MODEL1949107276
type: SBMLModel
species: M DI DASH H DASH OROTATE LBRACKET C RBRACKET
species: 570763
species: M CPD DASH 218 LBRACKET E RBRACKET
reaction: R TRANS DASH RXN DASH L DASH ASPARTATE
reaction: R THIAZOLSYN3 DASH RXN
species: M CARNITINE LBRACKET E RBRACKET
reaction: 587937
species: M PROTOPORPHYRINOGEN LBRACKET C RBRACKET
species: M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
species: M TREHALOSE DASH 6P LBRACKET C RBRACKET
species: M MALONATE LBRACKET E RBRACKET
reaction: R C16 COLON 1 LPAREN C7 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
reaction: 614392
reaction: R TRANS DASH RXN DASH PRO
species: M IMINOASPARTATE LBRACKET C RBRACKET
reaction: R 3 DASH ISOPROPYLMALDEHYDROG DASH RXN
reaction: R GUANYL DASH KIN DASH RXN
species: M CPD DASH 302 LBRACKET C RBRACKET
reaction: R 1 PERIOD 14 PERIOD 12 PERIOD 1 DASH RXN
species: M PANTETHEINE DASH P LBRACKET C RBRACKET
reaction: R DIHYDROPICRED DASH RXN
reaction: R GLUTSEMIALDEHYDROG DASH RXN
reaction: R UDPNACETYLGLUCOSAMACYLTRANS DASH RXN
reaction: R AICARSYN DASH RXN
reaction: R TYRAMINOTRANS DASH RXN
reaction: R 1 PERIOD 3 PERIOD 1 PERIOD 62 DASH RXN
reaction: R TRANS DASH RXN DASH C6 COLON 2 LPAREN c2 COMMA c4 RPAREN
species: M CPDIM DASH 6118 LBRACKET C RBRACKET
reaction: R H2PTERIDINEPYROPHOSPHOKIN DASH RXN
reaction: R AMPSYN DASH RXN
reaction: R 1 PERIOD 5 PERIOD 1 PERIOD 29 DASH RXN
reaction: 601378
reaction: R TRANS DASH RXN DASH NMN
reaction: 591801
reaction: R PHEAMINOTRANS DASH RXN
reaction: R DIHYDROFOLATEREDUCT DASH RXN
reaction: R AICARTRANSFORM DASH RXN
reaction: R SALICYLATE DASH 1 DASH MONOOXYGENASE DASH RXN
reaction: R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
reaction: R BRANCHED DASH CHAINAMINOTRANSFERILEU DASH RXN
reaction: 582158
reaction: 586554
species: M L DASH ORNITHINE LBRACKET E RBRACKET
species: M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET
reaction: R RXN0 DASH 383
reaction: 602142
species: M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET
reaction: R DIHYDROFOLATESYNTH DASH RXN
species: M ALLANTOATE LBRACKET C RBRACKET
reaction: R ADENYL DASH KIN DASH RXN
reaction: 577780
reaction: 614730
species: 570547
species: M L DASH ORNITHINE LBRACKET C RBRACKET
reaction: R CHORISMATE DASH SYNTHASE DASH RXN
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET
species: 570318
species: M CPD DASH 6501 LBRACKET C RBRACKET
reaction: 580394
species: M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET
reaction: R DXS DASH RXN
species: M OH DASH PYR LBRACKET C RBRACKET
reaction: R GLYRIBONUCSYN DASH RXN
species: M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET
species: M INOSINE LBRACKET C RBRACKET
reaction: 597738
reaction: R C10 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
species: M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
reaction: R PYRIMSYN3 DASH RXN
species: 570787
species: M CDPDIACYLGLYCEROL LBRACKET C RBRACKET
species: M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET
reaction: R PRAISOM DASH RXN
species: M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET
species: M C6 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
species: M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET
reaction: R ORNDECARBOX DASH RXN
species: 570811

M DI DASH H DASH OROTATE LBRACKET C RBRACKET
type: Species
boundary condition: false
initial concentration: NaN
is: C00337
name: dihydroorotate
constant: false
is: dhor-S
initial amount: NaN
has only substance units: false
is: DI-H-OROTATE
in compartment: 570138

570138
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: cytoplasm

570763
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-tetradec-2,4-enoyl-coa

M CPD DASH 218 LBRACKET E RBRACKET
type: Species
constant: false
in compartment: 570126
boundary condition: false
is: met-D
is: CPD-218
name: d-methionine
is: C00855
has only substance units: false
initial amount: NaN
initial concentration: NaN

570126
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: extracellular space

R TRANS DASH RXN DASH L DASH ASPARTATE
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD1026 or ACIAD2227 or ACIAD1191 or ACIAD1866
is: TRANS-RXN-122A
reactant: 606666
product: 606702
product: 606690
reactant: 606678
name: transport of l-aspartate [extraorganism;cytosol](secondary symport)
fast: false

606666
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET

M L DASH ASPARTATE LBRACKET E RBRACKET
type: Species
in compartment: 570126
name: l-aspartate
is: C00049
initial concentration: NaN
boundary condition: false
is: L-ASPARTATE
is: asp-L
constant: false
has only substance units: false
initial amount: NaN

606702
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

M L DASH ASPARTATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
boundary condition: false
is: L-ASPARTATE
has only substance units: false
initial concentration: NaN
in compartment: 570138
is: asp-L
name: l-aspartate
is: C00049

606690
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

M PROTON LBRACKET C RBRACKET
type: Species
is: C00080
constant: false
is: http://bigg.ucsd.edu/#h
in compartment: 570138
boundary condition: false
initial concentration: NaN
name: h+
has only substance units: false
is: PROTON
initial amount: NaN

606678
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

M PROTON LBRACKET P RBRACKET
type: Species
in compartment: 570114
is: http://bigg.ucsd.edu/#h
is: C00080
initial amount: NaN
constant: false
name: h+
has only substance units: false
is: PROTON
initial concentration: NaN
boundary condition: false

570114
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: periplasmic space

R THIAZOLSYN3 DASH RXN
type: Reaction
reactant: 601294
name: hydroxyethylthiazole kinase
reversible: true
fast: false
product: 601318
notes: GENE_ASSOCIATION: ACIAD2011
product: 601306
is: HETZK
reactant: 601282
is: THIAZOLSYN3-RXN

601294
type: SpeciesReference
stoichiometry: 1.0
species: M THZ LBRACKET C RBRACKET

M THZ LBRACKET C RBRACKET
type: Species
is: C04294
initial concentration: NaN
constant: false
boundary condition: false
in compartment: 570138
initial amount: NaN
is: THZ
name: 4-methyl-5-(beta-hydroxyethyl)thiazole
has only substance units: false
is: 4mhetz

601318
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

M ADP LBRACKET C RBRACKET
type: Species
is: ADP
in compartment: 570138
initial concentration: NaN
boundary condition: false
is: adp
is: C00008
initial amount: NaN
constant: false
has only substance units: false
name: adp

601306
type: SpeciesReference
stoichiometry: 1.0
species: M THZ DASH P LBRACKET C RBRACKET

M THZ DASH P LBRACKET C RBRACKET
type: Species
is: THZ-P
initial amount: NaN
is: C04327
is: 4mpetz
initial concentration: NaN
name: 4-methyl-5-(beta-hydroxyethyl)thiazole phosphate
constant: false
in compartment: 570138
has only substance units: false
boundary condition: false

601282
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

M ATP LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
is: C00002
name: atp
is: atp
initial concentration: NaN
is: ATP
in compartment: 570138
has only substance units: false
initial amount: NaN

M CARNITINE LBRACKET E RBRACKET
type: Species
has only substance units: false
initial amount: NaN
initial concentration: NaN
constant: false
is: CARNITINE
is: C00318
in compartment: 570126
name: l-carnitine
boundary condition: false
is: crn

587937
type: Reaction
reactant: 587949
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of taurine

587949
type: SpeciesReference
stoichiometry: 1.0
species: M TAURINE LBRACKET E RBRACKET

M TAURINE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
is: taur
initial amount: NaN
is: TAURINE
boundary condition: false
name: taurine
is: C00245
constant: false
in compartment: 570126
has only substance units: false

M PROTOPORPHYRINOGEN LBRACKET C RBRACKET
type: Species
constant: false
is: PROTOPORPHYRINOGEN
in compartment: 570138
is: C01079
has only substance units: false
name: protoporphyrinogen
is: pppg9
initial concentration: NaN
boundary condition: false
initial amount: NaN

M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
is: 3ooctdACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-oxooctadecanoyl-acp

M TREHALOSE DASH 6P LBRACKET C RBRACKET
type: Species
is: C00689
is: TREHALOSE-6P
boundary condition: false
constant: false
is: tre6p
in compartment: 570138
name: alpha,alpha-trehalose 6-phosphate
initial concentration: NaN
initial amount: NaN
has only substance units: false

M MALONATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
is: C00383
in compartment: 570126
is: MALONATE
has only substance units: false
boundary condition: false
constant: false
name: malonate
initial concentration: NaN

R C16 COLON 1 LPAREN C7 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
product: 586530
reversible: false
reactant: 586506
fast: false
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c16:1(c7))
reactant: 586518
product: 586542
is: ENOYL-ACP-REDUCT-NADH-RXN

586530
type: SpeciesReference
stoichiometry: 1.0
species: 570559

570559
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enoyl-acp

586506
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

M NADH LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
initial amount: NaN
is: nadh
has only substance units: false
constant: false
is: NADH
is: C00004
name: nadh
initial concentration: NaN

586518
type: SpeciesReference
stoichiometry: 1.0
species: 571148

571148
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-hexadec-2,7-enoyl-acp

586542
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

M NAD LBRACKET C RBRACKET
type: Species
constant: false
name: nad
in compartment: 570138
has only substance units: false
initial concentration: NaN
is: NAD
is: nad
boundary condition: false
is: C00003
initial amount: NaN

614392
type: Reaction
reactant: 614405
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of propionate

614405
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONATE LBRACKET E RBRACKET

M PROPIONATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
boundary condition: false
is: C00163
constant: false
has only substance units: false
is: PROPIONATE
is: ppa
name: propionate
initial concentration: NaN
in compartment: 570126

R TRANS DASH RXN DASH PRO
type: Reaction
reactant: 616693
is: PROt2rpp
notes: GENE_ASSOCIATION: ACIAD1168
product: 616718
reversible: false
reactant: 616705
name: transport of l-proline [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-29
product: 616730
fast: false

616693
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

616718
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET

M PRO LBRACKET C RBRACKET
type: Species
is: PRO
constant: false
initial amount: NaN
initial concentration: NaN
in compartment: 570138
is: C00148
boundary condition: false
is: pro-L
name: l-proline
has only substance units: false

616705
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET E RBRACKET

M PRO LBRACKET E RBRACKET
type: Species
initial amount: NaN
constant: false
boundary condition: false
initial concentration: NaN
is: PRO
in compartment: 570126
name: l-proline
has only substance units: false
is: pro-L
is: C00148

616730
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

M IMINOASPARTATE LBRACKET C RBRACKET
type: Species
name: iminoaspartate
is: C05840
boundary condition: false
is: IMINOASPARTATE
initial amount: NaN
initial concentration: NaN
constant: false
in compartment: 570138
has only substance units: false
is: iasp

R 3 DASH ISOPROPYLMALDEHYDROG DASH RXN
type: Reaction
product: 599165
product: 599153
fast: false
reactant: 599129
notes: GENE_ASSOCIATION: ACIAD0469
product: 599177
reactant: 599141
is: IPMD
name: 3-isopropylmalate dehydrogenase
is: 3-ISOPROPYLMALDEHYDROG-RXN
reversible: false

599165
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

599153
type: SpeciesReference
stoichiometry: 1.0
species: M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET

M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial concentration: NaN
has only substance units: false
is: 4mop
is: 2K-4CH3-PENTANOATE
constant: false
boundary condition: false
is: C00233
name: 2-keto-4-methyl-pentanoate
initial amount: NaN

599129
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH D DASH THREO DASH HYDROXY DASH 3 DASH CARBOXY DASH ISOCAPROATE LBRACKET C RBRACKET

M 2 DASH D DASH THREO DASH HYDROXY DASH 3 DASH CARBOXY DASH ISOCAPROATE LBRACKET C RBRACKET
type: Species
constant: false
name: 2-d-threo-hydroxy-3-carboxy-isocaproate
is: 3c2hmp
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
is: 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE
is: C04411
initial concentration: NaN

599177
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

M CARBON DASH DIOXIDE LBRACKET C RBRACKET
type: Species
is: CARBON-DIOXIDE
is: C00011
is: co2
initial amount: NaN
initial concentration: NaN
in compartment: 570138
boundary condition: false
name: co2
constant: false
has only substance units: false

599141
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R GUANYL DASH KIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3324
product: 595805
reactant: 595768
fast: false
is: GUANYL-KIN-RXN
name: gmp kinase
is: GK1
reactant: 595781
product: 595793
reversible: true

595805
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

595768
type: SpeciesReference
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET

M GMP LBRACKET C RBRACKET
type: Species
is: C00144
name: gmp
is: GMP
boundary condition: false
initial concentration: NaN
in compartment: 570138
is: gmp
constant: false
initial amount: NaN
has only substance units: false

595781
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

595793
type: SpeciesReference
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET

M GDP LBRACKET C RBRACKET
type: Species
is: C00035
boundary condition: false
initial concentration: NaN
in compartment: 570138
name: gdp
initial amount: NaN
constant: false
has only substance units: false
is: GDP
is: gdp

M CPD DASH 302 LBRACKET C RBRACKET
type: Species
is: CPD-302
in compartment: 570138
is: asp-D
constant: false
has only substance units: false
boundary condition: false
initial concentration: NaN
initial amount: NaN
is: C00402
name: d-aspartate

R 1 PERIOD 14 PERIOD 12 PERIOD 1 DASH RXN
type: Reaction
is: 1.14.12.1-RXN
reversible: false
product: 612086
product: 612110
product: 612074
product: 612098
reactant: 612062
reactant: 612038
fast: false
notes: GENE_ASSOCIATION: ACIAD2669 and ACIAD2670 and ACIAD2671
reactant: 612050
name: anthranilate 1,2-dioxygenase (deaminating, decarboxylating)

612086
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

M NADP LBRACKET C RBRACKET
type: Species
name: nadp
has only substance units: false
is: NADP
boundary condition: false
is: nadp
in compartment: 570138
constant: false
initial amount: NaN
initial concentration: NaN
is: C00006

612110
type: SpeciesReference
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET

M CATECHOL LBRACKET C RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
constant: false
name: catechol
is: C15571
boundary condition: false
is: CATECHOL
initial amount: NaN
in compartment: 570138

612074
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

M AMMONIUM LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: AMMONIUM
in compartment: 570138
initial concentration: NaN
has only substance units: false
name: nh4+
constant: false
boundary condition: false
is: nh4
is: C01342

612098
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

612062
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

M NADPH LBRACKET C RBRACKET
type: Species
is: nadph
initial concentration: NaN
name: nadph
boundary condition: false
has only substance units: false
in compartment: 570138
constant: false
initial amount: NaN
is: NADPH
is: C00005

612038
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

M OXYGEN DASH MOLECULE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: C00007
in compartment: 570138
is: OXYGEN-MOLECULE
has only substance units: false
initial amount: NaN
name: o2
is: o2
constant: false
boundary condition: false

612050
type: SpeciesReference
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET

M ANTHRANILATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
is: ANTHRANILATE
has only substance units: false
initial concentration: NaN
is: C00108
initial amount: NaN
is: anth
boundary condition: false
name: 2-aminobenzoate

M PANTETHEINE DASH P LBRACKET C RBRACKET
type: Species
is: C01134
has only substance units: false
constant: false
initial concentration: NaN
initial amount: NaN
is: PANTETHEINE-P
is: pan4p
boundary condition: false
name: pantetheine 4'-phosphate
in compartment: 570138

R DIHYDROPICRED DASH RXN
type: Reaction
reactant: 589704
reactant: 589716
name: dihydrodipicolinate reductase
is: DHDPRy
is: DIHYDROPICRED-RXN
product: 589740
fast: false
reversible: false
notes: GENE_ASSOCIATION: ACIAD3619
product: 589728

589704
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

589716
type: SpeciesReference
stoichiometry: 1.0
species: M 2 COMMA 3 DASH DIHYDRODIPICOLINATE LBRACKET C RBRACKET

M 2 COMMA 3 DASH DIHYDRODIPICOLINATE LBRACKET C RBRACKET
type: Species
is: 2,3-dihydrodipicolinate
constant: false
is: 23dhdp
initial concentration: NaN
initial amount: NaN
name: 2,3-dihydrodipicolinate
boundary condition: false
is: C03340
in compartment: 570138
has only substance units: false

589740
type: SpeciesReference
stoichiometry: 1.0
species: M DELTA LBRACE 1 RBRACE DASH PIPERIDEINE DASH 2 DASH 6 DASH DICARBOXYLATE LBRACKET C RBRACKET

M DELTA LBRACE 1 RBRACE DASH PIPERIDEINE DASH 2 DASH 6 DASH DICARBOXYLATE LBRACKET C RBRACKET
type: Species
is: DELTA{1}-PIPERIDEINE-2-6-DICARBOXYLATE
constant: false
boundary condition: false
has only substance units: false
initial amount: NaN
is: C03972
name: tetrahydrodipicolinate
in compartment: 570138
is: thdp
initial concentration: NaN

589728
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R GLUTSEMIALDEHYDROG DASH RXN
type: Reaction
product: 596743
reversible: false
product: 596755
fast: false
product: 596731
reactant: 596707
notes: GENE_ASSOCIATION: ACIAD0547
name: glutamate-5-semialdehyde dehydrogenase
is: G5SD
reactant: 596719
is: GLUTSEMIALDEHYDROG-RXN

596743
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

596755
type: SpeciesReference
stoichiometry: 1.0
species: 570944

570944
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-GLUTAMATE_GAMMA-SEMIALDEHYDE

596731
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

M PI LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C00009
is: pi
name: phosphate
initial concentration: NaN
boundary condition: false
is: Pi
constant: false
has only substance units: false
initial amount: NaN

596707
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH GLUTAMATE DASH 5 DASH P LBRACKET C RBRACKET

M L DASH GLUTAMATE DASH 5 DASH P LBRACKET C RBRACKET
type: Species
is: glu5p
initial concentration: NaN
constant: false
boundary condition: false
in compartment: 570138
name: l-glutamate-5-phosphate
is: C03287
has only substance units: false
initial amount: NaN
is: L-GLUTAMATE-5-P

596719
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

R UDPNACETYLGLUCOSAMACYLTRANS DASH RXN
type: Reaction
product: 608097
notes: GENE_ASSOCIATION: ACIAD1382
product: 608109
fast: false
is: UDPNACETYLGLUCOSAMACYLTRANS-RXN
reversible: true
name: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
is: UAGAAT
reactant: 608073
reactant: 608085

608097
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH ACETYLGLUCOSAMINE LBRACKET C RBRACKET

M UDP DASH OHMYR DASH ACETYLGLUCOSAMINE LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
is: u3aga
name: udp-3-o-(3-hydroxymyristoyl)-n-acetylglucosamine
initial amount: NaN
has only substance units: false
is: UDP-OHMYR-ACETYLGLUCOSAMINE
in compartment: 570138
initial concentration: NaN
is: C04738

608109
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

M ACP LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C00229
is: ACP
initial amount: NaN
in compartment: 570138
constant: false
initial concentration: NaN
name: acyl carrier protein
boundary condition: false

608073
type: SpeciesReference
stoichiometry: 1.0
species: 570823

570823
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-OHACYL-ACP_LPS

608085
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET

M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
constant: false
is: uacgam
is: UDP-N-ACETYL-D-GLUCOSAMINE
is: C00043
initial amount: NaN
name: udp-n-acetyl-d-glucosamine
has only substance units: false
in compartment: 570138

R AICARSYN DASH RXN
type: Reaction
reactant: 602936
is: AICARSYN-RXN
reversible: true
product: 602948
name: adenylosuccinate lyase
fast: false
is: ADSL2r
product: 602960
notes: GENE_ASSOCIATION: ACIAD1219

602936
type: SpeciesReference
stoichiometry: 1.0
species: M P DASH RIBOSYL DASH 4 DASH SUCCCARB DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

M P DASH RIBOSYL DASH 4 DASH SUCCCARB DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: Species
is: 25aics
has only substance units: false
in compartment: 570138
constant: false
initial amount: NaN
initial concentration: NaN
name: 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole
is: P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE
is: C04823
boundary condition: false

602948
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

M FUM LBRACKET C RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
boundary condition: false
name: fumarate
is: C00122
initial amount: NaN
in compartment: 570138
is: fum
is: FUM
constant: false

602960
type: SpeciesReference
stoichiometry: 1.0
species: M AICAR LBRACKET C RBRACKET

M AICAR LBRACKET C RBRACKET
type: Species
constant: false
is: AICAR
is: C04677
boundary condition: false
name: aicar
initial amount: NaN
is: aicar
initial concentration: NaN
in compartment: 570138
has only substance units: false

R TYRAMINOTRANS DASH RXN
type: Reaction
reactant: 584377
product: 584401
name: tyrosine aminotransferase
notes: GENE_ASSOCIATION: ACIAD0597 or ACIAD2574 or ACIAD0112
product: 584413
reversible: true
is: TYRTA
is: TYRAMINOTRANS-RXN
fast: false
reactant: 584389

584377
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

M GLT LBRACKET C RBRACKET
type: Species
name: l-glutamate
is: GLT
is: C00025
initial amount: NaN
in compartment: 570138
boundary condition: false
is: glu-L
initial concentration: NaN
has only substance units: false
constant: false

584401
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
constant: false
initial amount: NaN
is: C00026
is: 2-KETOGLUTARATE
is: akg
initial concentration: NaN
name: 2-oxoglutarate
has only substance units: false

584413
type: SpeciesReference
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET

M TYR LBRACKET C RBRACKET
type: Species
name: l-tyrosine
is: C00082
in compartment: 570138
is: tyr-L
boundary condition: false
initial concentration: NaN
constant: false
has only substance units: false
initial amount: NaN
is: TYR

584389
type: SpeciesReference
stoichiometry: 1.0
species: M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET

M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET
type: Species
is: C01179
constant: false
initial concentration: NaN
is: P-HYDROXY-PHENYLPYRUVATE
boundary condition: false
has only substance units: false
name: p-hydroxyphenylpyruvate
in compartment: 570138
is: 34hpp
initial amount: NaN

R 1 PERIOD 3 PERIOD 1 PERIOD 62 DASH RXN
type: Reaction
reactant: 579428
notes: GENE_ASSOCIATION: ACIAD1693
reversible: false
product: 579464
is: 1.3.1.62-RXN
product: 579452
name: pimeloyl-coa dehydrogenase
fast: false
reactant: 579440

579428
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

M FAD LBRACKET C RBRACKET
type: Species
boundary condition: false
name: fad
is: FAD
initial amount: NaN
initial concentration: NaN
is: fad
in compartment: 570138
is: C00016
has only substance units: false
constant: false

579464
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

M FADH2 LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
is: fadh2
boundary condition: false
is: FADH2
initial concentration: NaN
in compartment: 570138
is: C01352
name: fadh2
initial amount: NaN

579452
type: SpeciesReference
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEX DASH 2 DASH ENOYL DASH COA LBRACKET C RBRACKET

M 6 DASH CARBOXYHEX DASH 2 DASH ENOYL DASH COA LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
boundary condition: false
in compartment: 570138
is: 6-CARBOXYHEX-2-ENOYL-COA
name: 6-carboxyhex-2-enoyl-coa
initial concentration: NaN
is: C06723
initial amount: NaN

579440
type: SpeciesReference
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET

M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
is: pmcoa
boundary condition: false
is: 6-CARBOXYHEXANOYL-COA
in compartment: 570138
is: C01063
name: 6-carboxyhexanoyl-coa

R TRANS DASH RXN DASH C6 COLON 2 LPAREN c2 COMMA c4 RPAREN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
fast: false
product: 593330
reversible: true
reactant: 593294
product: 593318
is: TRANS-RXNIM-5726
name: transport of sorbate [extraorganism;cytosol](secondary symport)
reactant: 593306

593330
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET C RBRACKET

M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET C RBRACKET
type: Species
is: CPD-3624
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: sorbate

593294
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET E RBRACKET

M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET E RBRACKET
type: Species
is: CPD-3624
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: sorbate

593318
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

593306
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

M CPDIM DASH 6118 LBRACKET C RBRACKET
type: Species
is: CPDIM-6118
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3,4-dihydroxyphenylpropionyl-coa

R H2PTERIDINEPYROPHOSPHOKIN DASH RXN
type: Reaction
reversible: true
product: 611448
fast: false
notes: GENE_ASSOCIATION: ACIAD3062
reactant: 611436
product: 611460
name: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
reactant: 611424
is: H2PTERIDINEPYROPHOSPHOKIN-RXN
is: HPPK2

611448
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROPTERIN DASH CH2OH DASH PP LBRACKET C RBRACKET

M DIHYDROPTERIN DASH CH2OH DASH PP LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
initial concentration: NaN
constant: false
name: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate
in compartment: 570138
has only substance units: false
is: DIHYDROPTERIN-CH2OH-PP
is: 2ahhmd
is: C04807

611436
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

611460
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

M AMP LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
constant: false
is: AMP
name: amp
in compartment: 570138
is: amp
is: C00020
has only substance units: false
boundary condition: false

611424
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH OH DASH HYDROXYMETHYL DASH DIHYDROPTERIDINE LBRACKET C RBRACKET

M AMINO DASH OH DASH HYDROXYMETHYL DASH DIHYDROPTERIDINE LBRACKET C RBRACKET
type: Species
is: C01300
initial amount: NaN
in compartment: 570138
name: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine
initial concentration: NaN
constant: false
boundary condition: false
has only substance units: false
is: AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE
is: 2ahhmp

R AMPSYN DASH RXN
type: Reaction
name: adenylosuccinate lyase
is: ADSL1r
is: AMPSYN-RXN
reactant: 596575
fast: false
reversible: true
product: 596599
notes: GENE_ASSOCIATION: ACIAD1219
product: 596587

