0

100639
type: LocalParameter
units: 017602
value: 0.0

100615
type: SpeciesReference
stoichiometry: 1.0
species: 473992

473992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293

100603
type: SpeciesReference
stoichiometry: 1.0
species: 474012

474012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

499609
type: Reaction
notes: GENE_ASSOCIATION: ( b2323 or b1095 ) PROTEIN_ASSOCIATION: ( FabB ) or ( FabF ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 2.3.1.41
kinetic law: 029615
reversible: false
reactant: 029542
name: R_3_oxoacyl_acyl_carrier_protein_synthase__n_C140_
reactant: 029567
fast: false
product: 029603
product: 029591
reactant: 029555
product: 029579

029676
type: LocalParameter
value: 0.0

029663
type: LocalParameter
units: 017602
value: 0.16407

029651
type: LocalParameter
value: 0.0

029639
type: LocalParameter
units: 017602
value: 999999.0

029627
type: LocalParameter
units: 017602
value: 0.0

029542
type: SpeciesReference
stoichiometry: 1.0
species: 472332

472332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

029567
type: SpeciesReference
stoichiometry: 1.0
species: 481171

029603
type: SpeciesReference
stoichiometry: 1.0
species: 470632

029591
type: SpeciesReference
stoichiometry: 1.0
species: 465632

029555
type: SpeciesReference
stoichiometry: 1.0
species: 478711

029579
type: SpeciesReference
stoichiometry: 1.0
species: 464472

464472
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

536166
type: Reaction
reactant: 263263
reactant: 263250
fast: false
notes: GENE_ASSOCIATION: b2536 PROTEIN_ASSOCIATION: HcaT SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
product: 263287
kinetic law: 263299
product: 263275
reversible: true
name: R_3_phenylpropionate_transport_via_proton_symport__reversible__periplasm_

263263
type: SpeciesReference
stoichiometry: 1.0
species: 486330

486330
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phenylpropanoate_C9H9O2

263250
type: SpeciesReference
stoichiometry: 1.0
species: 478751

263287
type: SpeciesReference
stoichiometry: 1.0
species: 486290

486290
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phenylpropanoate_C9H9O2

263360
type: LocalParameter
value: 0.0

263348
type: LocalParameter
units: 017602
value: 0.0

263336
type: LocalParameter
value: 0.0

263324
type: LocalParameter
units: 017602
value: 999999.0

263312
type: LocalParameter
units: 017602
value: -999999.0

263275
type: SpeciesReference
stoichiometry: 1.0
species: 478711

526127
type: Reaction
reactant: 193170
reactant: 193157
product: 193182
kinetic law: 193207
reversible: false
notes: GENE_ASSOCIATION: b0344 PROTEIN_ASSOCIATION: LacZ SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.2.1.23
name: R_b_galactosidase
product: 193195
fast: false

193170
type: SpeciesReference
stoichiometry: 1.0
species: 480671

480671
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Lactose_C12H22O11

193157
type: SpeciesReference
stoichiometry: 1.0
species: 478591

193182
type: SpeciesReference
stoichiometry: 1.0
species: 476011

476011
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Galactose_C6H12O6

193267
type: LocalParameter
value: 0.004657

193255
type: LocalParameter
units: 017602
value: 0.0

193243
type: LocalParameter
value: 0.0

193231
type: LocalParameter
units: 017602
value: 0.0

193219
type: LocalParameter
units: 017602
value: 0.0

193195
type: SpeciesReference
stoichiometry: 1.0
species: 476871

476871
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glucose_C6H12O6

537386
type: Reaction
product: 270945
notes: GENE_ASSOCIATION: ( b2418 or b1636 ) PROTEIN_ASSOCIATION: ( PdxK ) or ( PdxYec ) SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 2.7.1.35
reversible: false
reactant: 270921
kinetic law: 270969
reactant: 270908
product: 270933
name: R_pyridoxal_kinase
fast: false
product: 270957

270945
type: SpeciesReference
stoichiometry: 1.0
species: 478711

270921
type: SpeciesReference
stoichiometry: 1.0
species: 486970

486970
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyridoxal_C8H9NO3

271029
type: LocalParameter
value: -0.009314

271017
type: LocalParameter
units: 017602
value: 0.0

271005
type: LocalParameter
value: 0.0

270993
type: LocalParameter
units: 017602
value: 999999.0

270981
type: LocalParameter
units: 017602
value: 0.0

270908
type: SpeciesReference
stoichiometry: 1.0
species: 469232

270933
type: SpeciesReference
stoichiometry: 1.0
species: 467132

270957
type: SpeciesReference
stoichiometry: 1.0
species: 486950

475471
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Glucose_1_phosphate_C6H11O9P

500749
type: Reaction
product: 036769
fast: false
reversible: false
reactant: 036757
product: 036781
notes: GENE_ASSOCIATION: b1119 PROTEIN_ASSOCIATION: NagK SUBSYSTEM: S_Murein_Recycling PROTEIN_CLASS: 2.7.1.59
kinetic law: 036805
product: 036793
name: R_N_acetylglucosamine_kinase
reactant: 036745

036769
type: SpeciesReference
stoichiometry: 1.0
species: 466352

466352
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N_Acetyl_D_glucosamine_6_phosphate_C8H14NO9P

036757
type: SpeciesReference
stoichiometry: 1.0
species: 469232

036781
type: SpeciesReference
stoichiometry: 1.0
species: 467132

036865
type: LocalParameter
value: 0.0

036853
type: LocalParameter
units: 017602
value: 0.0

036841
type: LocalParameter
value: 0.0

036829
type: LocalParameter
units: 017602
value: 999999.0

036817
type: LocalParameter
units: 017602
value: 0.0

036793
type: SpeciesReference
stoichiometry: 1.0
species: 478711

036745
type: SpeciesReference
stoichiometry: 1.0
species: 466372

466372
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N_Acetyl_D_glucosamine_C8H15NO6

535186
type: Reaction
name: R_Phospholipase_A2__phosphatidate__n_C141___periplasm_
reactant: 257081
notes: GENE_ASSOCIATION: b3821 PROTEIN_ASSOCIATION: PldA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.4
product: 257093
product: 257117
reversible: false
kinetic law: 257129
fast: false
reactant: 257069
product: 257105

257081
type: SpeciesReference
stoichiometry: 1.0
species: 484751

484751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate_C31H55O8P1

257093
type: SpeciesReference
stoichiometry: 1.0
species: 461433

461433
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_tetradec_7_enoyl_sn_glycerol_3_phosphate_C17H31O7P1

257117
type: SpeciesReference
stoichiometry: 1.0
species: 490490

490490
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_tetradecenoate__n_C141__C14H25O2

257191
type: LocalParameter
value: 0.0

257178
type: LocalParameter
units: 017602
value: 0.0

257165
type: LocalParameter
value: 0.0

257153
type: LocalParameter
units: 017602
value: 999999.0

257141
type: LocalParameter
units: 017602
value: 0.0

257069
type: SpeciesReference
stoichiometry: 1.0
species: 478631

257105
type: SpeciesReference
stoichiometry: 1.0
species: 478751

539806
type: Reaction
name: R_Tryptophanyl_tRNA_synthetase
reactant: 292816
reactant: 292791
notes: GENE_ASSOCIATION: b3384 PROTEIN_ASSOCIATION: TrpS SUBSYSTEM: S_tRNA_Charging PROTEIN_CLASS: 6.1.1.2
fast: false
product: 292828
reactant: 292804
kinetic law: 292864
reversible: false
product: 292840
product: 292852

292816
type: SpeciesReference
stoichiometry: 1.0
species: 490250

490250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Tryptophan_C11H12N2O2

292791
type: SpeciesReference
stoichiometry: 1.0
species: 469232

292828
type: SpeciesReference
stoichiometry: 1.0
species: 468052

292804
type: SpeciesReference
stoichiometry: 1.0
species: 490190

490190
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tRNA_Trp__R

292929
type: LocalParameter
value: -0.139591

292916
type: LocalParameter
units: 017602
value: 0.0

292903
type: LocalParameter
value: 0.0

292890
type: LocalParameter
units: 017602
value: 999999.0

292877
type: LocalParameter
units: 017602
value: 0.0

292840
type: SpeciesReference
stoichiometry: 1.0
species: 486210

292852
type: SpeciesReference
stoichiometry: 1.0
species: 490310

490310
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Tryptophanyl_tRNA_Trp__C11H11N2OR

497409
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Urea_CH4N2O

533926
type: Reaction
kinetic law: 248952
product: 248940
reactant: 248927
notes: GENE_ASSOCIATION: ( b3612 or b4395 or b0755 ) PROTEIN_ASSOCIATION: ( YibO ) or ( GpmB ) or ( GpmA ) SUBSYSTEM: S_GlycolysisGluconeogenesis PROTEIN_CLASS: 5.4.2.1
fast: false
reversible: true
name: R_phosphoglycerate_mutase

249012
type: LocalParameter
value: 0.0

249000
type: LocalParameter
units: 017602
value: -16.986888

248988
type: LocalParameter
value: 0.0

248976
type: LocalParameter
units: 017602
value: 999999.0

248964
type: LocalParameter
units: 017602
value: -999999.0

248940
type: SpeciesReference
stoichiometry: 1.0
species: 464632

464632
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Phospho_D_glycerate_C3H4O7P

248927
type: SpeciesReference
stoichiometry: 1.0
species: 463393

463393
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glycerate_2_phosphate_C3H4O7P

519867
type: Reaction
product: 154630
reactant: 154618
reactant: 154606
reversible: false
product: 154642
name: R_glucosamine_6_phosphate_deaminase
kinetic law: 154654
notes: GENE_ASSOCIATION: b0678 PROTEIN_ASSOCIATION: NagB SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.5.99.6
fast: false

154630
type: SpeciesReference
stoichiometry: 1.0
species: 474232

154618
type: SpeciesReference
stoichiometry: 1.0
species: 478591

154606
type: SpeciesReference
stoichiometry: 1.0
species: 476391

476391
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glucosamine_6_phosphate_C6H13NO8P

154642
type: SpeciesReference
stoichiometry: 1.0
species: 483431

154715
type: LocalParameter
value: -0.009314

154703
type: LocalParameter
units: 017602
value: 0.0

154691
type: LocalParameter
value: 0.0

154678
type: LocalParameter
units: 017602
value: 999999.0

154666
type: LocalParameter
units: 017602
value: 0.0

474191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_ethanesulfonate_C2H5O3S

463313
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Octaprenyl_6_hydroxyphenol_C46H70O2

540245
type: Reaction
kinetic law: 298101
product: 298088
reactant: 298076
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_UDP_D_glucuronate_transport_via_diffusion__extracellular_to_periplasm_

298161
type: LocalParameter
value: 0.0

298149
type: LocalParameter
units: 017602
value: 0.0

298137
type: LocalParameter
value: 0.0

298125
type: LocalParameter
units: 017602
value: 999999.0

298113
type: LocalParameter
units: 017602
value: -999999.0

298088
type: SpeciesReference
stoichiometry: 1.0
species: 491450

491450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_UDP_D_glucuronate_C15H19N2O18P2

298076
type: SpeciesReference
stoichiometry: 1.0
species: 491430

474311
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Formaldehyde_CH2O

495849
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Hexanoate__n_C60__C6H11O2

535726
type: Reaction
kinetic law: 260619
reactant: 260559
notes: GENE_ASSOCIATION: ( b2744 or b2502 ) PROTEIN_ASSOCIATION: ( SurE ) or ( Ppx ) SUBSYSTEM: S_Anaplerotic_Reactions PROTEIN_CLASS: 3.6.1.1
name: R_inorganic_triphosphatase
reactant: 260571
reversible: false
product: 260607
product: 260595
product: 260583
fast: false

260679
type: LocalParameter
value: -0.009314

260667
type: LocalParameter
units: 017602
value: 0.0

260655
type: LocalParameter
value: 0.0

260643
type: LocalParameter
units: 017602
value: 999999.0

260631
type: LocalParameter
units: 017602
value: 0.0

260559
type: SpeciesReference
stoichiometry: 1.0
species: 478591

260571
type: SpeciesReference
stoichiometry: 1.0
species: 486270

486270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Inorganic_triphosphate_HO10P3

260607
type: SpeciesReference
stoichiometry: 1.0
species: 486210

260595
type: SpeciesReference
stoichiometry: 1.0
species: 485830

260583
type: SpeciesReference
stoichiometry: 1.0
species: 478711

528686
type: Reaction
name: R_Methionyl_tRNA_synthetase
reversible: false
product: 214102
notes: GENE_ASSOCIATION: b2114 PROTEIN_ASSOCIATION: MetG SUBSYSTEM: S_tRNA_Charging PROTEIN_CLASS: 6.1.1.10
reactant: 214042
fast: false
product: 214090
reactant: 214066
reactant: 214054
kinetic law: 214114
product: 214078

214102
type: SpeciesReference
stoichiometry: 1.0
species: 486210

214042
type: SpeciesReference
stoichiometry: 1.0
species: 469232

214090
type: SpeciesReference
stoichiometry: 1.0
species: 482231

482231
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Methionyl_tRNA__Met__C5H10NOSR

214066
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species: 490070

490070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tRNA_Met__R

214054
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stoichiometry: 1.0
species: 482031

482031
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Methionine_C5H11NO2S

214174
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value: -0.133886

214162
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units: 017602
value: 0.0

214150
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value: 0.0

214138
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units: 017602
value: 999999.0

214126
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units: 017602
value: 0.0

214078
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stoichiometry: 1.0
species: 468052

469612
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Calcium_Ca

493110
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_N_Acetyl_D_glucosamine_C8H15NO6

483131
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Nitrous_oxide_N2O

534806
type: Reaction
kinetic law: 254615
notes: GENE_ASSOCIATION: b3821 PROTEIN_ASSOCIATION: PldA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.32
reversible: false
reactant: 254579
product: 254591
name: R_Phospholipase_A1__phosphatidate__n_C161___periplasm_
product: 254603
fast: false
reactant: 254567

254677
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value: 0.0

254664
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units: 017602
value: 0.0

254651
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value: 0.0

254639
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units: 017602
value: 999999.0

254627
type: LocalParameter
units: 017602
value: 0.0

254579
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stoichiometry: 1.0
species: 484831

484831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate_C35H63O8P1

254591
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stoichiometry: 1.0
species: 463013

254603
type: SpeciesReference
stoichiometry: 1.0
species: 478951

254567
type: SpeciesReference
stoichiometry: 1.0
species: 478631

522487
type: Reaction
reactant: 170752
kinetic law: 170789
product: 170777
product: 170765
name: R_D_glycero_D_manno_heptose_1_7_bisphosphate_phosphatase
notes: GENE_ASSOCIATION: b0200 PROTEIN_ASSOCIATION: GmhB SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:
reversible: false
reactant: 170740
fast: false

170752
type: SpeciesReference
stoichiometry: 1.0
species: 478591

170850
type: LocalParameter
value: 0.0

170838
type: LocalParameter
units: 017602
value: 0.0

170826
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value: 0.0

170814
type: LocalParameter
units: 017602
value: 999999.0

170801
type: LocalParameter
units: 017602
value: 0.0

170777
type: SpeciesReference
stoichiometry: 1.0
species: 485830

170765
type: SpeciesReference
stoichiometry: 1.0
species: 477951

477951
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glycero_D_manno_heptose_1_phosphate_C7H13O10P

170740
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stoichiometry: 1.0
species: 477931

477931
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glycero_D_manno_heptose_1_7_bisphosphate_C7H12O13P2

530407
type: Reaction
kinetic law: 226020
product: 226008
reactant: 225996
notes: GENE_ASSOCIATION: b3816 PROTEIN_ASSOCIATION: CorA SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
fast: false
reversible: false
name: R_nickel__2__transport_in_via_permease__no_H_

226080
type: LocalParameter
value: 0.0

226068
type: LocalParameter
units: 017602
value: 0.0

226056
type: LocalParameter
value: 0.0

226044
type: LocalParameter
units: 017602
value: 999999.0

226032
type: LocalParameter
units: 017602
value: 0.0

226008
type: SpeciesReference
stoichiometry: 1.0
species: 483491

483491
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_nickel_Ni

225996
type: SpeciesReference
stoichiometry: 1.0
species: 483531

483531
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_nickel_Ni

536946
type: Reaction
product: 268152
fast: false
reactant: 268140
product: 268164
name: R_Phosphatidylserine_syntase__n_C160_
reactant: 268128
product: 268176
kinetic law: 268188
reversible: false
notes: GENE_ASSOCIATION: b2585 PROTEIN_ASSOCIATION: PssA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.8.8

268152
type: SpeciesReference
stoichiometry: 1.0
species: 470572

470572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_CMP_C9H12N3O8P

268140
type: SpeciesReference
stoichiometry: 1.0
species: 487830

487830
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Serine_C3H7NO3

268164
type: SpeciesReference
stoichiometry: 1.0
species: 478711

268128
type: SpeciesReference
stoichiometry: 1.0
species: 469972

469972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

268176
type: SpeciesReference
stoichiometry: 1.0
species: 486690

486690
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

268248
type: LocalParameter
value: 0.0

268236
type: LocalParameter
units: 017602
value: 0.050965

268224
type: LocalParameter
value: 0.0

268212
type: LocalParameter
units: 017602
value: 999999.0

268200
type: LocalParameter
units: 017602
value: 0.0

462773
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_2_Dehydro_3_deoxy_D_gluconate_C6H9O6

484990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

506129
type: Reaction
kinetic law: 070282
product: 070270
product: 070258
reactant: 070246
notes: GENE_ASSOCIATION: ( ( b0615 and b0616 and b0617 ) and b0614 ) PROTEIN_ASSOCIATION: ( CitDEF and CitX ) SUBSYSTEM: S_Citric_Acid_Cycle PROTEIN_CLASS: 4.1.3.6
fast: false
reversible: false
name: R_Citrate_lyase

070342
type: LocalParameter
value: -0.009314

070330
type: LocalParameter
units: 017602
value: 0.0

070318
type: LocalParameter
value: 0.0

070306
type: LocalParameter
units: 017602
value: 999999.0

070294
type: LocalParameter
units: 017602
value: 0.0

070270
type: SpeciesReference
stoichiometry: 1.0
species: 484071

484071
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Oxaloacetate_C4H2O5

070258
type: SpeciesReference
stoichiometry: 1.0
species: 465932

465932
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetate_C2H3O2

070246
type: SpeciesReference
stoichiometry: 1.0
species: 470272

470272
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Citrate_C6H5O7

523487
type: Reaction
kinetic law: 177015
product: 177003
reactant: 176991
notes: GENE_ASSOCIATION: s0001 PROTEIN_ASSOCIATION: SPONTANEOUS SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_h2s_transport__periplasm_

177076
type: LocalParameter
value: -0.045172

177064
type: LocalParameter
units: 017602
value: 0.0

177052
type: LocalParameter
value: 0.0

177039
type: LocalParameter
units: 017602
value: 999999.0

177027
type: LocalParameter
units: 017602
value: 0.0

177003
type: SpeciesReference
stoichiometry: 1.0
species: 478691

478691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Hydrogen_sulfide_H2S

176991
type: SpeciesReference
stoichiometry: 1.0
species: 478651

478651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Hydrogen_sulfide_H2S

493350
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_beta_Alanine_C3H7NO2

495870
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Isoleucine_C6H13NO2

461373
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_octadecanoyl_sn_glycerol_3_phosphate_C21H41O7P1

512628
type: Reaction
kinetic law: 110877
product: 110865
reactant: 110853
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_CO2_exchange

110939
type: LocalParameter
value: 0.0

110926
type: LocalParameter
units: 017602
value: 19.899398

110914
type: LocalParameter
value: 0.0

110902
type: LocalParameter
units: 017602
value: 999999.0

110889
type: LocalParameter
units: 017602
value: -999999.0

110865
type: SpeciesReference
stoichiometry: 1.0
species: 493890

110853
type: SpeciesReference
stoichiometry: 1.0
species: 470652

470652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_CO2_CO2

488830
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_tartrate_C4H4O6

468932
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Ascorbate_C6H8O6

485490
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C141__C34H61O13P2

470992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_coprogen_unloaded__no_Fe_III___C35H52N6O13

538546
type: Reaction
kinetic law: 278187
product: 278174
product: 278162
reactant: 278150
notes: GENE_ASSOCIATION: b2366 PROTEIN_ASSOCIATION: DsdA SUBSYSTEM: S_Glycine_and_Serine_Metabolism PROTEIN_CLASS:
fast: false
reversible: false
name: R_D_serine_deaminase

278247
type: LocalParameter
value: -0.012341

278235
type: LocalParameter
units: 017602
value: 0.0

278223
type: LocalParameter
value: 0.0

278211
type: LocalParameter
units: 017602
value: 0.0

278199
type: LocalParameter
units: 017602
value: 0.0

278174
type: SpeciesReference
stoichiometry: 1.0
species: 487010

278162
type: SpeciesReference
stoichiometry: 1.0
species: 483431

278150
type: SpeciesReference
stoichiometry: 1.0
species: 487770

487770
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Serine_C3H7NO3

532746
type: Reaction
kinetic law: 241030
product: 240981
notes: GENE_ASSOCIATION: b0914 PROTEIN_ASSOCIATION: MsbA SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
name: R_phosphatidate_transport_via_ABC_system__n_C160__periplasm_
reactant: 240945
reactant: 240969
product: 241006
product: 241018
reversible: false
fast: false
product: 240994
reactant: 240957

241092
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value: -0.020956

241079
type: LocalParameter
units: 017602
value: 0.0

241067
type: LocalParameter
value: 0.0

241054
type: LocalParameter
units: 017602
value: 999999.0

241042
type: LocalParameter
units: 017602
value: 0.0

240981
type: SpeciesReference
stoichiometry: 1.0
species: 467132

240945
type: SpeciesReference
stoichiometry: 1.0
species: 469232

240969
type: SpeciesReference
stoichiometry: 1.0
species: 484771

484771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_dihexadecanoyl_sn_glycerol_3_phosphate_C35H67O8P1

241006
type: SpeciesReference
stoichiometry: 1.0
species: 485830

241018
type: SpeciesReference
stoichiometry: 1.0
species: 484791

484791
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_2_dihexadecanoyl_sn_glycerol_3_phosphate_C35H67O8P1

240994
type: SpeciesReference
stoichiometry: 1.0
species: 478711

240957
type: SpeciesReference
stoichiometry: 1.0
species: 478591

528866
type: Reaction
kinetic law: 215274
product: 215261
reactant: 215249
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_myo_inositol_phosphate_transport_via_diffusion__extracellular_to_periplasm_

215334
type: LocalParameter
value: 0.0

215322
type: LocalParameter
units: 017602
value: 0.0

215310
type: LocalParameter
value: 0.0

215298
type: LocalParameter
units: 017602
value: 999999.0

215286
type: LocalParameter
units: 017602
value: 0.0

215261
type: SpeciesReference
stoichiometry: 1.0
species: 482371

482371
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_myo_Inositol_hexakisphosphate_C6H6O24P6

215249
type: SpeciesReference
stoichiometry: 1.0
species: 482351

482351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_myo_Inositol_hexakisphosphate_C6H6O24P6

512928
type: Reaction
kinetic law: 112330
product: 112318
reactant: 112305
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_dAMP_exchange

112395
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value: -0.169395

112382
type: LocalParameter
units: 017602
value: 0.0

112369
type: LocalParameter
value: 0.0

112356
type: LocalParameter
units: 017602
value: 999999.0

112343
type: LocalParameter
units: 017602
value: 0.0

112318
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stoichiometry: 1.0
species: 494190

494190
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_dAMP_C10H12N5O6P

112305
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stoichiometry: 1.0
species: 471912

471912
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_dAMP_C10H12N5O6P

526027
type: Reaction
name: R_Potassium_ABC_transporter__periplasm_
product: 192593
reactant: 192532
reversible: false
product: 192581
reactant: 192544
fast: false
notes: GENE_ASSOCIATION: ( b0698 and b0697 and b0696 ) PROTEIN_ASSOCIATION: ( KdpA and KdpB and KdpC ) SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
product: 192569
kinetic law: 192617
product: 192605
reactant: 192557

192593
type: SpeciesReference
stoichiometry: 1.0
species: 480271

480271
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_potassium_K

192532
type: SpeciesReference
stoichiometry: 1.0
species: 469232

192581
type: SpeciesReference
stoichiometry: 1.0
species: 478711

192544
type: SpeciesReference
stoichiometry: 1.0
species: 478591

192569
type: SpeciesReference
stoichiometry: 1.0
species: 467132

192680
type: LocalParameter
value: -0.006985

192667
type: LocalParameter
units: 017602
value: 0.0

192654
type: LocalParameter
value: 0.0

192641
type: LocalParameter
units: 017602
value: 999999.0

192629
type: LocalParameter
units: 017602
value: 0.0

192605
type: SpeciesReference
stoichiometry: 1.0
species: 485830

192557
type: SpeciesReference
stoichiometry: 1.0
species: 480311

480311
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_potassium_K

541005
type: Reaction
name: R_L_xylulokinase
reactant: 304796
kinetic law: 304856
fast: false
product: 304844
reactant: 304808
product: 304820
reversible: false
product: 304832
notes: GENE_ASSOCIATION: ( b0063 or b3580 ) PROTEIN_ASSOCIATION: ( AraB ) or ( LyxK ) SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 2.7.1.53

304796
type: SpeciesReference
stoichiometry: 1.0
species: 469232

304919
type: LocalParameter
value: -0.013971

304906
type: LocalParameter
units: 017602
value: 0.0

304893
type: LocalParameter
value: 0.0

304880
type: LocalParameter
units: 017602
value: 999999.0

304868
type: LocalParameter
units: 017602
value: 0.0

304844
type: SpeciesReference
stoichiometry: 1.0
species: 492250

492250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Xylulose_5_phosphate_C5H9O8P

304808
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stoichiometry: 1.0
species: 492350