596575
type: SpeciesReference
stoichiometry: 1.0
species: M ADENYLOSUCC LBRACKET C RBRACKET

M ADENYLOSUCC LBRACKET C RBRACKET
type: Species
is: dcamp
has only substance units: false
is: C03794
initial concentration: NaN
initial amount: NaN
is: ADENYLOSUCC
boundary condition: false
in compartment: 570138
name: adenylo-succinate
constant: false

596599
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

596587
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

R 1 PERIOD 5 PERIOD 1 PERIOD 29 DASH RXN
type: Reaction
is: FLDO
reactant: 609425
product: 609449
reversible: true
fast: false
product: 609437
is: 1.5.1.29-RXN
name: fmn reductase
notes: GENE_ASSOCIATION: ACIAD3470
reactant: 609412

609425
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

609449
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

609437
type: SpeciesReference
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET

M FMN LBRACKET C RBRACKET
type: Species
is: C00061
initial concentration: NaN
boundary condition: false
name: fmn
is: fmn
in compartment: 570138
has only substance units: false
constant: false
is: FMN
initial amount: NaN

609412
type: SpeciesReference
stoichiometry: 1.0
species: M FMNH2 LBRACKET C RBRACKET

M FMNH2 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
constant: false
is: C01847
is: fmnh2
has only substance units: false
name: fmnh2
boundary condition: false
is: FMNH2
initial amount: NaN

601378
type: Reaction
reactant: 601390
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyguanosine

601390
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET E RBRACKET

M DEOXYGUANOSINE LBRACKET E RBRACKET
type: Species
constant: false
boundary condition: false
is: DEOXYGUANOSINE
initial amount: NaN
has only substance units: false
is: dgsn
name: deoxyguanosine
initial concentration: NaN
in compartment: 570126
is: C00330

R TRANS DASH RXN DASH NMN
type: Reaction
product: 585448
reactant: 585436
notes: GENE_ASSOCIATION: ACIAD1033
is: TRANS-RXN-9
is: NMNPtpp
fast: false
reversible: false
name: transport of nicotinamide nucleotide [extraorganism;cytosol](passive)

585448
type: SpeciesReference
stoichiometry: 1.0
species: 570402

570402
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: NICOTINAMIDE_NUCLEOTIDE

585436
type: SpeciesReference
stoichiometry: 1.0
species: 570499

570499
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: NICOTINAMIDE_NUCLEOTIDE

591801
type: Reaction
reactant: 591813
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of benzoate

591813
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET E RBRACKET

M BENZOATE LBRACKET E RBRACKET
type: Species
is: C00180
has only substance units: false
boundary condition: false
is: BENZOATE
initial amount: NaN
in compartment: 570126
name: benzoate
constant: false
initial concentration: NaN
is: bz

R PHEAMINOTRANS DASH RXN
type: Reaction
product: 579873
fast: false
name: phenylalanine aminotransferase
reactant: 579837
is: PHETA1
reversible: true
notes: GENE_ASSOCIATION: ACIAD2574 or ACIAD0597 or ACIAD0112 or ACIAD0664
product: 579861
reactant: 579849
is: PHEAMINOTRANS-RXN

579873
type: SpeciesReference
stoichiometry: 1.0
species: M PHE LBRACKET C RBRACKET

M PHE LBRACKET C RBRACKET
type: Species
has only substance units: false
is: PHE
name: l-phenylalanine
is: C00079
initial concentration: NaN
constant: false
initial amount: NaN
boundary condition: false
is: phe-L
in compartment: 570138

579837
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

579861
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

579849
type: SpeciesReference
stoichiometry: 1.0
species: M PHENYL DASH PYRUVATE LBRACKET C RBRACKET

M PHENYL DASH PYRUVATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
is: phpyr
in compartment: 570138
is: C00166
has only substance units: false
name: phenylpyruvate
boundary condition: false
constant: false
is: PHENYL-PYRUVATE

R DIHYDROFOLATEREDUCT DASH RXN
type: Reaction
product: 593463
fast: false
reversible: true
product: 593451
is: DIHYDROFOLATEREDUCT-RXN
name: dihydrofolate reductase
reactant: 593439
notes: GENE_ASSOCIATION: ACIAD0514
reactant: 593427
is: DHFR

593463
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

593451
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROFOLATE LBRACKET C RBRACKET

M DIHYDROFOLATE LBRACKET C RBRACKET
type: Species
name: 7,8-dihydrofolate
constant: false
is: dhf
is: C00415
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
in compartment: 570138
is: DIHYDROFOLATE

593439
type: SpeciesReference
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET

M THF LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: C00101
boundary condition: false
name: thf
has only substance units: false
in compartment: 570138
initial amount: NaN
is: thf
is: THF
constant: false

593427
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R AICARTRANSFORM DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2447
reactant: 588742
is: AICARTRANSFORM-RXN
reversible: false
product: 588766
is: AICART
product: 588778
reactant: 588754
name: phosphoribosylaminoimidazolecarboxamide formyltransferase
fast: false

588742
type: SpeciesReference
stoichiometry: 1.0
species: M AICAR LBRACKET C RBRACKET

588766
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH FORMAMIDO DASH CARBOXAMIDE LBRACKET C RBRACKET

M PHOSPHORIBOSYL DASH FORMAMIDO DASH CARBOXAMIDE LBRACKET C RBRACKET
type: Species
has only substance units: false
is: fprica
is: PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE
boundary condition: false
initial amount: NaN
initial concentration: NaN
is: C04734
in compartment: 570138
name: phosphoribosyl-formamido-carboxamide
constant: false

588778
type: SpeciesReference
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET

588754
type: SpeciesReference
stoichiometry: 1.0
species: 570186

570186
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 10-FORMYL-THF

R SALICYLATE DASH 1 DASH MONOOXYGENASE DASH RXN
type: Reaction
product: 618647
name: salicylate 1-monooxygenase
reactant: 618611
product: 618635
notes: GENE_ASSOCIATION: ACIAD0984 or ACIAD1424
fast: false
product: 618659
reversible: false
is: SALICYLATE-1-MONOOXYGENASE-RXN
product: 618623
reactant: 618587
reactant: 618599

618647
type: SpeciesReference
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET

618611
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET

M CPD DASH 110 LBRACKET C RBRACKET
type: Species
name: salicylate
boundary condition: false
initial concentration: NaN
initial amount: NaN
is: CPD-110
constant: false
in compartment: 570138
has only substance units: false
is: C00805

618635
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

618659
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M WATER LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial amount: NaN
boundary condition: false
has only substance units: false
constant: false
initial concentration: NaN
is: C00001
name: h2o
is: h2o
is: WATER

618623
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

618587
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

618599
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
reactant: 583568
reversible: false
reactant: 583556
name: 3oxoacyl-acp synthase (c14:1(c5))
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 583580
product: 583592
is: 3-OXOACYL-ACP-SYNTH-RXN
fast: false
product: 583604

583568
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

M MALONYL DASH ACP LBRACKET C RBRACKET
type: Species
is: MALONYL-ACP
initial concentration: NaN
name: malonyl-acp
constant: false
has only substance units: false
in compartment: 570138
boundary condition: false
initial amount: NaN
is: malACP
is: C01209

583556
type: SpeciesReference
stoichiometry: 1.0
species: 570306

570306
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-dodec-3-enoyl-acp

583580
type: SpeciesReference
stoichiometry: 1.0
species: 570426

570426
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxotetradec-4-enoyl-acp

583592
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

583604
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R BRANCHED DASH CHAINAMINOTRANSFERILEU DASH RXN
type: Reaction
is: BRANCHED-CHAINAMINOTRANSFERILEU-RXN
name: isoleucine aminotransferase
product: 616827
fast: false
is: ILETA
reactant: 616803
product: 616815
reactant: 616791
reversible: true
notes: GENE_ASSOCIATION: ACIAD0597

616827
type: SpeciesReference
stoichiometry: 1.0
species: M ILE LBRACKET C RBRACKET

M ILE LBRACKET C RBRACKET
type: Species
is: ILE
constant: false
initial concentration: NaN
boundary condition: false
initial amount: NaN
in compartment: 570138
name: l-iso-leucine
is: C00407
has only substance units: false
is: ile-L

616803
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH METHYL DASH VALERATE LBRACKET C RBRACKET

M 2 DASH KETO DASH 3 DASH METHYL DASH VALERATE LBRACKET C RBRACKET
type: Species
is: C00671
constant: false
initial concentration: NaN
is: 3mop
in compartment: 570138
has only substance units: false
boundary condition: false
name: 2-keto-3-methyl-valerate
is: 2-KETO-3-METHYL-VALERATE
initial amount: NaN

616815
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

616791
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

582158
type: Reaction
reactant: 582170
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-aspartate

582170
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 302 LBRACKET E RBRACKET

M CPD DASH 302 LBRACKET E RBRACKET
type: Species
is: asp-D
initial amount: NaN
is: CPD-302
boundary condition: false
in compartment: 570126
is: C00402
has only substance units: false
constant: false
name: d-aspartate
initial concentration: NaN

586554
type: Reaction
reactant: 586566
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cis-octadec-9-enoate

586566
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET E RBRACKET

M C18 COLON 1 LPAREN C9 RPAREN LBRACKET E RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
is: C00712
boundary condition: false
is: OLEATE-CPD
in compartment: 570126
name: cis-octadec-9-enoate
constant: false
initial amount: NaN

M L DASH ORNITHINE LBRACKET E RBRACKET
type: Species
constant: false
has only substance units: false
name: l-ornithine
initial amount: NaN
in compartment: 570126
is: C01602
initial concentration: NaN
is: orn
is: L-ORNITHINE
boundary condition: false

R RXN0 DASH 383
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3065
fast: false
is: NTPP4
reversible: false
is: RXN0-383
product: 609159
product: 609171
reactant: 609147
name: ctp pyrophosphorylase
reactant: 609135

609159
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

M CMP LBRACKET C RBRACKET
type: Species
is: CMP
is: cmp
initial concentration: NaN
constant: false
is: C00055
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
name: cmp

609171
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

M PPI LBRACKET C RBRACKET
type: Species
has only substance units: false
is: PPI
initial concentration: NaN
in compartment: 570138
is: C00013
initial amount: NaN
is: ppi
name: pyrophosphate
boundary condition: false
constant: false

609147
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

609135
type: SpeciesReference
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET

M CTP LBRACKET C RBRACKET
type: Species
has only substance units: false
is: ctp
is: CTP
in compartment: 570138
name: ctp
boundary condition: false
constant: false
initial amount: NaN
is: C00063
initial concentration: NaN

602142
type: Reaction
reactant: 602154
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of nicotinamide nucleotide

602154
type: SpeciesReference
stoichiometry: 1.0
species: 570499

M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: L-ARGININO-SUCCINATE
is: C03406
has only substance units: false
initial amount: NaN
is: argsuc
constant: false
initial concentration: NaN
in compartment: 570138
name: l-arginino-succinate

R DIHYDROFOLATESYNTH DASH RXN
type: Reaction
fast: false
is: DIHYDROFOLATESYNTH-RXN
reactant: 572952
notes: GENE_ASSOCIATION: ACIAD0644
is: DHFS
reactant: 572976
product: 572988
product: 573000
reversible: false
product: 573013
reactant: 572964
name: dihydrofolate synthase

572952
type: SpeciesReference
stoichiometry: 1.0
species: M 7 COMMA 8 DASH DIHYDROPTEROATE LBRACKET C RBRACKET

M 7 COMMA 8 DASH DIHYDROPTEROATE LBRACKET C RBRACKET
type: Species
constant: false
is: C00921
name: 7,8-dihydropteroate
is: 7,8-dihydropteroate
is: dhpt
initial concentration: NaN
initial amount: NaN
has only substance units: false
boundary condition: false
in compartment: 570138

572976
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

572988
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

573000
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROFOLATE LBRACKET C RBRACKET

573013
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

572964
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

M ALLANTOATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: C00499
boundary condition: false
constant: false
is: ALLANTOATE
name: allantoate
is: alltt
has only substance units: false
initial amount: NaN
in compartment: 570138

R ADENYL DASH KIN DASH RXN
type: Reaction
is: ADENYL-KIN-RXN
reactant: 596442
notes: GENE_ASSOCIATION: ACIAD1105
reversible: true
product: 596466
is: ADK1
reactant: 596454
fast: false
name: adenylate kinase

596442
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

596466
type: SpeciesReference
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET

596454
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

577780
type: Reaction
product: 577804
reactant: 577792
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of acetoacetate [extraorganism;cytosol](passive)

577804
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET

M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET
type: Species
has only substance units: false
name: acetoacetate
in compartment: 570138
is: acac
constant: false
is: C00164
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: 3-KETOBUTYRATE

577792
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET E RBRACKET

M 3 DASH KETOBUTYRATE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: acac
constant: false
is: 3-KETOBUTYRATE
initial concentration: NaN
is: C00164
initial amount: NaN
in compartment: 570126
has only substance units: false
name: acetoacetate

614730
type: Reaction
reactant: 614743
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of adipate

614743
type: SpeciesReference
stoichiometry: 1.0
species: M ADIPATE LBRACKET E RBRACKET

M ADIPATE LBRACKET E RBRACKET
type: Species
is: C06104
has only substance units: false
name: adipate
initial concentration: NaN
in compartment: 570126
boundary condition: false
initial amount: NaN
is: ADIPATE
constant: false

570547
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxytetradec-4-enoyl-coa

M L DASH ORNITHINE LBRACKET C RBRACKET
type: Species
constant: false
initial concentration: NaN
initial amount: NaN
is: orn
is: L-ORNITHINE
in compartment: 570138
has only substance units: false
is: C01602
boundary condition: false
name: l-ornithine

R CHORISMATE DASH SYNTHASE DASH RXN
type: Reaction
reactant: 586651
product: 586663
product: 586675
is: CHORS
name: chorismate synthase
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD2028
is: CHORISMATE-SYNTHASE-RXN

586651
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET

M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET
type: Species
is: C01269
in compartment: 570138
has only substance units: false
initial amount: NaN
boundary condition: false
name: 5-enolpyruvyl-shikimate-3-phosphate
is: 3psme
constant: false
is: 3-ENOLPYRUVYL-SHIKIMATE-5P
initial concentration: NaN

586663
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

586675
type: SpeciesReference
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET

M CHORISMATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial concentration: NaN
is: C00251
constant: false
is: chor
has only substance units: false
is: CHORISMATE
initial amount: NaN
boundary condition: false
name: chorismate

M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET
type: Species
constant: false
name: uroporphyrinogen-iii
is: UROPORPHYRINOGEN-III
boundary condition: false
initial concentration: NaN
in compartment: 570138
is: uppg3
initial amount: NaN
has only substance units: false
is: C01051

570318
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enol

M CPD DASH 6501 LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: benzylacetate
is: CPD-6501
is: C15513
boundary condition: false
constant: false
in compartment: 570138
has only substance units: false

580394
type: Reaction
reactant: 580406
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of octanoate

580406
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET E RBRACKET

M C8 COLON 0 LBRACKET E RBRACKET
type: Species
initial concentration: NaN
is: C06423
initial amount: NaN
has only substance units: false
constant: false
is: octa
is: CPD-195
name: octanoate
in compartment: 570126
boundary condition: false

M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
is: 5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE
in compartment: 570138
initial concentration: NaN
name: 5'-phosphoribosyl-n-formylglycineamide
is: C04376
constant: false
is: fgam
boundary condition: false

R DXS DASH RXN
type: Reaction
reactant: 592078
name: 1-deoxy-d-xylulose 5-phosphate synthase
reactant: 592090
fast: false
reversible: false
is: DXPS
is: DXS-RXN
product: 592114
product: 592102
notes: GENE_ASSOCIATION: ACIAD3247

592078
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

M PYRUVATE LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C00022
initial amount: NaN
is: PYRUVATE
name: pyruvate
is: pyr
in compartment: 570138
initial concentration: NaN
boundary condition: false
constant: false

592090
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

M GAP LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
name: glyceraldehyde-3-phosphate
is: GAP
is: C00661
is: g3p
has only substance units: false
in compartment: 570138
initial concentration: NaN
boundary condition: false

592114
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

592102
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET

M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET
type: Species
is: DEOXYXYLULOSE-5P
initial amount: NaN
boundary condition: false
is: C11437
constant: false
in compartment: 570138
name: 1-deoxy-d-xylulose 5-phosphate
initial concentration: NaN
is: dxyl5p
has only substance units: false

M OH DASH PYR LBRACKET C RBRACKET
type: Species
is: hpyr
name: hydroxypyruvate
is: OH-PYR
initial amount: NaN
in compartment: 570138
has only substance units: false
boundary condition: false
initial concentration: NaN
is: C00168
constant: false

R GLYRIBONUCSYN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2448
product: 587217
product: 587229
product: 587204
name: phosphoribosylamine--glycine ligase
is: PRAGSr
reactant: 587180
fast: false
reactant: 587192
is: GLYRIBONUCSYN-RXN
reactant: 587168
reversible: false

587217
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHO DASH RIBOSYL DASH GLYCINEAMIDE LBRACKET C RBRACKET

M 5 DASH PHOSPHO DASH RIBOSYL DASH GLYCINEAMIDE LBRACKET C RBRACKET
type: Species
is: C03838
is: 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE
has only substance units: false
boundary condition: false
name: 5-phospho-ribosyl-glycineamide
initial concentration: NaN
initial amount: NaN
is: gar
in compartment: 570138
constant: false

587229
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

587204
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

587180
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

M GLY LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
is: C00037
boundary condition: false
is: gly
in compartment: 570138
is: GLY
constant: false
initial concentration: NaN
name: glycine

587192
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

587168
type: SpeciesReference
stoichiometry: 1.0
species: M PRA LBRACKET C RBRACKET

M PRA LBRACKET C RBRACKET
type: Species
constant: false
initial concentration: NaN
is: PRA
in compartment: 570138
is: C03090
name: 5-phosphoribosylamine
boundary condition: false
is: pram
initial amount: NaN
has only substance units: false

M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET
type: Species
is: mettrna
is: C02430
name: charged methionine trna
has only substance units: false
is: CHARGED-MET-TRNAS
boundary condition: false
initial amount: NaN
constant: false
initial concentration: NaN
in compartment: 570138

M INOSINE LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
is: ins
in compartment: 570138
is: INOSINE
boundary condition: false
is: C00294
name: inosine
initial amount: NaN
initial concentration: NaN

597738
type: Reaction
product: 597764
reactant: 597751
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of caffeate [extraorganism;periplasm](passive)

597764
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET P RBRACKET

M CAFFEATE LBRACKET P RBRACKET
type: Species
has only substance units: false
in compartment: 570114
is: C01481
is: CAFFEATE
name: caffeate
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false

597751
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET E RBRACKET

M CAFFEATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
is: C01481
constant: false
in compartment: 570126
name: caffeate
initial concentration: NaN
boundary condition: false
has only substance units: false
is: CAFFEATE

R C10 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
product: 575829
reversible: false
name: 3oxoacyl-acp reductase (c10:0)
reactant: 575805
product: 575841
reactant: 575817
is: 3-OXOACYL-ACP-REDUCT-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0871
is: 3OAR100

575829
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

575805
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

M C10 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
name: 3-oxodecanoyl-acp
is: C05753
boundary condition: false
is: 3odecACP
initial amount: NaN
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN

575841
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

M C10 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: C04619
has only substance units: false
name: 3-hydroxydecanoyl-acp
is: BETA-HYDROXYDECANOYL-ACP
in compartment: 570138
initial amount: NaN
constant: false
is: 3hdecACP
boundary condition: false

575817
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
is: 3hdcoa
in compartment: 570138
name: 3-hydroxydecanoyl-coa
is: C05264
initial amount: NaN
constant: false
initial concentration: NaN
boundary condition: false
has only substance units: false

M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
name: trans-dodec-2-enoyl-acp
is: tddec2eACP
constant: false
boundary condition: false
has only substance units: false
in compartment: 570138
initial amount: NaN
is: C05758

R PYRIMSYN3 DASH RXN
type: Reaction
fast: false
name: phosphomethylpyrimidine kinase
product: 596635
notes: GENE_ASSOCIATION: ACIAD0875
product: 596647
is: PYRIMSYN3-RXN
reactant: 596611
reversible: true
is: PMPK
reactant: 596623

596635
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

596647
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYLPYRIMIDINE DASH PP LBRACKET C RBRACKET

M AMINO DASH HYDROXYMETHYL DASH METHYLPYRIMIDINE DASH PP LBRACKET C RBRACKET
type: Species
is: 2mahmp
is: AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP
name: 4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate
initial amount: NaN
constant: false
boundary condition: false
initial concentration: NaN
in compartment: 570138
has only substance units: false
is: C04752

596611
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

596623
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYL DASH PYR DASH P LBRACKET C RBRACKET

M AMINO DASH HYDROXYMETHYL DASH METHYL DASH PYR DASH P LBRACKET C RBRACKET
type: Species
is: 4ampm
is: AMINO-HYDROXYMETHYL-METHYL-PYR-P
name: 4-amino-5-hydroxymethyl-2-methylpyrimidine-phosphate
is: C04556
in compartment: 570138
initial amount: NaN
boundary condition: false
has only substance units: false
initial concentration: NaN
constant: false

570787
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-hexadec-2,7-enoyl-coa

M CDPDIACYLGLYCEROL LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial amount: NaN
constant: false
is: C00269
has only substance units: false
boundary condition: false
is: CDPDIACYLGLYCEROL
name: generic cdp-diacylglycerol
is: cdpdag EC
initial concentration: NaN

M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET
type: Species
initial amount: NaN
in compartment: 570138
name: charged lysine trna
is: lystrna
boundary condition: false
constant: false
has only substance units: false
initial concentration: NaN
is: C01931
is: CHARGED-LYS-TRNAS

R PRAISOM DASH RXN
type: Reaction
product: 606726
reactant: 606714
notes: GENE_ASSOCIATION: ACIAD0635
is: PRAISOM-RXN
is: PRAIi
fast: false
reversible: false
name: phosphoribosylanthranilate isomerase

606726
type: SpeciesReference
stoichiometry: 1.0
species: M CARBOXYPHENYLAMINO DASH DEOXYRIBULOSE DASH P LBRACKET C RBRACKET

M CARBOXYPHENYLAMINO DASH DEOXYRIBULOSE DASH P LBRACKET C RBRACKET
type: Species
is: C01302
has only substance units: false
initial concentration: NaN
initial amount: NaN
boundary condition: false
is: 2cpr5p
name: 1-(o-carboxyphenylamino)-1'-deoxyribulose-5'-phosphate
constant: false
is: CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P
in compartment: 570138

606714
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH LPAREN 5 DASH PHOSPHORIBOSYL RPAREN DASH ANTHRANILATE LBRACKET C RBRACKET

M N DASH LPAREN 5 DASH PHOSPHORIBOSYL RPAREN DASH ANTHRANILATE LBRACKET C RBRACKET
type: Species
is: C04302
is: N-(5-PHOSPHORIBOSYL)-ANTHRANILATE
has only substance units: false
name: n-(5'-phosphoribosyl)-anthranilate
boundary condition: false
in compartment: 570138
initial concentration: NaN
initial amount: NaN
constant: false
is: pran

M C6 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
is: 3ohexACP
name: 3-oxoxyhexanoyl-acp
boundary condition: false
in compartment: 570138
has only substance units: false
initial amount: NaN
constant: false
initial concentration: NaN
is: C05746

R ORNDECARBOX DASH RXN
type: Reaction
fast: false
product: 574300
notes: GENE_ASSOCIATION: ACIAD2768
reversible: false
is: ORNDECARBOX-RXN
product: 574288
name: ornithine decarboxylase
is: ORNDC
reactant: 574276

574300
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

574288
type: SpeciesReference
stoichiometry: 1.0
species: M PUTRESCINE LBRACKET C RBRACKET

M PUTRESCINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
is: PUTRESCINE
initial amount: NaN
constant: false
name: putrescine
has only substance units: false
is: ptrc
is: C00134
boundary condition: false

574276
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET

570811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 9-carboxy-3-oxononanoyl-coa

M GLUCONATE LBRACKET P RBRACKET
type: Species
is: glcn
boundary condition: false
is: C00257
initial amount: NaN
initial concentration: NaN
constant: false
name: gluconate
in compartment: 570114
is: GLUCONATE
has only substance units: false

R SERINE DASH O DASH ACETTRAN DASH RXN
type: Reaction
reversible: true
reactant: 613616
is: SERAT
fast: false
name: serine o-acetyltransferase
notes: GENE_ASSOCIATION: ACIAD2091 or ACIAD1584 or ACIAD1763
is: SERINE-O-ACETTRAN-RXN
product: 613652
product: 613640
reactant: 613628

613616
type: SpeciesReference
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET

M SER LBRACKET C RBRACKET
type: Species
is: SER
boundary condition: false
has only substance units: false
is: C00065
initial amount: NaN
initial concentration: NaN
constant: false
is: ser-L
in compartment: 570138
name: l-serine

613652
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

M CO DASH A LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
initial amount: NaN
is: CO-A
constant: false
boundary condition: false
is: coa
is: C00010
name: coenzyme a
has only substance units: false

613640
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYLSERINE LBRACKET C RBRACKET

M ACETYLSERINE LBRACKET C RBRACKET
type: Species
is: ACETYLSERINE
in compartment: 570138
constant: false
initial concentration: NaN
initial amount: NaN
is: C00979
name: o-acetyl-l-serine
boundary condition: false
is: acser
has only substance units: false

613628
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

M ACETYL DASH COA LBRACKET C RBRACKET
type: Species
is: ACETYL-COA
is: C00024
in compartment: 570138
initial amount: NaN
name: acetyl-coa
boundary condition: false
initial concentration: NaN
is: accoa
constant: false
has only substance units: false

M C5 LBRACKET C RBRACKET
type: Species
is: C05897
name: n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminoheptane- d-alanyl-d-alanine-diphosphoundecaprenol
is: C5
boundary condition: false
has only substance units: false
initial amount: NaN
is: uagmda
constant: false
initial concentration: NaN
in compartment: 570138

M DIAMINONONANOATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: C01037
is: dann
has only substance units: false
boundary condition: false
constant: false
in compartment: 570138
name: 7,8-diaminononanoate
is: DIAMINONONANOATE
initial amount: NaN