304820
type: SpeciesReference
stoichiometry: 1.0
species: 467132

304832
type: SpeciesReference
stoichiometry: 1.0
species: 478711

506089
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kinetic law: 070027
product: 070014
product: 070001
reactant: 069988
notes: GENE_ASSOCIATION: b4039 PROTEIN_ASSOCIATION: UbiC SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
fast: false
reversible: false
name: R_Chorismate_pyruvate_lyase

070089
type: LocalParameter
value: 0.0

070077
type: LocalParameter
units: 017602
value: 1.78E-4

070065
type: LocalParameter
value: 0.0

070053
type: LocalParameter
units: 017602
value: 999999.0

070040
type: LocalParameter
units: 017602
value: 0.0

070014
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stoichiometry: 1.0
species: 487010

070001
type: SpeciesReference
stoichiometry: 1.0
species: 464972

464972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_4_Hydroxybenzoate_C7H5O3

069988
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stoichiometry: 1.0
species: 470232

470232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_chorismate_C10H8O6

537166
type: Reaction
kinetic law: 269610
reversible: false
notes: GENE_ASSOCIATION: ( b1296 or b0692 ) PROTEIN_ASSOCIATION: ( PuuP ) or ( PotEec ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
product: 269585
reactant: 269573
product: 269598
reactant: 269561
name: R_putrescine_transport_in_via_proton_symport
fast: false

269670
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value: -0.004657

269658
type: LocalParameter
units: 017602
value: 0.0

269646
type: LocalParameter
value: 0.0

269634
type: LocalParameter
units: 017602
value: 999999.0

269622
type: LocalParameter
units: 017602
value: 0.0

269585
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stoichiometry: 1.0
species: 478711

269573
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stoichiometry: 1.0
species: 486891

486891
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Putrescine_C4H14N2

269598
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stoichiometry: 1.0
species: 486870

269561
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stoichiometry: 1.0
species: 478751

532406
type: Reaction
kinetic law: 238741
product: 238729
reactant: 238717
reactant: 238705
notes: GENE_ASSOCIATION: b0350 PROTEIN_ASSOCIATION: MhpD SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 4.2.1.80
fast: false
reversible: false
name: R_2_oxopent_4_enoate_hydratase

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initial concentration: NaN
initial amount: NaN
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name: M_4_Hydroxy_2_oxopentanoate_C5H7O4

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initial amount: NaN
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name: M_2_Oxopent_4_enoate_C5H5O3

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initial concentration: NaN
initial amount: NaN
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name: M_Maltotriose_C18H32O16

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boundary condition: true
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initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycerol_3_phosphate_C3H7O6P

531026
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notes: GENE_ASSOCIATION: ( b4374 or b2744 ) PROTEIN_ASSOCIATION: ( YjjG ) or ( SurE ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.1.3.5
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kinetic law: 230120
reactant: 230072
product: 230096
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product: 230108
reactant: 230084

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units: 017602
value: 999999.0

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stoichiometry: 1.0
species: 478591

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initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Uridine_C9H12N2O6

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491530
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initial amount: NaN
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name: M_UMP_C9H11N2O9P

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initial amount: NaN
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name: M_3__3_hydroxy_phenyl_propionate_C9H9O3

530847
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kinetic law: 229030
product: 229018
product: 229006
reactant: 228994
notes: GENE_ASSOCIATION: b2262 PROTEIN_ASSOCIATION: MenB SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 4.1.3.36
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reversible: false
name: R_naphthoate_synthase

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species: 472732

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_4_Dihydroxy_2_naphthoate_C11H7O4

229006
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species: 470692

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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_O_Succinylbenzoyl_CoA_C32H39N7O20P3S

507128
type: Reaction
product: 078712
reactant: 078675
product: 078725
kinetic law: 078737
notes: GENE_ASSOCIATION: b3425 PROTEIN_ASSOCIATION: GlpE SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 2.8.1.1
product: 078699
name: R_Cyanide_sulfurtransferase
fast: false
reactant: 078687
reversible: false

078712
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species: 488134

488134
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Sulfite_O3S

078675
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species: 471452

471452
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Hydrogen_cyanide_CHN

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species: 488950

488950
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Thiocyanate_CNS

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value: 0.02864

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units: 017602
value: 0.0

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units: 017602
value: 0.0

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species: 490330

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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Thiosulfate_O3S2

527886
type: Reaction
fast: false
kinetic law: 204888
notes: GENE_ASSOCIATION: b3605 PROTEIN_ASSOCIATION: LldD SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS: 1.1.2.3
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product: 204876
reactant: 204852
product: 204864
name: R_L_Lactate_dehydrogenase__ubiquinone_
reactant: 204840

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units: 017602
value: 0.0

204924
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value: 999999.0

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204876
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species: 487090

204852
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stoichiometry: 1.0
species: 487070

204864
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stoichiometry: 1.0
species: 480571

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_L_Lactate_C3H5O3

496230
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Molybdate_MoO4

493770
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cadmium_Cd

540306
type: Reaction
notes: GENE_ASSOCIATION: b0086 PROTEIN_ASSOCIATION: MurFec SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 6.3.2.15
product: 298980
fast: false
product: 298955
reversible: false
name: R_UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_synthetase
reactant: 298943
product: 298967
kinetic law: 299004
product: 298992
reactant: 298919
reactant: 298931

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species: 491470

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species: 478711

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value: 0.022188

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299028
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species: 491490

491490
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initial amount: NaN
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species: 467672

467672
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_D_Alanyl_D_alanine_C6H12N2O3

298931
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stoichiometry: 1.0
species: 469232

476911
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Glucose_C6H12O6

494150
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cytidine_C9H13N3O5

536086
type: Reaction
fast: false
product: 262766
reactant: 262741
product: 262778
product: 262754
name: R_prephenate_dehydratase
reversible: false
reactant: 262729
notes: GENE_ASSOCIATION: b2599 PROTEIN_ASSOCIATION: PheA SUBSYSTEM: S_Tyrosine__Tryptophan__and_Phenylalanine_Metabolism PROTEIN_CLASS: 4.2.1.51
kinetic law: 262790

262766
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stoichiometry: 1.0
species: 478591

262741
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stoichiometry: 1.0
species: 486190

486190
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Prephenate_C10H8O6

262778
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species: 485810

485810
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phenylpyruvate_C9H7O3

262754
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species: 470632

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stoichiometry: 1.0
species: 478711

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value: 0.140493

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262815
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262802
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units: 017602
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508348
type: Reaction
reactant: 086498
reactant: 086511
kinetic law: 086547
name: R_deoxycytidine_deaminase
notes: GENE_ASSOCIATION: b2143 PROTEIN_ASSOCIATION: Cdd SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.5.4.14
reactant: 086486
reversible: false
product: 086535
fast: false
product: 086523

086498
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stoichiometry: 1.0
species: 478711

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stoichiometry: 1.0
species: 478591

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value: 0.0

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units: 017602
value: 0.0

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086486
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stoichiometry: 1.0
species: 472252

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species: 483431

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species: 473812

473812
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Deoxyuridine_C9H12N2O5

500489
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kinetic law: 035237
product: 035225
reactant: 035213
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_acetoacetate_transport_via_diffusion__extracellular_to_periplasm_

035298
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035286
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units: 017602
value: 0.0

035274
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035262
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units: 017602
value: 999999.0

035250
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units: 017602
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035225
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stoichiometry: 1.0
species: 466032

466032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Acetoacetate_C4H5O3

035213
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species: 466012

466012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Acetoacetate_C4H5O3

489790
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Trehalose_C12H22O11

503849
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fast: false
product: 055610
reactant: 055562
product: 055598
reversible: true
reactant: 055574
kinetic law: 055622
product: 055586
reactant: 055549
name: R_8_amino_7_oxononanoate_synthase
notes: GENE_ASSOCIATION: b0776 PROTEIN_ASSOCIATION: BioF SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 2.3.1.47

055610
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species: 470692

055562
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species: 478711

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species: 470632

055574
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stoichiometry: 1.0
species: 485890

485890
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pimeloyl_CoA_C28H41N7O19P3S

055683
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055671
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units: 017602
value: 0.0

055658
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055646
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value: 999999.0

055634
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species: 465612

465612
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_8_Amino_7_oxononanoate_C9H17NO3

055549
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species: 467612

467612
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_L_Alanine_C3H7NO2

485570
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C161__C38H69O13P2

474252
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Fructose_6_phosphate_C6H11O9P

499209
type: Reaction
notes: GENE_ASSOCIATION: b3580 PROTEIN_ASSOCIATION: LyxK SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
fast: false
product: 026934
product: 026946
product: 026922
reactant: 026898
reversible: false
kinetic law: 026958
reactant: 026910
name: R_3_keto_L_gulonate_kinase

026934
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species: 467132

026946
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species: 478711

026922
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species: 463673

463673
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_keto_L_gulonate_6_phosphate_C6H8O10P

026898
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stoichiometry: 1.0
species: 463672

463672
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_3_Dehydro_L_gulonate_C6H9O7

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value: -0.011642

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units: 017602
value: 0.0

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026970
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units: 017602
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species: 469232

506628
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reactant: 074400
kinetic law: 074484
product: 074436
product: 074460
reactant: 074412
reactant: 074424
fast: false
notes: GENE_ASSOCIATION: ( b0153 and b0151 and b0152 ) PROTEIN_ASSOCIATION: ( FhuB and FhuC and FhuD ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
product: 074448
name: R_coprogen_transport_via_ABC_system__periplasm_
product: 074472
reversible: false

074400
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stoichiometry: 1.0
species: 469232

074544
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074532
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units: 017602
value: 0.0

074520
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074508
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units: 017602
value: 999999.0

074496
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units: 017602
value: 0.0

074436
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stoichiometry: 1.0
species: 467132

074460
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species: 478711

074412
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species: 478591

074424
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stoichiometry: 1.0
species: 470952

470952
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_coprogen_C35H52N6O13Fe

074448
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stoichiometry: 1.0
species: 470912

470912
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_coprogen_C35H52N6O13Fe

074472
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stoichiometry: 1.0
species: 485830

473252
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Dopamine_C8H12NO2

535626
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name: R_pantothenate_kinase
kinetic law: 260004
fast: false
product: 259992
product: 259968
reactant: 259944
reversible: false
notes: GENE_ASSOCIATION: b3974 PROTEIN_ASSOCIATION: CoaA SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 2.7.1.33
reactant: 259956
product: 259980

260064
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260052
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units: 017602
value: 4.6E-4

260040
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value: 0.0

260028
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units: 017602
value: 999999.0

260016
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units: 017602
value: 0.0

259992
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stoichiometry: 1.0
species: 478711

259968
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stoichiometry: 1.0
species: 465152

465152
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_4__Phosphopantothenate_C9H15NO8P

259944
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species: 469232

259956
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species: 485930

485930
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M__R__Pantothenate_C9H16NO5

259980
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species: 467132

492330
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Xylulose_C5H10O5

474352
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Fe2_Fe

476991
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_D_Glucarate_C6H8O8

529406
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product: 218460
product: 218448
name: R_mannitol_transport_via_PEPPyr_PTS__periplasm_
reactant: 218436
reactant: 218424
reversible: false
kinetic law: 218473
notes: GENE_ASSOCIATION: ( b3599 and b2415 and b2416 ) PROTEIN_ASSOCIATION: ( MtlA and PtsH and PtsI ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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218460
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stoichiometry: 1.0
species: 487010

218448
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stoichiometry: 1.0
species: 482571

482571
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Mannitol_1_phosphate_C6H13O9P

218436
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species: 482611

218424
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species: 485211

485211
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphoenolpyruvate_C3H2O6P

218535
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218523
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value: 0.0

218510
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218498
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value: 999999.0

218485
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507368
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product: 080218
reversible: false
reactant: 080182
product: 080194
reactant: 080170
name: R_cystathionine_b_lyase
product: 080206
notes: GENE_ASSOCIATION: ( b1622 or b3008 ) PROTEIN_ASSOCIATION: ( MalY ) or ( MetC ) SUBSYSTEM: S_Methionine_Metabolism PROTEIN_CLASS: 4.4.1.8
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initial concentration: NaN
initial amount: NaN
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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536846
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kinetic law: 267536
notes: GENE_ASSOCIATION: b4388 PROTEIN_ASSOCIATION: SerB SUBSYSTEM: S_Glycine_and_Serine_Metabolism PROTEIN_CLASS: 3.1.3.3
product: 267524
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product: 267511
reactant: 267499
reversible: false
reactant: 267487

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267584
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267572
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267560
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267511
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species: 486810

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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_Ethanolamine_C2H8NO

539606
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product: 290422
reactant: 290374
fast: false
reversible: false
reactant: 290386
kinetic law: 290434
product: 290398
product: 290410
notes: GENE_ASSOCIATION: b1238 PROTEIN_ASSOCIATION: Tdk SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 2.7.1.21
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290422
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species: 478711

290374
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species: 469232

290386
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species: 489470

489470
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Thymidine_C10H14N2O5

290494
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290482
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value: 0.0

290470
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290458
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290446
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290398
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initial concentration: NaN
initial amount: NaN
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name: M_dTMP_C10H13N2O8P

517467
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reversible: false
kinetic law: 137607
reactant: 137522
reactant: 137510
product: 137595
name: R_fatty_acid_CoA_ligase__hexadecanoate_transport_via_vectoral_Co_A_coupling_
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reactant: 137535
product: 137571
reactant: 137547
fast: false
product: 137559
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137667
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137655
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137643
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137631
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value: 999999.0

137619
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137522
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species: 470692

137510
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137595
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137583
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species: 485910

485910
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constant: false
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initial amount: NaN
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137535
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137571
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species: 478891

478891
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constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_Hexadecanoate__n_C160__C16H31O2

137559
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species: 468052

493850
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Chloride_Cl

511108
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product: 103358
reactant: 103346
product: 103382
fast: false
reversible: false
reactant: 103333
notes: GENE_ASSOCIATION: b0585 PROTEIN_ASSOCIATION: Fes SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
kinetic law: 103394
name: R_Enterochelin_Esterase__Fe_containing_
product: 103370

103358
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stoichiometry: 3.0
species: 461773

461773
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_3_dihydroxybenzoylserine_C10H10NO6

103346
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stoichiometry: 3.0
species: 478591

103382
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stoichiometry: 3.0
species: 478711

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stoichiometry: 1.0
species: 474771

474771
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Fe_enterobactin_C30H27FeN3O15

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value: 0.0

103430
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103418
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103406
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103370
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species: 474392

500609
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product: 035973
reversible: false
fast: false
reactant: 035900
notes: GENE_ASSOCIATION: ( b0185 and b2316 and b3255 and b3256 ) PROTEIN_ASSOCIATION: Acc SUBSYSTEM: S_Membrane_Lipid_Metabolism PROTEIN_CLASS: 6.4.1.2
product: 035949
product: 035937
product: 035961
reactant: 035925
kinetic law: 035985
reactant: 035913
name: R_acetyl_CoA_carboxylase

035973
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species: 485830

035900
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species: 466132

035949
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stoichiometry: 1.0
species: 467132

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species: 481311

481311
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Malonyl_CoA_C24H33N7O19P3S

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species: 478811

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036034
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036022
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035913
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species: 469232

502109
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kinetic law: 044898
product: 044873
reactant: 044861
notes: GENE_ASSOCIATION: b0110 PROTEIN_ASSOCIATION: AmpD SUBSYSTEM: S_Murein_Recycling PROTEIN_CLASS:
reactant: 044849
reversible: false
fast: false
product: 044885
name: R_N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_amidase

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044946
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044934
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044922
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044910
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044873
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stoichiometry: 1.0
species: 465712

465712
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_C15H25N4O8

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species: 478591

044849
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stoichiometry: 1.0
species: 468112

468112
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_C34H52N6O19

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species: 468192

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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid_C19H29N2O12

507908
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reactant: 083777
product: 083813
notes: GENE_ASSOCIATION: b4042 PROTEIN_ASSOCIATION: DgkA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.1.107
reactant: 083789
product: 083825
fast: false
name: R_diacylglycerol_kinase__n_C181_
product: 083801
kinetic law: 083837
reversible: false

083777
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species: 460613

460613
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_Diacyl_sn_glycerol__dioctadec_11_enoyl__n_C181__C39H72O5

083813
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species: 478711

083789
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stoichiometry: 1.0
species: 469232

083825
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species: 484871

484871
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate_C39H71O8P1

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species: 467132

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083886
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083861
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value: 999999.0

083849
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units: 017602
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518687
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name: R_flavodoxin_reductase__NADPH_
product: 147402
kinetic law: 147414
reactant: 147378
reactant: 147366
product: 147390
notes: GENE_ASSOCIATION: ( ( b0684 and b3924 ) or ( b2895 and b3924 ) ) PROTEIN_ASSOCIATION: ( FldA and Fpr ) or ( FldB and Fpr ) SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 1.18.1.2
reactant: 147354
fast: false
reversible: false

147402
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species: 483371

147474
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147462
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value: 0.0

147450
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147438
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units: 017602
value: 999999.0

147426
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units: 017602
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147378
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stoichiometry: 1.0
species: 483391

147366
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stoichiometry: 1.0
species: 478711

147390
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species: 474951

474951
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_flavodoxin__reduced__XH2

147354
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species: 474931

474931
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_flavodoxin__oxidized__X

509168
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kinetic law: 091504
product: 091492
reactant: 091479
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_deoxyinosine_transport_via_diffusion__extracellular_to_periplasm_

091565
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091552
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units: 017602
value: 0.0

091540
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091528
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units: 017602
value: 999999.0

091516
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units: 017602
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091492
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stoichiometry: 1.0
species: 472992

091479
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stoichiometry: 1.0
species: 472972

472972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Deoxyinosine_C10H12N4O4

505489
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reactant: 066079
reversible: false
name: R_Cobinamide_transport_via_ton_system__extermal_
product: 066091
notes: GENE_ASSOCIATION: ( b3966 and ( b1252 and b3005 and b3006 ) ) PROTEIN_ASSOCIATION: ( BtuB and Ton ) SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
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product: 066103
fast: false
reactant: 066067

066079
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species: 478751

066091
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species: 478711

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066163
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value: 0.0

066151
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066139
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066127
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066103
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species: 469712

469712
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Cobinamide_C48H72CoN11O8

066067
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species: 469692

469692
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cobinamide_C48H72CoN11O8

531806
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kinetic law: 235109
product: 235097
reactant: 235085
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:
fast: false
reversible: false
name: R_O16_antigen__x4__core_oligosaccharide_lipid_A_transport__periplasm_to_extracellular_

235169
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235145
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235133
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235121
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species: 483851

483851
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initial concentration: NaN
initial amount: NaN
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235085
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species: 483871

483871
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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512328
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kinetic law: 109427
product: 109415
reactant: 109403
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_Ascorbate_exchange

109487
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109475
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value: 0.0

109463
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109451
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units: 017602
value: 999999.0

109439
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109415
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stoichiometry: 1.0
species: 493590

493590
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boundary condition: true
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initial concentration: NaN
initial amount: NaN
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name: M_L_Ascorbate_C6H8O6

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species: 468912

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initial concentration: NaN
initial amount: NaN
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name: M_L_Ascorbate_C6H8O6

497889
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kinetic law: 019286
product: 019274
reactant: 019262
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_23cUMP_transport_via_diffusion__extracellular_to_periplasm_

019346
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019334
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value: 0.0

019322
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019310
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value: 999999.0

019298
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019274
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stoichiometry: 1.0
species: 461633

461633
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_2__3__Cyclic_UMP_C9H10N2O8P

019262
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species: 461613

461613
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_2__3__Cyclic_UMP_C9H10N2O8P

528267
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product: 209561
product: 209573
fast: false
product: 209549
reactant: 209536
notes: GENE_ASSOCIATION: b2521 PROTEIN_ASSOCIATION: SseA SUBSYSTEM: S_Cysteine_Metabolism PROTEIN_CLASS: 2.8.1.2
reversible: false
kinetic law: 209585
reactant: 209524
name: R_3_mercaptopyruvate_sulfurtransferase

209561
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species: 487010

209573
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209549
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209536
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species: 481951

481951
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_Mercaptopyruvate_C3H3O3S

209645
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209633
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value: 0.0

209621
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209609
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209597
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209524
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species: 471452

510128
type: Reaction
notes: GENE_ASSOCIATION: b2927 PROTEIN_ASSOCIATION: Epd SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
product: 097302
fast: false
product: 097314
reactant: 097278
kinetic law: 097338
product: 097326
reactant: 097290
name: R_Erythrose_4_phosphate_dehydrogenase
reversible: true
reactant: 097266

097302
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stoichiometry: 1.0
species: 465132

465132
type: Species
constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_4_Phospho_D_erythronate_C4H6O8P

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species: 478711

097278
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species: 478591

097398
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097386
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value: 1.78E-4

097374
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097362
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097350
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units: 017602
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097326
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stoichiometry: 1.0
species: 483351

097290
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species: 483331

097266
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species: 473932

473932
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_D_Erythrose_4_phosphate_C4H7O7P

516288
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kinetic law: 128606
product: 128594
reactant: 128582
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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reversible: true
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128654
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128630
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128618
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128594
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496729
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initial amount: NaN
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name: M_D_Ribose_C5H10O5

128582
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487350
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boundary condition: false
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initial amount: NaN
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initial concentration: NaN
initial amount: NaN
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508188
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reactant: 085482
product: 085518
fast: false
product: 085530
name: R_CDP_diacylglycerol_synthetase__n_C180_
reactant: 085506
reversible: false
kinetic law: 085542
reactant: 085494
notes: GENE_ASSOCIATION: b0175 PROTEIN_ASSOCIATION: CdsA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.7.41

085482
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species: 471312

471312
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_CTP_C9H12N3O14P3

085518
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species: 470012

470012
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

085530
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species: 486210

085506
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species: 484851

484851
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_dioctadecanoyl_sn_glycerol_3_phosphate_C39H75O8P1

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085591
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units: 017602
value: 0.0

085579
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085567
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value: 999999.0

085555
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units: 017602
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085494
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species: 478711

484951
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Pantetheine_4__phosphate_C11H21N2O7PS

489010
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

538865
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reactant: 281057
kinetic law: 281105
fast: false
product: 281093
product: 281081
product: 281069
notes: GENE_ASSOCIATION: b1584 PROTEIN_ASSOCIATION: SpeG SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS: 2.3.1.57
name: R_Spermidine_acetyltransferase__N8_
reactant: 281045
reversible: false

281057
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stoichiometry: 1.0
species: 488250

488250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Spermidine_C7H22N3

281166
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value: -0.108273

281154
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units: 017602
value: 0.0

281142
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281130
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units: 017602
value: 999999.0

281118
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units: 017602
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281093
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stoichiometry: 1.0
species: 483191

483191
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_N8_Acetylspermidine_C9H23N3O

281081
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species: 478711

281069
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stoichiometry: 1.0
species: 470692

281045
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stoichiometry: 1.0
species: 466132

511348
type: Reaction
kinetic law: 104685
product: 104672
reactant: 104660
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_2__3__Cyclic_AMP_exchange

104745
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value: -0.156938

104733
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units: 017602
value: 0.0

104721
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value: 0.0

104709
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units: 017602
value: 999999.0

104697
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units: 017602
value: 0.0

104672
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stoichiometry: 1.0
species: 492550

492550
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_2__3__Cyclic_AMP_C10H11N5O6P

104660
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stoichiometry: 1.0
species: 461493

461493
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_2__3__Cyclic_AMP_C10H11N5O6P

527287
type: Reaction
reactant: 200676
kinetic law: 200726
fast: false
reactant: 200688
reversible: false
name: R_Lysophospholipase_L2__acyltransferase__2_acyl_glycerophosphoethanolamine__n_C180_
notes: GENE_ASSOCIATION: b3825 PROTEIN_ASSOCIATION: PldB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS:
product: 200700
product: 200713

200676
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stoichiometry: 1.0
species: 462213

462213
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Acyl_sn_glycero_3_phosphoethanolamine__n_C180__C23H48NO7P1

200786
type: LocalParameter
value: -0.065197

200774
type: LocalParameter
units: 017602
value: 0.0

200762
type: LocalParameter
value: 0.0

200750
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units: 017602
value: 999999.0

200738
type: LocalParameter
units: 017602
value: 0.0

200688
type: SpeciesReference
stoichiometry: 1.0
species: 485370

485370
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerol__dioctadecanoyl__n_C180__C42H82O10P1

200700
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stoichiometry: 1.0
species: 468472

468472
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_acyl_phosphatidylglycerol__n_C180__C60H116O11P

200713
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stoichiometry: 1.0
species: 475591

540946
type: Reaction
reactant: 304251
product: 304288
name: R_Xanthosine_transport_via_proton_symport__periplasm_
notes: GENE_ASSOCIATION: b2406 PROTEIN_ASSOCIATION: XapB SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 304263
product: 304276
reversible: true
fast: false
kinetic law: 304300

304251
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stoichiometry: 1.0
species: 478751

304288
type: SpeciesReference
stoichiometry: 1.0
species: 492170

492170
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Xanthosine_C10H12N4O6

304263
type: SpeciesReference
stoichiometry: 1.0
species: 492210

492210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Xanthosine_C10H12N4O6

304276
type: SpeciesReference
stoichiometry: 1.0
species: 478711

304360
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value: 0.0

304348
type: LocalParameter
units: 017602
value: 0.0

304336
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value: 0.0

304324
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units: 017602
value: 999999.0

304312
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units: 017602
value: -999999.0

539125
type: Reaction
kinetic law: 284362
product: 284350
product: 284338
reactant: 284326
notes: GENE_ASSOCIATION: ( b3061 and b3062 ) PROTEIN_ASSOCIATION: TtdAB SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 4.2.1.32
fast: false
reversible: false
name: R_L___tartrate_dehydratase