M XANTHOSINE LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
is: C01762
initial concentration: NaN
name: xanthosine
is: XANTHOSINE
initial amount: NaN
in compartment: 570138
is: xtsn
has only substance units: false

570150
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 9-carboxy-3-hydroxynonanoyl-coa

R DEPHOSPHOCOAKIN DASH RXN
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD0359
name: dephospho-coa kinase
is: DEPHOSPHOCOAKIN-RXN
is: DPCOAK
reactant: 571365
fast: false
product: 571377
product: 571389
reactant: 571352

571365
type: SpeciesReference
stoichiometry: 1.0
species: M DEPHOSPHO DASH COA LBRACKET C RBRACKET

M DEPHOSPHO DASH COA LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: DEPHOSPHO-COA
in compartment: 570138
is: C00882
name: dephospho-coa
constant: false
boundary condition: false
has only substance units: false
is: dpcoa
initial amount: NaN

571377
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

571389
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

571352
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R CATECHOL DASH 1 COMMA 2 DASH DIOXYGENASE DASH RXN
type: Reaction
product: 588394
reactant: 588382
reactant: 588370
notes: GENE_ASSOCIATION: ACIAD1442
is: |CATECHOL-1,2-DIOXYGENASE-RXN|
fast: false
reversible: false
name: catechol 1,2-dioxygenase

588394
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET C RBRACKET

M CIS DASH CIS DASH MUCONATE LBRACKET C RBRACKET
type: Species
is: C02480
in compartment: 570138
constant: false
is: CIS-CIS-MUCONATE
name: cis,cis-muconate
initial concentration: NaN
boundary condition: false
has only substance units: false
initial amount: NaN

588382
type: SpeciesReference
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET

588370
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

M 2 DASH C DASH METHYL DASH D DASH ERYTHRITOL DASH 4 DASH PHOSPHATE LBRACKET C RBRACKET
type: Species
is: 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE
is: 2me4p
name: 2-c-methyl-d-erythritol-4-phosphate
is: C11434
initial concentration: NaN
boundary condition: false
has only substance units: false
initial amount: NaN
in compartment: 570138
constant: false

R TRANS DASH RXNIM DASH 5742
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2449 and ACIAD2450 and ACIAD2451
product: 606486
reversible: false
reactant: 606462
is: METabcpp
reactant: 606450
product: 606498
product: 606474
fast: false
reactant: 606438
name: transport of l-methionine [extraorganism;cytosol](primary active atp)
is: TRANS-RXNIM-5742

606486
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET

M MET LBRACKET C RBRACKET
type: Species
name: l-methionine
boundary condition: false
is: met-L
in compartment: 570138
has only substance units: false
is: MET
initial amount: NaN
constant: false
is: C00073
initial concentration: NaN

606462
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

606450
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

606498
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

606474
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

606438
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET E RBRACKET

M MET LBRACKET E RBRACKET
type: Species
name: l-methionine
constant: false
boundary condition: false
is: C00073
initial concentration: NaN
is: MET
initial amount: NaN
is: met-L
in compartment: 570126
has only substance units: false

M CPD DASH 205 LBRACKET C RBRACKET
type: Species
name: pimelate
has only substance units: false
constant: false
is: C02656
is: pime
in compartment: 570138
is: CPD-205
initial concentration: NaN
initial amount: NaN
boundary condition: false

R METHYLISOCITRATE DASH LYASE DASH RXN
type: Reaction
name: methylisocitrate lyase
reversible: false
reactant: 594732
product: 594744
fast: false
is: METHYLISOCITRATE-LYASE-RXN
notes: GENE_ASSOCIATION: ACIAD2758
product: 594756
is: MCITL2

594732
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 618 LBRACKET C RBRACKET

M CPD DASH 618 LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C04593
is: CPD-618
constant: false
initial concentration: NaN
in compartment: 570138
is: micit
initial amount: NaN
name: methylisocitrate
boundary condition: false

594744
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

594756
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

M SUC LBRACKET C RBRACKET
type: Species
has only substance units: false
is: succ
initial amount: NaN
constant: false
initial concentration: NaN
boundary condition: false
name: succinate
is: C00042
is: SUC
in compartment: 570138

M THREO DASH D LPAREN S RPAREN DASH ISO DASH CITRATE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: icit
is: threo-d(s)-iso-citrate
initial amount: NaN
constant: false
has only substance units: false
is: C00311
initial concentration: NaN
name: isocitrate
in compartment: 570138

M LYS LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
constant: false
has only substance units: false
is: lys-L
boundary condition: false
is: LYS
name: l-lysine
is: C00047
initial amount: NaN

R C16 COLON 0 DASH ACP DASH HYDROLASE DASH RXN
type: Reaction
fast: false
reactant: 617091
is: FA160ACPHi
reactant: 617079
product: 617103
reversible: false
product: 617115
name: acyl-acp hydrolase (c16:0)
notes: GENE_ASSOCIATION:

617091
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

617079
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET

M C16 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
constant: false
initial amount: NaN
has only substance units: false
name: hexadecanoyl-acp
boundary condition: false
initial concentration: NaN
is: palmACP
in compartment: 570138
is: C05764

617103
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET

M C16 COLON 0 LBRACKET C RBRACKET
type: Species
is: PALMITATE
is: C00249
has only substance units: false
constant: false
name: hexadecanoate
in compartment: 570138
is: hdca
initial concentration: NaN
boundary condition: false
initial amount: NaN

617115
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

M D DASH LACTATE LBRACKET E RBRACKET
type: Species
is: D-LACTATE
boundary condition: false
name: d-lactate
constant: false
is: lac-D
has only substance units: false
in compartment: 570126
initial amount: NaN
initial concentration: NaN
is: C00256

R L DASH ASPARTATE DASH OXID DASH RXN
type: Reaction
reversible: false
name: l-aspartate oxidase (producing iminoaspartate)
fast: false
notes: GENE_ASSOCIATION: ACIAD2587
is: ASPO6
product: 571858
reactant: 571822
is: L-ASPARTATE-OXID-RXN
product: 571846
reactant: 571834

571858
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: C00027
name: h2o2
is: h2o2
is: HYDROGEN-PEROXIDE
constant: false
initial amount: NaN
initial concentration: NaN
in compartment: 570138

571822
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

571846
type: SpeciesReference
stoichiometry: 1.0
species: M IMINOASPARTATE LBRACKET C RBRACKET

571834
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

M C14 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
name: tetradecanoyl-acp
initial concentration: NaN
initial amount: NaN
in compartment: 570138
is: myrsACP
is: C05761
constant: false
is: MYRISTOYL-ACP

M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET P RBRACKET
type: Species
constant: false
has only substance units: false
name: protocatechuate
initial concentration: NaN
is: 3,4-DIHYDROXYBENZOATE
initial amount: NaN
in compartment: 570114
is: C00230
boundary condition: false

R R221 DASH RXN
type: Reaction
fast: false
product: 579211
is: R221-RXN
reactant: 579175
product: 579199
reversible: true
reactant: 579187
notes: GENE_ASSOCIATION:
name: octanol dehydrogenase

579211
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

579175
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

579199
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 371 LBRACKET C RBRACKET

M CPD DASH 371 LBRACKET C RBRACKET
type: Species
is: C01545
in compartment: 570138
initial concentration: NaN
name: 1-octanal
constant: false
boundary condition: false
is: CPD-371
initial amount: NaN
has only substance units: false

579187
type: SpeciesReference
stoichiometry: 1.0
species: M OCTANOL LBRACKET C RBRACKET

M OCTANOL LBRACKET C RBRACKET
type: Species
name: octanol
in compartment: 570138
initial concentration: NaN
initial amount: NaN
has only substance units: false
is: OCTANOL
constant: false
boundary condition: false
is: C00756

M TRIACYLGLYCEROL LBRACKET C RBRACKET
type: Species
is: C00422
in compartment: 570138
boundary condition: false
constant: false
name: triacylglycerol
is: TRIACYLGLYCEROL
has only substance units: false
initial amount: NaN
initial concentration: NaN

M C18 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
is: 3hoctaACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxyoctadecanoyl-acp

R C14 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 598671
reactant: 598658
fast: false
is: ACOAD6f
reversible: false
is: ACYLCOADEHYDROG-RXN
product: 598683
name: acyl-coa dehydrogenase (c14:0)
reactant: 598645
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566

598671
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C14 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
constant: false
initial concentration: NaN
name: trans-tetradec-2-enoyl-acp
in compartment: 570138
is: tmrs2eACP
has only substance units: false
initial amount: NaN
boundary condition: false
is: C05760

598658
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET

M C14 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
name: tetradecanoyl-coa
initial concentration: NaN
initial amount: NaN
has only substance units: false
boundary condition: false
is: tdcoa
constant: false
is: C02593
in compartment: 570138
is: TETRADECANOYL-COA

598683
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

598645
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

601779
type: Reaction
reactant: 601791
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of chlorogenate

601791
type: SpeciesReference
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET E RBRACKET

M CHLOROGENATE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: C00852
is: CHLOROGENATE
initial amount: NaN
initial concentration: NaN
constant: false
name: chlorogenate
has only substance units: false
in compartment: 570126

R ASPARTATEKIN DASH RXN
type: Reaction
is: ASPARTATEKIN-RXN
product: 600860
reactant: 600824
reactant: 600836
name: aspartate kinase
is: ASPK
notes: GENE_ASSOCIATION: ACIAD1252
product: 600848
reversible: false
fast: false

600860
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

600824
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

600836
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

600848
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH BETA DASH ASPARTYL DASH P LBRACKET C RBRACKET

M L DASH BETA DASH ASPARTYL DASH P LBRACKET C RBRACKET
type: Species
name: l-aspartyl-4-p
initial concentration: NaN
is: L-BETA-ASPARTYL-P
initial amount: NaN
in compartment: 570138
has only substance units: false
is: C03082
constant: false
is: 4pasp
boundary condition: false

R UROGENIIISYN DASH RXN
type: Reaction
name: uroporphyrinogen-iii synthase
reversible: true
reactant: 588562
fast: false
notes: GENE_ASSOCIATION: ACIAD0287
product: 588586
product: 588574
is: UROGENIIISYN-RXN
is: UPP3S

588562
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROXYMETHYLBILANE LBRACKET C RBRACKET

M HYDROXYMETHYLBILANE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: HYDROXYMETHYLBILANE
is: hmbil
is: C01024
in compartment: 570138
initial concentration: NaN
name: hydroxymethylbilane
initial amount: NaN
has only substance units: false
constant: false

588586
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

588574
type: SpeciesReference
stoichiometry: 1.0
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET

571196
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-DELTA(1)-PYRROLINE_5-CARBOXYLATE

R 4 PERIOD 1 PERIOD 2 PERIOD 41 DASH RXN
type: Reaction
product: 577888
product: 577876
reactant: 577864
notes: GENE_ASSOCIATION: ACIAD1726
is: 4.1.2.41-RXN
fast: false
reversible: true
name: vanillin synthase

577888
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

577876
type: SpeciesReference
stoichiometry: 1.0
species: M VANILLIN LBRACKET C RBRACKET

M VANILLIN LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
constant: false
initial amount: NaN
is: VANILLIN
is: C00755
name: vanillin

577864
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH ETCETERA DASH HYDROXYPROPIONYL DASH COA LBRACKET C RBRACKET

M 4 DASH HYDROXY DASH ETCETERA DASH HYDROXYPROPIONYL DASH COA LBRACKET C RBRACKET
type: Species
in compartment: 570138
has only substance units: false
is: 4-HYDROXY-ETCETERA-HYDROXYPROPIONYL-COA
constant: false
initial concentration: NaN
is: C07303
boundary condition: false
initial amount: NaN
name: 4-hydroxy-3-methoxyphenyl-beta-hydroxypropionyl-coa

618176
type: Reaction
reactant: 618188
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of acetate

618188
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET E RBRACKET

M ACET LBRACKET E RBRACKET
type: Species
boundary condition: false
name: acetate
in compartment: 570126
has only substance units: false
is: ACET
is: ac
initial amount: NaN
constant: false
initial concentration: NaN
is: C00033

http://identifiers.org/biomodels.db/MODEL1949107276#R_C8_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
type: Reaction
product: 618296
reactant: 618284
reactant: 618272
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c8:0)

618296
type: SpeciesReference
stoichiometry: 1.0
species: 570679

570679
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 7-carboxy-3-hydroxyheptanoyl-coa

618284
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

618272
type: SpeciesReference
stoichiometry: 1.0
species: 570246

570246
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-7-carboxyhept-2-enoyl-coa

R RXNIM DASH 6092
type: Reaction
product: 573747
reversible: false
is: METB1
name: o-acylhomoserine sulfhydrylase
is: RXNIM-6092
fast: false
reactant: 573723
reactant: 573711
product: 573735
notes: GENE_ASSOCIATION: ACIAD2314

573747
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH CYSTATHIONINE LBRACKET C RBRACKET

M L DASH CYSTATHIONINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
boundary condition: false
is: cyst-L
is: L-CYSTATHIONINE
constant: false
is: C00542
initial amount: NaN
has only substance units: false
initial concentration: NaN
name: cystathionine

573723
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 667 LBRACKET C RBRACKET

M CPD DASH 667 LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
has only substance units: false
is: achms
is: C01077
in compartment: 570138
initial concentration: NaN
is: CPD-667
name: o-acetyl-l-homoserine
initial amount: NaN

573711
type: SpeciesReference
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET

M CYS LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
is: C00097
in compartment: 570138
initial amount: NaN
is: CYS
is: cys-L
has only substance units: false
constant: false
name: l-cysteine

573735
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

M ACET LBRACKET C RBRACKET
type: Species
name: acetate
initial concentration: NaN
has only substance units: false
in compartment: 570138
is: C00033
is: ac
initial amount: NaN
constant: false
boundary condition: false
is: ACET

R 2 DASH DEHYDROPANTOATE DASH REDUCT DASH RXN
type: Reaction
name: 2-dehydropantoate 2-reductase
reactant: 578549
is: 2-DEHYDROPANTOATE-REDUCT-RXN
product: 578573
reactant: 578537
fast: false
product: 578561
notes: GENE_ASSOCIATION: ACIAD3102
reversible: true
is: DPR

578549
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH PANTOATE LBRACKET C RBRACKET

M L DASH PANTOATE LBRACKET C RBRACKET
type: Species
constant: false
is: L-PANTOATE
has only substance units: false
initial concentration: NaN
boundary condition: false
is: pant-R
in compartment: 570138
initial amount: NaN
name: l-pantoate
is: C00522

578573
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

578537
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

578561
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH DEHYDROPANTOATE LBRACKET C RBRACKET

M 2 DASH DEHYDROPANTOATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
in compartment: 570138
name: 2-dehydropantoate
constant: false
boundary condition: false
initial concentration: NaN
is: 2dhp
is: 2-DEHYDROPANTOATE
is: C00966

R NACGLCTRANS DASH RXN
type: Reaction
is: NACGLCTRANS-RXN
product: 596237
notes: GENE_ASSOCIATION: ACIAD3517
reactant: 596201
fast: false
reversible: false
reactant: 596213
name: udp-n-acetylglucosamine:n-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase
is: UAGPT3
product: 596225

596237
type: SpeciesReference
stoichiometry: 1.0
species: M C6 LBRACKET C RBRACKET

M C6 LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial concentration: NaN
initial amount: NaN
boundary condition: false
constant: false
is: C05898
is: C6
name: undecaprenyl-pyrophosphoryl-murnac-(pentapeptide)-n-acetylglucosamine
is: uaagmda
has only substance units: false

596201
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET

596213
type: SpeciesReference
stoichiometry: 1.0
species: M C5 LBRACKET C RBRACKET

596225
type: SpeciesReference
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET

M UDP LBRACKET C RBRACKET
type: Species
name: udp
constant: false
initial concentration: NaN
boundary condition: false
is: C00015
in compartment: 570138
is: UDP
initial amount: NaN
has only substance units: false
is: udp

http://identifiers.org/biomodels.db/MODEL1949107276#R_C8_COLON_0_DASH_CARBOXY3HYDROXYCOA_DASH_DEHYDROGENASE_DASH_RXN
type: Reaction
product: 580894
reactant: 580882
reactant: 580870
is: RXNIM-6202
name: dicarboxylate hydroxyacyl-coa dehydrogenase (c8:0)
notes: GENE_ASSOCIATION: ACIAD1690
fast: false
product: 580906
reversible: false

580894
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

580882
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

580870
type: SpeciesReference
stoichiometry: 1.0
species: 570679

580906
type: SpeciesReference
stoichiometry: 1.0
species: 570992

570992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 7-carboxy-3-oxoheptanoyl-coa

R ABC DASH 13 DASH RXN
type: Reaction
reactant: 598791
fast: false
reactant: 598803
is: GLUabcpp
name: transport of l-glutamate [extraorganism;cytosol](primary active atp)
product: 598851
is: ABC-13-RXN
product: 598839
reactant: 598815
notes: GENE_ASSOCIATION: ACIAD2056 and ACIAD2058 and ACIAD2059 and ACIAD2061
reversible: false
product: 598827

598791
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET

M GLT LBRACKET E RBRACKET
type: Species
boundary condition: false
initial concentration: NaN
has only substance units: false
is: GLT
name: l-glutamate
is: glu-L
is: C00025
constant: false
initial amount: NaN
in compartment: 570126

598803
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

598851
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

598839
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

598815
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

598827
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R C12 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
fast: false
product: 594792
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c12:0)
reversible: false
product: 594804
reactant: 594768
is: ENOYL-ACP-REDUCT-NADH-RXN
is: EAR120x
reactant: 594780

594792
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET

M C12 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
is: ddcaACP
constant: false
is: LAUROYL-ACP
initial amount: NaN
name: dodecanoyl-acp
initial concentration: NaN
is: C05223
in compartment: 570138

594804
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

594768
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

594780
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R 1TRANSKETO DASH RXN
type: Reaction
reversible: true
is: TKT1
notes: GENE_ASSOCIATION: ACIAD2035
product: 577262
reactant: 577238
name: transketolase (ribose-5p)
reactant: 577250
fast: false
product: 577274
is: 1TRANSKETO-RXN

577262
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH SEDOHEPTULOSE DASH 7 DASH P LBRACKET C RBRACKET

M D DASH SEDOHEPTULOSE DASH 7 DASH P LBRACKET C RBRACKET
type: Species
is: C00281
initial concentration: NaN
boundary condition: false
has only substance units: false
in compartment: 570138
is: s7p
constant: false
is: D-SEDOHEPTULOSE-7-P
name: sedoheptulose-7-phosphate
initial amount: NaN

577238
type: SpeciesReference
stoichiometry: 1.0
species: M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: Species
is: XYLULOSE-5-PHOSPHATE
constant: false
has only substance units: false
name: xylulose-5-phosphate
initial amount: NaN
is: xu5p-D
boundary condition: false
initial concentration: NaN
in compartment: 570138
is: C00231

577250
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET

M RIBOSE DASH 5P LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
has only substance units: false
name: ribose-5-phosphate
initial concentration: NaN
is: r5p
is: C00117
is: RIBOSE-5P
initial amount: NaN
in compartment: 570138

577274
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

R RXNIM DASH 6210
type: Reaction
product: 611509
product: 611533
reactant: 611484
reactant: 611497
reactant: 611472
notes: GENE_ASSOCIATION: ACIAD1724
reversible: false
product: 611521
fast: false
is: RXNIM-6210
name: 3,4-dihydroxyphenylpropionate coa ligase

611509
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6118 LBRACKET C RBRACKET

611533
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

611484
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

611497
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

611472
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6116 LBRACKET C RBRACKET

M CPDIM DASH 6116 LBRACKET C RBRACKET
type: Species
is: CPDIM-6116
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3,4-dihydroxyphenylpropionate

611521
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R UNDECAPRENYL DASH DIPHOSPHATASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1642 or ACIAD0678
reactant: 590982
name: undecaprenyl-diphosphatase
product: 591007
is: UNDECAPRENYL-DIPHOSPHATASE-RXN
product: 590994
is: UDCPDP
reactant: 590970
reversible: false
fast: false

590982
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

591007
type: SpeciesReference
stoichiometry: 1.0
species: M UNDECAPRENYL DASH P LBRACKET C RBRACKET

M UNDECAPRENYL DASH P LBRACKET C RBRACKET
type: Species
is: udcpp
initial amount: NaN
boundary condition: false
has only substance units: false
is: C00348
in compartment: 570138
initial concentration: NaN
constant: false
name: undecaprenyl phosphate
is: UNDECAPRENYL-P

590994
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

590970
type: SpeciesReference
stoichiometry: 1.0
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET

M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
initial amount: NaN
is: C03543
in compartment: 570138
constant: false
name: undecaprenyl diphosphate
is: UNDECAPRENYL-DIPHOSPHATE
is: udcpdp
initial concentration: NaN

M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
in compartment: 570138
has only substance units: false
initial amount: NaN
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate
is: HYDROXY-METHYL-BUTENYL-DIP
is: h2mb4p
initial concentration: NaN
is: C11811

R NICOTINAMID DASH RXN
type: Reaction
product: 600091
notes: GENE_ASSOCIATION: ACIAD3584 or ACIAD1618
product: 600103
reversible: false
is: NNAM
reactant: 600079
reactant: 600067
fast: false
is: NICOTINAMID-RXN
name: nicotinamidase

600091
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

600103
type: SpeciesReference
stoichiometry: 1.0
species: M NIACINE LBRACKET C RBRACKET

M NIACINE LBRACKET C RBRACKET
type: Species
constant: false
is: nac
name: niacine
initial amount: NaN
in compartment: 570138
initial concentration: NaN
is: C00253
is: NIACINE
boundary condition: false
has only substance units: false

600079
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

600067
type: SpeciesReference
stoichiometry: 1.0
species: M NIACINAMIDE LBRACKET C RBRACKET

M NIACINAMIDE LBRACKET C RBRACKET
type: Species
constant: false
is: ncam
is: NIACINAMIDE
boundary condition: false
has only substance units: false
name: niacinamide
initial concentration: NaN
in compartment: 570138
is: C00153
initial amount: NaN

R PROLDEHYDROG DASH RXN
type: Reaction
product: 587144
reactant: 587120
product: 587156
fast: false
is: PROD2
is: PROLDEHYDROG-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1646
reactant: 587132
name: proline dehydrogenase

587144
type: SpeciesReference
stoichiometry: 1.0
species: 571196

587120
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

587156
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

587132
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET

570859
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: generic wax esters

607230
type: Reaction
product: 607254
reactant: 607242
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of ethylsalicylate [extraorganism;cytosol](passive)

607254
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET C RBRACKET

M CPDIM DASH 6112 LBRACKET C RBRACKET
type: Species
is: CPDIM-6112
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ethylsalicylate

607242
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET E RBRACKET

M CPDIM DASH 6112 LBRACKET E RBRACKET
type: Species
is: CPDIM-6112
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: ethylsalicylate

M C10 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
is: dcacoa
has only substance units: false
initial concentration: NaN
boundary condition: false
initial amount: NaN
in compartment: 570138
is: C05274
constant: false
name: decanoyl-coa

610654
type: Reaction
product: 610702
product: 610690
reactant: 610678
reactant: 610666
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: long chain aldehyde reductase (c18:1(c9))

610702
type: SpeciesReference
stoichiometry: 1.0
species: 570318

610690
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

610678
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

610666
type: SpeciesReference
stoichiometry: 1.0
species: 571220

571220
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enal

R 3PGAREARR DASH RXN
type: Reaction
product: 579055
reactant: 579042
notes: GENE_ASSOCIATION: ACIAD0256
is: 3PGAREARR-RXN
is: PGM
fast: false
reversible: true
name: phosphoglycerate mutase

579055
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH PG LBRACKET C RBRACKET

M 2 DASH PG LBRACKET C RBRACKET
type: Species
constant: false
is: 2pg
in compartment: 570138
boundary condition: false
is: 2-PG
is: C00631
has only substance units: false
name: 2-phosphoglycerate
initial concentration: NaN
initial amount: NaN

579042
type: SpeciesReference
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET

M G3P LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: 3pg
in compartment: 570138
constant: false
name: 3-phosphoglycerate
is: G3P
is: C00197
has only substance units: false
initial amount: NaN
boundary condition: false

M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET E RBRACKET
type: Species
is: 4-HYDROXY-BENZYL-ALCOHOL
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: 4-hydroxybenzyl alcohol

M FE PLUS 2 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
constant: false
is: FE+2
initial amount: NaN
is: C00023
in compartment: 570138
has only substance units: false
boundary condition: false
name: fe+2
is: fe2

M UDP DASH OHMYR DASH GLUCOSAMINE LBRACKET C RBRACKET
type: Species
name: udp-3-o-(3-hydroxymyristoyl)glucosamine
is: C06022
has only substance units: false
initial concentration: NaN
constant: false
in compartment: 570138
initial amount: NaN
boundary condition: false
is: UDP-OHMYR-GLUCOSAMINE
is: u3hga

M CAFFEATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
initial concentration: NaN
is: CAFFEATE
name: caffeate
in compartment: 570138
is: C01481
boundary condition: false
has only substance units: false

613955
type: Reaction
reactant: 613967
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of no3-

613967
type: SpeciesReference
stoichiometry: 1.0
species: M NITRATE LBRACKET E RBRACKET

M NITRATE LBRACKET E RBRACKET
type: Species
is: NITRATE
initial amount: NaN
boundary condition: false
in compartment: 570126
is: no3
name: no3-
is: C00244
initial concentration: NaN
has only substance units: false
constant: false

M LIPID DASH IV DASH A LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
name: lipid iv(a)
has only substance units: false
is: LIPID-IV-A
constant: false
is: C04919
initial amount: NaN
is: lipidA
initial concentration: NaN

R C16 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
product: 572026
reversible: false
name: acyl coa transferase (c16:0)
fast: false
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 572002
reactant: 571990
product: 572038
is: FACOAL160t2pp
is: ACYLCOASYN-RXN
reactant: 571978
product: 572014

572026
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

572002
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

571990
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

572038
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET

M C16 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
in compartment: 570138
constant: false
has only substance units: false
name: hexadecanoyl-coa
is: C00154
initial concentration: NaN
is: PALMITYL-COA
is: pmtcoa

571978
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET

572014
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R PROLINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reactant: 605777
fast: false
is: PROTRS
product: 605813
reversible: false
is: PROLINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD0782
product: 605837
name: proline--trna ligase
reactant: 605789
product: 605825
reactant: 605801

605777
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET

605813
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

605837
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

605789
type: SpeciesReference
stoichiometry: 1.0
species: M PRO DASH TRNAS LBRACKET C RBRACKET

M PRO DASH TRNAS LBRACKET C RBRACKET
type: Species
has only substance units: false
in compartment: 570138
initial amount: NaN
initial concentration: NaN
is: C01649
constant: false
boundary condition: false
is: trnapro
name: proline trna
is: PRO-TRNAS

605825
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH PRO DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH PRO DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
constant: false
initial concentration: NaN
in compartment: 570138
is: protrna
name: charged proline trna
initial amount: NaN
is: CHARGED-PRO-TRNAS
is: C02702

605801
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R NICONUCADENYLYLTRAN DASH RXN
type: Reaction
product: 612314
notes: GENE_ASSOCIATION: ACIAD2606
is: NNATr
reversible: false
is: NICONUCADENYLYLTRAN-RXN
name: nicotinate-nucleotide adenylyltransferase
product: 612302
fast: false
reactant: 612290
reactant: 612278

612314
type: SpeciesReference
stoichiometry: 1.0
species: M DEAMIDO DASH NAD LBRACKET C RBRACKET

M DEAMIDO DASH NAD LBRACKET C RBRACKET
type: Species
name: deamido-nad
in compartment: 570138
initial amount: NaN
has only substance units: false
constant: false
is: DEAMIDO-NAD
is: dnad
is: C00857
initial concentration: NaN
boundary condition: false

612302
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

612290
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

612278
type: SpeciesReference
stoichiometry: 1.0
species: 571064

571064
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: NICOTINATE_NUCLEOTIDE

M GLYCERATE LBRACKET C RBRACKET
type: Species
is: glyc-R
is: C00258
initial concentration: NaN
initial amount: NaN
boundary condition: false
constant: false
in compartment: 570138
is: GLYCERATE
name: glycerate
has only substance units: false

M C12 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
is: C05756
in compartment: 570138
boundary condition: false
initial amount: NaN
is: 3oddecACP
name: 3-oxododecanoyl-acp

M D DASH ALANINE LBRACKET E RBRACKET
type: Species
in compartment: 570126
boundary condition: false
initial concentration: NaN
has only substance units: false
name: d-alanine
constant: false
initial amount: NaN
is: D-ALANINE
is: ala-D
is: C00133

M 1 DASH AMINO DASH PROPAN DASH 2 DASH ONE DASH 3 DASH PHOSPHATE LBRACKET C RBRACKET
type: Species
is: 1-AMINO-PROPAN-2-ONE-3-PHOSPHATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 1-amino-propan-2-one-3-phosphate

R TRANS DASH RXNIM DASH 5736
type: Reaction
fast: false
product: 599550
notes: GENE_ASSOCIATION: ACIAD2541
is: CSNt2pp
product: 599562
reactant: 599526
reactant: 599538
name: transport of cytosine [extraorganism;cytosol](secondary symport)
is: TRANS-RXNIM-5736
reversible: false

599550
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

599562
type: SpeciesReference
stoichiometry: 1.0
species: M CYTOSINE LBRACKET C RBRACKET

M CYTOSINE LBRACKET C RBRACKET
type: Species
is: CYTOSINE
initial concentration: NaN
is: C00380
initial amount: NaN
is: csn
constant: false
in compartment: 570138
has only substance units: false
boundary condition: false
name: cytosine

599526
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

599538
type: SpeciesReference
stoichiometry: 1.0
species: M CYTOSINE LBRACKET E RBRACKET

M CYTOSINE LBRACKET E RBRACKET
type: Species
in compartment: 570126
is: csn
constant: false
has only substance units: false
is: C00380
initial amount: NaN
boundary condition: false
name: cytosine
is: CYTOSINE
initial concentration: NaN

R C16 COLON 1 LPAREN C7 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 610521
name: hydroxyacyl-coa dehydrogenase (c16:1(c7))
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
is: OHACYL-COA-DEHYDROG-RXN
product: 610508
reversible: false
fast: false
reactant: 610496
reactant: 610484

610521
type: SpeciesReference
stoichiometry: 1.0
species: 570691

570691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxohexadec-7-enoyl-coa

610508
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

610496
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

610484
type: SpeciesReference
stoichiometry: 1.0
species: 570727

570727
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyhexadec-7-enoyl-coa

570342
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: TRIACYLGLYCEROL_W

R TRANS DASH RXN DASH PHE
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1343 or ACIAD2969
fast: false
reactant: 588706
reversible: true
is: PHEt2rpp
is: TRANS-RXNIM-5919
product: 588718
name: transport of l-phenylalanine [extraorganism;cytosol](secondary symport)
product: 588730
reactant: 588694

588706
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

588718
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

588730
type: SpeciesReference
stoichiometry: 1.0
species: M PHE LBRACKET C RBRACKET

588694
type: SpeciesReference
stoichiometry: 1.0
species: M PHE LBRACKET E RBRACKET

M PHE LBRACKET E RBRACKET
type: Species
constant: false
has only substance units: false
is: C00079
is: phe-L
name: l-phenylalanine
initial amount: NaN
in compartment: 570126
is: PHE
initial concentration: NaN
boundary condition: false

R C10 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
product: 585905
reversible: false
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
fast: false
name: enoyl-coa hydratase (c10:0)
is: ENOYL-COA-HYDRAT-RXN
reactant: 585893
is: ECOAH4
reactant: 585881

585905
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

585893
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

585881
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C10 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
is: dc2coa
constant: false
initial amount: NaN
in compartment: 570138
initial concentration: NaN
name: trans-dec-2-enoyl-coa
is: C05275
has only substance units: false
boundary condition: false

M CPD DASH 592 LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
is: CPD-592
in compartment: 570138
name: 4-guanidinobutanoate
is: 4gudbutn
is: C01035
constant: false
initial amount: NaN
initial concentration: NaN

R DUMP DASH NUCLEOTIDASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
product: 599922
reversible: false
product: 599934
fast: false
is: RXNIM-6193
reactant: 599898
is: NTD1
reactant: 599910
name: dump nucleotidase

599922
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

599934
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYURIDINE LBRACKET C RBRACKET

M DEOXYURIDINE LBRACKET C RBRACKET
type: Species
is: C00526
initial amount: NaN
has only substance units: false
constant: false
is: duri
is: DEOXYURIDINE
in compartment: 570138
initial concentration: NaN
boundary condition: false
name: deoxyuridine

599898
type: SpeciesReference
stoichiometry: 1.0
species: M DUMP LBRACKET C RBRACKET

M DUMP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
name: dump
boundary condition: false
is: C00365
is: DUMP
constant: false
is: dump
has only substance units: false
initial amount: NaN

599910
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M DAMP LBRACKET C RBRACKET
type: Species
name: damp
is: DAMP
boundary condition: false
initial amount: NaN
in compartment: 570138
is: damp
initial concentration: NaN
constant: false
is: C00360
has only substance units: false

R 6 DASH CARBOXYHEXANOATE DASH DASH COA DASH LIGASE DASH RXN
type: Reaction
reactant: 579476
reactant: 579488
is: CHCOAL
reactant: 579500
product: 579537
name: 6-carboxyhexanoate--coa ligase
fast: false
product: 579525
is: 6-CARBOXYHEXANOATE--COA-LIGASE-RXN
product: 579513
reversible: true
notes: GENE_ASSOCIATION: ACIAD1826

579476
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

579488
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

579500
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET C RBRACKET

579537
type: SpeciesReference
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET

579525
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

579513
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R TRANS DASH RXN DASH GLUTARATE
type: Reaction
reversible: true
fast: false
notes: GENE_ASSOCIATION: ACIAD1694
product: 600223
product: 600235
reactant: 600211
is: TRANS-RXNIM-5911
reactant: 600199
name: transport of glutarate [extraorganism;cytosol](secondary symport)

600223
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

600235
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARATE LBRACKET C RBRACKET

M GLUTARATE LBRACKET C RBRACKET
type: Species
name: glutarate
constant: false
has only substance units: false
initial concentration: NaN
is: C00489
boundary condition: false
in compartment: 570138
initial amount: NaN
is: GLUTARATE

600211
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

600199
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARATE LBRACKET E RBRACKET

M GLUTARATE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
is: C00489
is: GLUTARATE
constant: false
name: glutarate
initial amount: NaN
in compartment: 570126
has only substance units: false
boundary condition: false

M GLT DASH TRNAS LBRACKET C RBRACKET
type: Species
name: glutamate trna
is: C01641
constant: false
is: GLT-TRNAS
boundary condition: false
has only substance units: false
initial concentration: NaN
is: trnaglu
initial amount: NaN
in compartment: 570138

M CHARGED DASH ILE DASH TRNAS LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
is: CHARGED-ILE-TRNAS
is: iletrna
has only substance units: false
is: C03127
initial concentration: NaN
initial amount: NaN
boundary condition: false
name: charged isoleucine trna

R TRANS DASH RXN DASH CAFFEATE DASH PERIP
type: Reaction
product: 584197
reactant: 584173
is: TRANS-RXNIM-5915
name: transport of caffeate [periplasm;cytosol](secondary symport)
product: 584209
notes: GENE_ASSOCIATION: ACIAD1709
reactant: 584185
fast: false
reversible: true

584197
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET C RBRACKET

584173
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET P RBRACKET

584209
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

584185
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

M CHARGED DASH THR DASH TRNAS LBRACKET C RBRACKET
type: Species
name: charged threonine trna
in compartment: 570138
initial amount: NaN
initial concentration: NaN
boundary condition: false
is: thrtrna
constant: false
has only substance units: false
is: C02992
is: CHARGED-THR-TRNAS

M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
has only substance units: false
name: oxidized thioredoxin
initial concentration: NaN
is: OX-THIOREDOXIN-MONOMER
is: trdox
is: C00343
initial amount: NaN
in compartment: 570138

M C6 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
is: C05747
constant: false
initial amount: NaN
name: 3-hydroxyhexanoyl-acp
has only substance units: false
is: 3hhexACP
initial concentration: NaN
in compartment: 570138
boundary condition: false

M GLUTACONYL DASH COA LBRACKET C RBRACKET
type: Species
is: GLUTACONYL-COA
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: glutaconyl-coa

613049
type: Reaction
product: 613109
reactant: 613061
reversible: true
reactant: 613085
name: generic acyl acp of phospholipids assembly
fast: false
reactant: 613073
notes: GENE_ASSOCIATION:
reactant: 613097

613109
type: SpeciesReference
stoichiometry: 1.0
species: 570631

570631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-ACP_PL

613061
type: SpeciesReference
stoichiometry: 0.2
species: 570559

613085
type: SpeciesReference
stoichiometry: 0.6
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET

M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET
type: Species
is: OLEOYL-ACYL-CARRIER-PROTEIN
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enoyl-acp

613073
type: SpeciesReference
stoichiometry: 0.1
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET

M C18 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: STEAROYL-ACYL-CARRIER-PROTEIN
in compartment: 570138
has only substance units: false
constant: false
boundary condition: false
initial concentration: NaN
name: octadenoyl-acp
is: ocdcaACP

613097
type: SpeciesReference
stoichiometry: 0.1
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET

R NITRILE DASH HYDRATASE DASH RXN
type: Reaction
product: 593548
reactant: 593536
reactant: 593524
notes: GENE_ASSOCIATION: ACIAD1615 and ACIAD1616
is: NITRILE-HYDRATASE-RXN
fast: false
reversible: false
name: propane nitrile hydratase

593548
type: SpeciesReference
stoichiometry: 1.0
species: M PROPANAMIDE LBRACKET C RBRACKET

M PROPANAMIDE LBRACKET C RBRACKET
type: Species
is: CPDIM-6119
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: propane amide

593536
type: SpeciesReference
stoichiometry: 1.0
species: M PROPANENITRILE LBRACKET C RBRACKET

M PROPANENITRILE LBRACKET C RBRACKET
type: Species
is: CPDIM-6120
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: propane nitrile

593524
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R MALATE DASH DEH DASH RXN
type: Reaction
reversible: true
is: MALATE-DEH-RXN
notes: GENE_ASSOCIATION: ACIAD3155
reactant: 598537
reactant: 598549
name: malate dehydrogenase
product: 598561
product: 598573
fast: false
is: MDH

598537
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

M MAL LBRACKET C RBRACKET
type: Species
boundary condition: false
is: C00149
initial concentration: NaN
in compartment: 570138
is: MAL
is: mal-L
name: malate
has only substance units: false
initial amount: NaN
constant: false

598549
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

598561
type: SpeciesReference
stoichiometry: 1.0
species: 570883

570883
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: OXALACETIC_ACID

598573
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R ACETOOHBUTREDUCTOISOM DASH RXN
type: Reaction
reactant: 615800
notes: GENE_ASSOCIATION: ACIAD3102
reversible: true
fast: false
is: ACETOOHBUTREDUCTOISOM-RXN
is: KARA2
product: 615824
reactant: 615788
product: 615812
name: ketol-acid reductoisomerase

615800
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

615824
type: SpeciesReference
stoichiometry: 1.0
species: M 1 DASH KETO DASH 2 DASH METHYLVALERATE LBRACKET C RBRACKET

M 1 DASH KETO DASH 2 DASH METHYLVALERATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
boundary condition: false
is: 1-KETO-2-METHYLVALERATE
initial concentration: NaN
initial amount: NaN
has only substance units: false
is: C06007
is: 23dhmp
name: 2,3-dihydroxy-3-methylvalerate

615788
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH ACETO DASH 2 DASH HYDROXY DASH BUTYRATE LBRACKET C RBRACKET

M 2 DASH ACETO DASH 2 DASH HYDROXY DASH BUTYRATE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: 2ahbut
has only substance units: false
is: 2-ACETO-2-HYDROXY-BUTYRATE
in compartment: 570138
initial amount: NaN
is: C06006
constant: false
name: 2-aceto-2-hydroxy-butyrate
initial concentration: NaN

615812
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R DCTP DASH DEAM DASH RXN
type: Reaction
name: dctp deaminase
fast: false
is: DCTP-DEAM-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD0776
product: 607904
reactant: 607880
reactant: 607892
is: DCTPD
product: 607916

607904
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

607880
type: SpeciesReference
stoichiometry: 1.0
species: M DCTP LBRACKET C RBRACKET

M DCTP LBRACKET C RBRACKET
type: Species
is: dctp
is: C00458
in compartment: 570138
initial concentration: NaN
has only substance units: false
name: dctp
initial amount: NaN
constant: false
is: DCTP
boundary condition: false

607892
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

607916
type: SpeciesReference
stoichiometry: 1.0
species: M DUTP LBRACKET C RBRACKET

M DUTP LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
is: C00460
in compartment: 570138
initial concentration: NaN
is: DUTP
boundary condition: false
constant: false
is: dutp
name: dutp

R LYSINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reactant: 582617
product: 582666
fast: false
product: 582678
reactant: 582630
reversible: false
reactant: 582642
product: 582654
notes: GENE_ASSOCIATION: ACIAD1069
is: LYSINE--TRNA-LIGASE-RXN
name: lysine--trna ligase
is: LYSTRS

582617
type: SpeciesReference
stoichiometry: 1.0
species: M LYS DASH TRNAS LBRACKET C RBRACKET

M LYS DASH TRNAS LBRACKET C RBRACKET
type: Species
is: C01646
is: LYS-TRNAS
initial amount: NaN
has only substance units: false
in compartment: 570138
constant: false
initial concentration: NaN
is: trnalys
boundary condition: false
name: lysine trna

582666
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

582678
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

582630
type: SpeciesReference
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET

582642
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

582654
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET

R RIBOFLAVINKIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0023
reactant: 603898
fast: false
reversible: true
reactant: 603910
is: RIBOFLAVINKIN-RXN
name: riboflavin kinase
product: 603934
product: 603922
is: RBFK

603898
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOFLAVIN LBRACKET C RBRACKET

M RIBOFLAVIN LBRACKET C RBRACKET
type: Species
is: ribflv
has only substance units: false
is: RIBOFLAVIN
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
initial concentration: NaN
is: C00255
name: riboflavin

603910
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

603934
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

603922
type: SpeciesReference
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET

R C8 COLON 0 DASH COA DASH THIOLASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
fast: false
reactant: 594636
product: 594660
product: 594672
reversible: false
reactant: 594648
is: THIOESTER-RXN
is: FACOAE80
name: acyl-coa thiolase (c8:0)

594636
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594660
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET

M C8 COLON 0 LBRACKET C RBRACKET
type: Species
constant: false
is: CPD-195
in compartment: 570138
initial amount: NaN
boundary condition: false
is: octa
initial concentration: NaN
has only substance units: false
is: C06423
name: octanoate

594672
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

594648
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET

M C8 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
constant: false
is: occoa
initial concentration: NaN
has only substance units: false
in compartment: 570138
is: C01944
initial amount: NaN
name: octanoyl-coa
is: CPD-196
boundary condition: false

M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
name: l-aspartate-semialdehyde
is: L-ASPARTATE-SEMIALDEHYDE
in compartment: 570138
has only substance units: false
constant: false
initial amount: NaN
is: C00441
is: aspsa

M CPDIM DASH 6098 LBRACKET C RBRACKET
type: Species
is: CPDIM-6098
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-hydroxyphenyl-beta-hydroxypropionyl-coa

M FARNESYL DASH PP LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
name: trans, trans-farnesyl diphosphate
is: C00448
initial concentration: NaN
is: FARNESYL-PP
in compartment: 570138
is: frdp

R CARBOXYLESTERASE DASH RXN
type: Reaction
product: 571292
name: carboxylesterase
reactant: 571268
notes: GENE_ASSOCIATION: ACIAD1134 or ACIAD3648
reactant: 571256
reversible: false
product: 571280
is: CARBOXYLESTERASE-RXN
fast: false

571292
type: SpeciesReference
stoichiometry: 1.0
species: 570234

570234
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-OH_WAX

571268
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

571256
type: SpeciesReference
stoichiometry: 1.0
species: 570859

571280
type: SpeciesReference
stoichiometry: 1.0
species: 570907

570907
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: AFATTYACID_WAX

R GLUCONOLACT DASH RXN
type: Reaction
reactant: 591596
reactant: 591608
notes: GENE_ASSOCIATION: ACIAD2819 or SPONT SPONTANEOUS: TRUE
fast: false
reversible: true
is: GLUCONOLACT-RXN
product: 591620
is: GLCDpp
name: gluconolactonase

591596
type: SpeciesReference
stoichiometry: 1.0
species: M GLC DASH D DASH LACTONE LBRACKET P RBRACKET

M GLC DASH D DASH LACTONE LBRACKET P RBRACKET
type: Species
is: GLC-D-LACTONE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570114
name: glucono-delta-lactone

591608
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET

M WATER LBRACKET P RBRACKET
type: Species
in compartment: 570114
constant: false
initial concentration: NaN
initial amount: NaN
boundary condition: false
has only substance units: false
is: h2o
is: C00001
name: h2o
is: WATER

591620
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET P RBRACKET

M FUM LBRACKET E RBRACKET
type: Species
has only substance units: false
is: fum
constant: false
initial amount: NaN
in compartment: 570126
is: FUM
name: fumarate
is: C00122
initial concentration: NaN
boundary condition: false

M ADIPATE LBRACKET C RBRACKET
type: Species
name: adipate
has only substance units: false
is: C06104
initial concentration: NaN
constant: false
in compartment: 570138
is: ADIPATE
boundary condition: false
initial amount: NaN

M ERYTHRONATE DASH 4P LBRACKET C RBRACKET
type: Species
is: ERYTHRONATE-4P
initial concentration: NaN
in compartment: 570138
name: erythronate-4-phosphate
has only substance units: false
constant: false
is: C03393
boundary condition: false
initial amount: NaN
is: 4per

570835
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PROTOPORPHYRIN_IX

577551
type: Reaction
reactant: 577563
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethylsalicylate

577563
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET E RBRACKET

R TRANS DASH RXNIM DASH 5773
type: Reaction
is: TRANS-RXNIM-5773
notes: GENE_ASSOCIATION: ACIAD1911
reversible: true
reactant: 585845
product: 585857
product: 585869
fast: false
reactant: 585833
name: transport of no3- [extraorganism;cytosol](secondary symport)

585845
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

585857
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

585869
type: SpeciesReference
stoichiometry: 1.0
species: M NITRATE LBRACKET C RBRACKET

M NITRATE LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C00244
boundary condition: false
initial amount: NaN
constant: false
name: no3-
is: NITRATE
is: no3
in compartment: 570138
initial concentration: NaN

585833
type: SpeciesReference
stoichiometry: 1.0
species: M NITRATE LBRACKET E RBRACKET

570174
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: phenyl sulfate

R MALIC DASH NAD DASH RXN
type: Reaction
is: MALIC-NAD-RXN
fast: false
name: malate dehydrogenase (oxaloacetate decarboxylating)
reversible: false
product: 583255
notes: GENE_ASSOCIATION: ACIAD0166
product: 583243
reactant: 583231
reactant: 583219
is: ME1
product: 583267

583255
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

583243
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

583231
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

583219
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

583267
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R RXN DASH 2425
type: Reaction
product: 588070
reactant: 588058
reactant: 588046
notes: GENE_ASSOCIATION: ACIAD1692
is: RXN-2425
fast: false
reversible: false
name: trans-2,3-dehydroadipyl-coa hydratase

588070
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH HYDROXYADIPYL DASH COA LBRACKET C RBRACKET

M 3 DASH HYDROXYADIPYL DASH COA LBRACKET C RBRACKET
type: Species
is: C14145
has only substance units: false
in compartment: 570138
initial concentration: NaN
name: 3-hydroxyadipyl-coa
boundary condition: false
is: 3-HYDROXYADIPYL-COA
initial amount: NaN
constant: false

588058
type: SpeciesReference
stoichiometry: 1.0
species: M TRANS DASH 23 DASH DEHYDROADIPYL DASH COA LBRACKET C RBRACKET

M TRANS DASH 23 DASH DEHYDROADIPYL DASH COA LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
is: C14144
initial concentration: NaN
in compartment: 570138
is: TRANS-23-DEHYDROADIPYL-COA
name: trans-2,3-dehydroadipyl-coa
constant: false
boundary condition: false

588046
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R SUCCARGDIHYDRO DASH RXN
type: Reaction
reactant: 586074
is: SADH
name: succinylarginine dihydrolase
product: 586086
fast: false
product: 586098
notes: GENE_ASSOCIATION: ACIAD1288
reactant: 586062
product: 586110
is: SUCCARGDIHYDRO-RXN
reversible: false

586074
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

586086
type: SpeciesReference
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET

586098
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

586062
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 421 LBRACKET C RBRACKET

M CPD DASH 421 LBRACKET C RBRACKET
type: Species
is: CPD-421
initial concentration: NaN
in compartment: 570138
boundary condition: false
has only substance units: false
is: C03296
is: sucarg
initial amount: NaN
constant: false
name: n2-succinyl-l-arginine

586110
type: SpeciesReference
stoichiometry: 1.0
species: M N2 DASH SUCCINYLORNITHINE LBRACKET C RBRACKET

M N2 DASH SUCCINYLORNITHINE LBRACKET C RBRACKET
type: Species
constant: false
is: C03415
is: N2-SUCCINYLORNITHINE
has only substance units: false
initial concentration: NaN
is: sucorn
in compartment: 570138
initial amount: NaN
boundary condition: false
name: n2-succinylornithine

M CPD DASH 592 LBRACKET E RBRACKET
type: Species
in compartment: 570126
has only substance units: false
is: CPD-592
name: 4-guanidinobutanoate
initial amount: NaN
boundary condition: false
is: C01035
initial concentration: NaN
is: 4gudbutn
constant: false

R OHMETHYLBILANESYN DASH RXN
type: Reaction
product: 603176
reactant: 603152
fast: false
notes: GENE_ASSOCIATION: ACIAD0286
is: OHMETHYLBILANESYN-RXN
is: HMBS
name: hydroxymethylbilane synthase
reactant: 603164
product: 603188
reversible: false

603176
type: SpeciesReference
stoichiometry: 4.0
species: M AMMONIUM LBRACKET C RBRACKET

603152
type: SpeciesReference
stoichiometry: 4.0
species: M PORPHOBILINOGEN LBRACKET C RBRACKET

M PORPHOBILINOGEN LBRACKET C RBRACKET
type: Species
is: ppbng
constant: false
name: porphobilinogen
is: PORPHOBILINOGEN
has only substance units: false
initial concentration: NaN
is: C00931
boundary condition: false
in compartment: 570138
initial amount: NaN

603164
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

603188
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROXYMETHYLBILANE LBRACKET C RBRACKET

M SO3 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
is: SO3
in compartment: 570138
constant: false
is: C00094
has only substance units: false
initial amount: NaN
is: so3
name: so3-2

M C8 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
name: 3-oxooctanoyl-coa
constant: false
in compartment: 570138
has only substance units: false
is: 3oocoa
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: C05267

R TRANS DASH RXN DASH 27
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0223
reactant: 611098
product: 611110
reactant: 611086
fast: false
is: SKMt2pp
reversible: false
name: transport of shikimate [periplasm;cytosol](secondary symport)
product: 611122
is: TRANS-RXN-27

611098
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

611110
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

611086
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET P RBRACKET

M SHIKIMATE LBRACKET P RBRACKET
type: Species
is: C00493
has only substance units: false
name: shikimate
is: skm
boundary condition: false
initial concentration: NaN
is: SHIKIMATE
initial amount: NaN
constant: false
in compartment: 570114

611122
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET C RBRACKET

M SHIKIMATE LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
initial amount: NaN
constant: false
has only substance units: false
name: shikimate
is: SHIKIMATE
is: skm
is: C00493
initial concentration: NaN

M C10 COLON 0 LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
boundary condition: false
is: C01571
initial concentration: NaN
has only substance units: false
is: CPD-3617
initial amount: NaN
name: decanoate
is: dca