284423
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value: 0.0

284411
type: LocalParameter
units: 017602
value: 0.0

284398
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value: 0.0

284386
type: LocalParameter
units: 017602
value: 999999.0

284374
type: LocalParameter
units: 017602
value: 0.0

284350
type: SpeciesReference
stoichiometry: 1.0
species: 484071

284338
type: SpeciesReference
stoichiometry: 1.0
species: 478591

284326
type: SpeciesReference
stoichiometry: 1.0
species: 488830

502349
type: Reaction
product: 046304
reversible: false
reactant: 046280
fast: false
kinetic law: 046328
notes: GENE_ASSOCIATION: b2937 PROTEIN_ASSOCIATION: SpeB SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS: 3.5.3.11
product: 046316
reactant: 046292
name: R_agmatinase

046304
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stoichiometry: 1.0
species: 486870

046280
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stoichiometry: 1.0
species: 467292

467292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Agmatine_C5H16N4

046388
type: LocalParameter
value: 0.0

046376
type: LocalParameter
units: 017602
value: 0.0

046364
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value: 0.0

046352
type: LocalParameter
units: 017602
value: 999999.0

046340
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units: 017602
value: 0.0

046316
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stoichiometry: 1.0
species: 491790

491790
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Urea_CH4N2O

046292
type: SpeciesReference
stoichiometry: 1.0
species: 478591

528606
type: Reaction
reactant: 213270
reactant: 213283
kinetic law: 213355
reversible: false
reactant: 213295
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
fast: false
product: 213343
product: 213331
product: 213307
name: R_L_methionine_S_oxide_transport_via_ABC_system__periplasm_
product: 213319

213270
type: SpeciesReference
stoichiometry: 1.0
species: 469232

213283
type: SpeciesReference
stoichiometry: 1.0
species: 478591

213416
type: LocalParameter
value: 0.0

213404
type: LocalParameter
units: 017602
value: 0.0

213392
type: LocalParameter
value: 0.0

213380
type: LocalParameter
units: 017602
value: 999999.0

213367
type: LocalParameter
units: 017602
value: 0.0

213295
type: SpeciesReference
stoichiometry: 1.0
species: 482211

213343
type: SpeciesReference
stoichiometry: 1.0
species: 485830

213331
type: SpeciesReference
stoichiometry: 1.0
species: 482171

482171
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Methionine_Sulfoxide_C5H11NO3S

213307
type: SpeciesReference
stoichiometry: 1.0
species: 467132

213319
type: SpeciesReference
stoichiometry: 1.0
species: 478711

508128
type: Reaction
reactant: 085103
kinetic law: 085139
notes: GENE_ASSOCIATION: b0175 PROTEIN_ASSOCIATION: CdsA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.7.41
reactant: 085091
reversible: false
reactant: 085079
product: 085115
name: R_CDP_diacylglycerol_synthetase__n_C141_
product: 085127
fast: false

085103
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stoichiometry: 1.0
species: 484731

484731
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate_C31H55O8P1

085199
type: LocalParameter
value: 0.0

085187
type: LocalParameter
units: 017602
value: 0.0

085175
type: LocalParameter
value: 0.0

085163
type: LocalParameter
units: 017602
value: 999999.0

085151
type: LocalParameter
units: 017602
value: 0.0

085091
type: SpeciesReference
stoichiometry: 1.0
species: 478711

085079
type: SpeciesReference
stoichiometry: 1.0
species: 471312

085115
type: SpeciesReference
stoichiometry: 1.0
species: 470032

470032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

085127
type: SpeciesReference
stoichiometry: 1.0
species: 486210

536426
type: Reaction
product: 264946
name: R_Proline_dehydrogenase
reversible: false
notes: GENE_ASSOCIATION: b1014 PROTEIN_ASSOCIATION: PutAec SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS: 1.5.99.8
kinetic law: 264983
reactant: 264934
fast: false
reactant: 264922
product: 264959
product: 264971

264946
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species: 461393

461393
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_Pyrroline_5_carboxylate_C5H6NO2

265046
type: LocalParameter
value: -0.003027

265033
type: LocalParameter
units: 017602
value: 0.0

265020
type: LocalParameter
value: 0.0

265007
type: LocalParameter
units: 017602
value: 0.0

264995
type: LocalParameter
units: 017602
value: 0.0

264934
type: SpeciesReference
stoichiometry: 1.0
species: 486510

486510
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Proline_C5H9NO2

264922
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stoichiometry: 1.0
species: 474271

474271
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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264959
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stoichiometry: 1.0
species: 474272

474272
type: Species
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

264971
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stoichiometry: 1.0
species: 478711

508868
type: Reaction
product: 089736
product: 089724
reactant: 089687
name: R_dihydrofolate_synthase
fast: false
product: 089712
reactant: 089699
kinetic law: 089760
notes: GENE_ASSOCIATION: b2315 PROTEIN_ASSOCIATION: FolCec SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 6.3.2.12
reversible: false
product: 089748
reactant: 089675

089736
type: SpeciesReference
stoichiometry: 1.0
species: 478711

089724
type: SpeciesReference
stoichiometry: 1.0
species: 472692

472692
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_7_8_Dihydrofolate_C19H19N7O6

089687
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stoichiometry: 1.0
species: 472832

472832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Dihydropteroate_C14H13N6O3

089712
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stoichiometry: 1.0
species: 467132

089699
type: SpeciesReference
stoichiometry: 1.0
species: 477311

089820
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value: 0.0

089808
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units: 017602
value: 5.34E-4

089796
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value: 0.0

089784
type: LocalParameter
units: 017602
value: 999999.0

089772
type: LocalParameter
units: 017602
value: 0.0

089748
type: SpeciesReference
stoichiometry: 1.0
species: 485830

089675
type: SpeciesReference
stoichiometry: 1.0
species: 469232

504349
type: Reaction
name: R_L_arginine_transport_out_via_proton_antiport__cytoplasm_to_periplasm_
fast: false
reactant: 058797
product: 058821
reversible: false
reactant: 058785
product: 058809
notes: GENE_ASSOCIATION: b2923 PROTEIN_ASSOCIATION: ArgO SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
kinetic law: 058833

058797
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stoichiometry: 1.0
species: 478751

058821
type: SpeciesReference
stoichiometry: 1.0
species: 468832

058785
type: SpeciesReference
stoichiometry: 1.0
species: 468792

468792
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Arginine_C6H15N4O2

058809
type: SpeciesReference
stoichiometry: 1.0
species: 478711

058893
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value: 0.0

058881
type: LocalParameter
units: 017602
value: 0.0

058869
type: LocalParameter
value: 0.0

058857
type: LocalParameter
units: 017602
value: 999999.0

058845
type: LocalParameter
units: 017602
value: 0.0

539085
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fast: false
reactant: 283844
product: 283868
notes: GENE_ASSOCIATION: ( ( b2422 and b2424 and b2423 and b3917 ) or ( b0763 and b0764 and b0765 ) or ( b2422 and b2425 and b2424 and b2423 ) ) PROTEIN_ASSOCIATION: ( CysA and CysU and CysW and Sbp ) or ( ModA and ModB and ModC ) or ( CysA and CysP and CysU and CysW ) SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
reactant: 283832
name: R_sulfate_transport_via_ABC_system__periplasm_
product: 283856
product: 283892
product: 283880
reactant: 283820
kinetic law: 283904
reversible: false

283844
type: SpeciesReference
stoichiometry: 1.0
species: 488230

488230
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Sulfate_O4S

283868
type: SpeciesReference
stoichiometry: 1.0
species: 478711

283832
type: SpeciesReference
stoichiometry: 1.0
species: 478591

283856
type: SpeciesReference
stoichiometry: 1.0
species: 467132

283892
type: SpeciesReference
stoichiometry: 1.0
species: 488190

488190
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Sulfate_O4S

283880
type: SpeciesReference
stoichiometry: 1.0
species: 485830

283820
type: SpeciesReference
stoichiometry: 1.0
species: 469232

283964
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283952
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units: 017602
value: 0.199876

283940
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value: 0.0

283928
type: LocalParameter
units: 017602
value: 999999.0

283916
type: LocalParameter
units: 017602
value: 0.0

512848
type: Reaction
kinetic law: 111942
product: 111930
reactant: 111918
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Cysteine_exchange

112002
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value: -0.047617

111990
type: LocalParameter
units: 017602
value: 0.0

111978
type: LocalParameter
value: 0.0

111966
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units: 017602
value: 999999.0

111954
type: LocalParameter
units: 017602
value: 0.0

111930
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stoichiometry: 1.0
species: 494110

494110
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Cysteine_C3H7NO2S

111918
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stoichiometry: 1.0
species: 471592

535326
type: Reaction
product: 258058
reactant: 258010
product: 258034
product: 258046
reversible: false
kinetic law: 258070
name: R_Phospholipase_A2__phosphatidylethanolamine__n_C141___periplasm_
fast: false
notes: GENE_ASSOCIATION: b3821 PROTEIN_ASSOCIATION: PldA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.4
reactant: 258022

258058
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species: 490490

258010
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species: 478631

258034
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stoichiometry: 1.0
species: 460953

460953
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_Acyl_sn_glycero_3_phosphoethanolamine__n_C141__C19H38NO7P1

258046
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stoichiometry: 1.0
species: 478751

258130
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258118
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units: 017602
value: 0.0

258106
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value: 0.0

258094
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units: 017602
value: 999999.0

258082
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units: 017602
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258022
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stoichiometry: 1.0
species: 485071

497410
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Uridine_C9H12N2O6

489250
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Thiamin_monophosphate_C12H16N4O4PS

504649
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kinetic law: 060769
product: 060757
reactant: 060745
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_arsenite_transport_via_diffusion__extracellular_to_periplasm_

060829
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value: 0.0

060817
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units: 017602
value: 0.0

060805
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060793
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units: 017602
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060781
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units: 017602
value: -999999.0

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species: 469072

469072
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_arsenite_AsO3

060745
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species: 469052

469052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_arsenite_AsO3

539885
type: Reaction
kinetic law: 293670
product: 293658
reactant: 293646
notes: GENE_ASSOCIATION: b2344 PROTEIN_ASSOCIATION: FadL SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_Tetradecenoate_transport_via_facilitated_irreversible_diffusion__extracellular_to_periplasm_

293730
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value: 0.0

293718
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units: 017602
value: 0.0

293706
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value: 0.0

293694
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units: 017602
value: 999999.0

293682
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units: 017602
value: 0.0

293658
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stoichiometry: 1.0
species: 490490

293646
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stoichiometry: 1.0
species: 490470

490470
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_tetradecenoate__n_C141__C14H25O2

479331
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Hydroxymethylbilane_C40H38N4O17

484931
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phenylacetaldehyde_C8H8O

539306
type: Reaction
name: R_tetrahydrodipicolinate_succinylase
fast: false
reactant: 286652
notes: GENE_ASSOCIATION: b0166 PROTEIN_ASSOCIATION: DapD SUBSYSTEM: S_Threonine_and_Lysine_Metabolism PROTEIN_CLASS: 2.3.1.117
reversible: false
reactant: 286628
reactant: 286640
product: 286676
product: 286664
kinetic law: 286688

286652
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stoichiometry: 1.0
species: 489130

489130
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_3_4_5_Tetrahydrodipicolinate_C7H7NO4

286628
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stoichiometry: 1.0
species: 478591

286640
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stoichiometry: 1.0
species: 488470

488470
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Succinyl_CoA_C25H35N7O19P3S

286676
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stoichiometry: 1.0
species: 488050

488050
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N_Succinyl_2_L_amino_6_oxoheptanedioate_C11H12NO8

286664
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stoichiometry: 1.0
species: 470692

286748
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286736
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units: 017602
value: 0.296304

286724
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value: 0.0

286712
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units: 017602
value: 999999.0

286700
type: LocalParameter
units: 017602
value: 0.0

534346
type: Reaction
notes: GENE_ASSOCIATION: ( b1278 or b0418 ) PROTEIN_ASSOCIATION: ( PgpB ) or ( PgpA ) SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.3.27
product: 251703
reactant: 251679
name: R_phosphatidylglycerol_phosphate_phosphatase__n_C181_
reactant: 251691
fast: false
product: 251715
kinetic law: 251727
reversible: false

251703
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stoichiometry: 1.0
species: 485391

485391
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerol__dioctadec_11_enoyl__n_C181__C42H78O10P1

251679
type: SpeciesReference
stoichiometry: 1.0
species: 478591

251691
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stoichiometry: 1.0
species: 485610

485610
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C181__C42H77O13P2

251715
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stoichiometry: 1.0
species: 485830

251788
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value: -0.040282

251776
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units: 017602
value: 0.0

251764
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value: 0.0

251752
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units: 017602
value: 999999.0

251740
type: LocalParameter
units: 017602
value: 0.0

503669
type: Reaction
reactant: 054454
product: 054478
fast: false
reactant: 054466
notes: GENE_ASSOCIATION: b1982 PROTEIN_ASSOCIATION: Amn SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.2.2.4
reversible: false
kinetic law: 054503
product: 054491
name: R_AMP_nucleosidase

054454
type: SpeciesReference
stoichiometry: 1.0
species: 468052

054478
type: SpeciesReference
stoichiometry: 1.0
species: 466912

054466
type: SpeciesReference
stoichiometry: 1.0
species: 478591

054564
type: LocalParameter
value: -0.009314

054552
type: LocalParameter
units: 017602
value: 0.0

054540
type: LocalParameter
value: 0.0

054528
type: LocalParameter
units: 017602
value: 999999.0

054515
type: LocalParameter
units: 017602
value: 0.0

054491
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stoichiometry: 1.0
species: 487170

487170
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_alpha_D_Ribose_5_phosphate_C5H9O8P

502729
type: Reaction
kinetic law: 048619
product: 048607
reactant: 048595
reactant: 048583
notes: GENE_ASSOCIATION: b1488 PROTEIN_ASSOCIATION: DdpX SUBSYSTEM: S_Murein_Recycling PROTEIN_CLASS: 3.4.17.14
fast: false
reversible: false
name: R_D_alanine_D_alanine_dipeptidase

048679
type: LocalParameter
value: -0.009314

048667
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units: 017602
value: 0.0

048655
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value: 0.0

048643
type: LocalParameter
units: 017602
value: 999999.0

048631
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units: 017602
value: 0.0

048607
type: SpeciesReference
stoichiometry: 2.0
species: 467552

048595
type: SpeciesReference
stoichiometry: 1.0
species: 478591

048583
type: SpeciesReference
stoichiometry: 1.0
species: 467672

540526
type: Reaction
name: R_uracil_transport_in_via_proton_symport__periplasm_
product: 300971
kinetic law: 300983
reactant: 300946
notes: GENE_ASSOCIATION: b2497 PROTEIN_ASSOCIATION: UraA SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
fast: false
reversible: false
reactant: 300934
product: 300959

300971
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stoichiometry: 1.0
species: 491690

491690
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Uracil_C4H4N2O2

301043
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value: 0.0

301031
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units: 017602
value: 0.0

301019
type: LocalParameter
value: 0.0

301007
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units: 017602
value: 999999.0

300995
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units: 017602
value: 0.0

300946
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stoichiometry: 1.0
species: 491730

491730
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Uracil_C4H4N2O2

300934
type: SpeciesReference
stoichiometry: 1.0
species: 478751

300959
type: SpeciesReference
stoichiometry: 1.0
species: 478711

512108
type: Reaction
kinetic law: 108364
product: 108352
reactant: 108340
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Alanine_exchange

108424
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value: -0.012574

108412
type: LocalParameter
units: 017602
value: 0.0

108400
type: LocalParameter
value: 0.0

108388
type: LocalParameter
units: 017602
value: 999999.0

108376
type: LocalParameter
units: 017602
value: 0.0

108352
type: SpeciesReference
stoichiometry: 1.0
species: 493370

493370
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Alanine_C3H7NO2

108340
type: SpeciesReference
stoichiometry: 1.0
species: 467572

467572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Alanine_C3H7NO2

496249
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_methanesulfonate_CH3O3S

479131
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

496149
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Methionine_C5H10NO2S

474811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Fe_enterobactin_C30H27FeN3O15

523027
type: Reaction
reactant: 174248
reversible: false
notes: GENE_ASSOCIATION: b3447 PROTEIN_ASSOCIATION: Ggt SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
reactant: 174236
name: R_glutathione_hydralase__periplasmic_
kinetic law: 174284
product: 174272
fast: false
product: 174260

174248
type: SpeciesReference
stoichiometry: 1.0
species: 478631

174236
type: SpeciesReference
stoichiometry: 1.0
species: 478291

478291
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Reduced_glutathione_C10H16N3O6S

174344
type: LocalParameter
value: 0.0

174332
type: LocalParameter
units: 017602
value: 0.0

174320
type: LocalParameter
value: 0.0

174308
type: LocalParameter
units: 017602
value: 999999.0

174296
type: LocalParameter
units: 017602
value: 0.0

174272
type: SpeciesReference
stoichiometry: 1.0
species: 477351

477351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Glutamate_C5H8NO4

174260
type: SpeciesReference
stoichiometry: 1.0
species: 470152

484271
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_octadecenoate__n_C181__C18H33O2

498649
type: Reaction
product: 023545
notes: GENE_ASSOCIATION: b2836 PROTEIN_ASSOCIATION: Aas SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.3.1.40
reactant: 023508
kinetic law: 023569
product: 023533
reversible: false
fast: false
reactant: 023521
reactant: 023496
name: R_2_acyl_glycerophospho_glycerol_acyltransferase__n_C141_
product: 023557

023545
type: SpeciesReference
stoichiometry: 1.0
species: 485271

485271
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerol__ditetradec_7_enoyl__n_C141__C34H62O10P1

023508
type: SpeciesReference
stoichiometry: 1.0
species: 469232

023629
type: LocalParameter
value: -0.027941

023617
type: LocalParameter
units: 017602
value: 0.0

023605
type: LocalParameter
value: 0.0

023593
type: LocalParameter
units: 017602
value: 999999.0

023581
type: LocalParameter
units: 017602
value: 0.0

023533
type: SpeciesReference
stoichiometry: 1.0
species: 468052

023521
type: SpeciesReference
stoichiometry: 1.0
species: 490450

490450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tetradecenoate__n_C141__C14H25O2

023496
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stoichiometry: 1.0
species: 462373

023557
type: SpeciesReference
stoichiometry: 1.0
species: 486210

483671
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Nitrite_NO2

524247
type: Reaction
reactant: 181692
reversible: false
reactant: 181704
notes: GENE_ASSOCIATION: b2514 PROTEIN_ASSOCIATION: HisS SUBSYSTEM: S_tRNA_Charging PROTEIN_CLASS: 6.1.1.21
fast: false
name: R_Histidyl_tRNA_synthetase
reactant: 181716
product: 181740
product: 181752
kinetic law: 181764
product: 181728

181692
type: SpeciesReference
stoichiometry: 1.0
species: 469232

181704
type: SpeciesReference
stoichiometry: 1.0
species: 479151

479151
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Histidine_C6H9N3O2

181716
type: SpeciesReference
stoichiometry: 1.0
species: 489990

489990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tRNA_His__R

181740
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stoichiometry: 1.0
species: 479251

479251
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Histidyl_tRNA_His__C6H8N3OR

181752
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stoichiometry: 1.0
species: 486210

181825
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value: -0.105595

181812
type: LocalParameter
units: 017602
value: 0.0

181800
type: LocalParameter
value: 0.0

181788
type: LocalParameter
units: 017602
value: 999999.0

181776
type: LocalParameter
units: 017602
value: 0.0

181728
type: SpeciesReference
stoichiometry: 1.0
species: 468052

518927
type: Reaction
product: 149015
reactant: 148991
product: 149003
fast: false
reversible: true
name: R_Fructoselysine_phosphate_deglycase
kinetic law: 149027
notes: GENE_ASSOCIATION: b3371 PROTEIN_ASSOCIATION: FrlB SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
reactant: 148979

149015
type: SpeciesReference
stoichiometry: 1.0
species: 481031

481031
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Lysine_C6H15N2O2

148991
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stoichiometry: 1.0
species: 478591

149003
type: SpeciesReference
stoichiometry: 1.0
species: 475831

475831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glucose_6_phosphate_C6H11O9P

149087
type: LocalParameter
value: 0.0

149075
type: LocalParameter
units: 017602
value: 0.0

149063
type: LocalParameter
value: 0.0

149051
type: LocalParameter
units: 017602
value: 999999.0

149039
type: LocalParameter
units: 017602
value: -999999.0

148979
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stoichiometry: 1.0
species: 475251

475251
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_fructoselysine_Phosphate_C12H24N2O10P

464172
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

468332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

519167
type: Reaction
reversible: true
reactant: 150328
fast: false
notes: GENE_ASSOCIATION: b2801 PROTEIN_ASSOCIATION: FucP SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 150340
product: 150352
name: R_L_fucose_transport_via_proton_symport__periplasm_
product: 150364
kinetic law: 150376

150328
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stoichiometry: 1.0
species: 475371

475371
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Fucose_C6H12O5

150340
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stoichiometry: 1.0
species: 478751

150352
type: SpeciesReference
stoichiometry: 1.0
species: 475331

475331
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Fucose_C6H12O5

150364
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stoichiometry: 1.0
species: 478711

150437
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value: -0.002328

150424
type: LocalParameter
units: 017602
value: 0.0

150412
type: LocalParameter
value: 0.0

150400
type: LocalParameter
units: 017602
value: 0.0

150388
type: LocalParameter
units: 017602
value: 0.0

531606
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kinetic law: 233800
product: 233762
reversible: false
reactant: 233750
product: 233788
reactant: 233737
product: 233775
name: R_Nucleoside_triphosphate_pyrophosphorylase__datp_
notes: GENE_ASSOCIATION: ( b2781 or b1865 ) PROTEIN_ASSOCIATION: ( MazG ) or ( NtpA ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS:
fast: false

233860
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value: -0.009314

233848
type: LocalParameter
units: 017602
value: 0.0

233836
type: LocalParameter
value: 0.0

233824
type: LocalParameter
units: 017602
value: 999999.0

233812
type: LocalParameter
units: 017602
value: 0.0

233762
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stoichiometry: 1.0
species: 471892

471892
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dAMP_C10H12N5O6P

233750
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stoichiometry: 1.0
species: 478591

233788
type: SpeciesReference
stoichiometry: 1.0
species: 486210

233737
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stoichiometry: 1.0
species: 471972

471972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dATP_C10H12N5O12P3

233775
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stoichiometry: 1.0
species: 478711

491830
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Urea_CH4N2O

540545
type: Reaction
reversible: true
kinetic law: 301105
notes: GENE_ASSOCIATION: b1006 PROTEIN_ASSOCIATION: YcdG SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 301056
fast: false
product: 301093
name: R_uracil_transport_in_via_proton_symport__reversible__periplasm_
reactant: 301068
product: 301080

301167
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value: 0.0

301154
type: LocalParameter
units: 017602
value: 0.0

301142
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value: 0.0

301129
type: LocalParameter
units: 017602
value: 999999.0

301117
type: LocalParameter
units: 017602
value: -999999.0

301056
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stoichiometry: 1.0
species: 478751

301093
type: SpeciesReference
stoichiometry: 1.0
species: 491690

301068
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stoichiometry: 1.0
species: 491730

301080
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stoichiometry: 1.0
species: 478711

486310
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Phenylpropanoate_C9H9O2

533506
type: Reaction
fast: false
kinetic law: 246197
name: R_Phenethylamine_oxidase
reactant: 246136
reactant: 246149
product: 246161
product: 246173
reversible: false
notes: GENE_ASSOCIATION: b1386 PROTEIN_ASSOCIATION: TynA SUBSYSTEM: S_Nitrogen_Metabolism PROTEIN_CLASS: 1.4.3.6
product: 246185
reactant: 246124

246257
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value: -0.02538

246245
type: LocalParameter
units: 017602
value: 0.0

246233
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value: 0.0

246221
type: LocalParameter
units: 017602
value: 999999.0

246209
type: LocalParameter
units: 017602
value: 0.0

246136
type: SpeciesReference
stoichiometry: 1.0
species: 483991

483991
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_O2_O2

246149
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stoichiometry: 1.0
species: 485191

485191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phenethylamine_C8H12N

246161
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stoichiometry: 1.0
species: 478571

478571
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Hydrogen_peroxide_H2O2

246173
type: SpeciesReference
stoichiometry: 1.0
species: 483471

483471
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Ammonium_H4N

246185
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initial amount: NaN
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initial concentration: NaN
initial amount: NaN
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name: M_2_Acyl_sn_glycero_3_phosphoethanolamine__n_C161__C21H42NO7P1

516068
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kinetic law: 127545
product: 127533
reactant: 127521
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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reversible: true
name: R_Propionate_exchange

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species: 496529

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Propionate__n_C30__C3H5O2

127521
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boundary condition: false
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initial amount: NaN
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name: M_Propionate__n_C30__C3H5O2

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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Histidine_C6H9N3O2

537226
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name: R_purine_nucleoside_phosphorylase__Deoxyadenosine_
reactant: 269913
kinetic law: 269950
product: 269925
notes: GENE_ASSOCIATION: b4384 PROTEIN_ASSOCIATION: DeoD SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 2.4.2.1
reactant: 269901
fast: false
product: 269937
reversible: true

269913
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stoichiometry: 1.0
species: 485830

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269974
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269962
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species: 462933

462933
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Deoxy_D_ribose_1_phosphate_C5H9O7P

269901
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species: 471792

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Deoxyadenosine_C10H13N5O3

269937
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species: 466912

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constant: false
boundary condition: true
has only substance units: false
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initial amount: NaN
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name: M_2_alpha_D_Mannosyl__D_glycerate_C9H15O9

497549
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Zinc_Zn

528847
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kinetic law: 215175
product: 215163
reactant: 215151
reactant: 215139
notes: GENE_ASSOCIATION: b0118 PROTEIN_ASSOCIATION: AcnB SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 4.2.1.99
fast: false
reversible: false
name: R_2_methylisocitrate_dehydratase

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215187
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215163
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stoichiometry: 1.0
species: 482331

482331
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_methylisocitrate_C7H7O7

215151
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species: 478591

215139
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species: 463133

463133
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: M_cis_2_Methylaconitate_C7H5O6

467452
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_2_Oxoglutarate_C5H4O5