M CHARGED DASH ARG DASH TRNAS LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: charged arginine trna
initial amount: NaN
has only substance units: false
is: argtrna
constant: false
boundary condition: false
is: CHARGED-ARG-TRNAS
initial concentration: NaN
is: C02163

R C18 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
is: ACYLCOASYN-RXN
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
product: 590029
reactant: 589993
product: 590005
fast: false
name: acyl coa transferase (c18:0)
product: 590017
reversible: false
reactant: 589981
is: FACOAL180t2pp
reactant: 589968

590029
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

589993
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

590005
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

590017
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH COA LBRACKET C RBRACKET

M C18 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
name: octadenoyl-coa
boundary condition: false
is: stcoa
in compartment: 570138
is: C00412
constant: false
initial amount: NaN
is: STEAROYL-COA

589981
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

589968
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET

M C18 COLON 0 LBRACKET C RBRACKET
type: Species
constant: false
is: ocdca
is: STEARIC ACID
initial concentration: NaN
boundary condition: false
name: octadenoate
is: C01530
initial amount: NaN
in compartment: 570138
has only substance units: false

R PEPCARBOX DASH RXN
type: Reaction
name: phosphoenolpyruvate carboxylase
fast: false
reversible: false
reactant: 613001
product: 613025
product: 613037
reactant: 613013
is: PEPCARBOX-RXN
notes: GENE_ASSOCIATION: ACIAD3627
is: PPC
reactant: 612989

613001
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

613025
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

613037
type: SpeciesReference
stoichiometry: 1.0
species: 570883

613013
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

612989
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET
type: Species
name: phosphoenolpyruvate
is: pep
initial amount: NaN
in compartment: 570138
has only substance units: false
initial concentration: NaN
constant: false
is: PHOSPHO-ENOL-PYRUVATE
is: C00074
boundary condition: false

R RXN0 DASH 363
type: Reaction
product: 596550
notes: GENE_ASSOCIATION: ACIAD2386
product: 596563
name: xanthosine hydrolase
is: XTSNH
reactant: 596538
reactant: 596526
fast: false
reversible: false
is: RXN0-363

596550
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET

M RIBOSE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: rib-D
name: ribose
has only substance units: false
is: C00121
boundary condition: false
in compartment: 570138
constant: false
is: RIBOSE
initial amount: NaN

596563
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET

M XANTHINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
boundary condition: false
is: C00385
is: xan
has only substance units: false
constant: false
initial amount: NaN
initial concentration: NaN
is: XANTHINE
name: xanthine

596538
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596526
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHOSINE LBRACKET C RBRACKET

R RXN DASH 7607
type: Reaction
product: 594007
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
is: NTD11
product: 593995
is: RXN-7607
fast: false
reactant: 593983
reversible: false
name: imp nucleotidase
reactant: 593971

594007
type: SpeciesReference
stoichiometry: 1.0
species: M INOSINE LBRACKET C RBRACKET

593995
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

593983
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

593971
type: SpeciesReference
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET

M IMP LBRACKET C RBRACKET
type: Species
is: IMP
constant: false
is: imp
initial amount: NaN
initial concentration: NaN
name: imp
is: C00130
boundary condition: false
has only substance units: false
in compartment: 570138

571028
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: N-ACETYLGLUTAMATE_SEMIALDEHYDE

R PDXJ DASH RXN
type: Reaction
reversible: true
reactant: 584329
notes: GENE_ASSOCIATION: ACIAD2577
is: PDXJ-RXN
product: 584341
fast: false
is: PDX5PS
product: 584365
product: 584353
reactant: 584317
name: pyridoxine 5'-phosphate synthase

584329
type: SpeciesReference
stoichiometry: 1.0
species: M 1 DASH AMINO DASH PROPAN DASH 2 DASH ONE DASH 3 DASH PHOSPHATE LBRACKET C RBRACKET

584341
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

584365
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

584353
type: SpeciesReference
stoichiometry: 1.0
species: M PYRIDOXINE DASH 5P LBRACKET C RBRACKET

M PYRIDOXINE DASH 5P LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: PYRIDOXINE-5P
boundary condition: false
in compartment: 570138
initial amount: NaN
is: pdx5p
name: pyridoxine-5'-phosphate
is: C00627
constant: false
has only substance units: false

584317
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET

M CPD DASH 470 LBRACKET C RBRACKET
type: Species
is: C03283
boundary condition: false
in compartment: 570138
is: CPD-470
name: l-2,4-diaminobutanoate
initial concentration: NaN
constant: false
has only substance units: false
initial amount: NaN

M THR LBRACKET C RBRACKET
type: Species
initial amount: NaN
name: l-threonine
is: C00188
constant: false
is: THR
has only substance units: false
initial concentration: NaN
in compartment: 570138
boundary condition: false
is: thr-L

M ACETYL DASH P LBRACKET C RBRACKET
type: Species
name: acetylphosphate
is: ACETYL-P
in compartment: 570138
constant: false
initial amount: NaN
is: C00227
initial concentration: NaN
is: actp
boundary condition: false
has only substance units: false

M 4 DASH FUMARYL DASH ACETOACETATE LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
constant: false
initial concentration: NaN
name: 4-fumaryl-acetoacetate
is: C01061
is: 4-FUMARYL-ACETOACETATE
in compartment: 570138
initial amount: NaN

R INORGPYROPHOSPHAT DASH RXN
type: Reaction
name: inorganic pyrophosphatase
reactant: 586170
product: 586194
is: INORGPYROPHOSPHAT-RXN
notes: GENE_ASSOCIATION: ACIAD0239
fast: false
is: PPA
reversible: false
reactant: 586182

586170
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

586194
type: SpeciesReference
stoichiometry: 2.0
species: M PI LBRACKET C RBRACKET

586182
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R PGLUCONDEHYDRAT DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0542
is: EDD
is: PGLUCONDEHYDRAT-RXN
fast: false
product: 618743
name: phosphogluconate dehydratase
product: 618731
reactant: 618719
reversible: true

618743
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

618731
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH DEOXY DASH 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET

M 2 DASH KETO DASH 3 DASH DEOXY DASH 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
type: Species
is: C04442
is: 2ddg6p
initial amount: NaN
is: 2-KETO-3-DEOXY-6-P-GLUCONATE
has only substance units: false
constant: false
in compartment: 570138
initial concentration: NaN
boundary condition: false
name: 2-keto-3-deoxy-6-phospho-gluconate

618719
type: SpeciesReference
stoichiometry: 1.0
species: M 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET

M 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: 6-P-GLUCONATE
constant: false
in compartment: 570138
has only substance units: false
is: C00345
name: 6-phospho-gluconate
initial amount: NaN
is: 6pgc
initial concentration: NaN

M PQQ LBRACKET P RBRACKET
type: Species
is: PQQ
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570114
name: pqq

R GTP DASH CYCLOHYDRO DASH I DASH RXN
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD2470
reactant: 608906
name: gtp cyclohydrolase i
product: 608942
is: GTPCI
is: GTP-CYCLOHYDRO-I-RXN
reactant: 608918
product: 608930
fast: false

608906
type: SpeciesReference
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET

M GTP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
is: gtp
is: GTP
is: C00044
name: gtp
boundary condition: false
initial amount: NaN
constant: false
in compartment: 570138

608942
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P3 LBRACKET C RBRACKET

M DIHYDRONEOPTERIN DASH P3 LBRACKET C RBRACKET
type: Species
is: C04895
in compartment: 570138
name: dihydroneopterin triphosphate
constant: false
boundary condition: false
is: ahdt
initial concentration: NaN
initial amount: NaN
has only substance units: false
is: DIHYDRONEOPTERIN-P3

608918
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

608930
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET

M FORMATE LBRACKET C RBRACKET
type: Species
is: for
initial concentration: NaN
name: formate
in compartment: 570138
has only substance units: false
initial amount: NaN
constant: false
is: C00058
is: FORMATE
boundary condition: false

R C18 COLON 1 LPAREN C9 RPAREN DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
reactant: 604644
reversible: false
notes: GENE_ASSOCIATION: ACIAD0871
is: 3-OXOACYL-ACP-REDUCT-RXN
reactant: 604632
product: 604656
product: 604668
name: 3oxoacyl-acp reductase (c18:1(c9))
fast: false

604644
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

604632
type: SpeciesReference
stoichiometry: 1.0
species: 570595

570595
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxooctadec-9-enoyl-acp

604656
type: SpeciesReference
stoichiometry: 1.0
species: 570871

570871
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyoctadec-9-enoyl-acp

604668
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

583159
type: Reaction
product: 583183
reactant: 583171
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: conversion to "mass" metabolite of wax

583183
type: SpeciesReference
stoichiometry: 0.5013
species: 571136

571136
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: WAX-ESTER_W

583171
type: SpeciesReference
stoichiometry: 1.0
species: 570859

R C16 COLON 1 LPAREN C7 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
reactant: 600572
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 600596
name: 3oxoacyl-acp synthase (c16:1(c7))
is: 3-OXOACYL-ACP-SYNTH-RXN
product: 600584
reactant: 600560
product: 600608
reversible: false
fast: false

600572
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

600596
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

600584
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

600560
type: SpeciesReference
stoichiometry: 1.0
species: 570667

570667
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-tetradec-4-enoyl-acp

600608
type: SpeciesReference
stoichiometry: 1.0
species: 570282

570282
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxohexadec-7-enoyl-acp

598936
type: Reaction
product: 598984
product: 598972
reactant: 598960
reactant: 598948
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: acyl-acp hydrolase (c18:1(c9))

598984
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

598972
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET
type: Species
is: OLEATE-CPD
has only substance units: false
initial concentration: NaN
constant: false
is: C00712
in compartment: 570138
boundary condition: false
name: cis-octadec-9-enoate
initial amount: NaN

598960
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

598948
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET

R PEPSYNTH DASH RXN
type: Reaction
reactant: 577322
reactant: 577334
reactant: 577310
name: pyruvate,water dikinase
product: 577358
notes: GENE_ASSOCIATION: ACIAD2423
product: 577346
is: PPS
product: 577370
reversible: false
is: PEPSYNTH-RXN
fast: false

577322
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

577334
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

577310
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

577358
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

577346
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

577370
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

R GLUTCYSLIG DASH RXN
type: Reaction
reactant: 576852
notes: GENE_ASSOCIATION: ACIAD3549
product: 576912
product: 576900
reactant: 576864
is: GLUTCYSLIG-RXN
product: 576888
fast: false
name: glutamate--cysteine ligase
reactant: 576876
is: GLUCYS
reversible: false

576852
type: SpeciesReference
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET

576912
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

576900
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH GAMMA DASH GLUTAMYLCYSTEINE LBRACKET C RBRACKET

M L DASH GAMMA DASH GLUTAMYLCYSTEINE LBRACKET C RBRACKET
type: Species
is: L-GAMMA-GLUTAMYLCYSTEINE
is: glucys
in compartment: 570138
has only substance units: false
constant: false
name: l-gamma-glutamylcysteine
initial concentration: NaN
boundary condition: false
is: C00669
initial amount: NaN

576864
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

576888
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

576876
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R RXN DASH 3641
type: Reaction
name: beta-ketoadipyl coa thiolase
reactant: 578272
product: 578296
reactant: 578260
notes: GENE_ASSOCIATION: ACIAD1450 or ACIAD1689 or ACIAD1706
is: RXN-3641
product: 578284
reversible: false
fast: false

578272
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

578296
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

578260
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPYL DASH COA LBRACKET C RBRACKET

M 3 DASH KETO DASH ADIPYL DASH COA LBRACKET C RBRACKET
type: Species
is: C02232
boundary condition: false
initial amount: NaN
has only substance units: false
constant: false
initial concentration: NaN
is: 3-KETO-ADIPYL-COA
name: 3-ketoadipyl-coa
in compartment: 570138

578284
type: SpeciesReference
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET

M SUC DASH COA LBRACKET C RBRACKET
type: Species
constant: false
initial amount: NaN
is: C00091
initial concentration: NaN
is: SUC-COA
is: succoa
has only substance units: false
name: succinyl-coa
in compartment: 570138
boundary condition: false

R DAHPSYN DASH RXN
type: Reaction
reactant: 598067
reactant: 598055
is: DAHPSYN-RXN
name: 2-dehydro-3-deoxyphosphoheptonate aldolase
notes: GENE_ASSOCIATION: ACIAD2330 or ACIAD1878
reactant: 598079
fast: false
reversible: false
is: DDPA
product: 598091
product: 598103

598067
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

598055
type: SpeciesReference
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET

M ERYTHROSE DASH 4P LBRACKET C RBRACKET
type: Species
is: ERYTHROSE-4P
is: e4p
initial amount: NaN
initial concentration: NaN
constant: false
has only substance units: false
is: C00279
boundary condition: false
name: erythrose-4-phosphate
in compartment: 570138

598079
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

598091
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

598103
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEOXY DASH D DASH ARABINO DASH HEPTULOSONATE DASH 7 DASH P LBRACKET C RBRACKET

M 3 DASH DEOXY DASH D DASH ARABINO DASH HEPTULOSONATE DASH 7 DASH P LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P
is: C04691
name: 3-deoxy-d-arabino-heptulosonate-7-phosphate
is: 2dda7p
boundary condition: false
constant: false
initial concentration: NaN
in compartment: 570138
has only substance units: false

M ACETALD LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
boundary condition: false
is: ACETALD
initial amount: NaN
is: C00084
initial concentration: NaN
name: acetaldehyde
in compartment: 570138
is: acald

R CO2 DASH DISS DASH RXN
type: Reaction
reversible: true
product: 596695
reactant: 596671
is: HCO3E
reactant: 596659
product: 596683
fast: false
name: dissolution of carbon dioxide
notes: GENE_ASSOCIATION: SPONT SPONTANEOUS: TRUE

596695
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

596671
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596659
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

596683
type: SpeciesReference
stoichiometry: 1.0
species: M HCO3 LBRACKET C RBRACKET

M HCO3 LBRACKET C RBRACKET
type: Species
is: HCO3
boundary condition: false
constant: false
initial concentration: NaN
initial amount: NaN
is: hco3
is: C00288
has only substance units: false
in compartment: 570138
name: hco3-

M CPD DASH 205 LBRACKET E RBRACKET
type: Species
in compartment: 570126
initial amount: NaN
initial concentration: NaN
has only substance units: false
constant: false
is: C02656
name: pimelate
is: pime
is: CPD-205
boundary condition: false

M KDO2 DASH LIPID DASH IVA LBRACKET C RBRACKET
type: Species
is: KDO2-LIPID-IVA
constant: false
name: kdo2-lipid iva
initial amount: NaN
is: kdo2lipid4
boundary condition: false
is: C06025
in compartment: 570138
has only substance units: false
initial concentration: NaN

574902
type: Reaction
reactant: 574914
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of pimelate

574914
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET E RBRACKET

R ATP DASH DRAIN DASH RXN
type: Reaction
product: 572146
is: ATPM
reactant: 572110
notes: GENE_ASSOCIATION:
product: 572134
fast: false
reactant: 572098
name: atp maintenance requirement
reversible: false
product: 572122

572146
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

572110
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

572134
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

572098
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

572122
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R DIHYDROXYISOVALDEHYDRAT DASH RXN
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD1266 or ACIAD3636
is: DHAD1
name: dihydroxy-acid dehydratase
is: DIHYDROXYISOVALDEHYDRAT-RXN
product: 571546
reactant: 571534
fast: false
product: 571558

571546
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

571534
type: SpeciesReference
stoichiometry: 1.0
species: M DIOH DASH ISOVALERATE LBRACKET C RBRACKET

M DIOH DASH ISOVALERATE LBRACKET C RBRACKET
type: Species
has only substance units: false
in compartment: 570138
boundary condition: false
initial amount: NaN
is: C04272
initial concentration: NaN
name: 2,3-dihydroxy-isovalerate
constant: false
is: 23dhmb
is: DIOH-ISOVALERATE

571558
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET

M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
is: C00141
initial concentration: NaN
initial amount: NaN
name: 2-keto-isovalerate
is: 3mob
is: 2-KETO-ISOVALERATE
has only substance units: false
constant: false

R TRANS DASH RXN DASH ETHANESULFONATE
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD0034 and ACIAD0035 and ACIAD0037 and ACIAD0038 or ACIAD1523 and ACIAD1524 and ACIAD1525 and ACIAD1526 or ACIAD1586 and ACIAD1587 and ACIAD1593 and ACIAD1601
product: 609896
product: 609908
name: transport of ethane sulfonate [extraorganism;cytosol](primary active atp)
reactant: 609872
fast: false
reactant: 609848
product: 609884
reactant: 609860
is: TRANS-RXNIM-5913

609896
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

609908
type: SpeciesReference
stoichiometry: 1.0
species: 570270

570270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ethane sulfonate

609872
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

609848
type: SpeciesReference
stoichiometry: 1.0
species: 570715

570715
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: ethane sulfonate

609884
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

609860
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M TRP DASH TRNAS LBRACKET C RBRACKET
type: Species
is: TRP-TRNAS
is: C01652
in compartment: 570138
constant: false
boundary condition: false
is: trnatrp
name: tryptophan trna
has only substance units: false
initial amount: NaN
initial concentration: NaN

R SUCCINYLDIAMINOPIMTRANS DASH RXN
type: Reaction
product: 584461
notes: GENE_ASSOCIATION: ACIAD1231 or ACIAD1284
reactant: 584437
fast: false
product: 584449
reactant: 584425
name: succinyldiaminopimelate aminotransferase
is: SDPTA
reversible: true
is: SUCCINYLDIAMINOPIMTRANS-RXN

584461
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH SUCCINYL DASH 2 DASH AMINO DASH 6 DASH KETOPIMELATE LBRACKET C RBRACKET

M N DASH SUCCINYL DASH 2 DASH AMINO DASH 6 DASH KETOPIMELATE LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
is: N-SUCCINYL-2-AMINO-6-KETOPIMELATE
name: n-succinyl-2-amino-6-ketopimelate
initial concentration: NaN
is: C04462
boundary condition: false
is: sl2a6o
in compartment: 570138
initial amount: NaN

584437
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH SUCCINYLLL DASH 2 COMMA 6 DASH DIAMINOPIMELATE LBRACKET C RBRACKET

M N DASH SUCCINYLLL DASH 2 COMMA 6 DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: sl26da
boundary condition: false
in compartment: 570138
has only substance units: false
is: C04421
constant: false
initial concentration: NaN
name: n-succinyl-ll-2,6-diaminopimelate
is: n-succinylll-2,6-diaminopimelate

584449
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

584425
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

R ACETOLACTREDUCTOISOM DASH RXN
type: Reaction
is: KARA1
is: ACETOLACTREDUCTOISOM-RXN
reactant: 578646
reactant: 578658
reversible: true
product: 578670
fast: false
name: ketol-acid reductoisomerase
notes: GENE_ASSOCIATION: ACIAD3102
product: 578682

578646
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH ACETO DASH LACTATE LBRACKET C RBRACKET

M 2 DASH ACETO DASH LACTATE LBRACKET C RBRACKET
type: Species
name: 2-aceto-lactate
boundary condition: false
has only substance units: false
is: alac-S
initial amount: NaN
is: C06010
constant: false
is: 2-ACETO-LACTATE
in compartment: 570138
initial concentration: NaN

578658
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

578670
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

578682
type: SpeciesReference
stoichiometry: 1.0
species: M DIOH DASH ISOVALERATE LBRACKET C RBRACKET

M UDP DASH GLUCOSE LBRACKET C RBRACKET
type: Species
name: udp-d-glucose
in compartment: 570138
has only substance units: false
initial amount: NaN
is: C00029
boundary condition: false
is: udpg
is: UDP-GLUCOSE
constant: false
initial concentration: NaN

M NITRITE LBRACKET C RBRACKET
type: Species
is: NITRITE
is: C00088
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
constant: false
is: no2
name: no2-
in compartment: 570138

R THREONINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reactant: 611254
notes: GENE_ASSOCIATION: ACIAD3055
product: 611315
product: 611303
name: threonine--trna ligase
product: 611291
reactant: 611266
fast: false
reactant: 611278
is: THRTRS
is: THREONINE--TRNA-LIGASE-RXN
reversible: false

611254
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

611315
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH THR DASH TRNAS LBRACKET C RBRACKET

611303
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

611291
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

611266
type: SpeciesReference
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET

611278
type: SpeciesReference
stoichiometry: 1.0
species: M THR DASH TRNAS LBRACKET C RBRACKET

M THR DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
is: trnathr
initial concentration: NaN
constant: false
in compartment: 570138
name: threonine trna
has only substance units: false
is: THR-TRNAS
is: C01651

http://identifiers.org/biomodels.db/MODEL1949107276#R_H2NEOPTERINP3PYROPHOSPHOHYDRO_DASH_RXN
type: Reaction
reactant: 601126
reversible: false
product: 601162
notes: GENE_ASSOCIATION:
name: dihydroneopterin triphosphate pyrophosphatase
product: 601150
fast: false
reactant: 601138
is: DNTPPA
is: H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN

601126
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

601162
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

601150
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P LBRACKET C RBRACKET

M DIHYDRONEOPTERIN DASH P LBRACKET C RBRACKET
type: Species
is: DIHYDRONEOPTERIN-P
initial amount: NaN
is: dhpmp
boundary condition: false
in compartment: 570138
has only substance units: false
constant: false
initial concentration: NaN
name: dihydroneopterin phosphate
is: C05925

601138
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P3 LBRACKET C RBRACKET

R TRANS DASH RXN DASH 162
type: Reaction
name: transport of l-glutamate [extraorganism;cytosol](secondary symport)
product: 605753
reversible: false
reactant: 605741
is: TRANS-RXN-162
fast: false
product: 605765
reactant: 605728
is: GLUt2rpp
notes: GENE_ASSOCIATION: ACIAD1339 or ACIAD0319 or ACIAD0481 or ACIAD3230

605753
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

605741
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

605765
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

605728
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET

R RXN0 DASH 742
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3658
product: 603128
name: phosphoribosylaminoimidazole carboxylase, atpase subunit
reactant: 603104
is: RXN0-742
fast: false
product: 603140
is: AIRC2
reactant: 603068
product: 603116
reactant: 603080
reactant: 603092
reversible: false

603128
type: SpeciesReference
stoichiometry: 1.0
species: M CPD0 DASH 181 LBRACKET C RBRACKET

M CPD0 DASH 181 LBRACKET C RBRACKET
type: Species
boundary condition: false
is: CPD0-181
in compartment: 570138
constant: false
has only substance units: false
is: 5caiz
initial concentration: NaN
initial amount: NaN
name: n5-carboxyaminoimidazole ribonucleotide

603104
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

603140
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

603068
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C03373
name: 5'-phosphoribosyl-5-aminoimidazole
initial concentration: NaN
has only substance units: false
is: air
boundary condition: false
constant: false
initial amount: NaN
is: 5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE

603116
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

603080
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

603092
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M C6 COLON 0 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: HEXANOATE
in compartment: 570138
constant: false
initial amount: NaN
boundary condition: false
has only substance units: false
name: hexanoate
is: hxa
is: C01585

M MAL LBRACKET E RBRACKET
type: Species
initial amount: NaN
is: C00149
is: MAL
has only substance units: false
is: mal-L
constant: false
name: malate
boundary condition: false
initial concentration: NaN
in compartment: 570126

M C12 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
in compartment: 570138
is: 3oddcoa
initial amount: NaN
initial concentration: NaN
is: C05263
name: 3-oxododecanoyl-coa
boundary condition: false

R SHIKIMATE DASH 5 DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 600428
is: SHK3Dr
reactant: 600404
product: 600416
reversible: true
is: SHIKIMATE-5-DEHYDROGENASE-RXN
notes: GENE_ASSOCIATION: ACIAD0418
reactant: 600392
name: shikimate 5-dehydrogenase
fast: false

600428
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET C RBRACKET

600404
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

600416
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

600392
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET

M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
name: 3-dehydro-shikimate
boundary condition: false
is: C02637
is: 3-DEHYDRO-SHIKIMATE
in compartment: 570138
is: 3dhsk
constant: false
initial concentration: NaN

581725
type: Reaction
reactant: 581737
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of pyruvate

581737
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET E RBRACKET

M PYRUVATE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: pyr
name: pyruvate
has only substance units: false
is: C00022
constant: false
initial amount: NaN
in compartment: 570126
is: PYRUVATE
initial concentration: NaN

R UDPKIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0556
fast: false
is: NDPK2
reactant: 614888
reactant: 614900
is: UDPKIN-RXN
product: 614924
product: 614912
name: udp kinase
reversible: true

614888
type: SpeciesReference
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET

614900
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

614924
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

614912
type: SpeciesReference
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET

M UTP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
is: UTP
constant: false
is: utp
in compartment: 570138
name: utp
boundary condition: false
initial amount: NaN
is: C00075

M DCMP LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: C00239
boundary condition: false
is: DCMP
in compartment: 570138
name: dcmp
constant: false
has only substance units: false
initial concentration: NaN
is: dcmp

M URACIL LBRACKET E RBRACKET
type: Species
is: URACIL
initial amount: NaN
is: C00106
is: ura
constant: false
boundary condition: false
initial concentration: NaN
name: uracil
in compartment: 570126
has only substance units: false

M 4 DASH P DASH PANTOTHENATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
has only substance units: false
name: 4'-phosphopantothenate
constant: false
is: 4ppan
initial amount: NaN
boundary condition: false
is: 4-P-PANTOTHENATE
is: C03492

M FRU1P LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: C02976
in compartment: 570138
initial amount: NaN
is: FRU1P
is: f1p
initial concentration: NaN
constant: false
name: fructose-1-phosphate

M BUTANEDIOL LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
initial concentration: NaN
constant: false
boundary condition: false
in compartment: 570138
is: C03044
is: BUTANEDIOL
name: 2,3-butanediol

R C14 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
name: 3oxoacyl-coa thiolase (c14:0)
reactant: 575010
reactant: 574998
product: 575034
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
fast: false
is: KETOACYLCOATHIOL-RXN
product: 575022
reversible: true
is: KAT6