468132
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_C34H52N6O19

501549
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kinetic law: 041463
product: 041451
reactant: 041439
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_Acetate_transport_via_diffusion__extracellular_to_periplasm_

041523
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value: 0.0

041511
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units: 017602
value: -6.69682

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value: 0.0

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value: 999999.0

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stoichiometry: 1.0
species: 465972

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species: 465952

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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Acetate_C2H3O2

494730
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_ferric_2_3_dihydroxybenzoylserine_C10H10NO6Fe

477331
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Glutamate_C5H8NO4

539206
type: Reaction
notes: GENE_ASSOCIATION: b3790 PROTEIN_ASSOCIATION: WecD SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS:
reactant: 285418
reactant: 285405
reversible: false
product: 285442
kinetic law: 285466
product: 285430
product: 285454
name: R_dTDP_4_amino_4_6_dideoxy_D_glucose_acetyltransferase
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285418
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species: 473532

473532
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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285405
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stoichiometry: 1.0
species: 466132

285442
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473512
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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285515
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value: 0.0

285503
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285491
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species: 470692

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species: 478711

475571
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_sn_Glycero_3_phosphocholine_C8H20NO6P

536246
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kinetic law: 263773
product: 263761
reactant: 263749
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_Phosphonate_transport_via_diffusion__extracellular_to_periplasm_

263835
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value: 0.0

263823
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units: 017602
value: 0.0

263811
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263798
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value: 999999.0

263786
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units: 017602
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263761
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stoichiometry: 1.0
species: 486370

486370
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphonate_HO3P

263749
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stoichiometry: 1.0
species: 486350

486350
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Phosphonate_HO3P

522567
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product: 171308
reactant: 171296
fast: false
product: 171332
name: R_phosphogluconate_dehydrogenase
kinetic law: 171344
reversible: false
notes: GENE_ASSOCIATION: b2029 PROTEIN_ASSOCIATION: Gnd SUBSYSTEM: S_Pentose_Phosphate_Pathway PROTEIN_CLASS: 1.1.1.44
reactant: 171284
product: 171320

171308
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species: 470632

171296
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species: 483371

171332
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species: 487510

487510
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Ribulose_5_phosphate_C5H9O8P

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value: 0.0

171392
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units: 017602
value: 5.060534

171380
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171368
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171356
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stoichiometry: 1.0
species: 465572

465572
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_6_Phospho_D_gluconate_C6H10O10P

171320
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species: 483391

527867
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kinetic law: 204768
product: 204756
reactant: 204744
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_L_Lyxose_transport_via_diffusion__extracellular_to_periplasm_

204828
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204816
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value: 0.0

204804
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204792
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204780
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stoichiometry: 1.0
species: 481151

481151
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Lyxose_C5H10O5

204744
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stoichiometry: 1.0
species: 481131

481131
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Lyxose_C5H10O5

517668
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product: 139576
product: 139600
name: R_L_fuculokinase
reactant: 139564
product: 139588
reversible: false
kinetic law: 139612
fast: false
reactant: 139552
notes: GENE_ASSOCIATION: b2803 PROTEIN_ASSOCIATION: FucK SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 2.7.1.51

139576
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stoichiometry: 1.0
species: 467132

139600
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species: 478711

139564
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stoichiometry: 1.0
species: 474331

474331
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_fuculose_C6H12O5

139588
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stoichiometry: 1.0
species: 474312

474312
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Fuculose_1_phosphate_C6H11O8P

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value: 0.025031

139660
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units: 017602
value: 0.0

139648
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139636
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139624
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139552
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stoichiometry: 1.0
species: 469232

463412
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Phosphoglycolate_C2H2O6P

492690
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_3_4_Dihydroxyphenylacetaldehyde_C8H8O3

503369
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reactant: 052592
name: R_aldose_reductase__methylglyoxal_
reactant: 052617
fast: false
reactant: 052604
product: 052641
kinetic law: 052653
product: 052629
reversible: false
notes: GENE_ASSOCIATION: ( b3012 or b0207 or b1781 or b3001 ) PROTEIN_ASSOCIATION: ( DkgA ) or ( DkgB ) or ( YeaE ) or ( YghZ ) SUBSYSTEM: S_Methylglyoxal_Metabolism PROTEIN_CLASS:

052592
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species: 478711

052617
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species: 483391

052604
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species: 482791

482791
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Methylglyoxal_C3H4O2

052641
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stoichiometry: 1.0
species: 483371

052713
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052701
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052689
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052677
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052665
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052629
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stoichiometry: 1.0
species: 466152

466152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetol_C3H6O2

515888
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kinetic law: 126677
product: 126665
reactant: 126653
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_octanoate__n_C80__exchange

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126725
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value: 0.0

126713
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126701
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value: 999999.0

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stoichiometry: 1.0
species: 496390

496390
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_octanoate__n_C80__C8H15O2

126653
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stoichiometry: 1.0
species: 484311

484311
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_octanoate__n_C80__C8H15O2

462953
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Deoxy_D_ribose_5_phosphate_C5H9O7P

510328
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kinetic law: 098665
reactant: 098617
fast: false
product: 098641
product: 098653
name: R_enoyl_acyl_carrier_protein_reductase__NADPH___n_C141_
reactant: 098629
reversible: false
notes: GENE_ASSOCIATION: b1288 PROTEIN_ASSOCIATION: FabI SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 1.3.1.10
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098713
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species: 489070

489070
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species: 488730

488730
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initial amount: NaN
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098605
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species: 478711

537466
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reversible: true
notes: GENE_ASSOCIATION: b3831 PROTEIN_ASSOCIATION: Udp SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 2.4.2.2
reactant: 271428
kinetic law: 271476
reactant: 271440
product: 271452
product: 271464
fast: false
name: R_pyrimidine_nucleoside_phosphorylase__uracil_

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species: 485830

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271524
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271512
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271500
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271488
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species: 491850

271452
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species: 487150

487150
type: Species
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_alpha_D_Ribose_1_phosphate_C5H9O8P

271464
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species: 491690

526267
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reactant: 194068
reactant: 194056
kinetic law: 194116
product: 194092
product: 194104
reactant: 194080
reversible: true
name: R_lacaldehyde_reductase__S_propane_1_2_diol_forming_
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notes: GENE_ASSOCIATION: b2799 PROTEIN_ASSOCIATION: FucO SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 1.1.1.77

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species: 480651

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species: 478711

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194152
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194140
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194128
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194092
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species: 460713

460713
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M__S__Propane_1_2_diol_C3H8O2

194104
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species: 483331

194080
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species: 483351

514288
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kinetic law: 118921
product: 118909
reactant: 118897
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Glyceraldehyde_exchange

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species: 495550

495550
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initial concentration: NaN
initial amount: NaN
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name: M_D_Glyceraldehyde_C3H6O3

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species: 477511

477511
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initial concentration: NaN
initial amount: NaN
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name: M_D_Glyceraldehyde_C3H6O3

529746
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notes: GENE_ASSOCIATION: b3941 PROTEIN_ASSOCIATION: MetF SUBSYSTEM: S_Folate_Metabolism PROTEIN_CLASS: 1.5.1.20
product: 220683
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name: R_5_10_methylenetetrahydrofolate_reductase__NADH_
kinetic law: 220695
product: 220671
reactant: 220647
reactant: 220635
reactant: 220659

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species: 483331

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species: 465472

465472
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
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species: 482391

482391
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_5_10_Methylenetetrahydrofolate_C20H21N7O6

220635
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species: 478711

220659
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stoichiometry: 1.0
species: 483351

465112
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_4_Phospho_L_aspartate_C4H6NO7P

519947
type: Reaction
reactant: 155209
kinetic law: 155245
reactant: 155197
name: R_D_galactose_1_phosphatase
fast: false
product: 155233
notes: GENE_ASSOCIATION: b1002 PROTEIN_ASSOCIATION: Agp SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.1.3.10
reversible: false
product: 155221

155209
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stoichiometry: 1.0
species: 478631

155305
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value: 0.0

155293
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units: 017602
value: 0.0

155281
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value: 0.0

155269
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units: 017602
value: 999999.0

155257
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units: 017602
value: 0.0

155197
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stoichiometry: 1.0
species: 475951

475951
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_alpha_D_Galactose_1_phosphate_C6H11O9P

155233
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stoichiometry: 1.0
species: 485870

485870
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphate_HO4P

155221
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species: 476051

476051
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Galactose_C6H12O6

518227
type: Reaction
reversible: false
kinetic law: 144149
reactant: 144084
product: 144136
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
fast: false
product: 144096
name: R_Ferrichrome_reductase
product: 144109
product: 144122
reactant: 144072

144213
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value: -0.037372

144201
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units: 017602
value: 0.0

144188
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value: 0.0

144175
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value: 999999.0

144162
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units: 017602
value: 0.0

144084
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stoichiometry: 1.0
species: 487250

487250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Reduced_riboflavin_C17H22N4O6

144136
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stoichiometry: 1.0
species: 487390

144096
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stoichiometry: 2.0
species: 474352

144109
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stoichiometry: 2.0
species: 474711

474711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Ferrichrome_minus_Fe_III__C27H42N9O12

144122
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stoichiometry: 2.0
species: 478711

144072
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species: 474651

474651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Ferrichrome_C27H42FeN9O12

517767
type: Reaction
product: 140434
product: 140470
product: 140458
fast: false
reactant: 140410
reversible: false
reactant: 140385
product: 140422
product: 140446
notes: GENE_ASSOCIATION: b0935 PROTEIN_ASSOCIATION: SsuD SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
reactant: 140398
name: R_FMNH2_dependent_monooxygenase__methanesulfonate_
kinetic law: 140482

140434
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stoichiometry: 1.0
species: 474991

474991
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_FMN_C17H19N4O9P

140470
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stoichiometry: 1.0
species: 488134

140458
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stoichiometry: 1.0
species: 478591

140410
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stoichiometry: 1.0
species: 483951

140385
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stoichiometry: 1.0
species: 475011

475011
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Reduced_FMN_C17H21N4O9P

140422
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stoichiometry: 1.0
species: 474291

474291
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Formaldehyde_CH2O

140446
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stoichiometry: 1.0
species: 478711

140398
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stoichiometry: 1.0
species: 482731

482731
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_methanesulfonate_CH3O3S

140542
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value: 0.0

140530
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units: 017602
value: 0.0

140518
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value: 0.0

140506
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units: 017602
value: 999999.0

140494
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units: 017602
value: 0.0

481731
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Mannose_6_phosphate_C6H11O9P

528366
type: Reaction
kinetic law: 210628
product: 210616
reactant: 210604
reactant: 210592
notes: GENE_ASSOCIATION: ( b3182 or b2328 or b2134 ) PROTEIN_ASSOCIATION: ( DacB ) or ( MepA ) or ( PbpG ) SUBSYSTEM: S_Murein_Recycling PROTEIN_CLASS:
fast: false
reversible: false
name: R_murein_D_D_endopeptidase__murein4px4p___periplasm_

210690
type: LocalParameter
value: 0.0

210678
type: LocalParameter
units: 017602
value: 0.0

210666
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value: 0.0

210653
type: LocalParameter
units: 017602
value: 999999.0

210640
type: LocalParameter
units: 017602
value: 0.0

210616
type: SpeciesReference
stoichiometry: 1.0
species: 482891

482891
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

210604
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stoichiometry: 1.0
species: 482931

482931
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

210592
type: SpeciesReference
stoichiometry: 1.0
species: 478631

528147
type: Reaction
reactant: 208146
name: R_Mannose_6_phosphate_transport_via_phosphate_antiport__periplasm_
notes: GENE_ASSOCIATION: b3666 PROTEIN_ASSOCIATION: UhpT SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 208133
product: 208159
kinetic law: 208183
reversible: false
product: 208171
fast: false

208146
type: SpeciesReference
stoichiometry: 1.0
species: 481731

208133
type: SpeciesReference
stoichiometry: 2.0
species: 485830

208159
type: SpeciesReference
stoichiometry: 1.0
species: 481691

481691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Mannose_6_phosphate_C6H11O9P

208244
type: LocalParameter
value: 0.044706

208232
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units: 017602
value: 0.0

208220
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value: 0.0

208207
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units: 017602
value: 0.0

208195
type: LocalParameter
units: 017602
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208171
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stoichiometry: 2.0
species: 485870

460753
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M__S__Propane_1_2_diol_C3H8O2

492010
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Xanthine_C5H4N4O2

532906
type: Reaction
reactant: 242116
reversible: false
reactant: 242104
fast: false
product: 242128
kinetic law: 242152
name: R_Phosphatidate_phosphatase__n_C120_
notes: GENE_ASSOCIATION: b1278 PROTEIN_ASSOCIATION: PgpB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.3.4
product: 242140

242116
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stoichiometry: 1.0
species: 484651

484651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_didodecanoyl_sn_glycerol_3_phosphate_C27H51O8P1

242104
type: SpeciesReference
stoichiometry: 1.0
species: 478591

242128
type: SpeciesReference
stoichiometry: 1.0
species: 460373

242212
type: LocalParameter
value: -0.009314

242200
type: LocalParameter
units: 017602
value: 0.0

242188
type: LocalParameter
value: 0.0

242176
type: LocalParameter
units: 017602
value: 999999.0

242164
type: LocalParameter
units: 017602
value: 0.0

242140
type: SpeciesReference
stoichiometry: 1.0
species: 485830

519787
type: Reaction
kinetic law: 154147
product: 154135
reactant: 154123
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_

154207
type: LocalParameter
value: 0.0

154195
type: LocalParameter
units: 017602
value: 0.0

154183
type: LocalParameter
value: 0.0

154171
type: LocalParameter
units: 017602
value: 999999.0

154159
type: LocalParameter
units: 017602
value: -999999.0

154135
type: SpeciesReference
stoichiometry: 1.0
species: 475811

475811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Glycerophosphoserine_C6H13NO8P

154123
type: SpeciesReference
stoichiometry: 1.0
species: 475791

475791
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycerophosphoserine_C6H13NO8P

474871
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_ferroxamine_minus_Fe_3__C25H46N6O8

462473
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_2_Acyl_sn_glycero_3_phosphoglycerol__n_C161__C22H42O9P1

492090
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Xanthosine_5__phosphate_C10H11N4O9P

500169
type: Reaction
notes: GENE_ASSOCIATION: ( b2836 and b1094 ) PROTEIN_ASSOCIATION: ( Aas and AcpP ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 6.2.1.20
reactant: 033223
kinetic law: 033283
product: 033259
fast: false
product: 033247
reactant: 033211
reactant: 033235
name: R_acyl_acyl_carrier_protein_synthetase___n_C180_
product: 033271
reversible: false

033223
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stoichiometry: 1.0
species: 469232

033343
type: LocalParameter
value: -0.009314

033331
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units: 017602
value: 0.0

033319
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value: 0.0

033307
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units: 017602
value: 999999.0

033295
type: LocalParameter
units: 017602
value: 0.0

033259
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stoichiometry: 1.0
species: 484151

484151
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

033247
type: SpeciesReference
stoichiometry: 1.0
species: 468052

033211
type: SpeciesReference
stoichiometry: 1.0
species: 465632

033235
type: SpeciesReference
stoichiometry: 1.0
species: 484171

484171
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_octadecanoate__n_C180__C18H35O2

033271
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stoichiometry: 1.0
species: 486210

465172
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N___R__4_Phosphopantothenoyl__L_cysteine_C12H20N2O9PS

493270
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Adenosylcobalamin_C72H100CoN18O17P

501069
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kinetic law: 038673
product: 038660
reactant: 038648
notes: GENE_ASSOCIATION: ( b4311 or b0929 or b2215 ) PROTEIN_ASSOCIATION: ( NanC ) or ( OmpF ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
fast: false
reversible: true
name: R_N_acetylneuraminate_transport_via_diffusion__extracellular_to_periplasm_

038733
type: LocalParameter
value: 0.0

038721
type: LocalParameter
units: 017602
value: 0.0

038709
type: LocalParameter
value: 0.0

038697
type: LocalParameter
units: 017602
value: 999999.0

038685
type: LocalParameter
units: 017602
value: -999999.0

038660
type: SpeciesReference
stoichiometry: 1.0
species: 466672

466672
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_N_Acetylneuraminate_C11H18NO9

038648
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stoichiometry: 1.0
species: 466652

466652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_N_Acetylneuraminate_C11H18NO9

489870
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tRNA_Asn__C10H17O10PR2

464612
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Oxotetradecanoyl_CoA_C35H56N7O18P3S

540825
type: Reaction
reversible: false
name: R_Valine_pyruvate_aminotransferase
notes: GENE_ASSOCIATION: b3572 PROTEIN_ASSOCIATION: AvtA SUBSYSTEM: S_Alanine_and_Aspartate_Metabolism PROTEIN_CLASS: 2.6.1.66
product: 303256
kinetic law: 303281
reactant: 303232
product: 303269
fast: false
reactant: 303244

303256
type: SpeciesReference
stoichiometry: 1.0
species: 487010

303342
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value: 0.0

303330
type: LocalParameter
units: 017602
value: 0.0

303318
type: LocalParameter
value: 0.0

303305
type: LocalParameter
units: 017602
value: 999999.0

303293
type: LocalParameter
units: 017602
value: 0.0

303232
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stoichiometry: 1.0
species: 464212

303269
type: SpeciesReference
stoichiometry: 1.0
species: 491930

491930
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Valine_C5H11NO2

303244
type: SpeciesReference
stoichiometry: 1.0
species: 467612

488630
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_sulfoacetate_C2H2O5S

533906
type: Reaction
kinetic law: 248854
product: 248829
reactant: 248817
product: 248841
fast: false
notes: GENE_ASSOCIATION: b3385 PROTEIN_ASSOCIATION: Gph SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.1.3.18
name: R_Phosphoglycolate_phosphatase
reactant: 248805
reversible: false

248915
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value: 0.0

248903
type: LocalParameter
units: 017602
value: 0.0

248891
type: LocalParameter
value: 0.0

248879
type: LocalParameter
units: 017602
value: 999999.0

248867
type: LocalParameter
units: 017602
value: 0.0

248829
type: SpeciesReference
stoichiometry: 1.0
species: 477831

477831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Glycolate_C2H3O3

248817
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stoichiometry: 1.0
species: 478591

248841
type: SpeciesReference
stoichiometry: 1.0
species: 485830

248805
type: SpeciesReference
stoichiometry: 1.0
species: 463412

532866
type: Reaction
reversible: false
reactant: 241827
kinetic law: 241875
name: R_phenylacetate_CoA_ligase
reactant: 241803
product: 241839
product: 241851
reactant: 241815
product: 241863
notes: GENE_ASSOCIATION: b1398 PROTEIN_ASSOCIATION: PaaK SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 6.2.1.30
fast: false

241827
type: SpeciesReference
stoichiometry: 1.0
species: 484891

241935
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value: -0.363239

241923
type: LocalParameter
units: 017602
value: 0.0

241911
type: LocalParameter
value: 0.0

241899
type: LocalParameter
units: 017602
value: 999999.0

241887
type: LocalParameter
units: 017602
value: 0.0

241803
type: SpeciesReference
stoichiometry: 1.0
species: 469232

241839
type: SpeciesReference
stoichiometry: 1.0
species: 468052

241851
type: SpeciesReference
stoichiometry: 1.0
species: 485631

485631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phenylacetyl_CoA_C29H38N7O17P3S

241815
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stoichiometry: 1.0
species: 470692

241863
type: SpeciesReference
stoichiometry: 1.0
species: 486210

485290
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphatidylglycerol__ditetradec_7_enoyl__n_C141__C34H62O10P1

537006
type: Reaction
notes: GENE_ASSOCIATION: b2585 PROTEIN_ASSOCIATION: PssA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.8.8
fast: false
kinetic law: 268587
name: R_Phosphatidylserine_syntase__n_C181_
product: 268551
product: 268563
reactant: 268527
reactant: 268539
product: 268575
reversible: false

268647
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268635
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units: 017602
value: 0.0

268623
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268611
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units: 017602
value: 999999.0

268599
type: LocalParameter
units: 017602
value: 0.0

268551
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stoichiometry: 1.0
species: 470572

268563
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stoichiometry: 1.0
species: 478711

268527
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stoichiometry: 1.0
species: 469992

469992
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

268539
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stoichiometry: 1.0
species: 487830

268575
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stoichiometry: 1.0
species: 486730

486730
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

478511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_C5H9O8P2

490350
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Thiosulfate_O3S2

521247
type: Reaction
kinetic law: 163105
product: 163092
reactant: 163079
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_glucose_transport_via_diffusion__extracellular_to_periplasm_

163167
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value: 0.0

163155
type: LocalParameter
units: 017602
value: 11.0

163143
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value: 0.0

163131
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units: 017602
value: 999999.0

163118
type: LocalParameter
units: 017602
value: -999999.0

163092
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stoichiometry: 1.0
species: 476911

163079
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stoichiometry: 1.0
species: 476891

476891
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Glucose_C6H12O6

538226
type: Reaction
kinetic law: 276172
product: 276160
reactant: 276148
notes: GENE_ASSOCIATION: ( b3386 or b4301 ) PROTEIN_ASSOCIATION: ( Rpeec ) or ( SgcE ) SUBSYSTEM: S_Pentose_Phosphate_Pathway PROTEIN_CLASS: 5.1.3.1
fast: false
reversible: true
name: R_ribulose_5_phosphate_3_epimerase

276233
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value: 0.0

276221
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units: 017602
value: 2.757193

276209
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276196
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276184
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units: 017602
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species: 492230

492230
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
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276148
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stoichiometry: 1.0
species: 487510

538966
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kinetic law: 282523
name: R_Succintate_transport_via_proton_symport__3_H___periplasm_
reversible: false
notes: GENE_ASSOCIATION: ( b4123 or b4138 ) PROTEIN_ASSOCIATION: ( DcuB ) or ( DcuA ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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product: 282499
product: 282511
reactant: 282487
reactant: 282475

282584
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282572
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units: 017602
value: 0.0

282559
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282547
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units: 017602
value: 999999.0

282535
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units: 017602
value: 0.0

282499
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stoichiometry: 3.0
species: 478711

282511
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stoichiometry: 1.0
species: 488410

488410
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Succinate_C4H4O4

282487
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species: 488450

488450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Succinate_C4H4O4

282475
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stoichiometry: 3.0
species: 478751

468632
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

476191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Galactonate_C6H11O7

522467
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product: 170629
reactant: 170617
reversible: false
product: 170641
product: 170654
name: R_D_glycero_D_manno_heptose_7_phosphate_kinase
fast: false
reactant: 170605
kinetic law: 170667
notes: GENE_ASSOCIATION: b3052 PROTEIN_ASSOCIATION: RfaEec SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:

170629
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stoichiometry: 1.0
species: 467132

170617
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stoichiometry: 1.0
species: 477971

477971
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glycero_D_manno_heptose_7_phosphate_C7H13O10P

170641
type: SpeciesReference
stoichiometry: 1.0
species: 477931

170654
type: SpeciesReference
stoichiometry: 1.0
species: 478711

170605
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stoichiometry: 1.0
species: 469232

170728
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170715
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value: 0.0

170703
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170691
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units: 017602
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170679
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units: 017602
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527567
type: Reaction
kinetic law: 202493
name: R_Lysophospholipase_L2__2_acylglycerophosphoethanolamine__n_C180_
reversible: false
product: 202456
reactant: 202444
product: 202481
product: 202468
fast: false
reactant: 202432
notes: GENE_ASSOCIATION: b3825 PROTEIN_ASSOCIATION: PldB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5

202553
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value: -0.08103

202541
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units: 017602
value: 0.0

202529
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value: 0.0

202517
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units: 017602
value: 999999.0

202505
type: LocalParameter
units: 017602
value: 0.0

202456
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stoichiometry: 1.0
species: 475591

202444
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stoichiometry: 1.0
species: 478591

202481
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stoichiometry: 1.0
species: 484171

202468
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stoichiometry: 1.0
species: 478711

202432
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stoichiometry: 1.0
species: 462213

479391
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Homoserine_C4H9NO3

521087
type: Reaction
product: 162126
reactant: 162090
fast: false
product: 162138
kinetic law: 162151
name: R_glucosyltransferase_II__LPS_core_synthesis_
reactant: 162102
product: 162114
reversible: false
notes: GENE_ASSOCIATION: b3627 PROTEIN_ASSOCIATION: WaaO SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:

162126
type: SpeciesReference
stoichiometry: 1.0
species: 478711

162090
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stoichiometry: 1.0
species: 475891

475891
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

162138
type: SpeciesReference
stoichiometry: 1.0
species: 491210

491210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_UDP_C9H11N2O12P2

162212
type: LocalParameter
value: 0.0

162199
type: LocalParameter
units: 017602
value: 0.0

162187
type: LocalParameter
value: 0.0

162175
type: LocalParameter
units: 017602
value: 999999.0

162163
type: LocalParameter
units: 017602
value: 0.0

162102
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stoichiometry: 1.0
species: 491270

491270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_UDPglucose_C15H22N2O17P2

162114
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stoichiometry: 1.0
species: 476771

476771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

503269
type: Reaction
kinetic law: 052021
product: 052009
reactant: 051996
notes: GENE_ASSOCIATION: b4085 PROTEIN_ASSOCIATION: AlsE SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
fast: false
reversible: true
name: R_Allulose_6_phosphate_epimerase

052083
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value: 0.0

052071
type: LocalParameter
units: 017602
value: 0.0

052058
type: LocalParameter
value: 0.0

052046
type: LocalParameter
units: 017602
value: 999999.0

052033
type: LocalParameter
units: 017602
value: -999999.0

052009
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stoichiometry: 1.0
species: 474232

051996
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stoichiometry: 1.0
species: 467932

476451
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Glucosamine_C6H14NO5

490690
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphotyrosine_C9H10NO6P

497209
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Tyramine_C8H12NO

539586
type: Reaction
kinetic law: 290202
product: 290190
reactant: 290178
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_Trimethylamine_N_oxide_transport_via_diffusion__extracellular_to_periplasm_

290264
type: LocalParameter
value: 0.0

290251
type: LocalParameter
units: 017602
value: 0.0

290239
type: LocalParameter
value: 0.0

290227
type: LocalParameter
units: 017602
value: 999999.0

290214
type: LocalParameter
units: 017602
value: -999999.0

290190
type: SpeciesReference
stoichiometry: 1.0
species: 489630

489630
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Trimethylamine_N_oxide_C3H9NO

290178
type: SpeciesReference
stoichiometry: 1.0
species: 489610

489610
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Trimethylamine_N_oxide_C3H9NO

474451
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Fe_III_dicitrate_C12H10FeO14

510528
type: Reaction
reactant: 099950
kinetic law: 099998
name: R_enoyl_acyl_carrier_protein_reductase__NADPH___n_C40_
reactant: 099962
reversible: false
notes: GENE_ASSOCIATION: b1288 PROTEIN_ASSOCIATION: FabI SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 1.3.1.10
product: 099974
reactant: 099938
fast: false
product: 099986

099950
type: SpeciesReference
stoichiometry: 1.0
species: 478711

100058
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value: -0.003027

100046
type: LocalParameter
units: 017602
value: 0.0

100034
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value: 0.0

100022
type: LocalParameter
units: 017602
value: 999999.0

100010
type: LocalParameter
units: 017602
value: 0.0

099962
type: SpeciesReference
stoichiometry: 1.0
species: 483391

099974
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stoichiometry: 1.0
species: 469432

099938
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stoichiometry: 1.0
species: 469412

099986
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stoichiometry: 1.0
species: 483371

496769
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Sorbitol_C6H14O6

482771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_methanesulfonate_CH3O3S

540405
type: Reaction
product: 299901
reactant: 299877
reversible: true
reactant: 299865
kinetic law: 299913
fast: false
notes: GENE_ASSOCIATION: ( b0910 or b0171 ) PROTEIN_ASSOCIATION: ( Cmk ) or ( PyrHec ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 2.7.4.14
name: R_UMP_kinase
product: 299889

299901
type: SpeciesReference
stoichiometry: 1.0
species: 491210

299877
type: SpeciesReference
stoichiometry: 1.0
species: 491530

299865
type: SpeciesReference
stoichiometry: 1.0
species: 469232

299973
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value: 0.0

299961
type: LocalParameter
units: 017602
value: 0.301927

299949
type: LocalParameter
value: 0.0

299937
type: LocalParameter
units: 017602
value: 999999.0

299925
type: LocalParameter
units: 017602
value: -999999.0

299889
type: SpeciesReference
stoichiometry: 1.0
species: 467132

496009
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_KDO_2__lipid__A__C110H196N2O39P2

470372
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Chloride_Cl

518527
type: Reaction
reversible: false
product: 146242
kinetic law: 146278
fast: false
reactant: 146206
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
product: 146254
product: 146266
product: 146230
reactant: 146218
name: R_ferroxamine_reductase

146242
type: SpeciesReference
stoichiometry: 2.0
species: 474871

146338
type: LocalParameter
value: -0.037372

146326
type: LocalParameter
units: 017602
value: 0.0

146314
type: LocalParameter
value: 0.0

146302
type: LocalParameter
units: 017602
value: 999999.0

146290
type: LocalParameter
units: 017602
value: 0.0

146206
type: SpeciesReference
stoichiometry: 2.0
species: 474831

474831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_ferroxamine_C25H46FeN6O8

146254
type: SpeciesReference
stoichiometry: 2.0
species: 478711

146266
type: SpeciesReference
stoichiometry: 1.0
species: 487390

146230
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stoichiometry: 2.0
species: 474352

146218
type: SpeciesReference
stoichiometry: 1.0
species: 487250

476691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_GDP_4_oxo_L_fucose_C16H21N5O15P2

536106
type: Reaction
product: 262900
reactant: 262863
reversible: false
fast: false
product: 262888
name: R_protoporphyrinogen_oxidase__aerobic_
reactant: 262875
kinetic law: 262912
notes: GENE_ASSOCIATION: b3850 PROTEIN_ASSOCIATION: HemG SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 1.3.3.4

262900
type: SpeciesReference
stoichiometry: 1.0
species: 486230

486230
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Protoporphyrin_C34H32N4O4

262863
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stoichiometry: 1.5
species: 483951

262888
type: SpeciesReference
stoichiometry: 3.0
species: 478591

262875
type: SpeciesReference
stoichiometry: 1.0
species: 486250

486250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Protoporphyrinogen_IX_C34H38N4O4

262973
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value: -0.027941

262961
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units: 017602
value: 0.0

262949
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262937
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units: 017602
value: 999999.0

262924
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units: 017602
value: 0.0

461033
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_Acyl_sn_glycero_3_phosphoethanolamine__n_C181__C23H46NO7P1

533086
type: Reaction
kinetic law: 243238
name: R_Phosphatidate_phosphatase__periplasmic__n_C161_
product: 243226
fast: false
reactant: 243201
reversible: false
product: 243213
notes: GENE_ASSOCIATION: b1278 PROTEIN_ASSOCIATION: PgpB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.3.4
reactant: 243189

243298
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value: 0.0

243286
type: LocalParameter
units: 017602
value: 0.0

243274
type: LocalParameter
value: 0.0

243262
type: LocalParameter
units: 017602
value: 999999.0

243250
type: LocalParameter
units: 017602
value: 0.0

243226
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stoichiometry: 1.0
species: 485870

243201
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stoichiometry: 1.0
species: 484831

243213
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stoichiometry: 1.0
species: 460553

460553
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_2_Diacyl_sn_glycerol__dihexadec_9_enoyl__n_C161__C35H64O5

243189
type: SpeciesReference
stoichiometry: 1.0
species: 478631

529546
type: Reaction
notes: GENE_ASSOCIATION: ( ( b2422 and b2425 and b2424 and b2423 ) or ( b0763 and b0764 and b0765 ) or ( b2422 and b2424 and b2423 and b3917 ) ) PROTEIN_ASSOCIATION: ( CysA and CysP and CysU and CysW ) or ( ModA and ModB and ModC ) or ( CysA and CysU and CysW and Sbp ) SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
kinetic law: 219454
product: 219430
reactant: 219394
reversible: false
product: 219442
reactant: 219382
name: R_molybdate_transport_via_ABC_system__periplasm_
reactant: 219370
fast: false
product: 219418
product: 219406

219515
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value: 0.0

219503
type: LocalParameter
units: 017602
value: 0.002522

219490
type: LocalParameter
value: 0.0

219478
type: LocalParameter
units: 017602
value: 999999.0

219466
type: LocalParameter
units: 017602
value: 0.0

219430
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stoichiometry: 1.0
species: 482631

482631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Molybdate_MoO4

219394
type: SpeciesReference
stoichiometry: 1.0
species: 482671

482671
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Molybdate_MoO4

219442
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stoichiometry: 1.0
species: 485830

219382
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stoichiometry: 1.0
species: 478591

219370
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stoichiometry: 1.0
species: 469232

219418
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stoichiometry: 1.0
species: 478711

219406
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stoichiometry: 1.0
species: 467132

471212
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cytosine_C4H5N3O

461413
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_tetradec_7_enoyl_sn_glycerol_3_phosphate_C17H31O7P1

469892
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

472312
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

488590
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Sucrose_C12H22O11

517547
type: Reaction
name: R_FAD_reductase
reactant: 138538
fast: false
product: 138562
reactant: 138550
product: 138574
kinetic law: 138586
notes: GENE_ASSOCIATION: b3844 PROTEIN_ASSOCIATION: Fre SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
reversible: false
reactant: 138525

138538
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stoichiometry: 1.0
species: 478711

138562
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stoichiometry: 1.0
species: 474272

138550
type: SpeciesReference
stoichiometry: 1.0
species: 483351

138574
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stoichiometry: 1.0
species: 483331

138647
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138635
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units: 017602
value: 0.0

138623
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value: 0.0

138611
type: LocalParameter
units: 017602
value: 999999.0

138598
type: LocalParameter
units: 017602
value: 0.0

138525
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stoichiometry: 1.0
species: 474271

479611
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Hypoxanthine_C5H4N4O

500469
type: Reaction
notes: GENE_ASSOCIATION: b2223 PROTEIN_ASSOCIATION: AtoE SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
product: 035128
product: 035116
kinetic law: 035140
fast: false
name: R_acetoacetate_transport_via_proton_symport___periplasm_
reactant: 035092
reactant: 035104
reversible: true

035128
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stoichiometry: 1.0
species: 478711

035116
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stoichiometry: 1.0
species: 465992

465992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetoacetate_C4H5O3

035201
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value: 0.0

035189
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units: 017602
value: 0.0

035176
type: LocalParameter
value: 0.0

035164
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units: 017602
value: 999999.0

035152
type: LocalParameter
units: 017602
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035092
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stoichiometry: 1.0
species: 466032

035104
type: SpeciesReference
stoichiometry: 1.0
species: 478751

512508
type: Reaction
kinetic law: 110296
product: 110284
reactant: 110272
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Cadmium_exchange

110356
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value: 0.0

110344
type: LocalParameter
units: 017602
value: 0.0

110332
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value: 0.0

110320
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value: 999999.0

110308
type: LocalParameter
units: 017602
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110284
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stoichiometry: 1.0
species: 493770

110272
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stoichiometry: 1.0
species: 469832

469832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cadmium_Cd

469092
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_arsenate_AsO4

463113
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate_C6H8N3O7P2

495250
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boundary condition: true
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initial concentration: NaN
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498149
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506608
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470972
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074292
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074304
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518767
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147883
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147931
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147919
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520307
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reactant: 157219
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157328
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157316
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157303
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157291
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157279
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157231
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157243
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532186
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kinetic law: 237330
reactant: 237282
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notes: GENE_ASSOCIATION: b3187 PROTEIN_ASSOCIATION: IspB SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
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237318
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237390
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237378
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237366
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237354
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237342
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237282
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237306
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237294
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480171
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478131
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511028
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102961
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102949
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102937
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102925
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102913
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102889
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102877
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474092
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527467
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product: 201791
reversible: false
reactant: 201767
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201839
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472352
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201767
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462013
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201779
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462593
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533846
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248526
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248514
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248502
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248478
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248465
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502029
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notes: GENE_ASSOCIATION: b1131 PROTEIN_ASSOCIATION: PurB SUBSYSTEM: S_Purine_and_Pyrimidine_Biosynthesis PROTEIN_CLASS: 4.3.2.2
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044440
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044368
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044356
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472132
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532466
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product: 239115
product: 239103
product: 239091
reactant: 239067
kinetic law: 239152
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reactant: 239079

239055
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239140
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239127
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species: 483351

239043
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239115
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239103
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239091
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239067
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239189
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239176
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239164
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239079
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476711
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509928
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notes: GENE_ASSOCIATION: b1238 PROTEIN_ASSOCIATION: Tdk SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS:
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096072
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096084
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473752
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096144
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096060
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096048
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520267
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notes: GENE_ASSOCIATION: ( b2094 and b2093 and b2092 and b2415 and b2416 ) PROTEIN_ASSOCIATION: ( GatA and GatB and GatC and PtsH and PtsI ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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156999
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157011
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476291
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157023
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476251
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157097
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157085
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157059
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498389
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notes: GENE_ASSOCIATION: b2836 PROTEIN_ASSOCIATION: Aas SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.3.1.40
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021962
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021938
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462133
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021998
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021950
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485091
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022059
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022035
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504029
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notes: GENE_ASSOCIATION: s0001 PROTEIN_ASSOCIATION: SPONTANEOUS SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
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056868
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056856
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056844
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056820
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056796
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474411
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056772
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516708
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product: 130625
reactant: 130613
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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130686
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489550
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527307
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200870
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462253
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468492
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528966
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216039
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482811
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215962
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482831
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215949
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515328
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notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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value: 999999.0

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species: 496110

496110
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_D_Mannose_C6H12O6

123937
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species: 481791

481791
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Mannose_C6H12O6

509788
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reversible: false
product: 095292
reactant: 095268
name: R_DsbGglutathione_thiotransferase
fast: false
kinetic law: 095316
reactant: 095280
product: 095304
notes: GENE_ASSOCIATION: b0604 PROTEIN_ASSOCIATION: DsbG SUBSYSTEM: S_Unassigned PROTEIN_CLASS:

095292
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stoichiometry: 1.0
species: 473452

473452
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_periplasmic_disulfide_isomerasethiol_disulphide_oxidase__reduced__XH2

095268
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stoichiometry: 1.0
species: 473432

473432
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_periplasmic_disulfide_isomerasethiol_disulphide_oxidase__oxidized__X

095376
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units: 017602
value: 0.0

095352
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095328
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units: 017602
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095280
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species: 478291

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species: 478231

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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Oxidized_glutathione_C20H30N6O12S2

486050
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Propanal_C3H6O

528026
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kinetic law: 206606
product: 206594
reactant: 206582
notes: GENE_ASSOCIATION: b4036 PROTEIN_ASSOCIATION: LamB SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
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reversible: false
name: R_maltopentaoseMaltotriose_transport_via_diffusion__extracellular_to_periplasm__irreversible

206667
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value: 0.0

206655
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units: 017602
value: 0.0

206643
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value: 0.0

206630
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units: 017602
value: 0.0

206618
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units: 017602
value: 0.0

206594
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stoichiometry: 1.0
species: 481531

481531
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Maltopentaose_C30H52O26

206582
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stoichiometry: 1.0
species: 481511

481511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Maltopentaose_C30H52O26

476431
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Glucosamine_6_phosphate_C6H13NO8P

526807
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product: 197565
reactant: 197541
kinetic law: 197602
reactant: 197553
notes: GENE_ASSOCIATION: b0494 PROTEIN_ASSOCIATION: TesA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5
product: 197577
product: 197589
name: R_Lysophospholipase_L1__2_acylglycerophosphoethanolamine__n_C141___periplasm_
reversible: false
fast: false

197565
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species: 475631

475631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_sn_Glycero_3_phosphoethanolamine_C5H14NO6P

197541
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stoichiometry: 1.0
species: 460953

197664
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value: -0.062286

197652
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units: 017602
value: 0.0

197640
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value: 0.0

197627
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units: 017602
value: 999999.0

197614
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units: 017602
value: 0.0

197553
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stoichiometry: 1.0
species: 478631

197577
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stoichiometry: 1.0
species: 478751

197589
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stoichiometry: 1.0
species: 490490

506468
type: Reaction
kinetic law: 072733
product: 072721
reactant: 072709
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_CMP_transport_via_diffusion__extracellular_to_periplasm_

072793
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value: 0.0

072781
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units: 017602
value: 0.0

072769
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value: 0.0

072757
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units: 017602
value: 999999.0

072745
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units: 017602
value: -999999.0

072721
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stoichiometry: 1.0
species: 470612

470612
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_CMP_C9H12N3O8P

072709
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stoichiometry: 1.0
species: 470592

470592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_CMP_C9H12N3O8P

541026
type: Reaction
notes: GENE_ASSOCIATION: ( b3566 and b3567 and b3568 ) PROTEIN_ASSOCIATION: ( XylF and XylG and XylH ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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product: 305223
name: R_D_xylose_transport_via_ABC_system__periplasm_
reactant: 305151
reversible: false
product: 305199
product: 305187
reactant: 305175
kinetic law: 305235
product: 305211
reactant: 305163

305223
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stoichiometry: 1.0
species: 492270

492270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Xylose_C5H10O5

305151
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stoichiometry: 1.0
species: 469232

305199
type: SpeciesReference
stoichiometry: 1.0
species: 478711

305187
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stoichiometry: 1.0
species: 467132

305175
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stoichiometry: 1.0
species: 492310

492310
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Xylose_C5H10O5

305296
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value: -0.009314

305284
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units: 017602
value: 0.0

305271
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value: 0.0

305259
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units: 017602
value: 0.0

305247
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units: 017602
value: 0.0

305211
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stoichiometry: 1.0
species: 485830

305163
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stoichiometry: 1.0
species: 478591

514828
type: Reaction
kinetic law: 121543
product: 121531
reactant: 121519
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_Idonate_exchange

121603
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value: -0.03807

121591
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value: 0.0

121579
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121567
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units: 017602
value: 999999.0

121555
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units: 017602
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121531
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stoichiometry: 1.0
species: 495869

495869
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Idonate_C6H11O7

121519
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stoichiometry: 1.0
species: 479771

479771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Idonate_C6H11O7

540705
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fast: false
product: 302267
reactant: 302243
name: R_uridine_transport_in_via_proton_symport__reversible__periplasm_
reversible: true
product: 302279
reactant: 302255
kinetic law: 302291
notes: GENE_ASSOCIATION: b2406 PROTEIN_ASSOCIATION: XapB SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:

302267
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stoichiometry: 1.0
species: 478711

302243
type: SpeciesReference
stoichiometry: 1.0
species: 478751

302279
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stoichiometry: 1.0
species: 491850

302255
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stoichiometry: 1.0
species: 491890

491890
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Uridine_C9H12N2O6

302351
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value: 0.0

302339
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units: 017602
value: 0.0

302327
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value: 0.0

302315
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units: 017602
value: 999999.0

302303
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units: 017602
value: -999999.0

538328
type: Reaction
reactant: 276734
kinetic law: 276806
reactant: 276710
product: 276758
product: 276794
product: 276782
product: 276770
fast: false
name: R_Sulfate_adenyltransferase
notes: GENE_ASSOCIATION: ( b2751 and b2752 ) PROTEIN_ASSOCIATION: CysD SUBSYSTEM: S_Cysteine_Metabolism PROTEIN_CLASS:
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reversible: false
reactant: 276722

276734
type: SpeciesReference
stoichiometry: 1.0
species: 478591

276866
type: LocalParameter
value: 0.0

276854
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units: 017602
value: 0.196723

276842
type: LocalParameter
value: 0.0

276830
type: LocalParameter
units: 017602
value: 999999.0

276818
type: LocalParameter
units: 017602
value: 0.0

276710
type: SpeciesReference
stoichiometry: 1.0
species: 469232

276758
type: SpeciesReference
stoichiometry: 1.0
species: 468532

468532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

276794
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stoichiometry: 1.0
species: 486210

276782
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stoichiometry: 1.0
species: 485830

276770
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stoichiometry: 1.0
species: 476572

276746
type: SpeciesReference
stoichiometry: 1.0
species: 488190

276722
type: SpeciesReference
stoichiometry: 1.0
species: 478311

507408
type: Reaction
kinetic law: 080530
reactant: 080458
product: 080506
reactant: 080470
name: R_L_cysteine_export_via_ABC_system__cytoplasm_to_periplasm_
product: 080518
product: 080482
product: 080494
reversible: false
notes: GENE_ASSOCIATION: ( b0886 and b0887 ) PROTEIN_ASSOCIATION: ( CydC and CydD ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 080446
fast: false

080590
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080578
type: LocalParameter
units: 017602
value: 0.0

080566
type: LocalParameter
value: 0.0

080554
type: LocalParameter
units: 017602
value: 999999.0

080542
type: LocalParameter
units: 017602
value: 0.0

080458
type: SpeciesReference
stoichiometry: 1.0
species: 471632

471632
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Cysteine_C3H7NO2S

080506
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stoichiometry: 1.0
species: 485830

080470
type: SpeciesReference
stoichiometry: 1.0
species: 478591

080518
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stoichiometry: 1.0
species: 471672

080482
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stoichiometry: 1.0
species: 467132

080494
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stoichiometry: 1.0
species: 478711

080446
type: SpeciesReference
stoichiometry: 1.0
species: 469232

477491
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glyceraldehyde_C3H6O3

536406
type: Reaction
kinetic law: 264850
product: 264838
reactant: 264826
notes: GENE_ASSOCIATION: b2024 PROTEIN_ASSOCIATION: HisA SUBSYSTEM: S_Histidine_Metabolism PROTEIN_CLASS: 5.3.1.16
fast: false
reversible: true
name: R_1__5_phosphoribosyl__5__5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase

264910
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value: 0.0

264898
type: LocalParameter
units: 017602
value: 0.075669

264886
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value: 0.0

264874
type: LocalParameter
units: 017602
value: 999999.0

264862
type: LocalParameter
units: 017602
value: -999999.0

264838
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stoichiometry: 1.0
species: 486490

486490
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

264826
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stoichiometry: 1.0
species: 486470

486470
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

486090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Propanal_C3H6O

477611
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycerol_2_phosphate_C3H7O6P

519247
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kinetic law: 150824
product: 150812
reactant: 150799
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_Fumarate_transport_via_diffusion__extracellular_to_periplasm_

150885
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150873
type: LocalParameter
units: 017602
value: 0.0

150861
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value: 0.0

150849
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units: 017602
value: 999999.0

150836
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units: 017602
value: -999999.0

150812
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stoichiometry: 1.0
species: 475431

475431
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Fumarate_C4H2O4

150799
type: SpeciesReference
stoichiometry: 1.0
species: 475411

475411
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Fumarate_C4H2O4

540105
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fast: false
reversible: false
product: 296373
kinetic law: 296422
notes: GENE_ASSOCIATION: b0088 PROTEIN_ASSOCIATION: MurD SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 6.3.2.9
reactant: 296336
product: 296385
product: 296409
product: 296397
reactant: 296361
reactant: 296348
name: R_UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_synthetase

296373
type: SpeciesReference
stoichiometry: 1.0
species: 467132

296483
type: LocalParameter
value: 0.0

296471
type: LocalParameter
units: 017602
value: 0.022188

296458
type: LocalParameter
value: 0.0

296446
type: LocalParameter
units: 017602
value: 999999.0

296434
type: LocalParameter
units: 017602
value: 0.0

296336
type: SpeciesReference
stoichiometry: 1.0
species: 469232

296385
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stoichiometry: 1.0
species: 478711

296409
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stoichiometry: 1.0
species: 491030

296397
type: SpeciesReference
stoichiometry: 1.0
species: 485830

296361
type: SpeciesReference
stoichiometry: 1.0
species: 491010

491010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

296348
type: SpeciesReference
stoichiometry: 1.0
species: 477291

477291
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Glutamate_C5H8NO4

502809
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kinetic law: 049116
product: 049103
reactant: 049091
notes: GENE_ASSOCIATION: b1325 PROTEIN_ASSOCIATION: YcjG SUBSYSTEM: S_Murein_Recycling PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_alanyl_gamma_glutamate_epimerase

049176
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value: 0.0

049164
type: LocalParameter
units: 017602
value: 0.0

049152
type: LocalParameter
value: 0.0

049140
type: LocalParameter
units: 017602
value: 999999.0

049128
type: LocalParameter
units: 017602
value: -999999.0

049103
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stoichiometry: 1.0
species: 465792

465792
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_alanine_L_glutamate_C8H13N2O5

049091
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stoichiometry: 1.0
species: 465772

465772
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_alanine_D_glutamate_C8H13N2O5

461993
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_meso_2_6_Diaminoheptanedioate_C7H14N2O4

525747
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product: 190847
reversible: false
fast: false
reactant: 190811
reactant: 190787
product: 190835
reactant: 190799
name: R_beta_ketoacyl_ACP_synthase
kinetic law: 190859
product: 190823
notes: GENE_ASSOCIATION: ( b2323 or b1095 ) PROTEIN_ASSOCIATION: ( FabB ) or ( FabF ) SUBSYSTEM: S_Membrane_Lipid_Metabolism PROTEIN_CLASS: 2.3.1.41

190847
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species: 470632

190811
type: SpeciesReference
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species: 481171

190787
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stoichiometry: 1.0
species: 465912

465912
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetyl_ACP_C13H23N2O8PRS

190835
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stoichiometry: 1.0
species: 466872

466872
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetoacetyl_ACP_C15H25N2O9PRS

190799
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stoichiometry: 1.0
species: 478711

190920
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190908
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units: 017602
value: 0.284212

190896
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190883
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units: 017602
value: 999999.0

190871
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units: 017602
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190823
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stoichiometry: 1.0
species: 465632

497749
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kinetic law: 018545
product: 018533
reactant: 018521
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R__S__Propane_1_2_diol_transport_via_diffusion__extracellular_to_periplasm_

018605
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018593
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value: 0.0

018581
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018569
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units: 017602
value: 999999.0

018557
type: LocalParameter
units: 017602
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018533
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stoichiometry: 1.0
species: 460753

018521
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stoichiometry: 1.0
species: 460733

460733
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M__S__Propane_1_2_diol_C3H8O2

518327
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reversible: false
product: 144757
reactant: 144745
reactant: 144733
fast: false
notes: GENE_ASSOCIATION: ( b0150 and ( b1252 and b3005 and b3006 ) ) PROTEIN_ASSOCIATION: ( FhuA and Ton ) SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
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kinetic law: 144781
product: 144769

144757
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species: 478711

144745
type: SpeciesReference
stoichiometry: 1.0
species: 478751

144733
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stoichiometry: 1.0
species: 474671

474671
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Ferrichrome_C27H42FeN9O12

144842
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value: 0.0

144830
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units: 017602
value: 0.0

144818
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144805
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513768
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product: 116384
reactant: 116372
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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reversible: true
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533106
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reactant: 243322
reversible: false
fast: false
name: R_Phosphatidate_phosphatase__n_C180_
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initial amount: NaN
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initial concentration: NaN
initial amount: NaN
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540665
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302038
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302014
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526967
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kinetic law: 198667
reversible: false
reactant: 198607
notes: GENE_ASSOCIATION: b0494 PROTEIN_ASSOCIATION: TesA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5
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product: 198655
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198704
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198692
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198679
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472112
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534326
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notes: GENE_ASSOCIATION: ( b1278 or b0418 ) PROTEIN_ASSOCIATION: ( PgpB ) or ( PgpA ) SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.3.27
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reversible: false
reactant: 251558

251570
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_Phosphatidylglycerophosphate__dioctadecanoyl__n_C180__C42H81O13P2

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251558
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512788
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kinetic law: 111652
product: 111640
reactant: 111628
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
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reversible: true
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species: 494050

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initial concentration: NaN
initial amount: NaN
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name: M_Cu_Cu