575010
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

574998
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

M C14 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
boundary condition: false
name: 3-oxotetradecanoyl-coa
has only substance units: false
initial concentration: NaN
is: C05261
in compartment: 570138
constant: false
initial amount: NaN
is: 3otdcoa

575034
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

575022
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH COA LBRACKET C RBRACKET

M C12 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
initial concentration: NaN
name: dodecanoyl-coa
is: C01832
has only substance units: false
boundary condition: false
is: ddcacoa
is: LAUROYLCOA-CPD
in compartment: 570138

613700
type: Reaction
reactant: 613712
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of na+

613712
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET

M NA PLUS LBRACKET E RBRACKET
type: Species
boundary condition: false
has only substance units: false
name: na+
initial amount: NaN
is: NA+
is: na1
in compartment: 570126
initial concentration: NaN
is: C01330
constant: false

R 2 DASH OCTAPRENYL DASH METHOXY DASH BENZOQ DASH METH DASH RXN
type: Reaction
product: 580442
is: OMBZLM
product: 580454
reactant: 580418
name: 2-octaprenyl-6-methoxy-benzoquinol methylase
is: 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN
fast: false
reactant: 580430
reversible: false
notes: GENE_ASSOCIATION: ACIAD0384

580442
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZQ LBRACKET C RBRACKET

M OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZQ LBRACKET C RBRACKET
type: Species
name: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone
initial concentration: NaN
has only substance units: false
is: C05814
is: OCTAPRENYL-METHYL-METHOXY-BENZQ
initial amount: NaN
is: 2ommb
boundary condition: false
in compartment: 570138
constant: false

580454
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET

M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET
type: Species
constant: false
is: C00021
is: ADENOSYL-HOMO-CYS
initial amount: NaN
has only substance units: false
boundary condition: false
name: s-adenosyl-homocysteine
is: ahcys
in compartment: 570138
initial concentration: NaN

580418
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHOXY DASH BENZOQUINONE LBRACKET C RBRACKET

M OCTAPRENYL DASH METHOXY DASH BENZOQUINONE LBRACKET C RBRACKET
type: Species
name: 2-octaprenyl-6-methoxy-1,4-benzoquinone
constant: false
in compartment: 570138
is: C05813
is: OCTAPRENYL-METHOXY-BENZOQUINONE
is: 2ombz
has only substance units: false
initial amount: NaN
initial concentration: NaN
boundary condition: false

580430
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
is: S-ADENOSYLMETHIONINE
has only substance units: false
constant: false
is: amet
name: s-adenosyl-l-methionine
initial amount: NaN
boundary condition: false
is: C00019

610798
type: Reaction
product: 610822
reactant: 610810
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of salicylacetate [extraorganism;cytosol](passive)

610822
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET C RBRACKET

M CPDIM DASH 6114 LBRACKET C RBRACKET
type: Species
is: CPDIM-6114
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: salicylacetate

610810
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET E RBRACKET

M CPDIM DASH 6114 LBRACKET E RBRACKET
type: Species
is: CPDIM-6114
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: salicylacetate

M C8 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
constant: false
is: C05266
name: 3-hydroxyoctanoyl-coa
has only substance units: false
in compartment: 570138
is: 3hocoa
initial amount: NaN
initial concentration: NaN
boundary condition: false

R ARGSUCCINSYN DASH RXN
type: Reaction
reactant: 574542
reactant: 574530
fast: false
name: argininosuccinate synthase
reversible: true
product: 574578
notes: GENE_ASSOCIATION: ACIAD1151
product: 574554
product: 574566
is: ARGSS
is: ARGSUCCINSYN-RXN
reactant: 574517

574542
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

574530
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

574578
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET

574554
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

574566
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

574517
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH CITRULLINE LBRACKET C RBRACKET

M L DASH CITRULLINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial concentration: NaN
is: citr-L
is: C00327
is: L-CITRULLINE
name: citrulline
boundary condition: false
initial amount: NaN
has only substance units: false
constant: false

R GLUC1PURIDYLTRANS DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0099
name: utp--glucose-1-phosphate uridylyltransferase
is: GALUi
reactant: 588802
is: GLUC1PURIDYLTRANS-RXN
product: 588827
product: 588814
reversible: false
fast: false
reactant: 588790

588802
type: SpeciesReference
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET

588827
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

588814
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET

588790
type: SpeciesReference
stoichiometry: 1.0
species: M GLC DASH 1 DASH P LBRACKET C RBRACKET

M GLC DASH 1 DASH P LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: g1p
is: C00103
constant: false
boundary condition: false
in compartment: 570138
has only substance units: false
name: glucose-1-phosphate
is: GLC-1-P
initial concentration: NaN

R GLYCERATE DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 581520
is: HPYRRx
reversible: true
product: 581508
is: GLYCERATE-DEHYDROGENASE-RXN
reactant: 581484
notes: GENE_ASSOCIATION: ACIAD3278 or ACIAD1301
reactant: 581496
fast: false
name: glycerate dehydrogenase

581520
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

581508
type: SpeciesReference
stoichiometry: 1.0
species: M OH DASH PYR LBRACKET C RBRACKET

581484
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCERATE LBRACKET C RBRACKET

581496
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R TRANS DASH RXN DASH 58
type: Reaction
product: 608894
notes: GENE_ASSOCIATION: ACIAD0700
is: LYSt2pp
reactant: 608869
is: TRANS-RXN-58
name: transport of l-lysine [extraorganism;cytosol](secondary symport)
reactant: 608857
reversible: false
fast: false
product: 608881

608894
type: SpeciesReference
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET

608869
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

608857
type: SpeciesReference
stoichiometry: 1.0
species: M LYS LBRACKET E RBRACKET

M LYS LBRACKET E RBRACKET
type: Species
is: C00047
boundary condition: false
in compartment: 570126
initial amount: NaN
has only substance units: false
constant: false
is: LYS
initial concentration: NaN
is: lys-L
name: l-lysine

608881
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

M BENZOATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
is: BENZOATE
constant: false
has only substance units: false
is: C00180
initial amount: NaN
is: bz
boundary condition: false
name: benzoate

R C10 COLON 0 DASH CARBOXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: RXNIM-6199
reactant: 582302
product: 582338
notes: GENE_ASSOCIATION: ACIAD1693
fast: false
reactant: 582314
name: dicarboxylate acyl-coa dehydrogenase (c10:0)
reversible: false
product: 582326

582302
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

582338
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

582314
type: SpeciesReference
stoichiometry: 1.0
species: 570162

570162
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 9-carboxynonanoyl-coa

582326
type: SpeciesReference
stoichiometry: 1.0
species: 570751

570751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-9-carboxynon-2-enoyl-coa

570450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-PHOSPHATIDATE_TAG

M C10 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C05754
boundary condition: false
is: TRANS-D2-DECENOYL-ACP
in compartment: 570138
is: tdec2eACP
name: trans-dec-2-enoyl-acp
initial concentration: NaN
initial amount: NaN
constant: false

R ADCLY DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2590
product: 603730
reversible: true
is: ADCLY-RXN
is: ADCL
name: 4-amino-4-deoxychorismate lyase
fast: false
reactant: 603718
product: 603742

603730
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

603718
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH 4 DASH DEOXYCHORISMATE LBRACKET C RBRACKET

M 4 DASH AMINO DASH 4 DASH DEOXYCHORISMATE LBRACKET C RBRACKET
type: Species
is: C11355
initial amount: NaN
has only substance units: false
in compartment: 570138
name: 4-amino-4-deoxychorismate
constant: false
initial concentration: NaN
is: 4adcho
is: 4-AMINO-4-DEOXYCHORISMATE
boundary condition: false

603742
type: SpeciesReference
stoichiometry: 1.0
species: M P DASH AMINO DASH BENZOATE LBRACKET C RBRACKET

M P DASH AMINO DASH BENZOATE LBRACKET C RBRACKET
type: Species
name: p-aminobenzoate
initial concentration: NaN
boundary condition: false
is: 4abz
is: C00568
constant: false
has only substance units: false
initial amount: NaN
is: P-AMINO-BENZOATE
in compartment: 570138

R GLYC3PDEHYDROG DASH RXN
type: Reaction
fast: false
product: 600187
name: glycerol-3-phosphate dehydrogenase
is: G3PD5
is: GLYC3PDEHYDROG-RXN
reactant: 600163
reactant: 600151
product: 600175
notes: GENE_ASSOCIATION: ACIAD2844
reversible: false

600187
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET

M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET
type: Species
is: dhap
is: C00111
initial amount: NaN
in compartment: 570138
is: DIHYDROXY-ACETONE-PHOSPHATE
boundary condition: false
constant: false
has only substance units: false
name: dihydroxy-acetone-phosphate
initial concentration: NaN

600163
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET

M GLYCEROL DASH 3P LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: GLYCEROL-3P
initial amount: NaN
is: glyc3p
name: glycerol-3-phosphate
constant: false
is: C00093
initial concentration: NaN
has only substance units: false
boundary condition: false

600151
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

600175
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

M S DASH LACTOYL DASH GLUTATHIONE LBRACKET C RBRACKET
type: Species
is: C03451
in compartment: 570138
name: s-lactoyl-glutathione
initial amount: NaN
boundary condition: false
has only substance units: false
is: S-LACTOYL-GLUTATHIONE
initial concentration: NaN
is: lgt-S
constant: false

587096
type: Reaction
reactant: 587108
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-threonine

587108
type: SpeciesReference
stoichiometry: 1.0
species: M THR LBRACKET E RBRACKET

M THR LBRACKET E RBRACKET
type: Species
is: C00188
name: l-threonine
has only substance units: false
is: THR
in compartment: 570126
boundary condition: false
initial amount: NaN
constant: false
initial concentration: NaN
is: thr-L

R ADENYLOSUCCINATE DASH SYNTHASE DASH RXN
type: Reaction
product: 591886
product: 591873
product: 591861
reactant: 591825
is: ADENYLOSUCCINATE-SYNTHASE-RXN
notes: GENE_ASSOCIATION: ACIAD1258
reactant: 591849
reactant: 591837
reversible: true
is: ADSS
name: adenylosuccinate synthase
fast: false

591886
type: SpeciesReference
stoichiometry: 1.0
species: M ADENYLOSUCC LBRACKET C RBRACKET

591873
type: SpeciesReference
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET

591861
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

591825
type: SpeciesReference
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET

591849
type: SpeciesReference
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET

591837
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

M HIS LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
initial amount: NaN
has only substance units: false
boundary condition: false
constant: false
is: his-L
is: HIS
is: C00135
name: l-histidine

R ARGSUCCINLYA DASH RXN
type: Reaction
reactant: 578718
reversible: true
is: ARGSUCCINLYA-RXN
product: 578730
is: ARGSL
product: 578742
fast: false
name: argininosuccinate lyase
notes: GENE_ASSOCIATION: ACIAD0283

578718
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ARGININO DASH SUCCINATE LBRACKET C RBRACKET

578730
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

578742
type: SpeciesReference
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET

M ARG LBRACKET C RBRACKET
type: Species
is: ARG
has only substance units: false
boundary condition: false
constant: false
in compartment: 570138
initial amount: NaN
is: C00062
name: l-arginine
is: arg-L
initial concentration: NaN

606029
type: Reaction
product: 606053
reactant: 606041
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 4-hydroxybenzyl alcohol [extraorganism;cytosol](passive)

606053
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET

M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: Species
is: 4-HYDROXY-BENZYL-ALCOHOL
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-hydroxybenzyl alcohol

606041
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET E RBRACKET

R H2NEOPTERINALDOL DASH RXN
type: Reaction
is: H2NEOPTERINALDOL-RXN
product: 616680
is: DHNPA2
fast: false
reversible: false
name: dihydroneopterin aldolase
reactant: 616656
notes: GENE_ASSOCIATION: ACIAD2408
product: 616668

616680
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLALDEHYDE LBRACKET C RBRACKET

M GLYCOLALDEHYDE LBRACKET C RBRACKET
type: Species
has only substance units: false
constant: false
initial concentration: NaN
boundary condition: false
in compartment: 570138
is: C00266
is: gcald
is: GLYCOLALDEHYDE
name: glycolaldehyde
initial amount: NaN

616656
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRO DASH NEO DASH PTERIN LBRACKET C RBRACKET

M DIHYDRO DASH NEO DASH PTERIN LBRACKET C RBRACKET
type: Species
constant: false
name: dihydro-neo-pterin
is: DIHYDRO-NEO-PTERIN
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
is: C04874
in compartment: 570138
is: dhnpt

616668
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH OH DASH HYDROXYMETHYL DASH DIHYDROPTERIDINE LBRACKET C RBRACKET

R C14 COLON 1 LPAREN C5 RPAREN DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
product: 588166
reactant: 588154
fast: false
name: 3oxoacyl-acp reductase (c14:1(c5))
reversible: false
is: 3-OXOACYL-ACP-REDUCT-RXN
product: 588178
reactant: 588142
notes: GENE_ASSOCIATION: ACIAD0871

588166
type: SpeciesReference
stoichiometry: 1.0
species: 570222

570222
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxytetradec-4-enoyl-acp

588154
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

588178
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

588142
type: SpeciesReference
stoichiometry: 1.0
species: 570426

M CPD DASH 3623 LBRACKET C RBRACKET
type: Species
name: sebacate
initial amount: NaN
constant: false
boundary condition: false
is: C08277
has only substance units: false
in compartment: 570138
is: CPD-3623
initial concentration: NaN

M GLUTAMATE DASH 1 DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: Species
constant: false
initial concentration: NaN
initial amount: NaN
name: glutamate-1-semialdehyde
has only substance units: false
is: glu1sa
is: C03741
is: GLUTAMATE-1-SEMIALDEHYDE
in compartment: 570138
boundary condition: false

612423
type: Reaction
reactant: 612436
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of acetoacetate

612436
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET E RBRACKET

R AMIDASE DASH RXN
type: Reaction
fast: false
is: AMIDASE-RXN
notes: GENE_ASSOCIATION: ACIAD1618
reactant: 581376
reversible: false
reactant: 581364
product: 581388
name: propanamide amidase
product: 581400

581376
type: SpeciesReference
stoichiometry: 1.0
species: M PROPANAMIDE LBRACKET C RBRACKET

581364
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

581388
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

581400
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET

M PROPIONATE LBRACKET C RBRACKET
type: Species
is: ppa
in compartment: 570138
is: C00163
name: propionate
boundary condition: false
initial amount: NaN
is: PROPIONATE
has only substance units: false
initial concentration: NaN
constant: false

R PHOSNACMURPENTATRANS DASH RXN
type: Reaction
is: PAPPT3
reactant: 604283
reactant: 604295
product: 604319
reversible: false
name: phospho-n-acetylmuramoyl-pentapeptide transferase
fast: false
notes: GENE_ASSOCIATION: ACIAD3363
is: PHOSNACMURPENTATRANS-RXN
product: 604307

604283
type: SpeciesReference
stoichiometry: 1.0
species: M UNDECAPRENYL DASH P LBRACKET C RBRACKET

604295
type: SpeciesReference
stoichiometry: 1.0
species: M C1 LBRACKET C RBRACKET

M C1 LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
is: C1
in compartment: 570138
name: udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminoheptanedioate- d-alanyl-d-alanine
has only substance units: false
constant: false
is: ugmda
is: C04882
initial concentration: NaN

604319
type: SpeciesReference
stoichiometry: 1.0
species: M C5 LBRACKET C RBRACKET

604307
type: SpeciesReference
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET

M UMP LBRACKET C RBRACKET
type: Species
is: UMP
is: ump
name: ump
constant: false
initial concentration: NaN
initial amount: NaN
is: C00105
has only substance units: false
boundary condition: false
in compartment: 570138

M ASN LBRACKET C RBRACKET
type: Species
name: l-asparagine
has only substance units: false
initial amount: NaN
constant: false
boundary condition: false
in compartment: 570138
is: C00152
initial concentration: NaN
is: asn-L
is: ASN

R C12 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD1381
fast: false
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
product: 578477
reactant: 578453
name: 3hydroxyacyl-acp dehydratase (c12:0)
is: 3HAD120
product: 578465

578477
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

578453
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET

M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: 3-hydroxydodecanoyl-acp
initial concentration: NaN
is: C05757
has only substance units: false
is: 3hddecACP
constant: false
boundary condition: false
initial amount: NaN

578465
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

606414
type: Reaction
reactant: 606426
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of sebacate

606426
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 3623 LBRACKET E RBRACKET

M CPD DASH 3623 LBRACKET E RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
name: sebacate
constant: false
is: CPD-3623
has only substance units: false
is: C08277
boundary condition: false
in compartment: 570126

R L DASH LACTDEHYDROGFMN DASH RXN
type: Reaction
product: 597610
product: 597598
is: L-LACTDEHYDROGFMN-RXN
reactant: 597574
fast: false
notes: GENE_ASSOCIATION: ACIAD0108
is: L-LACD2
reactant: 597586
name: lactate oxidation
reversible: false

597610
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

M UBIQUINOL DASH 8 LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: C00390
constant: false
is: q8h2
in compartment: 570138
boundary condition: false
has only substance units: false
initial concentration: NaN
name: ubiquinol(40)
is: UBIQUINOL-8

597598
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

597574
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET C RBRACKET

M L DASH LACTATE LBRACKET C RBRACKET
type: Species
is: C00186
initial concentration: NaN
name: lactate
in compartment: 570138
is: lac-L
is: L-LACTATE
boundary condition: false
has only substance units: false
constant: false
initial amount: NaN

597586
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

M UBIQUINONE DASH 8 LBRACKET C RBRACKET
type: Species
constant: false
initial amount: NaN
name: ubiquinone(40)
is: C00399
has only substance units: false
initial concentration: NaN
boundary condition: false
is: q10
is: UBIQUINONE-8
in compartment: 570138

R 3 DASH ISOPROPYLMALISOM DASH RXN
type: Reaction
is: IPPMIa
reversible: true
notes: GENE_ASSOCIATION: ACIAD0466 and ACIAD0463
name: 3-isopropylmalate dehydratase
reactant: 590247
fast: false
is: 3-ISOPROPYLMALISOM-RXN
product: 590259
is: IPPMIb

590247
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH CARBOXY DASH 3 DASH HYDROXY DASH ISOCAPROATE LBRACKET C RBRACKET

M 3 DASH CARBOXY DASH 3 DASH HYDROXY DASH ISOCAPROATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: 3-CARBOXY-3-HYDROXY-ISOCAPROATE
is: C02504
initial amount: NaN
is: 3c3hmp
boundary condition: false
has only substance units: false
initial concentration: NaN
constant: false
name: 3-carboxy-3-hydroxy-isocaproate

590259
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH D DASH THREO DASH HYDROXY DASH 3 DASH CARBOXY DASH ISOCAPROATE LBRACKET C RBRACKET

R ALLANTOICASE DASH RXN
type: Reaction
product: 580502
is: ALLTAH
reactant: 580466
reactant: 580478
notes: GENE_ASSOCIATION: ACIAD3541
name: allantoicase
reversible: true
is: ALLANTOICASE-RXN
fast: false
product: 580490

580502
type: SpeciesReference
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET

M UREA LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
has only substance units: false
is: C00086
initial amount: NaN
name: urea
is: urea
boundary condition: false
is: UREA
initial concentration: NaN

580466
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580478
type: SpeciesReference
stoichiometry: 1.0
species: M ALLANTOATE LBRACKET C RBRACKET

580490
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1091 LBRACKET C RBRACKET

M CPD DASH 1091 LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
initial concentration: NaN
is: C00603
has only substance units: false
boundary condition: false
is: urdglyc
is: CPD-1091
name: (s)-ureidoglycolate
initial amount: NaN

M D DASH CYSTEINE LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
is: D-CYSTEINE
in compartment: 570138
name: d-cysteine
initial concentration: NaN
is: cys-D
constant: false
has only substance units: false
is: C00793

R C10 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
is: 3-OXOACYL-ACP-SYNTH-RXN
product: 574095
reactant: 574071
fast: false
name: 3oxoacyl-acp synthase (c10:0)
product: 574107
reversible: false
is: 3OAS100
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 574120
reactant: 574083

574095
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

574071
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH ACP LBRACKET C RBRACKET

M C8 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
is: C05752
initial concentration: NaN
is: ocACP
initial amount: NaN
has only substance units: false
in compartment: 570138
constant: false
boundary condition: false
is: OCTANOYL-ACP
name: octanoyl-acp

574107
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

574120
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

574083
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

583882
type: Reaction
reactant: 583895
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-carnitine

583895
type: SpeciesReference
stoichiometry: 1.0
species: M CARNITINE LBRACKET E RBRACKET

M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
is: C02637
in compartment: 570114
is: 3dhsk
initial amount: NaN
boundary condition: false
name: 3-dehydro-shikimate
is: 3-DEHYDRO-SHIKIMATE

R GLYCOLALD DASH DEHYDROG DASH RXN
type: Reaction
product: 578188
fast: false
product: 578200
reactant: 578164
is: GLYCOLALD-DEHYDROG-RXN
is: GCALDD
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542
reversible: true
reactant: 578152
name: glycolaldehyde dehydrogenase
reactant: 578176

578188
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

578200
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET

M GLYCOLLATE LBRACKET C RBRACKET
type: Species
is: glyclt
in compartment: 570138
is: C00160
name: glycolate
constant: false
initial concentration: NaN
is: GLYCOLLATE
has only substance units: false
initial amount: NaN
boundary condition: false

578164
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

578152
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

578176
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLALDEHYDE LBRACKET C RBRACKET

R RXN DASH 681
type: Reaction
product: 579115
product: 579103
reactant: 579091
notes: GENE_ASSOCIATION: ACIAD1211
is: RXN-681
fast: false
reversible: false
name: l-2,4-diaminobutyrate decarboxylase

579115
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 313 LBRACKET C RBRACKET

M CPD DASH 313 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
constant: false
boundary condition: false
initial amount: NaN
is: C00986
has only substance units: false
is: 13dampp
name: 1,3-diaminopropane
is: CPD-313

579103
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

579091
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 470 LBRACKET C RBRACKET

R RXN DASH 2
type: Reaction
reactant: 605390
product: 605439
product: 605415
name: vanillate o-demethylase oxygenase
product: 605427
notes: GENE_ASSOCIATION: ACIAD0979 and ACIAD0980
fast: false
reversible: false
product: 605402
is: RXN-2
reactant: 605366
reactant: 605378

605390
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

605439
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

605415
type: SpeciesReference
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET

M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: Species
name: protocatechuate
is: 3,4-DIHYDROXYBENZOATE
in compartment: 570138
boundary condition: false
has only substance units: false
constant: false
initial concentration: NaN
is: C00230
initial amount: NaN

605427
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

605402
type: SpeciesReference
stoichiometry: 1.0
species: M FORMALDEHYDE LBRACKET C RBRACKET

M FORMALDEHYDE LBRACKET C RBRACKET
type: Species
initial amount: NaN
name: formaldehyde
initial concentration: NaN
boundary condition: false
in compartment: 570138
is: FORMALDEHYDE
has only substance units: false
is: fald
constant: false
is: C00067

605366
type: SpeciesReference
stoichiometry: 1.0
species: M VANILLATE LBRACKET C RBRACKET

M VANILLATE LBRACKET C RBRACKET
type: Species
name: vanillate
boundary condition: false
constant: false
is: C06672
in compartment: 570138
initial amount: NaN
has only substance units: false
is: VANILLATE
initial concentration: NaN

605378
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

R OROPRIBTRANS DASH RXN
type: Reaction
fast: false
name: orotate phosphoribosyltransferase
reversible: true
product: 617199
is: OROPRIBTRANS-RXN
reactant: 617187
product: 617211
is: ORPT
reactant: 617175
notes: GENE_ASSOCIATION: ACIAD3525

617199
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

M PRPP LBRACKET C RBRACKET
type: Species
initial amount: NaN
in compartment: 570138
has only substance units: false
name: prpp
is: prpp
boundary condition: false
constant: false
initial concentration: NaN
is: C00119
is: PRPP

617187
type: SpeciesReference
stoichiometry: 1.0
species: M OROTIDINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

M OROTIDINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: Species
is: C01103
has only substance units: false
in compartment: 570138
initial concentration: NaN
boundary condition: false
constant: false
is: orot5p
is: OROTIDINE-5-PHOSPHATE
name: orotidine-5'-phosphate
initial amount: NaN

617211
type: SpeciesReference
stoichiometry: 1.0
species: M OROTATE LBRACKET C RBRACKET

M OROTATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
in compartment: 570138
constant: false
initial concentration: NaN
is: OROTATE
has only substance units: false
name: orotate
is: C00295
is: orot
boundary condition: false

617175
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

M S DASH ADENOSYL DASH 4 DASH METHYLTHIO DASH 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
type: Species
is: amob
boundary condition: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: s-adenosyl-4-methylthio-2-oxobutanoate
constant: false
is: S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE
has only substance units: false
is: C04425

R TRANS DASH RXN DASH MALONATE
type: Reaction
name: transport of malonate [extraorganism;cytosol](secondary symport)
reactant: 591681
reactant: 591693
product: 591717
product: 591705
notes: GENE_ASSOCIATION: ACIAD0710 or ACIAD2956
is: RXNIM-6218
fast: false
reversible: true

591681
type: SpeciesReference
stoichiometry: 1.0
species: M MALONATE LBRACKET E RBRACKET

591693
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

591717
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

591705
type: SpeciesReference
stoichiometry: 1.0
species: M MALONATE LBRACKET C RBRACKET

M MALONATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
name: malonate
initial amount: NaN
is: MALONATE
has only substance units: false
is: C00383
in compartment: 570138
constant: false

R 2OXOGLUTARATEDEH DASH RXN
type: Reaction
fast: false
product: 614840
reactant: 614792
reactant: 614804
notes: GENE_ASSOCIATION: ACIAD2876 and ACIAD2875 and ACIAD2874
reversible: false
is: 2OXOGLUTARATEDEH-RXN
reactant: 614816
product: 614828
is: AKGDH
product: 614852
name: 2-oxogluterate dehydrogenase

614840
type: SpeciesReference
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET

614792
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

614804
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

614816
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

614828
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

614852
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R C14 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
fast: false
product: 610184
reactant: 610148
name: 3oxoacyl-acp synthase (c14:0)
is: 3OAS140
product: 610160
product: 610172
reactant: 610136
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
reversible: false
is: 3-OXOACYL-ACP-SYNTH-RXN