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species: 471412

463832
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initial amount: NaN
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489290
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initial amount: NaN
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480011
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initial amount: NaN
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name: M_Indole_C8H7N

509268
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kinetic law: 092229
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name: R_2_3_diketo_5_methylthio_1_phosphopentane_degradation_reaction
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reactant: 092133
product: 092169

092157
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species: 483331

092289
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092277
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092265
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092253
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092241
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092205
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092181
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species: 475031

475031
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initial concentration: NaN
initial amount: NaN
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092145
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092217
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092193
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534606
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reactant: 253384
kinetic law: 253432
product: 253408
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notes: GENE_ASSOCIATION: ( b0576 or b0112 ) PROTEIN_ASSOCIATION: ( PheP ) or ( AroP ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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product: 253420
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253384
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species: 478751

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253480
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253468
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253456
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253444
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253408
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253396
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species: 485690

485690
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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253420
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name: M_L_Phenylalanine_C9H11NO2

525987
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product: 192314
fast: false
reversible: false
reactant: 192277
kinetic law: 192338
reactant: 192301
name: R_3_deoxy__D_manno_octulosonic__acid_8_phosphate_synthase
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notes: GENE_ASSOCIATION: b1215 PROTEIN_ASSOCIATION: KdsA SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS: 4.1.2.16
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192314
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species: 480431

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initial amount: NaN
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name: M_3_Deoxy_D_manno_octulosonate_8_phosphate_C8H12O11P

192277
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species: 468552

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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_D_Arabinose_5_phosphate_C5H9O8P

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192386
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192374
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192326
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192289
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509568
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product: 093948
reversible: false
name: R_Dihydroneopterin_monophosphate_dephosphorylase
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reactant: 093912
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093948
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species: 485830

093924
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093936
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472752
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093912
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species: 472792

094020
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094008
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value: 5.34E-4

093996
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093984
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093972
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539465
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reactant: 288466
product: 288478
name: R_L_threonine_efflux_transport_via_proton_antiport__periplasm_
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reversible: false
reactant: 288454
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notes: GENE_ASSOCIATION: ( b0813 or b3823 ) PROTEIN_ASSOCIATION: ( RhtA ) or ( RhtC ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:

288466
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288478
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288454
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288491
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species: 489330

489330
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initial amount: NaN
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505789
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product: 068117
name: R_CDP_Diacylglycerol_pyrophostatase__n_C161_
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product: 068130
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reactant: 068081
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notes: GENE_ASSOCIATION: b3918 PROTEIN_ASSOCIATION: Cdh SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.6.1.26
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068105
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068117
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068130
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484811
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068081
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535826
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notes: GENE_ASSOCIATION: ( b1377 or b0929 or b2215 or b0241 ) PROTEIN_ASSOCIATION: ( OmpN ) or ( OmpF ) or ( OmpC ) or ( PhoE ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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261206
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261141
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261128
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530986
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kinetic law: 229878
reversible: false
name: R_5__nucleotidase__dIMP___periplasm_
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product: 229853
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notes: GENE_ASSOCIATION: ( b0480 or b4055 ) PROTEIN_ASSOCIATION: ( UshA ) or ( AphA ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.1.3.5
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229853
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229841
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229865
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533646
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notes: GENE_ASSOCIATION: ( ( ( b0902 and b0903 ) and b2579 ) or ( b0902 and b0903 ) or ( b0902 and b3114 ) or ( b3951 and b3952 ) ) PROTEIN_ASSOCIATION: ( PflBec and YfiD ) or ( PflBec ) or ( TdcEec ) or ( PflDec ) SUBSYSTEM: S_Pyruvate_Metabolism PROTEIN_CLASS:
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247030
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247102
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488030
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520127
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156238
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476171
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513548
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product: 115320
reactant: 115308
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Ferrichrome_minus_Fe_III__exchange

115393
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value: 0.0

115381
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units: 017602
value: 0.0

115368
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value: 0.0

115356
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units: 017602
value: 999999.0

115344
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units: 017602
value: 0.0

115320
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stoichiometry: 1.0
species: 494810

494810
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Ferrichrome_minus_Fe_III__C27H42N9O12

115308
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species: 474731

474731
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Ferrichrome_minus_Fe_III__C27H42N9O12

500009
type: Reaction
kinetic law: 032200
product: 032188
reactant: 032176
notes: GENE_ASSOCIATION: ( b0241 or b1377 or b0929 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpN ) or ( OmpF ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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reversible: true
name: R_5_Dehydro_D_gluconate_transport_via_diffusion__extracellular_to_periplasm_

032260
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value: 0.0

032248
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units: 017602
value: 0.0

032236
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value: 0.0

032224
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units: 017602
value: 999999.0

032212
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units: 017602
value: -999999.0

032188
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stoichiometry: 1.0
species: 465352

032176
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stoichiometry: 1.0
species: 465332

465332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_5_Dehydro_D_gluconate_C6H9O7

507448
type: Reaction
kinetic law: 080889
product: 080877
reactant: 080865
notes: GENE_ASSOCIATION: ( b2578 or b1533 ) PROTEIN_ASSOCIATION: ( YfiK ) or ( EamA ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_L_cysteine_export_via_facilitated_transport

080950
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value: -0.009314

080938
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units: 017602
value: 0.0

080926
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value: 0.0

080913
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units: 017602
value: 999999.0

080901
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units: 017602
value: 0.0

080877
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stoichiometry: 1.0
species: 471672

080865
type: SpeciesReference
stoichiometry: 1.0
species: 471632

526747
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: b0494 PROTEIN_ASSOCIATION: TesA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5
reactant: 197150
product: 197174
product: 197162
kinetic law: 197198
product: 197186
fast: false
name: R_Lysophospholipase_L1__2_acylglycerophosphotidate__n_C181___periplasm_
reactant: 197138

197150
type: SpeciesReference
stoichiometry: 1.0
species: 478631

197174
type: SpeciesReference
stoichiometry: 1.0
species: 478751

197162
type: SpeciesReference
stoichiometry: 1.0
species: 477691

197259
type: LocalParameter
value: -0.040632

197247
type: LocalParameter
units: 017602
value: 0.0

197234
type: LocalParameter
value: 0.0

197222
type: LocalParameter
units: 017602
value: 999999.0

197210
type: LocalParameter
units: 017602
value: 0.0

197186
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stoichiometry: 1.0
species: 484271

197138
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stoichiometry: 1.0
species: 461333

461333
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_1_octadec_11_enoyl_sn_glycerol_3_phosphate_C21H39O7P1

525387
type: Reaction
product: 188618
reactant: 188594
fast: false
kinetic law: 188630
product: 188606
reactant: 188582
reversible: false
notes: GENE_ASSOCIATION: b0030 PROTEIN_ASSOCIATION: RihC SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.2.2.8
name: R_Inosine_hydrolase

188618
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stoichiometry: 1.0
species: 487330

188594
type: SpeciesReference
stoichiometry: 1.0
species: 480111

188690
type: LocalParameter
value: -0.040748

188678
type: LocalParameter
units: 017602
value: 0.0

188666
type: LocalParameter
value: 0.0

188654
type: LocalParameter
units: 017602
value: 999999.0

188642
type: LocalParameter
units: 017602
value: 0.0

188606
type: SpeciesReference
stoichiometry: 1.0
species: 479591

188582
type: SpeciesReference
stoichiometry: 1.0
species: 478591

514768
type: Reaction
kinetic law: 121250
product: 121237
reactant: 121224
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_Homoserine_exchange

121311
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value: 0.0

121298
type: LocalParameter
units: 017602
value: 0.0

121286
type: LocalParameter
value: 0.0

121274
type: LocalParameter
units: 017602
value: 999999.0

121262
type: LocalParameter
units: 017602
value: 0.0

121237
type: SpeciesReference
stoichiometry: 1.0
species: 495830

495830
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_L_Homoserine_C4H9NO3

121224
type: SpeciesReference
stoichiometry: 1.0
species: 479411

493950
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_coprogen_C35H52N6O13Fe

501969
type: Reaction
reversible: false
reactant: 043971
product: 043995
notes: GENE_ASSOCIATION: b3397 PROTEIN_ASSOCIATION: NudE SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.6.1.13
fast: false
reactant: 043983
product: 044019
name: R_ADPribose_diphosphatase
kinetic law: 044031
product: 044007

043971
type: SpeciesReference
stoichiometry: 1.0
species: 467212

467212
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_ADPribose_C15H21N5O14P2

043995
type: SpeciesReference
stoichiometry: 1.0
species: 468052

043983
type: SpeciesReference
stoichiometry: 1.0
species: 478591

044019
type: SpeciesReference
stoichiometry: 1.0
species: 487170

044092
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value: -0.037255

044080
type: LocalParameter
units: 017602
value: 0.0

044068
type: LocalParameter
value: 0.0

044056
type: LocalParameter
units: 017602
value: 999999.0

044043
type: LocalParameter
units: 017602
value: 0.0

044007
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stoichiometry: 2.0
species: 478711

508668
type: Reaction
product: 088349
reactant: 088312
notes: GENE_ASSOCIATION: ( b1200 and b1199 and b1198 and b2415 and b2416 ) PROTEIN_ASSOCIATION: ( DhaK and DhaL and DhaM and PtsH and PtsI ) SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS:
name: R_Dihydroxyacetone_phosphotransferase
reversible: false
product: 088337
kinetic law: 088362
reactant: 088325
fast: false

088349
type: SpeciesReference
stoichiometry: 1.0
species: 487010

088312
type: SpeciesReference
stoichiometry: 1.0
species: 472592

088337
type: SpeciesReference
stoichiometry: 1.0
species: 472652

088423
type: LocalParameter
value: 0.0

088410
type: LocalParameter
units: 017602
value: 0.0

088398
type: LocalParameter
value: 0.0

088386
type: LocalParameter
units: 017602
value: 999999.0

088374
type: LocalParameter
units: 017602
value: 0.0

088325
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stoichiometry: 1.0
species: 485211

467112
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Adenosylcobalamin_C72H100CoN18O17P

478191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Oxidized_glutathione_C20H30N6O12S2

511408
type: Reaction
kinetic law: 104974
product: 104962
reactant: 104950
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_2__3__Cyclic_UMP_exchange

105034
type: LocalParameter
value: -0.077654

105022
type: LocalParameter
units: 017602
value: 0.0

105010
type: LocalParameter
value: 0.0

104998
type: LocalParameter
units: 017602
value: 999999.0

104986
type: LocalParameter
units: 017602
value: 0.0

104962
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stoichiometry: 1.0
species: 492610

492610
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_2__3__Cyclic_UMP_C9H10N2O8P

104950
type: SpeciesReference
stoichiometry: 1.0
species: 461613

481851
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_2_alpha_D_Mannosyl__D_glycerate_C9H15O9

525547
type: Reaction
notes: GENE_ASSOCIATION: b0073 PROTEIN_ASSOCIATION: LeuB SUBSYSTEM: S_Valine__Leucine__and_Isoleucine_Metabolism PROTEIN_CLASS: 1.1.1.85
product: 189539
product: 189551
reversible: false
product: 189564
reactant: 189527
reactant: 189515
fast: false
name: R_3_isopropylmalate_dehydrogenase
kinetic law: 189576

189539
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stoichiometry: 1.0
species: 463613

463613
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Carboxy_4_methyl_2_oxopentanoate_C7H8O5

189551
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stoichiometry: 1.0
species: 478711

189564
type: SpeciesReference
stoichiometry: 1.0
species: 483351

189527
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stoichiometry: 1.0
species: 483331

189515
type: SpeciesReference
stoichiometry: 1.0
species: 463572

463572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Carboxy_2_hydroxy_4_methylpentanoate_C7H10O5

189637
type: LocalParameter
value: 0.0

189624
type: LocalParameter
units: 017602
value: 0.359817

189612
type: LocalParameter
value: 0.0

189600
type: LocalParameter
units: 017602
value: 999999.0

189588
type: LocalParameter
units: 017602
value: 0.0

534946
type: Reaction
reversible: false
product: 255508
name: R_Phospholipase_A1__phosphatidylethanolamine__n_C161___periplasm_
reactant: 255472
reactant: 255484
product: 255496
fast: false
product: 255520
notes: GENE_ASSOCIATION: b3821 PROTEIN_ASSOCIATION: PldA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.32
kinetic law: 255532

255508
type: SpeciesReference
stoichiometry: 1.0
species: 478751

255472
type: SpeciesReference
stoichiometry: 1.0
species: 478631

255484
type: SpeciesReference
stoichiometry: 1.0
species: 485130

485130
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_phosphatidylethanolamine__dihexadec_9enoyl__n_C161__C37H70N1O8P1

255496
type: SpeciesReference
stoichiometry: 1.0
species: 462193

255520
type: SpeciesReference
stoichiometry: 1.0
species: 478951

255592
type: LocalParameter
value: 0.0

255580
type: LocalParameter
units: 017602
value: 0.0

255568
type: LocalParameter
value: 0.0

255556
type: LocalParameter
units: 017602
value: 999999.0

255544
type: LocalParameter
units: 017602
value: 0.0

524087
type: Reaction
product: 180679
kinetic law: 180715
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 2.7.1.7
reversible: false
fast: false
name: R_hexokinase__D_mannoseATP_
reactant: 180655
product: 180691
reactant: 180667
product: 180703

180679
type: SpeciesReference
stoichiometry: 1.0
species: 467132

180775
type: LocalParameter
value: 0.0

180763
type: LocalParameter
units: 017602
value: 0.0

180751
type: LocalParameter
value: 0.0

180739
type: LocalParameter
units: 017602
value: 999999.0

180727
type: LocalParameter
units: 017602
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180655
type: SpeciesReference
stoichiometry: 1.0
species: 469232

180691
type: SpeciesReference
stoichiometry: 1.0
species: 478711

180667
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stoichiometry: 1.0
species: 481771

481771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Mannose_C6H12O6

180703
type: SpeciesReference
stoichiometry: 1.0
species: 481691

532126
type: Reaction
kinetic law: 237016
product: 237004
reactant: 236992
notes: GENE_ASSOCIATION: b2344 PROTEIN_ASSOCIATION: FadL SUBSYSTEM: S_Transport__Outer_Membrane PROTEIN_CLASS:
fast: false
reversible: false
name: R_Octadecanoate_transport_via_facilitated_irreversible_diffusion__extracellular_to_periplasm_

237076
type: LocalParameter
value: -0.025147

237064
type: LocalParameter
units: 017602
value: 0.0

237052
type: LocalParameter
value: 0.0

237040
type: LocalParameter
units: 017602
value: 999999.0

237028
type: LocalParameter
units: 017602
value: 0.0

237004
type: SpeciesReference
stoichiometry: 1.0
species: 484211

236992
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stoichiometry: 1.0
species: 484191

484191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_octadecanoate__n_C180__C18H35O2

495090
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_sn_Glycero_3_phospho_1_inositol_C9H18O11P

502089
type: Reaction
reversible: false
product: 044765
product: 044753
reactant: 044729
notes: GENE_ASSOCIATION: b0677 PROTEIN_ASSOCIATION: NagA SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.5.1.25
fast: false
name: R_N_acetylglucosamine_6_phosphate_deacetylase
kinetic law: 044777
reactant: 044741

044765
type: SpeciesReference
stoichiometry: 1.0
species: 476391

044753
type: SpeciesReference
stoichiometry: 1.0
species: 465932

044729
type: SpeciesReference
stoichiometry: 1.0
species: 466352

044837
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044825
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044813
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044801
type: LocalParameter
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value: 999999.0

044789
type: LocalParameter
units: 017602
value: 0.0

044741
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species: 478591

530766
type: Reaction
kinetic law: 228338
name: R_nitrate_transport_in_via_nitrite_antiport__periplasm_
notes: GENE_ASSOCIATION: ( b1223 or b1469 ) PROTEIN_ASSOCIATION: ( NarKec ) or ( NarU ) SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
fast: false
product: 228326
reactant: 228290
reactant: 228302
reversible: false
product: 228314

228398
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228386
type: LocalParameter
units: 017602
value: 0.0

228374
type: LocalParameter
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228362
type: LocalParameter
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value: 999999.0

228350
type: LocalParameter
units: 017602
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228326
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species: 483671

228290
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stoichiometry: 1.0
species: 483631

228302
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species: 483731

228314
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species: 483691

496429
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Oxamate_C2H2NO3

520627
type: Reaction
kinetic law: 159229
product: 159193
name: R_GDP_diphosphokinase
reactant: 159181
product: 159217
fast: false
notes: GENE_ASSOCIATION: ( b2784 or b3650 ) PROTEIN_ASSOCIATION: ( RelA ) or ( SpoT ) SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
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reactant: 159169
product: 159205

159289
type: LocalParameter
value: -0.009314

159277
type: LocalParameter
units: 017602
value: 0.0

159265
type: LocalParameter
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159253
type: LocalParameter
units: 017602
value: 999999.0

159241
type: LocalParameter
units: 017602
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159193
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stoichiometry: 1.0
species: 468052

159181
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stoichiometry: 1.0
species: 476572

159217
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stoichiometry: 1.0
species: 486170

486170
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constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 460333

159169
type: SpeciesReference
stoichiometry: 1.0
species: 469232

159205
type: SpeciesReference
stoichiometry: 1.0
species: 478711

533346
type: Reaction
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS:
kinetic law: 244950
fast: false
name: R_Pyridoxine_5_phosphate_phosphatase
product: 244926
reactant: 244914
product: 244938
reactant: 244902
reversible: false

245010
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244998
type: LocalParameter
units: 017602
value: 0.0

244986
type: LocalParameter
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244974
type: LocalParameter
units: 017602
value: 999999.0

244962
type: LocalParameter
units: 017602
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244926
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stoichiometry: 1.0
species: 485830

244914
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stoichiometry: 1.0
species: 485010

485010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyridoxine_5__phosphate_C8H10NO6P

244938
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stoichiometry: 1.0
species: 486990

486990
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyridoxine_C8H11NO3

244902
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stoichiometry: 1.0
species: 478591

465392
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5__deoxyribose_C5H10O4

502989
type: Reaction
kinetic law: 050211
product: 050199
reactant: 050187
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_L_alanine_transport_via_diffusion__extracellular_to_periplasm_

050274
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050261
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value: 0.0

050248
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050235
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050223
type: LocalParameter
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050199
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stoichiometry: 1.0
species: 467652

467652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Alanine_C3H7NO2

050187
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stoichiometry: 1.0
species: 467632

467632
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_L_Alanine_C3H7NO2

506569
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product: 074076
reactant: 074015
reactant: 074028
product: 074052
kinetic law: 074088
name: R_coprogen_Fe_III___reductase
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
fast: false
product: 074064
reversible: false
product: 074040

074076
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species: 487390

074015
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species: 470912

074028
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species: 487250

074052
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species: 474352

074148
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074136
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value: 0.0

074124
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074112
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074100
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074064
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species: 478711

074040
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species: 470972

487870
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constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_seryl_AMP_C13H19N6O9P

531506
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product: 233096
product: 233108
product: 233120
name: R_Nucleoside_triphosphate_pyrophosphorylase__ditp_
reactant: 233072
kinetic law: 233132
notes: GENE_ASSOCIATION: b2954 PROTEIN_ASSOCIATION: RdgB SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.6.1.19
reactant: 233084
fast: false
reversible: false

233096
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species: 472892

472892
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dIMP_C10H11N4O7P

233108
type: SpeciesReference
stoichiometry: 1.0
species: 478711

233120
type: SpeciesReference
stoichiometry: 1.0
species: 486210

233072
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stoichiometry: 1.0
species: 473012

473012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dITP_C10H11N4O13P3

233192
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233180
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units: 017602
value: 0.0

233168
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value: 0.0

233156
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units: 017602
value: 999999.0

233144
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units: 017602
value: 0.0

233084
type: SpeciesReference
stoichiometry: 1.0
species: 478591

521847
type: Reaction
reactant: 166871
product: 166907
name: R_Glycine_betaine_transport_via_proton_symport__periplasm_
kinetic law: 166919
fast: false
reversible: false
notes: GENE_ASSOCIATION: b1801 PROTEIN_ASSOCIATION: YeaV SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 166883
product: 166895

166871
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stoichiometry: 1.0
species: 477591

477591
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Glycine_betaine_C5H11NO2

166907
type: SpeciesReference
stoichiometry: 1.0
species: 478711

166979
type: LocalParameter
value: -0.003143

166967
type: LocalParameter
units: 017602
value: 0.0

166955
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value: 0.0

166943
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units: 017602
value: 999999.0

166931
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units: 017602
value: 0.0

166883
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stoichiometry: 1.0
species: 478751

166895
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stoichiometry: 1.0
species: 477551

487950
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Shikimate_5_phosphate_C7H8O8P

493930
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293

534406
type: Reaction
reactant: 252069
product: 252093
kinetic law: 252117
product: 252105
name: R_Phosphatidylglycerol_synthase__n_C140_
notes: GENE_ASSOCIATION: b1912 PROTEIN_ASSOCIATION: PgsA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.8.5
reactant: 252057
product: 252081
fast: false
reversible: false

252069
type: SpeciesReference
stoichiometry: 1.0
species: 477651

477651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Glycerol_3_phosphate_C3H7O6P

252093
type: SpeciesReference
stoichiometry: 1.0
species: 478711

252178
type: LocalParameter
value: 0.0

252166
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units: 017602
value: 0.0

252154
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value: 0.0

252142
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units: 017602
value: 999999.0

252129
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units: 017602
value: 0.0

252105
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stoichiometry: 1.0
species: 485451

485451
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Phosphatidylglycerophosphate__ditetradecanoyl__n_C140__C34H65O13P2

252057
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stoichiometry: 1.0
species: 470052

252081
type: SpeciesReference
stoichiometry: 1.0
species: 470572

480131
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Inosine_C10H12N4O5

508208
type: Reaction
fast: false
reversible: false
product: 085663
name: R_CDP_diacylglycerol_synthetase__n_C181_
reactant: 085639
reactant: 085615
kinetic law: 085675
reactant: 085627
notes: GENE_ASSOCIATION: b0175 PROTEIN_ASSOCIATION: CdsA SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.7.7.41
product: 085651

085663
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stoichiometry: 1.0
species: 486210

085639
type: SpeciesReference
stoichiometry: 1.0
species: 484871

085615
type: SpeciesReference
stoichiometry: 1.0
species: 471312

085736
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value: 0.0

085724
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units: 017602
value: 0.0

085712
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value: 0.0

085699
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units: 017602
value: 999999.0

085687
type: LocalParameter
units: 017602
value: 0.0

085627
type: SpeciesReference
stoichiometry: 1.0
species: 478711

085651
type: SpeciesReference
stoichiometry: 1.0
species: 469992

530047
type: Reaction
reactant: 222893
fast: false
product: 222917
name: R_NADPH_Quinone_Reductase__Ubiquinone_8_
reactant: 222881
reactant: 222905
product: 222929
kinetic law: 222942
reversible: false
notes: GENE_ASSOCIATION: b3028 PROTEIN_ASSOCIATION: MdaB SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS: 1.6.99.6

222893
type: SpeciesReference
stoichiometry: 1.0
species: 483391

222917
type: SpeciesReference
stoichiometry: 1.0
species: 483371

222881
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stoichiometry: 1.0
species: 478711

222905
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stoichiometry: 1.0
species: 487070

222929
type: SpeciesReference
stoichiometry: 1.0
species: 487090

223002
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222990
type: LocalParameter
units: 017602
value: 0.0

222978
type: LocalParameter
value: 0.0

222966
type: LocalParameter
units: 017602
value: 999999.0

222954
type: LocalParameter
units: 017602
value: 0.0

505589
type: Reaction
product: 066816
kinetic law: 066828
product: 066792
fast: false
reactant: 066780
notes: GENE_ASSOCIATION: ( b0521 or b0323 or b2874 ) PROTEIN_ASSOCIATION: ( ArcCec ) or ( YahI ) or ( YqeA ) SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 2.7.2.2
reactant: 066756
name: R_Carbamate_kinase
product: 066804
reversible: true
reactant: 066768

066816
type: SpeciesReference
stoichiometry: 2.0
species: 478711

066888
type: LocalParameter
value: 0.0

066876
type: LocalParameter
units: 017602
value: 0.500462

066864
type: LocalParameter
value: 0.0

066852
type: LocalParameter
units: 017602
value: 999999.0

066840
type: LocalParameter
units: 017602
value: -999999.0

066792
type: SpeciesReference
stoichiometry: 1.0
species: 467132

066780
type: SpeciesReference
stoichiometry: 1.0
species: 483431

066756
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stoichiometry: 1.0
species: 469232

066804
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stoichiometry: 1.0
species: 469792

469792
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Carbamoyl_phosphate_CH2NO5P

066768
type: SpeciesReference
stoichiometry: 1.0
species: 470632

476131
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_D_Galactonate_C6H11O7

511768
type: Reaction
kinetic law: 106712
product: 106700
reactant: 106688
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Acetaldehyde_exchange

106772
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value: -0.00943

106760
type: LocalParameter
units: 017602
value: 0.0

106748
type: LocalParameter
value: 0.0

106736
type: LocalParameter
units: 017602
value: 999999.0

106724
type: LocalParameter
units: 017602
value: 0.0

106700
type: SpeciesReference
stoichiometry: 1.0
species: 493030

493030
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Acetaldehyde_C2H4O

106688
type: SpeciesReference
stoichiometry: 1.0
species: 466072

466072
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Acetaldehyde_C2H4O

497469
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Xanthosine_5__phosphate_C10H11N4O9P

466472
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Acetyl_maltose_C14H24O12

527906
type: Reaction
product: 205107
notes: GENE_ASSOCIATION: ( b3603 or b2975 ) PROTEIN_ASSOCIATION: ( LldP ) or ( GlcA ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 205095
reversible: true
fast: false
product: 205119
kinetic law: 205131
name: R_L_lactate_reversible_transport_via_proton_symport__periplasm_
reactant: 205083