610184
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

610148
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

610160
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

M C14 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
has only substance units: false
name: 3-oxotetradecanoyl-acp
in compartment: 570138
is: C05759
boundary condition: false
initial concentration: NaN
initial amount: NaN
constant: false
is: 3omrsACP

610172
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

610136
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET

M DGDP LBRACKET C RBRACKET
type: Species
has only substance units: false
is: DGDP
is: dgdp
name: dgdp
initial amount: NaN
boundary condition: false
in compartment: 570138
initial concentration: NaN
constant: false
is: C00361

R GLUTAMIDOTRANS DASH RXN
type: Reaction
reversible: false
is: IG3PS
reactant: 577394
product: 577431
product: 577418
is: GLUTAMIDOTRANS-RXN
notes: GENE_ASSOCIATION: ACIAD3404 and ACIAD3396
name: imidazole glycerol phosphate synthase
product: 577406
reactant: 577382
fast: false

577394
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBULOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET

M PHOSPHORIBULOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
in compartment: 570138
constant: false
is: PHOSPHORIBULOSYL-FORMIMINO-AICAR-P
is: prlp
name: phosphoribulosylformimino-aicar-p
initial concentration: NaN
is: C04916
boundary condition: false

577431
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ERYTHRO DASH IMIDAZOLE DASH GLYCEROL DASH P LBRACKET C RBRACKET

M D DASH ERYTHRO DASH IMIDAZOLE DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: Species
name: d-erythro-imidazole-glycerol-phosphate
has only substance units: false
is: D-ERYTHRO-IMIDAZOLE-GLYCEROL-P
initial amount: NaN
boundary condition: false
is: eig3p
in compartment: 570138
is: C04666
initial concentration: NaN
constant: false

577418
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

577406
type: SpeciesReference
stoichiometry: 1.0
species: M AICAR LBRACKET C RBRACKET

577382
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

M GLN LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
in compartment: 570138
is: gln-L
has only substance units: false
name: l-glutamine
constant: false
is: GLN
is: C00064
initial concentration: NaN

R ATPPHOSPHORIBOSYLTRANS DASH RXN
type: Reaction
reversible: true
product: 594888
fast: false
is: ATPPHOSPHORIBOSYLTRANS-RXN
name: atp phosphoribosyltransferase
product: 594876
is: ATPPRT
reactant: 594852
notes: GENE_ASSOCIATION: ACIAD0661 and ACIAD1257
reactant: 594864

594888
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

594876
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH ATP LBRACKET C RBRACKET

M PHOSPHORIBOSYL DASH ATP LBRACKET C RBRACKET
type: Species
name: phosphoribosyl-atp
is: prbatp
initial concentration: NaN
boundary condition: false
constant: false
in compartment: 570138
is: PHOSPHORIBOSYL-ATP
is: C02739
has only substance units: false
initial amount: NaN

594852
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

594864
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

M CIT LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: C00158
constant: false
has only substance units: false
initial concentration: NaN
is: cit
in compartment: 570138
boundary condition: false
name: citrate
is: CIT

M C4 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
initial amount: NaN
in compartment: 570138
is: BUTYRYL-ACP
has only substance units: false
is: butACP
boundary condition: false
constant: false
name: butanoyl-acp
is: C05745
initial concentration: NaN

M UDP DASH AAGM DASH DIAMINOHEPTANEDIOATE LBRACKET C RBRACKET
type: Species
is: UDP-AAGM-DIAMINOHEPTANEDIOATE
boundary condition: false
name: udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminoheptanedioate
constant: false
initial amount: NaN
is: ugmd
in compartment: 570138
is: C04877
has only substance units: false
initial concentration: NaN

R CMPKI DASH RXN
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD2348
product: 578032
product: 578044
name: cmp kinase
reactant: 578008
fast: false
reactant: 578020
is: CMPKI-RXN
is: CYTK1

578032
type: SpeciesReference
stoichiometry: 1.0
species: M CDP LBRACKET C RBRACKET

M CDP LBRACKET C RBRACKET
type: Species
name: cdp
has only substance units: false
is: C00112
initial amount: NaN
constant: false
is: CDP
is: cdp
in compartment: 570138
boundary condition: false
initial concentration: NaN

578044
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

578008
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

578020
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R C8 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
reactant: 578489
fast: false
reactant: 578501
product: 578513
product: 578525
is: 3OAR80
is: 3-OXOACYL-ACP-REDUCT-RXN
notes: GENE_ASSOCIATION: ACIAD0871
reversible: false
name: 3oxoacyl-acp reductase (c8:0)

578489
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

M C8 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
initial amount: NaN
name: 3-oxooctanoyl-acp
constant: false
initial concentration: NaN
in compartment: 570138
boundary condition: false
is: C05750
has only substance units: false
is: 3ooctACP

578501
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

578513
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

M C8 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
is: 3hoctACP
initial amount: NaN
constant: false
initial concentration: NaN
boundary condition: false
has only substance units: false
name: 3-hydroxyoctanoyl-acp
in compartment: 570138
is: C04620

578525
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

M GLYCOLLATE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: GLYCOLLATE
initial concentration: NaN
constant: false
is: glyclt
initial amount: NaN
has only substance units: false
name: glycolate
is: C00160
in compartment: 570126

R UREIDOGLYCOLATE DASH HYDROLASE DASH RXN
type: Reaction
is: UREIDOGLYCOLATE-HYDROLASE-RXN
product: 572567
notes: GENE_ASSOCIATION: ACIAD3542
product: 572579
reactant: 572555
reversible: false
name: ureidoglycolate hydrolase
product: 572591
is: UGLYCH
fast: false
reactant: 572543

572567
type: SpeciesReference
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET

572579
type: SpeciesReference
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET

M GLYOX LBRACKET C RBRACKET
type: Species
initial amount: NaN
name: glyoxylate
initial concentration: NaN
in compartment: 570138
is: GLYOX
has only substance units: false
constant: false
is: glx
boundary condition: false
is: C00048

572555
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

572591
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

572543
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1091 LBRACKET C RBRACKET

R HEMEOSYN DASH RXN
type: Reaction
reactant: 593801
name: protoheme ix farnesyltransferase
reactant: 593813
product: 593825
fast: false
product: 593837
notes: GENE_ASSOCIATION: ACIAD2429
is: HEMEOS
reactant: 593789
reversible: true
is: HEMEOSYN-RXN

593801
type: SpeciesReference
stoichiometry: 1.0
species: M FARNESYL DASH PP LBRACKET C RBRACKET

593813
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

593825
type: SpeciesReference
stoichiometry: 1.0
species: 571208

571208
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: HEME_O

593837
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

593789
type: SpeciesReference
stoichiometry: 1.0
species: M PROTOHEME LBRACKET C RBRACKET

M PROTOHEME LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: pheme
is: C00032
name: protoheme
has only substance units: false
constant: false
initial concentration: NaN
is: PROTOHEME
initial amount: NaN
boundary condition: false

R TRANS DASH RXN DASH 104
type: Reaction
fast: false
reactant: 587288
reactant: 587300
is: TRANS-RXN-104
product: 587324
reversible: false
notes: GENE_ASSOCIATION: ACIAD0106
product: 587312
name: transport of lactate [extraorganism;cytosol](secondary symport)
is: L-LACt2rpp

587288
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET E RBRACKET

M L DASH LACTATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
constant: false
has only substance units: false
name: lactate
is: lac-L
is: C00186
boundary condition: false
in compartment: 570126
is: L-LACTATE
initial concentration: NaN

587300
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

587324
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

587312
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET C RBRACKET

582182
type: Reaction
reactant: 582194
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-serine

582194
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET E RBRACKET

M D DASH SERINE LBRACKET E RBRACKET
type: Species
is: C00740
boundary condition: false
constant: false
has only substance units: false
name: d-serine
initial concentration: NaN
is: D-SERINE
in compartment: 570126
is: ser-D
initial amount: NaN

R RXNIM DASH 6099
type: Reaction
product: 573519
reactant: 573507
reactant: 573495
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6099
fast: false
reversible: true
name: caffeoyl-coa lyase

573519
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6096 LBRACKET C RBRACKET

M CPDIM DASH 6096 LBRACKET C RBRACKET
type: Species
is: CPDIM-6096
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3,4-dihydroxyphenyl-beta-hydroxypropionyl-coa

573507
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

573495
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEOYL DASH COA LBRACKET C RBRACKET

M CAFFEOYL DASH COA LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C00323
constant: false
initial concentration: NaN
boundary condition: false
name: caffeoyl-coa
initial amount: NaN
has only substance units: false
is: CAFFEOYL-COA

593947
type: Reaction
reactant: 593959
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of betaine

593959
type: SpeciesReference
stoichiometry: 1.0
species: M BETAINE LBRACKET E RBRACKET

M BETAINE LBRACKET E RBRACKET
type: Species
is: C00719
constant: false
in compartment: 570126
has only substance units: false
is: glyb
name: betaine
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: BETAINE

M HOMOSERINE DASH LACTONE LBRACKET C RBRACKET
type: Species
is: HOMOSERINE-LACTONE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: homoserine lactone

R TRANS DASH RXNIM DASH 5895
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3241 and ACIAD3242 and ACIAD3243 and ACIAD3244
product: 593042
fast: false
reversible: false
reactant: 593006
name: transport of toluene [extraorganism;cytosol](primary active atp)
reactant: 593018
reactant: 593030
product: 593054
product: 593066
is: TRANS-RXNIM-5895

593042
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

593006
type: SpeciesReference
stoichiometry: 1.0
species: M TOLUENE LBRACKET E RBRACKET

M TOLUENE LBRACKET E RBRACKET
type: Species
is: TOLUENE
boundary condition: false
name: toluene
initial concentration: NaN
has only substance units: false
initial amount: NaN
in compartment: 570126
is: C01455
constant: false

593018
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

593030
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

593054
type: SpeciesReference
stoichiometry: 1.0
species: M TOLUENE LBRACKET C RBRACKET

M TOLUENE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
boundary condition: false
name: toluene
is: C01455
in compartment: 570138
initial amount: NaN
is: TOLUENE
constant: false

593066
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

M URACIL LBRACKET C RBRACKET
type: Species
is: C00106
in compartment: 570138
name: uracil
initial concentration: NaN
constant: false
is: ura
boundary condition: false
has only substance units: false
is: URACIL
initial amount: NaN

M D DASH ALA DASH D DASH ALA LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
initial concentration: NaN
is: alaala
in compartment: 570138
boundary condition: false
name: d-alanyl-d-alanine
constant: false
is: D-ALA-D-ALA
is: C00993

R TRANSALDOL DASH RXN
type: Reaction
product: 574409
reactant: 574385
reactant: 574373
fast: false
is: TRANSALDOL-RXN
is: TALA
product: 574397
name: transaldolase
reversible: true
notes: GENE_ASSOCIATION: ACIAD1980

574409
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET

M FRUCTOSE DASH 6P LBRACKET C RBRACKET
type: Species
is: f6p
is: FRUCTOSE-6P
is: C00085
in compartment: 570138
name: fructose-6-phosphate
has only substance units: false
initial amount: NaN
initial concentration: NaN
constant: false
boundary condition: false

574385
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

574373
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH SEDOHEPTULOSE DASH 7 DASH P LBRACKET C RBRACKET

574397
type: SpeciesReference
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET

M DEOXYCYTIDINE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
is: DEOXYCYTIDINE
in compartment: 570126
is: C00881
initial amount: NaN
name: deoxycytidine
constant: false
has only substance units: false
is: dcyt

R GDPKIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0556
product: 592054
is: NDPK1
fast: false
is: GDPKIN-RXN
reactant: 592042
reactant: 592030
reversible: true
name: gdp kinase
product: 592066

592054
type: SpeciesReference
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET

592042
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

592030
type: SpeciesReference
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET

592066
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

M URIDINE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: C00299
initial concentration: NaN
in compartment: 570126
has only substance units: false
constant: false
initial amount: NaN
is: uri
is: URIDINE
name: uridine

R 3 DASH HYDROXYBUTYRATE DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 612820
name: 3-hydroxybutyrate dehydrogenase
reactant: 612808
fast: false
reversible: true
reactant: 612796
product: 612832
is: 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN
notes: GENE_ASSOCIATION: ACIAD2509

612820
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

612808
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

612796
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET C RBRACKET

M CPD DASH 335 LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
is: bhb
boundary condition: false
is: CPD-335
constant: false
in compartment: 570138
name: (r)-3-hydroxybutanoate
has only substance units: false
is: C01089

612832
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET

R TRANS DASH RXN DASH CONIFERYL DASH ALDEHYDE
type: Reaction
product: 583869
reversible: true
reactant: 583843
notes: GENE_ASSOCIATION: ACIAD1709
name: transport of coniferyl aldehyde [extraorganism;cytosol](secondary symport)
product: 583856
is: TRANS-RXNIM-5916
fast: false
reactant: 583830

583869
type: SpeciesReference
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET C RBRACKET

M CONIFERYL DASH ALDEHYDE LBRACKET C RBRACKET
type: Species
constant: false
initial amount: NaN
initial concentration: NaN
in compartment: 570138
is: CONIFERYL-ALDEHYDE
name: coniferyl aldehyde
has only substance units: false
boundary condition: false
is: C02666

583843
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

583856
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

583830
type: SpeciesReference
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET E RBRACKET

M CONIFERYL DASH ALDEHYDE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
in compartment: 570126
is: CONIFERYL-ALDEHYDE
initial amount: NaN
constant: false
has only substance units: false
boundary condition: false
is: C02666
name: coniferyl aldehyde

R METHENYLTHFCYCLOHYDRO DASH RXN
type: Reaction
reactant: 584025
name: methenyltetrahydrofolate cyclohydrolase
product: 584038
is: METHENYLTHFCYCLOHYDRO-RXN
reactant: 584012
reversible: true
notes: GENE_ASSOCIATION: ACIAD2553 or ACIAD2847
fast: false
is: MTHFC

584025
type: SpeciesReference
stoichiometry: 1.0
species: M 5 COMMA 10 DASH METHENYL DASH THF LBRACKET C RBRACKET

M 5 COMMA 10 DASH METHENYL DASH THF LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
is: 5,10-methenyl-thf
constant: false
is: C00445
name: 5,10-methenyl-thf
in compartment: 570138
initial concentration: NaN
is: methf
boundary condition: false

584038
type: SpeciesReference
stoichiometry: 1.0
species: 570186

584012
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M C4 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
is: C04246
initial concentration: NaN
initial amount: NaN
name: trans-but-2-enoyl-acp
constant: false
in compartment: 570138
boundary condition: false
is: but2eACP
has only substance units: false

R ORNCARBAMTRANSFER DASH RXN
type: Reaction
reactant: 616029
name: ornithine carbamoyltransferase
reversible: true
reactant: 616017
is: OCBT
product: 616041
product: 616053
fast: false
is: ORNCARBAMTRANSFER-RXN
notes: GENE_ASSOCIATION: ACIAD1366

616029
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET

616017
type: SpeciesReference
stoichiometry: 1.0
species: M CARBAMOYL DASH P LBRACKET C RBRACKET

M CARBAMOYL DASH P LBRACKET C RBRACKET
type: Species
is: C00169
constant: false
has only substance units: false
initial concentration: NaN
name: carbamoyl-phosphate
boundary condition: false
is: cbp
is: CARBAMOYL-P
in compartment: 570138
initial amount: NaN

616041
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

616053
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH CITRULLINE LBRACKET C RBRACKET

610894
type: Reaction
fast: false
product: 611062
reactant: 610990
reactant: 610930
product: 611074
reactant: 611026
reactant: 610978
reactant: 610906
reactant: 611050
notes: GENE_ASSOCIATION:
reactant: 610942
reactant: 611002
reactant: 611038
name: overall biomass assembly
reactant: 610918
reactant: 610966
reactant: 610954
reversible: false
reactant: 611014

611062
type: SpeciesReference
stoichiometry: 40.0
species: M PI LBRACKET C RBRACKET

610990
type: SpeciesReference
stoichiometry: 0.633
species: 571244

571244
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PROTEIN_W

610930
type: SpeciesReference
stoichiometry: 0.028
species: 570366

570366
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: PEPTIDO_W

611074
type: SpeciesReference
stoichiometry: 40.0
species: M ADP LBRACKET C RBRACKET

611026
type: SpeciesReference
stoichiometry: 40.0
species: M WATER LBRACKET C RBRACKET

610978
type: SpeciesReference
stoichiometry: 0.032
species: 571232

571232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: COFACTOR_W

610906
type: SpeciesReference
stoichiometry: 0.003
species: 570583

570583
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: LPS_W

611050
type: SpeciesReference
stoichiometry: 40.0
species: M ATP LBRACKET C RBRACKET

610942
type: SpeciesReference
stoichiometry: 0.032
species: 571160

571160
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: DNA_W

611002
type: SpeciesReference
stoichiometry: 0.006
species: 571136

611038
type: SpeciesReference
stoichiometry: 0.021
species: 570931

570931
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: POLYSACCH_FREE_W

610918
type: SpeciesReference
stoichiometry: 0.2
species: 570847

570847
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: RNA_W

610966
type: SpeciesReference
stoichiometry: 0.041
species: 570354

570354
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PL_W

610954
type: SpeciesReference
stoichiometry: 0.002
species: 570342

611014
type: SpeciesReference
stoichiometry: 0.002
species: 571112

571112
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: AFATTYACID_FREE_W

R RIBOFLAVINSYNREDUC DASH RXN
type: Reaction
reactant: 590150
name: 5-amino-6-(5- phosphoribosylamino)uracil reductase (htp reductase)
is: APRAUR
fast: false
reactant: 590162
notes: GENE_ASSOCIATION: ACIAD0247
product: 590186
is: RIBOFLAVINSYNREDUC-RXN
product: 590174
reversible: true

590150
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE DASH P LBRACKET C RBRACKET

M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE DASH P LBRACKET C RBRACKET
type: Species
name: 5-amino-6-(ribosylamino)-2,4-(1h,3h)-pyrimidinedione 5'-phosphate
initial concentration: NaN
is: AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE-P
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
is: 5apru
is: C01268
in compartment: 570138

590162
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

590186
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH DIOXY DASH PHOSPHORIBITYLAMINO DASH PYR LBRACKET C RBRACKET

M AMINO DASH DIOXY DASH PHOSPHORIBITYLAMINO DASH PYR LBRACKET C RBRACKET
type: Species
has only substance units: false
is: 5aprbu
is: C04454
initial concentration: NaN
in compartment: 570138
is: AMINO-DIOXY-PHOSPHORIBITYLAMINO-PYR
name: 5-amino-2,6-dioxy-4-(5'-phosphoribitylamino)pyrimidine
constant: false
boundary condition: false
initial amount: NaN

590174
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R CITSYN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2886
product: 588310
reversible: false
reactant: 588274
is: CITSYN-RXN
product: 588298
reactant: 588262
reactant: 588286
name: citrate (si)-synthase
is: CS
fast: false

588310
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

588274
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

588298
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET

588262
type: SpeciesReference
stoichiometry: 1.0
species: 570883

588286
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

598031
type: Reaction
reactant: 598043
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of inosine

598043
type: SpeciesReference
stoichiometry: 1.0
species: M INOSINE LBRACKET E RBRACKET

M INOSINE LBRACKET E RBRACKET
type: Species
is: C00294
initial amount: NaN
has only substance units: false
initial concentration: NaN
boundary condition: false
is: ins
in compartment: 570126
name: inosine
is: INOSINE
constant: false

R HOMOSERDEHYDROG DASH RXN
type: Reaction
reactant: 583495
product: 583507
is: HSDy
reversible: true
reactant: 583483
name: homoserine dehydrogenase
product: 583519
fast: false
notes: GENE_ASSOCIATION: ACIAD0264
is: HOMOSERDEHYDROG-RXN

583495
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

583507
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET C RBRACKET

M HOMO DASH SER LBRACKET C RBRACKET
type: Species
is: hom-L
has only substance units: false
constant: false
in compartment: 570138
name: homoserine
is: HOMO-SER
is: C00263
boundary condition: false
initial concentration: NaN
initial amount: NaN

583483
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET

583519
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R TRANS DASH RXN DASH INOSINE
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2389
product: 586482
reactant: 586470
is: INSt2rpp
reversible: true
reactant: 586458
product: 586494
name: transport of inosine [extraorganism;cytosol](secondary symport)
fast: false
is: RXN0-18

586482
type: SpeciesReference
stoichiometry: 1.0
species: M INOSINE LBRACKET C RBRACKET

586470
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

586458
type: SpeciesReference
stoichiometry: 1.0
species: M INOSINE LBRACKET E RBRACKET

586494
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

570475
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-SN-GLYCEROL-3P_PL

M HOMO DASH CYS LBRACKET C RBRACKET
type: Species
is: hcys-L
is: C00155
name: homocysteine
initial amount: NaN
is: HOMO-CYS
boundary condition: false
constant: false
initial concentration: NaN
in compartment: 570138
has only substance units: false

M CPD DASH 104 LBRACKET P RBRACKET
type: Species
has only substance units: false
is: C01359
boundary condition: false
name: pqqh2
initial amount: NaN
in compartment: 570114
is: CPD-104
constant: false
initial concentration: NaN

M UDP DASH GLACTOSE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
name: udp-galactose
is: udpgal
has only substance units: false
constant: false
is: UDP-GLACTOSE
boundary condition: false
is: C00052
in compartment: 570138

R IMP DASH DEHYDROG DASH RXN
type: Reaction
reactant: 595466
is: IMPD
reactant: 595490
name: imp dehydrogenase
fast: false
reactant: 595478
product: 595502
is: IMP-DEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD3503
product: 595514
reversible: true

595466
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

595490
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

595478
type: SpeciesReference
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET

595502
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

595514
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
is: C00655
boundary condition: false
constant: false
in compartment: 570138
name: xanthosine-5-phosphate
is: XANTHOSINE-5-PHOSPHATE
has only substance units: false
is: xmp

577527
type: Reaction
reactant: 577539
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-guanidinobutanoate

577539
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET E RBRACKET

R 5 APOST DASH NUCLEOTID DASH RXN
type: Reaction
name: ump nucleotidase
reversible: false
reactant: 589391
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
product: 589403
reactant: 589379
is: |5'-NUCLEOTID-RXN|
product: 589415
is: NTD2pp
fast: false

589391
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

589403
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

589379
type: SpeciesReference
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET

589415
type: SpeciesReference
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET

M URIDINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: uridine
is: C00299
boundary condition: false
is: uri
constant: false
initial amount: NaN
is: URIDINE
has only substance units: false
initial concentration: NaN

M 8 DASH AMINO DASH 7 DASH OXONONANOATE LBRACKET C RBRACKET
type: Species
is: C01092
name: 8-amino-7-oxononanoate
is: 8aonn
constant: false
initial amount: NaN
in compartment: 570138
initial concentration: NaN
has only substance units: false
is: 8-AMINO-7-OXONONANOATE
boundary condition: false

R R9 DASH RXN
type: Reaction
product: 575601
reactant: 575589
reactant: 575577
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD1608 or ACIAD1701
is: R9-RXN
fast: false
reversible: true
name: crotonyl-coa hydratase

575601
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 650 LBRACKET C RBRACKET

M CPD DASH 650 LBRACKET C RBRACKET
type: Species
has only substance units: false
in compartment: 570138
is: CPD-650
constant: false
name: 3-hydroxybutyryl-coa
initial concentration: NaN
initial amount: NaN
is: 3hbcoa
boundary condition: false
is: C01144

575589
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

575577
type: SpeciesReference
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET

M CROTONYL DASH COA LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C00877
is: b2coa
initial concentration: NaN
is: CROTONYL-COA
constant: false
initial amount: NaN
in compartment: 570138
boundary condition: false
name: crotonyl-coa

595671
type: Reaction
reactant: 595684
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of salicylate

595684
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET E RBRACKET

M CPD DASH 110 LBRACKET E RBRACKET
type: Species
boundary condition: false
is: C00805
constant: false
has only substance units: false
initial concentration: NaN
in compartment: 570126
is: CPD-110
initial amount: NaN
name: salicylate

R ACETYLGLUTKIN DASH RXN
type: Reaction
is: ACGK
reversible: true
product: 611881
fast: false
name: acetylglutamate kinase
product: 611869
is: ACETYLGLUTKIN-RXN
reactant: 611857
reactant: 611845
notes: GENE_ASSOCIATION: ACIAD0903

611881
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

611869
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ACETYL DASH GLUTAMYL DASH P LBRACKET C RBRACKET

M N DASH ACETYL DASH GLUTAMYL DASH P LBRACKET C RBRACKET
type: Species
initial concentration: NaN
constant: false
initial amount: NaN
is: N-ACETYL-GLUTAMYL-P
is: C04133
name: n-acetylglutamyl-phosphate
is: acg5p
boundary condition: false
in compartment: 570138
has only substance units: false

611857
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

611845
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH GLU LBRACKET C RBRACKET

M ACETYL DASH GLU LBRACKET C RBRACKET
type: Species
name: n-acetyl-l-glutamate
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
is: acglu
is: ACETYL-GLU
is: C00624
initial concentration: NaN
in compartment: 570138

R CTPSYN DASH RXN
type: Reaction
product: 580226
product: 580214
name: ctp synthase
reactant: 580189
fast: false
reactant: 580153
is: CTPS2
reactant: 580177
is: CTPSYN-RXN
product: 580202
notes: GENE_ASSOCIATION: ACIAD2003
product: 580238
reversible: false
reactant: 580165

580226
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

580214
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

580189
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

580153
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

580177
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580202
type: SpeciesReference
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET

580238
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

580165
type: SpeciesReference
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET

M ASN DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: trnaasn
is: C01637
in compartment: 570138
is: ASN-TRNAS
initial concentration: NaN
initial amount: NaN
constant: false
name: asparagine trna

M SALICYLALDEHYDE LBRACKET C RBRACKET
type: Species
is: SALICYLALDEHYDE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: salicylaldehyde

R RXNIM DASH 3902
type: Reaction
product: 582230
name: gluconate permease
reversible: false
notes: GENE_ASSOCIATION: ACIAD0544
is: GLCNt2rpp
fast: false
is: RXNIM-3902
reactant: 582206
product: 582242
reactant: 582218