205107
type: SpeciesReference
stoichiometry: 1.0
species: 478711

205095
type: SpeciesReference
stoichiometry: 1.0
species: 480611

480611
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Lactate_C3H5O3

205119
type: SpeciesReference
stoichiometry: 1.0
species: 480571

205191
type: LocalParameter
value: 0.0

205179
type: LocalParameter
units: 017602
value: 0.0

205167
type: LocalParameter
value: 0.0

205155
type: LocalParameter
units: 017602
value: 999999.0

205143
type: LocalParameter
units: 017602
value: -999999.0

205083
type: SpeciesReference
stoichiometry: 1.0
species: 478751

540766
type: Reaction
product: 302907
product: 302931
product: 302895
reactant: 302883
product: 302919
notes: GENE_ASSOCIATION: ( b3454 and b3455 and b3457 and b3460 and b3456 ) PROTEIN_ASSOCIATION: ( LivF and LivG and LivH and LivJ and LivM ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
name: R_L_valine_transport_via_ABC_system__periplasm_
fast: false
reversible: false
reactant: 302871
kinetic law: 302943
reactant: 302859

302907
type: SpeciesReference
stoichiometry: 1.0
species: 478711

302931
type: SpeciesReference
stoichiometry: 1.0
species: 491930

302895
type: SpeciesReference
stoichiometry: 1.0
species: 467132

302883
type: SpeciesReference
stoichiometry: 1.0
species: 491970

491970
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_L_Valine_C5H11NO2

302919
type: SpeciesReference
stoichiometry: 1.0
species: 485830

302871
type: SpeciesReference
stoichiometry: 1.0
species: 478591

303003
type: LocalParameter
value: -0.006985

302991
type: LocalParameter
units: 017602
value: 0.0

302979
type: LocalParameter
value: 0.0

302967
type: LocalParameter
units: 017602
value: 999999.0

302955
type: LocalParameter
units: 017602
value: 0.0

302859
type: SpeciesReference
stoichiometry: 1.0
species: 469232

465412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_5_Methylthio_5_deoxy_D_ribose_1_phosphate_C6H11O7PS

482711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Menaquinone_8_C51H72O2

516668
type: Reaction
kinetic law: 130445
product: 130433
reactant: 130421
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Thymine_exchange

130505
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value: 0.0

130493
type: LocalParameter
units: 017602
value: 0.0

130481
type: LocalParameter
value: 0.0

130469
type: LocalParameter
units: 017602
value: 999999.0

130457
type: LocalParameter
units: 017602
value: 0.0

130433
type: SpeciesReference
stoichiometry: 1.0
species: 497009

497009
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Thymine_C5H6N2O2

130421
type: SpeciesReference
stoichiometry: 1.0
species: 489430

489430
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Thymine_C5H6N2O2

480551
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Lactate_C3H5O3

527547
type: Reaction
reactant: 202300
reversible: false
reactant: 202312
product: 202348
product: 202324
name: R_Lysophospholipase_L2__2_acylglycerophosphoethanolamine__n_C161_
fast: false
kinetic law: 202360
notes: GENE_ASSOCIATION: b3825 PROTEIN_ASSOCIATION: PldB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.1.5
product: 202336

202300
type: SpeciesReference
stoichiometry: 1.0
species: 462173

462173
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Acyl_sn_glycero_3_phosphoethanolamine__n_C161__C21H42NO7P1

202312
type: SpeciesReference
stoichiometry: 1.0
species: 478591

202348
type: SpeciesReference
stoichiometry: 1.0
species: 478911

478911
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Hexadecenoate__n_C161__C16H29O2

202324
type: SpeciesReference
stoichiometry: 1.0
species: 475591

202420
type: LocalParameter
value: -0.099658

202408
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units: 017602
value: 0.0

202396
type: LocalParameter
value: 0.0

202384
type: LocalParameter
units: 017602
value: 999999.0

202372
type: LocalParameter
units: 017602
value: 0.0

202336
type: SpeciesReference
stoichiometry: 1.0
species: 478711

507748
type: Reaction
product: 082794
product: 082782
kinetic law: 082806
name: R_deoxyadenosine_transport_in_via_proton_symport__periplasm_
reversible: false
fast: false
reactant: 082770
notes: GENE_ASSOCIATION: ( b2393 or b2964 ) PROTEIN_ASSOCIATION: ( NupCec ) or ( NupG ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 082757

082794
type: SpeciesReference
stoichiometry: 1.0
species: 478711

082782
type: SpeciesReference
stoichiometry: 1.0
species: 471792

082866
type: LocalParameter
value: 0.0

082854
type: LocalParameter
units: 017602
value: 0.0

082842
type: LocalParameter
value: 0.0

082830
type: LocalParameter
units: 017602
value: 999999.0

082818
type: LocalParameter
units: 017602
value: 0.0

082770
type: SpeciesReference
stoichiometry: 1.0
species: 478751

082757
type: SpeciesReference
stoichiometry: 1.0
species: 471832

471832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Deoxyadenosine_C10H13N5O3

489670
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

464692
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_3_Sulfino_L_alanine_C3H5NO4S

486930
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Pyridoxamine_C8H13N2O2

538166
type: Reaction
product: 275798
reactant: 275762
kinetic law: 275810
fast: false
product: 275786
notes: GENE_ASSOCIATION: ( ( b0684 and b4238 ) or ( b2895 and b4238 ) or ( b2895 and b3924 and b4238 and b4237 ) or ( b0684 and b3924 and b4238 and b4237 ) ) PROTEIN_ASSOCIATION: ( FldA and NrdD ) or ( FldB and NrdD ) or ( FldB and Fpr and NrdD and NrdG ) or ( FldA and Fpr and NrdD and NrdG ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS:
reversible: false
product: 275774
name: R_ribonucleoside_triphosphate_reductase__GTP___flavodoxin_
reactant: 275750

275798
type: SpeciesReference
stoichiometry: 1.0
species: 478591

275762
type: SpeciesReference
stoichiometry: 1.0
species: 478311

275870
type: LocalParameter
value: 0.003143

275858
type: LocalParameter
units: 017602
value: 0.0

275846
type: LocalParameter
value: 0.0

275834
type: LocalParameter
units: 017602
value: 0.0

275822
type: LocalParameter
units: 017602
value: 0.0

275786
type: SpeciesReference
stoichiometry: 1.0
species: 474931

275774
type: SpeciesReference
stoichiometry: 1.0
species: 472572

472572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dGTP_C10H12N5O13P3

275750
type: SpeciesReference
stoichiometry: 1.0
species: 474951

532026
type: Reaction
kinetic law: 236442
product: 236430
reactant: 236418
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_oxygen_transport_via_diffusion__extracellular_to_periplasm_

236502
type: LocalParameter
value: 0.0

236490
type: LocalParameter
units: 017602
value: 18.2

236478
type: LocalParameter
value: 0.0

236466
type: LocalParameter
units: 017602
value: 999999.0

236454
type: LocalParameter
units: 017602
value: -999999.0

236430
type: SpeciesReference
stoichiometry: 1.0
species: 483991

236418
type: SpeciesReference
stoichiometry: 1.0
species: 483971

483971
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_O2_O2

487630
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Sorbitol_C6H14O6

526567
type: Reaction
product: 195990
fast: false
notes: GENE_ASSOCIATION: b0914 PROTEIN_ASSOCIATION: MsbA SUBSYSTEM: S_Lipopolysaccharide_Biosynthesis__Recycling PROTEIN_CLASS:
product: 196002
reactant: 195954
reactant: 195978
product: 196014
reversible: false
kinetic law: 196038
product: 196026
name: R_lipid_A_transport_via_ABC_system__periplasm_
reactant: 195966

195990
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stoichiometry: 1.0
species: 467132

196002
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stoichiometry: 1.0
species: 478711

195954
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stoichiometry: 1.0
species: 469232

195978
type: SpeciesReference
stoichiometry: 1.0
species: 480831

480831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_KDO_2__lipid__A__C110H196N2O39P2

196014
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stoichiometry: 1.0
species: 485830

196098
type: LocalParameter
value: 0.0

196086
type: LocalParameter
units: 017602
value: 0.0

196074
type: LocalParameter
value: 0.0

196062
type: LocalParameter
units: 017602
value: 999999.0

196050
type: LocalParameter
units: 017602
value: 0.0

196026
type: SpeciesReference
stoichiometry: 1.0
species: 480931

480931
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_KDO_2__lipid__A__C110H196N2O39P2

195966
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stoichiometry: 1.0
species: 478591

508968
type: Reaction
reactant: 090340
product: 090352
notes: GENE_ASSOCIATION: b1062 PROTEIN_ASSOCIATION: PyrC SUBSYSTEM: S_Purine_and_Pyrimidine_Biosynthesis PROTEIN_CLASS: 3.5.2.3
name: R_dihydroorotase
reversible: true
fast: false
product: 090365
reactant: 090328
kinetic law: 090377

090340
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stoichiometry: 1.0
species: 478591

090352
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stoichiometry: 1.0
species: 469652

469652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N_Carbamoyl_L_aspartate_C5H6N2O5

090365
type: SpeciesReference
stoichiometry: 1.0
species: 478711

090328
type: SpeciesReference
stoichiometry: 1.0
species: 472772

472772
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
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value: 0.0

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units: 017602
value: -0.264204

090413
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090401
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units: 017602
value: 999999.0

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units: 017602
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519847
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reactant: 154486
notes: GENE_ASSOCIATION: b0243 PROTEIN_ASSOCIATION: ProA SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS: 1.2.1.41
reactant: 154462
product: 154510
fast: false
reversible: false
name: R_glutamate_5_semialdehyde_dehydrogenase
product: 154498
product: 154522
kinetic law: 154534
reactant: 154474

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stoichiometry: 1.0
species: 483391

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stoichiometry: 1.0
species: 477251

477251
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Glutamate_5_phosphate_C5H8NO7P

154510
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stoichiometry: 1.0
species: 483371

154498
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stoichiometry: 1.0
species: 477271

477271
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Glutamate_5_semialdehyde_C5H9NO3

154522
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stoichiometry: 1.0
species: 485830

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value: 0.0

154582
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units: 017602
value: 0.176594

154570
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value: 0.0

154558
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units: 017602
value: 999999.0

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units: 017602
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stoichiometry: 1.0
species: 478711

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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Maltotriose_C18H32O16

465652
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine_C18H30N5O9

525187
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product: 187441
product: 187429
name: R_L_isoleucine_transport_via_ABC_system__periplasm_
reactant: 187417
reactant: 187392
product: 187453
kinetic law: 187477
reversible: false
product: 187465
fast: false
reactant: 187404
notes: GENE_ASSOCIATION: ( b3454 and b3455 and b3457 and b3460 and b3456 ) PROTEIN_ASSOCIATION: ( LivF and LivG and LivH and LivJ and LivM ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:

187441
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stoichiometry: 1.0
species: 478711

187429
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stoichiometry: 1.0
species: 467132

187417
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species: 479871

187392
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stoichiometry: 1.0
species: 469232

187453
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stoichiometry: 1.0
species: 479831

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187525
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value: 0.0

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187501
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units: 017602
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units: 017602
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187465
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stoichiometry: 1.0
species: 485830

187404
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stoichiometry: 1.0
species: 478591

514588
type: Reaction
kinetic law: 120375
product: 120363
reactant: 120351
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_H2O_exchange

120435
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value: 0.0

120423
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units: 017602
value: 40.936193

120411
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value: 0.0

120399
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units: 017602
value: 999999.0

120387
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units: 017602
value: -999999.0

120363
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stoichiometry: 1.0
species: 495730

495730
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_H2O_H2O

120351
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stoichiometry: 1.0
species: 478611

478611
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_H2O_H2O

497449
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Xanthine_C5H4N4O2

498329
type: Reaction
fast: false
product: 021542
notes: GENE_ASSOCIATION: b2836 PROTEIN_ASSOCIATION: Aas SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 2.3.1.40
reactant: 021518
product: 021566
kinetic law: 021578
product: 021554
reactant: 021530
name: R_2_acyl_glycerophospho_ethanolamine_acyltransferase__n_C120_
reactant: 021506
reversible: false

021542
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stoichiometry: 1.0
species: 468052

021518
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stoichiometry: 1.0
species: 469232

021566
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stoichiometry: 1.0
species: 486210

021638
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value: -0.027941

021626
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units: 017602
value: 0.0

021614
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value: 0.0

021602
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units: 017602
value: 999999.0

021590
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units: 017602
value: 0.0

021554
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stoichiometry: 1.0
species: 485011

485011
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_phosphatidylethanolamine__didodecanoyl__n_C120__C29H58N1O8P1

021530
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stoichiometry: 1.0
species: 472352

021506
type: SpeciesReference
stoichiometry: 1.0
species: 462013

540285
type: Reaction
reversible: false
product: 298570
kinetic law: 298582
name: R_UDP_D_glucuronate_pyrophosphohydrolase__periplasm_
notes: GENE_ASSOCIATION: b0480 PROTEIN_ASSOCIATION: UshA SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.6.1.45
product: 298558
reactant: 298534
product: 298546
fast: false
reactant: 298522

298570
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stoichiometry: 1.0
species: 491570

491570
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_UMP_C9H11N2O9P

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value: 0.0

298631
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units: 017602
value: 0.0

298618
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value: 0.0

298606
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units: 017602
value: 999999.0

298594
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units: 017602
value: 0.0

298558
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stoichiometry: 2.0
species: 478751

298534
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stoichiometry: 1.0
species: 491450

298546
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stoichiometry: 1.0
species: 477071

477071
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Glucuronate_1_phosphate_C6H8O10P

298522
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stoichiometry: 1.0
species: 478631

535706
type: Reaction
product: 260462
reactant: 260450
product: 260474
kinetic law: 260486
fast: false
reversible: false
notes: GENE_ASSOCIATION: ( b4226 or b2502 or b2744 ) PROTEIN_ASSOCIATION: ( Ppa ) or ( Ppx ) or ( SurE ) SUBSYSTEM: S_Anaplerotic_Reactions PROTEIN_CLASS: 3.6.1.1
reactant: 260438
name: R_inorganic_diphosphatase

260462
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stoichiometry: 1.0
species: 478711

260450
type: SpeciesReference
stoichiometry: 1.0
species: 486210

260474
type: SpeciesReference
stoichiometry: 2.0
species: 485830

260546
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value: -0.009314

260534
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units: 017602
value: 0.0

260522
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value: 0.0

260510
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units: 017602
value: 999999.0

260498
type: LocalParameter
units: 017602
value: 0.0

260438
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stoichiometry: 1.0
species: 478591

480791
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Leucyl_tRNA_Leu__C6H12NOR

528666
type: Reaction
kinetic law: 213837
reactant: 213789
product: 213813
fast: false
product: 213825
notes: GENE_ASSOCIATION: ( ( b4219 and b2582 ) or ( b4219 and b3781 ) ) PROTEIN_ASSOCIATION: ( MsrA and TrxC ) or ( MsrA and TrxA ) SUBSYSTEM: S_Methionine_Metabolism PROTEIN_CLASS: 1.8.4.5
reversible: false
name: R_L_methionine_S_oxide_reductase
product: 213801
reactant: 213777

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value: -0.015833

213885
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units: 017602
value: 0.0

213873
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value: 0.0

213861
type: LocalParameter
units: 017602
value: 999999.0

213849
type: LocalParameter
units: 017602
value: 0.0

213789
type: SpeciesReference
stoichiometry: 1.0
species: 489750

213813
type: SpeciesReference
stoichiometry: 1.0
species: 482031

213825
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stoichiometry: 1.0
species: 489730

489730
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Oxidized_thioredoxin_X

213801
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stoichiometry: 1.0
species: 478591

213777
type: SpeciesReference
stoichiometry: 1.0
species: 482171

475491
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Glucose_1_phosphate_C6H11O9P

518027
type: Reaction
reversible: false
name: R_Fe_III_hydroxamate_reductase
product: 142670
reactant: 142634
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Inorganic_Ion_Transport_and_Metabolism PROTEIN_CLASS:
product: 142658
product: 142682
fast: false
kinetic law: 142694
product: 142646
reactant: 142622

142670
type: SpeciesReference
stoichiometry: 2.0
species: 478711

142634
type: SpeciesReference
stoichiometry: 1.0
species: 487250

142658
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stoichiometry: 2.0
species: 474591

474591
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Fe_III_hydoxamate__unloaded_C9H18O6N3

142682
type: SpeciesReference
stoichiometry: 1.0
species: 487390

142754
type: LocalParameter
value: -0.037372

142742
type: LocalParameter
units: 017602
value: 0.0

142730
type: LocalParameter
value: 0.0

142718
type: LocalParameter
units: 017602
value: 999999.0

142706
type: LocalParameter
units: 017602
value: 0.0

142646
type: SpeciesReference
stoichiometry: 2.0
species: 474352

142622
type: SpeciesReference
stoichiometry: 2.0
species: 474531

474531
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Fe_III_hydroxamate_C9H18O6N3Fe

505309
type: Reaction
kinetic law: 065049
product: 065037
reactant: 065025
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_butanesulfonate_transport_via_diffusion__extracellular_to_periplasm_

065109
type: LocalParameter
value: 0.0

065097
type: LocalParameter
units: 017602
value: 0.0

065085
type: LocalParameter
value: 0.0

065073
type: LocalParameter
units: 017602
value: 999999.0

065061
type: LocalParameter
units: 017602
value: -999999.0

065037
type: SpeciesReference
stoichiometry: 1.0
species: 469552

469552
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_butanesulfonate_C4H9O3S

065025
type: SpeciesReference
stoichiometry: 1.0
species: 469532

469532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_butanesulfonate_C4H9O3S

463392
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

476531
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_gamma_butyrobetaine_C7H15NO2

484611
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Oxamate_C2H2NO3

463333
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinol_C48H74O4

463233
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_octadec_11_enoyl_sn_glycerol_3_phosphate_C21H40O7P1

506049
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kinetic law: 069799
product: 069787
reactant: 069775
notes: GENE_ASSOCIATION: ( b2599 or b2600 ) PROTEIN_ASSOCIATION: ( PheA ) or ( TyrAec ) SUBSYSTEM: S_Tyrosine__Tryptophan__and_Phenylalanine_Metabolism PROTEIN_CLASS: 5.4.99.5
fast: false
reversible: false
name: R_chorismate_mutase

069861
type: LocalParameter
value: 0.0

069849
type: LocalParameter
units: 017602
value: 0.250812

069837
type: LocalParameter
value: 0.0

069825
type: LocalParameter
units: 017602
value: 999999.0

069812
type: LocalParameter
units: 017602
value: 0.0

069787
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stoichiometry: 1.0
species: 486190

069775
type: SpeciesReference
stoichiometry: 1.0
species: 470232

480211
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Isethionic_acid_C2H5O4S

469352
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Butanoyl_CoA_C25H38N7O17P3S

495949
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_KDO_2__lipid_IV_A__C84H148N2O37P2

473172
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Dimethyl_sulfoxide_C2H6OS

517527
type: Reaction
product: 138271
reversible: false
product: 138234
name: R_fatty_acid_CoA_ligase__hexanoate_transport_via_vectoral_Co_A_coupling_
reactant: 138210
kinetic law: 138283
product: 138246
product: 138259
reactant: 138222
fast: false
reactant: 138185
reactant: 138198
notes: GENE_ASSOCIATION: ( b1805 or b1701 ) PROTEIN_ASSOCIATION: ( FadD ) or ( FadK ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 6.2.1.3

138271
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stoichiometry: 1.0
species: 486210

138234
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stoichiometry: 1.0
species: 468052

138210
type: SpeciesReference
stoichiometry: 1.0
species: 478751

138343
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value: -0.009314

138331
type: LocalParameter
units: 017602
value: 0.0

138319
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value: 0.0

138307
type: LocalParameter
units: 017602
value: 999999.0

138295
type: LocalParameter
units: 017602
value: 0.0

138246
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stoichiometry: 1.0
species: 478711

138259
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stoichiometry: 1.0
species: 479651

479651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

138222
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stoichiometry: 1.0
species: 479571

479571
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Hexanoate__n_C60__C6H11O2

138185
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stoichiometry: 1.0
species: 469232

138198
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stoichiometry: 1.0
species: 470692

487570
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Sulfur_S

531786
type: Reaction
product: 235000
notes: GENE_ASSOCIATION: ( b4070 and b4071 and b4072 and b4073 ) PROTEIN_ASSOCIATION: NrfABCD SUBSYSTEM: S_Nitrogen_Metabolism PROTEIN_CLASS:
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reactant: 234940
reactant: 234964
reactant: 234952
product: 234988
reversible: false
kinetic law: 235013
fast: false
product: 234976

235000
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stoichiometry: 1.0
species: 483471

234940
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stoichiometry: 3.0
species: 482691

234964
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species: 483671

234952
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stoichiometry: 2.0
species: 478751

234988
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stoichiometry: 2.0
species: 478631

235073
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235061
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value: 0.0

235049
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235037
type: LocalParameter
units: 017602
value: 999999.0

235025
type: LocalParameter
units: 017602
value: 0.0

234976
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stoichiometry: 3.0
species: 482711

501009
type: Reaction
reversible: false
kinetic law: 038359
product: 038335
fast: false
product: 038347
name: R_N_acetylmuramate_transport_via_PEPPyr_PTS__periplasm_
reactant: 038323
notes: GENE_ASSOCIATION: ( b2417 and b2429 and b2415 and b2416 ) PROTEIN_ASSOCIATION: ( Crr and MurP and PtsH and PtsI ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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038419
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value: 0.0

038407
type: LocalParameter
units: 017602
value: 0.0

038395
type: LocalParameter
value: 0.0

038383
type: LocalParameter
units: 017602
value: 999999.0

038371
type: LocalParameter
units: 017602
value: 0.0

038335
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stoichiometry: 1.0
species: 466572

466572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N_acetylmuramate_6_phosphate_C11H17NO11P

038347
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stoichiometry: 1.0
species: 487010

038323
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stoichiometry: 1.0
species: 466612

466612
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_N_Acetylmuramate_C11H18NO8

038311
type: SpeciesReference
stoichiometry: 1.0
species: 485211

539146
type: Reaction
product: 284741
notes: GENE_ASSOCIATION: b0368 PROTEIN_ASSOCIATION: TauD SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 1.14.11.17
name: R_Taurine_dioxygenase
kinetic law: 284754
reversible: false
reactant: 284681
product: 284705
fast: false
product: 284729
product: 284693
product: 284717
reactant: 284669
reactant: 284657

284741
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stoichiometry: 1.0
species: 488410

284814
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284802
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units: 017602
value: 0.0

284790
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value: 0.0

284778
type: LocalParameter
units: 017602
value: 999999.0

284766
type: LocalParameter
units: 017602
value: 0.0

284681
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stoichiometry: 1.0
species: 488890

488890
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Taurine_C2H7NO3S

284705
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stoichiometry: 1.0
species: 470632

284729
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stoichiometry: 1.0
species: 488134

284693
type: SpeciesReference
stoichiometry: 1.0
species: 465852

465852
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Aminoacetaldehyde_C2H6NO

284717
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stoichiometry: 1.0
species: 478711

284669
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stoichiometry: 1.0
species: 483951

284657
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stoichiometry: 1.0
species: 467432

467432
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Oxoglutarate_C5H4O5

501849
type: Reaction
reactant: 043222
notes: GENE_ASSOCIATION: b2406 PROTEIN_ASSOCIATION: XapB SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 043210
fast: false
reversible: true
kinetic law: 043259
product: 043247
product: 043234
name: R_adenosine_transport_in_via_proton_symport__reversible__periplasm_

043222
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stoichiometry: 1.0
species: 478751

043210
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043247
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species: 478711

043234
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species: 466972

531446
type: Reaction
product: 232710
notes: GENE_ASSOCIATION: b0980 PROTEIN_ASSOCIATION: AppA SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.6.1.15
reversible: false
reactant: 232670
kinetic law: 232735
reactant: 232684
product: 232723
fast: false
name: R_nucleoside_triphosphatase__GTP___periplasm_
product: 232697

232710
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stoichiometry: 1.0
species: 478751

232670
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stoichiometry: 1.0
species: 478351

232795
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232783
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units: 017602
value: 0.0

232771
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value: 0.0

232759
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units: 017602
value: 999999.0

232747
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units: 017602
value: 0.0

232684
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stoichiometry: 1.0
species: 478631

232723
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232697
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stoichiometry: 1.0
species: 476611

476611
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_GDP_C10H12N5O11P2

460653
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M__R__Propane_1_2_diol_C3H8O2

480711
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Lactose_C12H22O11

538586
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notes: GENE_ASSOCIATION: b0893 PROTEIN_ASSOCIATION: SerS SUBSYSTEM: S_tRNA_Charging PROTEIN_CLASS: 6.1.1.11
reactant: 278392
reactant: 278368
kinetic law: 278442
product: 278429
product: 278416
reversible: false
reactant: 278380
fast: false
product: 278404
name: R_Seryl_tRNA_synthetase

278392
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stoichiometry: 1.0
species: 490150

490150
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_tRNA_Ser__R

278368
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species: 469232

278503
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278491
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units: 017602
value: 0.0

278478
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value: 0.0

278466
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units: 017602
value: 999999.0

278454
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278429
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species: 487890

487890
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_L_Seryl_tRNA_Ser__C3H6NO2R

278416
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species: 486210

278380
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species: 487830

278404
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species: 468052

514308
type: Reaction
kinetic law: 119019
product: 119007
reactant: 118995
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Glycine_betaine_exchange

119079
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value: 0.0

119067
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units: 017602
value: 0.0

119055
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value: 0.0

119043
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units: 017602
value: 999999.0

119031
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units: 017602
value: 0.0

119007
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stoichiometry: 1.0
species: 495569

495569
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycine_betaine_C5H11NO2

118995
type: SpeciesReference
stoichiometry: 1.0
species: 477571

477571
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Glycine_betaine_C5H11NO2

496910
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Taurine_C2H7NO3S

495890
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boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Indole_C8H7N

538906
type: Reaction
notes: GENE_ASSOCIATION: b1646 PROTEIN_ASSOCIATION: SodC SUBSYSTEM: S_Unassigned PROTEIN_CLASS: 1.15.1.1
reversible: false
fast: false
reactant: 281700
reactant: 281688
kinetic law: 281736
product: 281712
name: R_superoxide_dismutase
product: 281724

281700
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stoichiometry: 2.0
species: 484051

484051
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Superoxide_anion_O2

281688
type: SpeciesReference
stoichiometry: 2.0
species: 478751

281797
type: LocalParameter
value: 0.0

281784
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units: 017602
value: 0.0

281772
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value: 0.0

281760
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units: 017602
value: 999999.0

281748
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units: 017602
value: 0.0

281712
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stoichiometry: 1.0
species: 478571

281724
type: SpeciesReference
stoichiometry: 1.0
species: 483991

537546
type: Reaction
product: 271948
notes: GENE_ASSOCIATION: b3029 PROTEIN_ASSOCIATION: YgiN SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS:
fast: false
kinetic law: 271960
reactant: 271900
product: 271936
reactant: 271912
name: R_quinol_monooxygenase__menaquinol_8_
reversible: false
product: 271924

271948
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stoichiometry: 2.0
species: 484011

272020
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value: -0.004657

272008
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units: 017602
value: 0.0

271996
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value: 0.0

271984
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units: 017602
value: 999999.0

271972
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units: 017602
value: 0.0

271900
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stoichiometry: 1.0
species: 482691

271936
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stoichiometry: 1.0
species: 482711

271912
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species: 483951

271924
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stoichiometry: 2.0
species: 478711

479211
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_L_Histidinol_phosphate_C6H11N3O4P

538766
type: Reaction
kinetic law: 280333
product: 280321
reactant: 280309
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
fast: false
reversible: true
name: R_shikimate_transport_via_diffusion__extracellular_to_periplasm_

280393
type: LocalParameter
value: 0.0

280381
type: LocalParameter
units: 017602
value: 0.0

280369
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value: 0.0

280357
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units: 017602
value: 999999.0

280345
type: LocalParameter
units: 017602
value: -999999.0

280321
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stoichiometry: 1.0
species: 488010

488010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Shikimate_C7H9O5

280309
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stoichiometry: 1.0
species: 487990

487990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Shikimate_C7H9O5

515308
type: Reaction
kinetic law: 123864
product: 123852
reactant: 123840
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_D_Mannose_6_phosphate_exchange

123925
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value: 0.0

123912
type: LocalParameter
units: 017602
value: 0.0

123900
type: LocalParameter
value: 0.0

123888
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units: 017602
value: 999999.0

123876
type: LocalParameter
units: 017602
value: 0.0

123852
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stoichiometry: 1.0
species: 496109

496109
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Mannose_6_phosphate_C6H11O9P

123840
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stoichiometry: 1.0
species: 481711

481711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Mannose_6_phosphate_C6H11O9P

476951
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_D_Gluconate_C6H11O7

507548
type: Reaction
reversible: false
reactant: 081529
product: 081565
notes: GENE_ASSOCIATION: ( b2162 or b0651 or b0030 ) PROTEIN_ASSOCIATION: ( RihB ) or ( RihA ) or ( RihC ) SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 3.2.2.8
fast: false
reactant: 081541
name: R_Cytidine_hydrolase
product: 081553
kinetic law: 081577

081529
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stoichiometry: 1.0
species: 471732

471732
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Cytidine_C9H13N3O5

081565
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stoichiometry: 1.0
species: 487330

081541
type: SpeciesReference
stoichiometry: 1.0
species: 478591

081553
type: SpeciesReference
stoichiometry: 1.0
species: 471192

471192
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Cytosine_C4H5N3O

081637
type: LocalParameter
value: -0.040748

081625
type: LocalParameter
units: 017602
value: 0.0

081613
type: LocalParameter
value: 0.0

081601
type: LocalParameter
units: 017602
value: 999999.0

081589
type: LocalParameter
units: 017602
value: 0.0

485510
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C141__C34H61O13P2

539926
type: Reaction
kinetic law: 294285
reactant: 294248
reactant: 294236
product: 294273
name: R_phospho_L_tyrosine_phosphatase__periplasmic_
product: 294260
notes: GENE_ASSOCIATION: b4055 PROTEIN_ASSOCIATION: AphA SUBSYSTEM: S_Tyrosine__Tryptophan__and_Phenylalanine_Metabolism PROTEIN_CLASS:
reversible: false
fast: false

294345
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value: 0.0

294333
type: LocalParameter
units: 017602
value: 0.0

294321
type: LocalParameter
value: 0.0

294309
type: LocalParameter
units: 017602
value: 999999.0

294297
type: LocalParameter
units: 017602
value: 0.0

294248
type: SpeciesReference
stoichiometry: 1.0
species: 490690

294236
type: SpeciesReference
stoichiometry: 1.0
species: 478631

294273
type: SpeciesReference
stoichiometry: 1.0
species: 490650

294260
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stoichiometry: 1.0
species: 485870

496250
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Nitrous_oxide_N2O

493790
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cys_Gly_C5H10N2O3S

496430
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Phenylacetaldehyde_C8H8O

534006
type: Reaction
notes: GENE_ASSOCIATION: b0914 PROTEIN_ASSOCIATION: MsbA SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
reactant: 249469
name: R_phosphatidylglycerophosphate_transport_via_ABC_system__n_C141__periplasm_
product: 249517
product: 249493
reactant: 249457
product: 249505
product: 249481
kinetic law: 249529
reversible: false
fast: false
reactant: 249445

249469
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stoichiometry: 1.0
species: 485490

249517
type: SpeciesReference
stoichiometry: 1.0
species: 485510

249493
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stoichiometry: 1.0
species: 478711

249457
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stoichiometry: 1.0
species: 478591

249505
type: SpeciesReference
stoichiometry: 1.0
species: 485830

249481
type: SpeciesReference
stoichiometry: 1.0
species: 467132

249590
type: LocalParameter
value: -0.021655

249578
type: LocalParameter
units: 017602
value: 0.0

249565
type: LocalParameter
value: 0.0

249553
type: LocalParameter
units: 017602
value: 999999.0

249541
type: LocalParameter
units: 017602
value: 0.0

249445
type: SpeciesReference
stoichiometry: 1.0
species: 469232

512468
type: Reaction
kinetic law: 110104
product: 110092
reactant: 110080
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_Cobinamide_exchange

110164
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value: 0.0

110152
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units: 017602
value: 0.0

110140
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value: 0.0

110128
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units: 017602
value: 999999.0

110116
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units: 017602
value: 0.0

110092
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stoichiometry: 1.0
species: 493730

493730
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Cobinamide_C48H72CoN11O8

110080
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stoichiometry: 1.0
species: 469692

539786
type: Reaction
name: R_tryptophan_synthase__indole_
kinetic law: 292609
reactant: 292560
product: 292584
fast: false
product: 292596
notes: GENE_ASSOCIATION: ( b1260 and b1261 ) PROTEIN_ASSOCIATION: TrpA SUBSYSTEM: S_Tyrosine__Tryptophan__and_Phenylalanine_Metabolism PROTEIN_CLASS: 4.2.1.20
reactant: 292572
reversible: false

292670
type: LocalParameter
value: 0.0

292658
type: LocalParameter
units: 017602
value: 0.045398

292646
type: LocalParameter
value: 0.0

292634
type: LocalParameter
units: 017602
value: 999999.0

292621
type: LocalParameter
units: 017602
value: 0.0

292560
type: SpeciesReference
stoichiometry: 1.0
species: 479991

479991
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Indole_C8H7N

292584
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stoichiometry: 1.0
species: 478591

292596
type: SpeciesReference
stoichiometry: 1.0
species: 490250

292572
type: SpeciesReference
stoichiometry: 1.0
species: 487830

533026
type: Reaction
reactant: 242839
name: R_Phosphatidate_phosphatase__n_C160_
notes: GENE_ASSOCIATION: b1278 PROTEIN_ASSOCIATION: PgpB SUBSYSTEM: S_Glycerophospholipid_Metabolism PROTEIN_CLASS: 3.1.3.4
product: 242863
kinetic law: 242875
fast: false
reactant: 242827
product: 242851
reversible: false

242839
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stoichiometry: 1.0
species: 484771

242863
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stoichiometry: 1.0
species: 485830

242935
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value: -0.009314

242923
type: LocalParameter
units: 017602
value: 0.0

242911
type: LocalParameter
value: 0.0

242899
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units: 017602
value: 999999.0

242887
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units: 017602
value: 0.0

242827
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stoichiometry: 1.0
species: 478591

242851
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stoichiometry: 1.0
species: 460493

460493
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_1_2_Diacyl_sn_glycerol__dihexadecanoyl__n_C160__C35H68O5

505469
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notes: GENE_ASSOCIATION: b1270 PROTEIN_ASSOCIATION: BtuR SUBSYSTEM: S_Cofactor_and_Prosthetic_Group_Biosynthesis PROTEIN_CLASS: 2.5.1.17
product: 065971
reactant: 065935
product: 065983
reversible: true
fast: false
kinetic law: 065995
name: R_Cobinamide_adenyltransferase
reactant: 065947
reactant: 065959

065971
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stoichiometry: 1.0
species: 467032

467032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Adenosyl_cobinamide_C58H84CoN16O11

065935
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stoichiometry: 1.0
species: 469232

065983
type: SpeciesReference
stoichiometry: 1.0
species: 486270

066055
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066043
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units: 017602
value: 0.0

066031
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value: 0.0

066019
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units: 017602
value: 999999.0

066007
type: LocalParameter
units: 017602
value: -999999.0

065947
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stoichiometry: 1.0
species: 469672

469672
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Cobinamide_C48H72CoN11O8

065959
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stoichiometry: 1.0
species: 478711

482991
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313

538306
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product: 276601
reactant: 276589
product: 276626
product: 276614
reactant: 276565
notes: GENE_ASSOCIATION: b1745 PROTEIN_ASSOCIATION: AstB SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS: 2.6.1.69
reactant: 276577
kinetic law: 276638
reversible: false
name: R_Succinylarginine_dihydrolase
fast: false

276601
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stoichiometry: 1.0
species: 470632

276589
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stoichiometry: 1.0
species: 488370

488370
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N2_Succinyl_L_arginine_C10H17N4O5

276626
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stoichiometry: 1.0
species: 488550

488550
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N2_Succinyl_L_ornithine_C9H15N2O5

276614
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stoichiometry: 2.0
species: 483431

276565
type: SpeciesReference
stoichiometry: 2.0
species: 478711

276577
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stoichiometry: 2.0
species: 478591

276698
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value: 0.0

276686
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units: 017602
value: 0.0

276674
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value: 0.0

276662
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units: 017602
value: 999999.0

276650
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units: 017602
value: 0.0

474172
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_ethanesulfonate_C2H5O3S

501409
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product: 040635
reversible: true
product: 040623
fast: false
name: R_acetylornithine_transaminase
notes: GENE_ASSOCIATION: ( b3359 or b1748 ) PROTEIN_ASSOCIATION: ( ArgD ) or ( AstC ) SUBSYSTEM: S_Arginine_and_Proline_Metabolism PROTEIN_CLASS: 2.6.1.11
reactant: 040599
kinetic law: 040647
reactant: 040611

040635
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stoichiometry: 1.0
species: 477311

040623
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stoichiometry: 1.0
species: 466192

466192
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N_Acetyl_L_glutamate_5_semialdehyde_C7H10NO4

040599
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stoichiometry: 1.0
species: 466792

466792
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_N2_Acetyl_L_ornithine_C7H14N2O3

040707
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value: 0.0

040695
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units: 017602
value: -0.236257

040683
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value: 0.0

040671
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units: 017602
value: 999999.0

040659
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040611
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stoichiometry: 1.0
species: 467432

465592
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_6_phospho_D_glucono_1_5_lactone_C6H9O9P

510388
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kinetic law: 099062
name: R_enoyl_acyl_carrier_protein_reductase__NADH___n_C161_
reversible: false
product: 099038
reactant: 099002
reactant: 099014
fast: false
notes: GENE_ASSOCIATION: b1288 PROTEIN_ASSOCIATION: FabI SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 1.3.1.9
product: 099050
reactant: 099026

099122
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099110
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value: 0.120141

099098
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value: 999999.0

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units: 017602
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species: 479011

479011
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boundary condition: false
has only substance units: false
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initial amount: NaN
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488750
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initial amount: NaN
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540645
type: Reaction
product: 301773
reactant: 301761
product: 301785
kinetic law: 301797
reactant: 301749
fast: false
name: R_uridylate_kinase__dUMP_
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notes: GENE_ASSOCIATION: b0171 PROTEIN_ASSOCIATION: PyrHec SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS:

301773
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species: 467132

301761
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species: 473752

301785
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species: 473732

473732
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_dUDP_C9H11N2O11P2

301857
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301845
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value: -0.020902

301833
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301821
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301809
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301749
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species: 469232

524867
type: Reaction
kinetic law: 185528
product: 185516
reactant: 185504
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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reversible: true
name: R_Hypoxanthine_transport__periplasm_

185588
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185576
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value: 0.0

185564
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185552
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value: 999999.0

185540
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units: 017602
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185516
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species: 479591

185504
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species: 479631

479631
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Hypoxanthine_C5H4N4O

528526
type: Reaction
reactant: 212496
name: R_methionine_adenosyltransferase
fast: false
reversible: false
product: 212556
reactant: 212520
product: 212532
kinetic law: 212568
product: 212544
reactant: 212508
notes: GENE_ASSOCIATION: b2942 PROTEIN_ASSOCIATION: MetK SUBSYSTEM: S_Methionine_Metabolism PROTEIN_CLASS: 2.5.1.6

212496
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stoichiometry: 1.0
species: 469232

212556
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stoichiometry: 1.0
species: 486210

212520
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species: 482031

212532
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stoichiometry: 1.0
species: 467992

212628
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212616
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units: 017602
value: 5.34E-4

212604
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value: 0.0

212592
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units: 017602
value: 999999.0

212580
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212544
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species: 485830

212508
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species: 478591

501389
type: Reaction
kinetic law: 040526
product: 040514
reactant: 040502
reactant: 040490
notes: GENE_ASSOCIATION: ( b0118 or b1276 ) PROTEIN_ASSOCIATION: ( AcnB ) or ( AcnA ) SUBSYSTEM: S_Citric_Acid_Cycle PROTEIN_CLASS: 4.2.1.3
fast: false
reversible: true
name: R_aconitase__half_reaction_B__Isocitrate_hydro_lyase_

040587
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value: 0.0

040575
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units: 017602
value: 2.439388

040563
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040551
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units: 017602
value: 999999.0

040538
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units: 017602
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040514
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stoichiometry: 1.0
species: 479711

479711
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Isocitrate_C6H5O7

040502
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stoichiometry: 1.0
species: 478591

040490
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stoichiometry: 1.0
species: 466732

466732
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_cis_Aconitate_C6H3O6

492150
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_XTP_C10H11N4O15P3

510168
type: Reaction
reactant: 097566
name: R_enoyl_acyl_carrier_protein_reductase__NADPH___n_C100_
product: 097578
reactant: 097542
product: 097590
notes: GENE_ASSOCIATION: b1288 PROTEIN_ASSOCIATION: FabI SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 1.3.1.10
fast: false
reversible: false
kinetic law: 097602
reactant: 097554

097566
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stoichiometry: 1.0
species: 489090

489090
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

097578
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stoichiometry: 1.0
species: 472032

472032
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333

097542
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species: 478711

097590
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stoichiometry: 1.0
species: 483371

097662
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097650
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value: 0.0

097638
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value: 0.0

097626
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units: 017602
value: 999999.0

097614
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units: 017602
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097554
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stoichiometry: 1.0
species: 483391

528086
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fast: false
kinetic law: 207393
reactant: 207356
reversible: false
notes: GENE_ASSOCIATION: ( b2417 and b1621 and b2415 and b2416 ) PROTEIN_ASSOCIATION: ( Crr and MalX and PtsH and PtsI ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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reactant: 207344
product: 207369
product: 207381

207453
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207441
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units: 017602
value: 0.0

207429
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207417
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units: 017602
value: 0.0

207405
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units: 017602
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207356
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stoichiometry: 1.0
species: 481391

207344
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stoichiometry: 1.0
species: 485211

207369
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stoichiometry: 1.0
species: 481331

481331
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_Maltose_6__phosphate_C12H21O14P

207381
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stoichiometry: 1.0
species: 487010

506968
type: Reaction
reactant: 077239
product: 077275
reactant: 077227
fast: false
notes: GENE_ASSOCIATION: b0037 PROTEIN_ASSOCIATION: CaiC SUBSYSTEM: S_Oxidative_Phosphorylation PROTEIN_CLASS:
reversible: false
product: 077251
product: 077263
reactant: 077215
kinetic law: 077287
name: R_Crotonobetaine_CoA_Ligase

077239
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stoichiometry: 1.0
species: 471252

077275
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species: 485830

077227
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stoichiometry: 1.0
species: 470692

077251
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species: 467132

077263
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stoichiometry: 1.0
species: 471292

471292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_crotonobetainyl_CoA_C28H44N8O17P3S

077215
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stoichiometry: 1.0
species: 469232

077347
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value: -0.363239

077335
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units: 017602
value: 0.0

077323
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value: 0.0

077311
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units: 017602
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077299
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units: 017602
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514708
type: Reaction
kinetic law: 120957
product: 120944
reactant: 120931
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_hexadecenoate__n_C161__exchange

121018
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121005
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units: 017602
value: 0.0

120993
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value: 0.0

120981
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value: 999999.0

120969
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units: 017602
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120944
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stoichiometry: 1.0
species: 495790

495790
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constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_Hexadecenoate__n_C161__C16H29O2

120931
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species: 478931

511388
type: Reaction
kinetic law: 104878
product: 104866
reactant: 104854
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: true
name: R_2__3__Cyclic_GMP_exchange

104938
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104926
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units: 017602
value: 0.0

104914
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104902
type: LocalParameter
units: 017602
value: 999999.0

104890
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units: 017602
value: 0.0

104866
type: SpeciesReference
stoichiometry: 1.0
species: 492590

492590
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_2__3__Cyclic_GMP_C10H11N5O7P

104854
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species: 461573

461573
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460293
name: M_2__3__Cyclic_GMP_C10H11N5O7P

539066
type: Reaction
kinetic law: 283747
reactant: 283674
reactant: 283698
product: 283710
name: R_sulfite_reductase__NADPH2_
reversible: false
fast: false
product: 283723
notes: GENE_ASSOCIATION: ( b2763 and b2764 ) PROTEIN_ASSOCIATION: CysIJ SUBSYSTEM: S_Cysteine_Metabolism PROTEIN_CLASS: 1.8.2.2
product: 283735
reactant: 283686

283808
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283796
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units: 017602
value: 0.196723

283784
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283772
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units: 017602
value: 999999.0

283759
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units: 017602
value: 0.0

283674
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stoichiometry: 5.0
species: 478711

283698
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stoichiometry: 1.0
species: 488134

283710
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species: 478591

283723
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species: 478651

283735
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species: 483371

283686
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stoichiometry: 3.0
species: 483391

508848
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product: 089449
product: 089437
product: 089425
reversible: false
notes: GENE_ASSOCIATION: b2478 PROTEIN_ASSOCIATION: DapA SUBSYSTEM: S_Threonine_and_Lysine_Metabolism PROTEIN_CLASS: 4.2.1.52
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reactant: 089401
reactant: 089413
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kinetic law: 089461

089449
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species: 478591

089437
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089425
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species: 461793

461793
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_3_Dihydrodipicolinate_C7H5NO4

089401
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species: 469172

469172
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: M_L_Aspartate_4_semialdehyde_C4H7NO3

089413
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species: 487010

089522
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089510
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value: 0.296304

089498
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value: 0.0

089486
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units: 017602
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089473
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units: 017602
value: 0.0

509548
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kinetic law: 093840
product: 093828
reactant: 093816
notes: GENE_ASSOCIATION: PROTEIN_ASSOCIATION: SUBSYSTEM: S_ PROTEIN_CLASS:
fast: false
reversible: false
name: R_Sink_needed_to_allow_oxamate_to_leave_system

093900
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093888
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value: 0.0

093876
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093864
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093852
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units: 017602
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093828
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stoichiometry: 1.0
species: 496429

093816
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stoichiometry: 1.0
species: 484611

537846
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reactant: 273768
product: 273780
notes: GENE_ASSOCIATION: ( ( b4231 and b4227 and b4485 and b4230 ) or ( b3749 and b3751 and b3750 and b3748 ) or ( b4087 and b4088 and b4086 ) ) PROTEIN_ASSOCIATION: ( YjfF and YtfQ and YtfR and YtfT ) or ( RbsA and RbsB and RbsC and RbsDec ) or ( AlsA and AlsB and AlsC ) SUBSYSTEM: S_Transport__Inner_Membrane PROTEIN_CLASS:
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kinetic law: 273828
name: R_D_ribose_transport_via_ABC_system__periplasm_
product: 273816
reversible: false
reactant: 273756
product: 273804
product: 273792
fast: false

273768
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species: 487370

487370
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_D_Ribose_C5H10O5

273780
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species: 467132

273744
type: SpeciesReference
stoichiometry: 1.0
species: 469232

273889
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273877
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value: 0.0

273864
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273852
type: LocalParameter
units: 017602
value: 999999.0

273840
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units: 017602
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273816
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species: 487330

273756
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species: 478591

273804
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species: 485830

273792
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species: 478711

468352
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initial amount: NaN
in compartment: 460333

484971
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M__R__Pantoate_C6H11O4

508508
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kinetic law: 087478
product: 087466
reactant: 087441
name: R_3_deoxy_D_arabino_heptulosonate_7_phosphate_synthetase
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product: 087454
notes: GENE_ASSOCIATION: ( b2601 or b0754 or b1704 ) PROTEIN_ASSOCIATION: ( AroF ) or ( AroGec ) or ( AroH ) SUBSYSTEM: S_Tyrosine__Tryptophan__and_Phenylalanine_Metabolism PROTEIN_CLASS: 4.1.2.15
reversible: false
fast: false
reactant: 087417

087538
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087526
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units: 017602
value: 0.296923

087514
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value: 0.0

087502
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units: 017602
value: 999999.0

087490
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units: 017602
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087466
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stoichiometry: 1.0
species: 485830

087441
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stoichiometry: 1.0
species: 485211

087429
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species: 478591

087454
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species: 462653

462653
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460333
name: M_2_Dehydro_3_deoxy_D_arabino_heptonate_7_phosphate_C7H10O10P

087417
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stoichiometry: 1.0
species: 473932

531166
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name: R_5__nucleotidase__dTMP_
fast: false
product: 230939
product: 230951
reactant: 230927
reversible: false
notes: GENE_ASSOCIATION: ( b0480 or b4055 ) PROTEIN_ASSOCIATION: ( UshA ) or ( AphA ) SUBSYSTEM: S_Nucleotide_Salvage_Pathway PROTEIN_CLASS: 3.1.3.5
reactant: 230915
kinetic law: 230963

230939
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stoichiometry: 1.0
species: 485870

230951
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stoichiometry: 1.0
species: 489510

489510
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_Thymidine_C10H14N2O5

230927
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species: 478631

230915
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stoichiometry: 1.0
species: 473692

473692
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_dTMP_C10H13N2O8P

231023
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231011
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units: 017602
value: 0.0

230999
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230987
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units: 017602
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230975
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520207
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kinetic law: 156674
product: 156662
reactant: 156649
notes: GENE_ASSOCIATION: b0756 PROTEIN_ASSOCIATION: GalM SUBSYSTEM: S_Alternate_Carbon_Metabolism PROTEIN_CLASS: 5.1.3.3
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reversible: false
name: R_aldose_1_epimerase

156734
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156722
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value: 0.0

156710
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156698
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value: 999999.0

156686
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units: 017602
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156662
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stoichiometry: 1.0
species: 476051

156649
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stoichiometry: 1.0
species: 475991

475991
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 460313
name: M_beta_D_Galactose_C6H12O6

499049
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kinetic law: 025957
product: 025945
product: 025933
reactant: 025920
notes: GENE_ASSOCIATION: ( b0180 or b0954 ) PROTEIN_ASSOCIATION: ( FabZ ) or ( FabA ) SUBSYSTEM: S_Cell_Envelope_Biosynthesis PROTEIN_CLASS: 4.2.1.61
fast: false
reversible: false
name: R_3_hydroxyacyl_acyl_carrier_protein_dehydratase__n_C161_

026019
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026007
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value: 0.120141

025995
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025982
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025969
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025945
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species: 488750

025933
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025920
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species: 463853

463853
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boundary condition: false
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509728
type: Reaction
name: R_DsbA_protein_reoxidation_reaction__anaerobic_
notes: GENE_ASSOCIATION: ( b3860 and b1185 ) PROTEIN_ASSOCIATION: ( DsbA and DsbB ) SUBSYSTEM: S_Unassigned PROTEIN_CLASS:
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reversible: false
fast: false
product: 094929
reactant: 094917
product: 094941
reactant: 094904

095014
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095001
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units: 017602
value: 0.0

094989
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094977
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value: 999999.0

094965
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094929
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product: 028358
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502709
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name: R_Phosphatidylglycerol_synthase__n_C120_
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name: M_Phosphatidylglycerophosphate__didodecanoyl__n_C120__C30H57O13P2

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species: 470572

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251936
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517407
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product: 136614
product: 136590
product: 136602
kinetic law: 136626
fast: false
reversible: false
name: R_fatty_acid_CoA_thioesterase__hexanoate_
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500669
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notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) PROTEIN_ASSOCIATION: ( PhoE ) or ( OmpF ) or ( OmpN ) or ( OmpC ) SUBSYSTEM: S_Transport__Outer_Membrane_Porin PROTEIN_CLASS:
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466212
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522187
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536986
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product: 268429
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486711
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539965
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reactant: 294576
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kinetic law: 294648
reactant: 294588

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294576
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