582230
type: SpeciesReference
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET

582206
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET

582242
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET

M GLUCONATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial amount: NaN
has only substance units: false
is: glcn
constant: false
boundary condition: false
initial concentration: NaN
is: GLUCONATE
name: gluconate
is: C00257

582218
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET P RBRACKET

R TRANS DASH RXN DASH QUINATE
type: Reaction
product: 585929
reactant: 585917
notes: GENE_ASSOCIATION: ACIAD1715 or ACIAD2984
is: TRANS-RXNIM-5918
fast: false
reversible: true
name: transport of quinate [extraorganism;periplasm](passive)

585929
type: SpeciesReference
stoichiometry: 1.0
species: M QUINATE LBRACKET P RBRACKET

M QUINATE LBRACKET P RBRACKET
type: Species
is: QUINATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570114
name: quinate

585917
type: SpeciesReference
stoichiometry: 1.0
species: M QUINATE LBRACKET E RBRACKET

M QUINATE LBRACKET E RBRACKET
type: Species
is: QUINATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: quinate

M CHARGED DASH VAL DASH TRNAS LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
is: valtrna
initial amount: NaN
is: C02554
constant: false
is: CHARGED-VAL-TRNAS
boundary condition: false
name: charged valine trna
has only substance units: false

M HISTIDINAL LBRACKET C RBRACKET
type: Species
is: HISTIDINAL
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: histidinal

M ASP DASH TRNAS LBRACKET C RBRACKET
type: Species
is: trnaasp
has only substance units: false
constant: false
is: ASP-TRNAS
is: C01638
in compartment: 570138
initial concentration: NaN
boundary condition: false
initial amount: NaN
name: aspartate trna

R TRANS DASH RXN DASH SUBERATE
type: Reaction
name: transport of suberate [extraorganism;cytosol](secondary symport)
fast: false
notes: GENE_ASSOCIATION: ACIAD1694
reactant: 596382
is: TRANS-RXNIM-5912
product: 596406
reactant: 596370
reversible: true
product: 596394

596382
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

596406
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

596370
type: SpeciesReference
stoichiometry: 1.0
species: M SUBERATE LBRACKET E RBRACKET

M SUBERATE LBRACKET E RBRACKET
type: Species
is: C08278
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: suberate

596394
type: SpeciesReference
stoichiometry: 1.0
species: M SUBERATE LBRACKET C RBRACKET

M SUBERATE LBRACKET C RBRACKET
type: Species
is: C08278
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: suberate

582822
type: Reaction
reactant: 582834
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-proline

582834
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET E RBRACKET

R HISTAMINOTRANS DASH RXN
type: Reaction
fast: false
name: histidinol-phosphate aminotransferase
reactant: 607182
notes: GENE_ASSOCIATION: ACIAD0664
is: HSTPT
product: 607218
product: 607206
is: HISTAMINOTRANS-RXN
reversible: true
reactant: 607194

607182
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

607218
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH HISTIDINOL DASH P LBRACKET C RBRACKET

M L DASH HISTIDINOL DASH P LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: hisp
is: L-HISTIDINOL-P
is: C01100
in compartment: 570138
initial amount: NaN
initial concentration: NaN
constant: false
name: l-histidinol-phosphate

607206
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

607194
type: SpeciesReference
stoichiometry: 1.0
species: M IMIDAZOLE DASH ACETOL DASH P LBRACKET C RBRACKET

M IMIDAZOLE DASH ACETOL DASH P LBRACKET C RBRACKET
type: Species
is: C01267
initial concentration: NaN
initial amount: NaN
name: imidazole acetol-phosphate
has only substance units: false
is: IMIDAZOLE-ACETOL-P
boundary condition: false
is: imacp
in compartment: 570138
constant: false

M CPD DASH 1772 LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C06735
is: aacald
name: aminoacetaldehyde
constant: false
is: CPD-1772
boundary condition: false
initial concentration: NaN
initial amount: NaN
has only substance units: false

R C14 COLON 1 LPAREN C5 RPAREN DASH COATRANSFERASE DASH RXN
type: Reaction
is: ACYLCOASYN-RXN
reactant: 604186
reversible: false
reactant: 604162
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 604174
product: 604223
name: acyl coa transferase (c14:1(c5))
fast: false
product: 604198
product: 604211

604186
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

604162
type: SpeciesReference
stoichiometry: 1.0
species: 570643

570643
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-tetradec-4-enoate

604174
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

604223
type: SpeciesReference
stoichiometry: 1.0
species: 570607

570607
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-tetradec-4-enoyl-coa

604198
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

604211
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R RXN0 DASH 2044
type: Reaction
reactant: 603754
name: 3-hydroxyadipyl-coa dehydrogenase
product: 603790
reactant: 603766
product: 603778
notes: GENE_ASSOCIATION: ACIAD1690
is: RXN0-2044
fast: false
reversible: false

603754
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

603790
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

603766
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH HYDROXYADIPYL DASH COA LBRACKET C RBRACKET

603778
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPYL DASH COA LBRACKET C RBRACKET

591439
type: Reaction
reactant: 591451
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of purine

591451
type: SpeciesReference
stoichiometry: 1.0
species: M PURINE LBRACKET E RBRACKET

M PURINE LBRACKET E RBRACKET
type: Species
is: C15587
has only substance units: false
initial concentration: NaN
boundary condition: false
constant: false
is: PURINE
name: purine
in compartment: 570126
initial amount: NaN

570968
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-octadec-2,9-enoyl-acp

M C18 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
is: 3hodcoa
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxyoctadecanoyl-coa

R TRANS DASH RXN DASH DEOXYGUANOSINE
type: Reaction
name: transport of deoxyguanosine [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD2389
is: RXNIM-6215
reversible: false
fast: false
product: 602057
reactant: 602021
reactant: 602033
is: DGSNt2pp
product: 602045

602057
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET C RBRACKET

M DEOXYGUANOSINE LBRACKET C RBRACKET
type: Species
is: C00330
has only substance units: false
initial amount: NaN
name: deoxyguanosine
constant: false
is: dgsn
boundary condition: false
initial concentration: NaN
in compartment: 570138
is: DEOXYGUANOSINE

602021
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET E RBRACKET

602033
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

602045
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R P DASH PANTOCYSDECARB DASH RXN
type: Reaction
product: 597803
is: PPCDC
fast: false
is: P-PANTOCYSDECARB-RXN
reactant: 597777
product: 597790
notes: GENE_ASSOCIATION: ACIAD3125
reversible: false
name: phosphopantothenoylcysteine decarboxylase

597803
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

597777
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH PHOSPHOPANTOTHENOYLCYSTEINE LBRACKET C RBRACKET

M 4 DASH PHOSPHOPANTOTHENOYLCYSTEINE LBRACKET C RBRACKET
type: Species
has only substance units: false
name: 4'-phospho-n-pantothenoylcysteine
constant: false
is: 4ppcys
is: C04352
is: 4-PHOSPHOPANTOTHENOYLCYSTEINE
initial concentration: NaN
in compartment: 570138
boundary condition: false
initial amount: NaN

597790
type: SpeciesReference
stoichiometry: 1.0
species: M PANTETHEINE DASH P LBRACKET C RBRACKET

R UDPNACETYLGLUCOSAMENOLPYRTRANS DASH RXN
type: Reaction
is: UAGCVT
name: udp-n-acetylglucosamine 1-carboxyvinyltransferase
product: 578886
is: UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN
reactant: 578874
reactant: 578862
reversible: false
notes: GENE_ASSOCIATION: ACIAD0660
fast: false
product: 578898

578886
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

578874
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

578862
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET

578898
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH ACETYL DASH CARBOXYVINYL DASH GLUCOSAMINE LBRACKET C RBRACKET

M UDP DASH ACETYL DASH CARBOXYVINYL DASH GLUCOSAMINE LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
is: uaccg
is: C04631
has only substance units: false
constant: false
is: UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE
boundary condition: false
in compartment: 570138
name: udp-n-acetyl-3-(1-carboxyvinyl)-d-glucosamine

R HISTIDINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
fast: false
reactant: 615284
name: histidine--trna ligase
product: 615296
notes: GENE_ASSOCIATION: ACIAD0562
is: HISTRS
reactant: 615260
reactant: 615272
product: 615320
product: 615308
reversible: false
is: HISTIDINE--TRNA-LIGASE-RXN

615284
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

615296
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

615260
type: SpeciesReference
stoichiometry: 1.0
species: M HIS LBRACKET C RBRACKET

615272
type: SpeciesReference
stoichiometry: 1.0
species: M HIS DASH TRNAS LBRACKET C RBRACKET

M HIS DASH TRNAS LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
name: histidine trna
is: trnahis
boundary condition: false
initial concentration: NaN
in compartment: 570138
constant: false
is: C01643
is: HIS-TRNAS

615320
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

615308
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH HIS DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH HIS DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
name: charged histidine trna
is: C02988
constant: false
has only substance units: false
initial amount: NaN
is: CHARGED-HIS-TRNAS
in compartment: 570138
is: histrna
initial concentration: NaN

R BUTYRYL DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 586254
is: ACOAD1f
is: BUTYRYL-COA-DEHYDROGENASE-RXN
reactant: 586242
name: butyryl-coa dehydrogenase
fast: false
reversible: false
product: 586266
reactant: 586230
notes: GENE_ASSOCIATION: ACIAD1412

586254
type: SpeciesReference
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET

586242
type: SpeciesReference
stoichiometry: 1.0
species: M BUTYRYL DASH COA LBRACKET C RBRACKET

M BUTYRYL DASH COA LBRACKET C RBRACKET
type: Species
boundary condition: false
is: btcoa
name: butanoyl-coa
has only substance units: false
is: BUTYRYL-COA
is: C00136
in compartment: 570138
initial amount: NaN
constant: false
initial concentration: NaN

586266
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

586230
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

R DCMP DASH NUCLEOTIDASE DASH RXN
type: Reaction
reactant: 613531
name: dcmp nucleotidase
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
product: 613555
reversible: false
reactant: 613518
fast: false
is: RXNIM-6194
product: 613543
is: NTD3

613531
type: SpeciesReference
stoichiometry: 1.0
species: M DCMP LBRACKET C RBRACKET

613555
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET C RBRACKET

M DEOXYCYTIDINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
initial amount: NaN
name: deoxycytidine
boundary condition: false
in compartment: 570138
is: C00881
is: dcyt
constant: false
is: DEOXYCYTIDINE

613518
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

613543
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R TRANS DASH RXN DASH 62B
type: Reaction
product: 583363
notes: GENE_ASSOCIATION: ACIAD0118 or ACIAD2662
name: transport of glycine [extraorganism;cytosol](secondary symport)
reversible: false
is: TRANS-RXN-62B
reactant: 583351
product: 583375
is: GLYt2pp
reactant: 583339
fast: false

583363
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

583351
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

583375
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

583339
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET E RBRACKET

M GLY LBRACKET E RBRACKET
type: Species
is: gly
is: GLY
initial concentration: NaN
in compartment: 570126
has only substance units: false
constant: false
is: C00037
name: glycine
initial amount: NaN
boundary condition: false

M CIS DASH ACONITATE LBRACKET C RBRACKET
type: Species
constant: false
name: cis-aconitate
initial concentration: NaN
in compartment: 570138
is: C00417
boundary condition: false
is: CIS-ACONITATE
is: acon-C
has only substance units: false
initial amount: NaN

M THYMIDINE LBRACKET E RBRACKET
type: Species
constant: false
initial amount: NaN
in compartment: 570126
name: thymidine
boundary condition: false
is: C00214
is: thymd
initial concentration: NaN
is: THYMIDINE
has only substance units: false

M DTDP DASH DEOH DASH DEOXY DASH MANNOSE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: DTDP-DEOH-DEOXY-MANNOSE
initial amount: NaN
boundary condition: false
is: C00688
name: dtdp-4-dehydro-6-deoxy-l-mannose
in compartment: 570138
constant: false
has only substance units: false
is: dtdp4d6dm

M DEMETHYLMENAQUINONE LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
name: demethylmenaquinone
initial concentration: NaN
is: DEMETHYLMENAQUINONE
constant: false
has only substance units: false
is: C05818
in compartment: 570138
is: 2dmmq8

R 2 DASH METHYLCITRATE DASH DEHYDRATASE DASH RXN
type: Reaction
reversible: true
is: MCITD
product: 612026
name: 2-methylcitrate dehydratase
is: 2-METHYLCITRATE-DEHYDRATASE-RXN
product: 612014
notes: GENE_ASSOCIATION: ACIAD2755
fast: false
reactant: 612002

612026
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

612014
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1136 LBRACKET C RBRACKET

M CPD DASH 1136 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
name: 2-methyl-cis-aconitate
is: 2mcacn
constant: false
is: C04225
in compartment: 570138
is: CPD-1136
boundary condition: false
initial amount: NaN
has only substance units: false

612002
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 622 LBRACKET C RBRACKET

M CPD DASH 622 LBRACKET C RBRACKET
type: Species
boundary condition: false
name: 2-methylcitrate
initial concentration: NaN
constant: false
is: 2mcit
initial amount: NaN
has only substance units: false
in compartment: 570138
is: C02225
is: CPD-622

R DGDPKIN DASH RXN
type: Reaction
product: 571666
notes: GENE_ASSOCIATION: ACIAD0556
fast: false
reactant: 571630
is: DGDPKIN-RXN
reactant: 571642
reversible: true
is: NDPK5
product: 571654
name: dgdp kinase

571666
type: SpeciesReference
stoichiometry: 1.0
species: M DGTP LBRACKET C RBRACKET

M DGTP LBRACKET C RBRACKET
type: Species
name: dgtp
is: C00286
has only substance units: false
initial amount: NaN
in compartment: 570138
initial concentration: NaN
is: dgtp
constant: false
boundary condition: false
is: DGTP

571630
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

571642
type: SpeciesReference
stoichiometry: 1.0
species: M DGDP LBRACKET C RBRACKET

571654
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

596875
type: Reaction
reactant: 596887
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-aspartate

596887
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET

R UDP DASH NACMUR DASH ALA DASH LIG DASH RXN
type: Reaction
fast: false
product: 584917
is: UAMAS
reactant: 584869
name: udp-n-acetylmuramate--alanine ligase
reversible: false
product: 584893
notes: GENE_ASSOCIATION: ACIAD3516
is: UDP-NACMUR-ALA-LIG-RXN
reactant: 584857
reactant: 584881
product: 584905

584917
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH ACETYLMURAMOYL DASH ALA LBRACKET C RBRACKET

M UDP DASH ACETYLMURAMOYL DASH ALA LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
is: C01212
constant: false
is: uama
boundary condition: false
name: udp-n-acetylmuramoyl-l-alanine
has only substance units: false
in compartment: 570138
is: UDP-ACETYLMURAMOYL-ALA

584869
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET

M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
boundary condition: false
in compartment: 570138
is: L-ALPHA-ALANINE
is: C00041
initial amount: NaN
name: l-alanine
is: ala-L
constant: false

584893
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

584857
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYLMURAMATE LBRACKET C RBRACKET

M UDP DASH N DASH ACETYLMURAMATE LBRACKET C RBRACKET
type: Species
is: uamr
has only substance units: false
is: UDP-N-ACETYLMURAMATE
constant: false
name: udp-n-acetylmuramate
is: C01050
initial amount: NaN
in compartment: 570138
initial concentration: NaN
boundary condition: false

584881
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

584905
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R RXNIM DASH 3886
type: Reaction
reactant: 576587
fast: false
is: GLCDpp
is: RXNIM-3886
notes: GENE_ASSOCIATION: ACIAD2983
name: glucose dehydrogenase [pyrroloquinoline-quinone]
reversible: false
reactant: 576575
product: 576599
product: 576611

576587
type: SpeciesReference
stoichiometry: 1.0
species: M GLC LBRACKET P RBRACKET

M GLC LBRACKET P RBRACKET
type: Species
constant: false
is: GLC
initial concentration: NaN
boundary condition: false
in compartment: 570114
is: glc-D
has only substance units: false
name: beta-d-glucose
initial amount: NaN
is: C00031

576575
type: SpeciesReference
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET

576599
type: SpeciesReference
stoichiometry: 1.0
species: M GLC DASH D DASH LACTONE LBRACKET P RBRACKET

576611
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET

R C16 COLON 1 LPAREN C7 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
fast: false
name: 3oxoacyl-coa thiolase (c16:1(c7))
product: 593512
is: KETOACYLCOATHIOL-RXN
product: 593499
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
reversible: true
reactant: 593487
reactant: 593475

593512
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

593499
type: SpeciesReference
stoichiometry: 1.0
species: 570607

593487
type: SpeciesReference
stoichiometry: 1.0
species: 570691

593475
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

M SUCC DASH S DASH ALD LBRACKET C RBRACKET
type: Species
is: SUCC-S-ALD
initial amount: NaN
in compartment: 570138
constant: false
boundary condition: false
is: C00232
name: succinate semialdehyde
is: sucsal
has only substance units: false
initial concentration: NaN

615860
type: Reaction
reactant: 615872
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of succinate

615872
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET E RBRACKET

M SUC LBRACKET E RBRACKET
type: Species
is: succ
constant: false
initial amount: NaN
is: SUC
is: C00042
has only substance units: false
initial concentration: NaN
in compartment: 570126
name: succinate
boundary condition: false

609619
type: Reaction
product: 609643
reactant: 609631
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 4-guanidinobutanoate [extraorganism;cytosol](passive)

609643
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET C RBRACKET

609631
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET E RBRACKET

M GLUCOSAMINE DASH 1P LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
in compartment: 570138
is: GLUCOSAMINE-1P
is: C06156
name: glucosamine-1p
has only substance units: false
is: gam1p
initial concentration: NaN
constant: false

R ATP DASH PYROPHOSPHATASE DASH RXN
type: Reaction
reversible: false
reactant: 580298
name: atp pyrophosphatase
product: 580322
is: NTPP6
notes: GENE_ASSOCIATION: ACIAD3065
fast: false
reactant: 580310
is: ATP-PYROPHOSPHATASE-RXN
product: 580334

580298
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580322
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

580310
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

580334
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

M NITRITE LBRACKET E RBRACKET
type: Species
has only substance units: false
is: no2
constant: false
is: C00088
in compartment: 570126
initial amount: NaN
name: no2-
initial concentration: NaN
is: NITRITE
boundary condition: false

R C12 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
name: enoyl-coa hydratase (c12:0)
reactant: 593572
is: ENOYL-COA-HYDRAT-RXN
is: ECOAH5
product: 593584
fast: false
reversible: false
reactant: 593560

593572
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

593584
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

M C12 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
is: C05262
name: 3-hydroxydodecanoyl-coa
constant: false
is: 3hddcoa
initial concentration: NaN
in compartment: 570138
initial amount: NaN

593560
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C12 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: dd2coa
name: trans-dodec-2-enoyl-coa
boundary condition: false
is: C03221
initial concentration: NaN
constant: false
has only substance units: false
initial amount: NaN

R ASPAMINOTRANS DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2574 or ACIAD2087
reactant: 591151
name: aspartate aminotransferase
product: 591175
reversible: true
product: 591163
fast: false
is: ASPAMINOTRANS-RXN
reactant: 591139
is: ASPTA

591151
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

591175
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

591163
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

591139
type: SpeciesReference
stoichiometry: 1.0
species: 570883

M DIHYDROXY DASH BUTANONE DASH P LBRACKET C RBRACKET
type: Species
in compartment: 570138
boundary condition: false
has only substance units: false
initial amount: NaN
is: DIHYDROXY-BUTANONE-P
name: 3,4-dihydroxy-2-butanone-4-p
initial concentration: NaN
constant: false
is: db4p

R PANTOTHENATE DASH KIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0840
is: PNTK
product: 615236
reactant: 615212
reactant: 615224
reversible: true
fast: false
is: PANTOTHENATE-KIN-RXN
name: pantothenate kinase
product: 615248

615236
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH P DASH PANTOTHENATE LBRACKET C RBRACKET

615212
type: SpeciesReference
stoichiometry: 1.0
species: M PANTOTHENATE LBRACKET C RBRACKET

M PANTOTHENATE LBRACKET C RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
is: C00864
boundary condition: false
name: pantothenate
in compartment: 570138
is: PANTOTHENATE
is: pnto-R
constant: false
initial amount: NaN

615224
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

615248
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R C10 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
reactant: 618803
product: 618863
is: ACYLCOASYN-RXN
reactant: 618827
reactant: 618815
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
product: 618851
fast: false
product: 618839
is: FACOAL100t2pp
reversible: false
name: acyl coa transferase (c10:0)

618803
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET C RBRACKET

618863
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

618827
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

618815
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

618851
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET

618839
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R INOSINE DASH NUCLEOSIDASE DASH RXN
type: Reaction
fast: false
reactant: 572303
is: INOSINE-NUCLEOSIDASE-RXN
product: 572339
name: inosine nucleosidase
reactant: 572315
notes: GENE_ASSOCIATION: ACIAD2386
product: 572327
reversible: false
is: INSH

572303
type: SpeciesReference
stoichiometry: 1.0
species: M INOSINE LBRACKET C RBRACKET

572339
type: SpeciesReference
stoichiometry: 1.0
species: M HYPOXANTHINE LBRACKET C RBRACKET

M HYPOXANTHINE LBRACKET C RBRACKET
type: Species
has only substance units: false
constant: false
is: hxan
boundary condition: false
is: HYPOXANTHINE
initial concentration: NaN
is: C00262
in compartment: 570138
name: hypoxanthine
initial amount: NaN

572315
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

572327
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET

R C6 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
is: 3-OXOACYL-ACP-SYNTH-RXN
product: 617260
reactant: 617236
fast: false
product: 617248
reactant: 617224
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
reversible: false
is: 3OAS60
product: 617272
name: 3oxoacyl-acp synthase (c6:0)

617260
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

617236
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

617248
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

617224
type: SpeciesReference
stoichiometry: 1.0
species: M C4 COLON 0 DASH ACP LBRACKET C RBRACKET

617272
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

M DTDP DASH D DASH GLUCOSE LBRACKET C RBRACKET
type: Species
initial amount: NaN
name: dtdp-d-glucose
in compartment: 570138
constant: false
initial concentration: NaN
is: C00842
has only substance units: false
is: dtdpglu
is: DTDP-D-GLUCOSE
boundary condition: false

R DLACTDEHYDROGNAD DASH RXN
type: Reaction
is: LDH D
product: 580602
reactant: 580590
reversible: false
product: 580614
notes: GENE_ASSOCIATION: ACIAD0109
is: DLACTDEHYDROGNAD-RXN
fast: false
name: d-lactate dehydrogenase, nad
reactant: 580578

580602
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

580590
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

580614
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

580578
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET

M D DASH LACTATE LBRACKET C RBRACKET
type: Species
has only substance units: false
name: d-lactate
is: D-LACTATE
in compartment: 570138
boundary condition: false
is: C00256
initial concentration: NaN
is: lac-D
initial amount: NaN
constant: false

R NAD DASH SYNTH DASH GLN DASH RXN
type: Reaction
product: 574264
reactant: 574192
is: NAD-SYNTH-GLN-RXN
reactant: 574204
product: 574228
product: 574252
reversible: true
product: 574240
fast: false
name: nad(+) synthase (glutamine-hydrolysing)
reactant: 574216
notes: GENE_ASSOCIATION: ACIAD2888
reactant: 574180

574264
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

574192
type: SpeciesReference
stoichiometry: 1.0
species: M DEAMIDO DASH NAD LBRACKET C RBRACKET

574204
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

574228
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

574252
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

574240
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

574216
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

574180
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5753
type: Reaction
reactant: 605909
reactant: 605897
product: 605957
is: TRANS-RXNIM-5753
reactant: 605921
fast: false
is: METDabcpp
product: 605933
name: transport of d-methionine [extraorganism;cytosol](primary active atp)
product: 605945
reversible: false
notes: GENE_ASSOCIATION: ACIAD2068 and ACIAD2069 and ACIAD2070 or ACIAD2449 and ACIAD2450 and ACIAD2451

605909
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

605897
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 218 LBRACKET E RBRACKET

605957
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

605921
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

605933
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

605945
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 218 LBRACKET C RBRACKET

M CPD DASH 218 LBRACKET C RBRACKET
type: Species
is: C00855
initial amount: NaN
is: CPD-218
is: met-D
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN
name: d-methionine
boundary condition: false

R TRANS DASH RXN DASH 27 DASH BIS
type: Reaction
reactant: 608121
product: 608145
name: transport of 3-dehydro-shikimate [periplasm;cytosol](secondary symport)
reactant: 608133
reversible: false
is: TRANS-RXN-27
fast: false
product: 608157
notes: GENE_ASSOCIATION: ACIAD0223

608121
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET

608145
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET

608133
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

608157
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R TRANS DASH RXN DASH ADENOSINE
type: Reaction
reactant: 574421
product: 574445
product: 574457
fast: false
is: ADNt2rpp
reactant: 574433
notes: GENE_ASSOCIATION: ACIAD2389
reversible: true
is: TRANS-RXN-108A
name: transport of adenosine [extraorganism;cytosol](secondary symport)

574421
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSINE LBRACKET E RBRACKET

M ADENOSINE LBRACKET E RBRACKET
type: Species
is: ADENOSINE
boundary condition: false
initial amount: NaN
has only substance units: false
is: C00212
in compartment: 570126
is: adn
initial concentration: NaN
constant: false
name: adenosine

574445
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

574457
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET

M ADENOSINE LBRACKET C RBRACKET
type: Species
is: adn
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
initial concentration: NaN
is: ADENOSINE
is: C00212
name: adenosine

574433
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

596995
type: Reaction
product: 597031
reactant: 597019
reversible: true
product: 597055
notes: GENE_ASSOCIATION: ACIAD3383
product: 597043
name: fatty acyl-coa reductase (c16:0)
reactant: 597007
fast: false

597031
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

597019
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

597055
type: SpeciesReference
stoichiometry: 1.0
species: 571004

571004
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: C16:0-ALDEHYDE

597043
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

597007
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET

614678
type: Reaction
reactant: 614691
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-galactarate

614691
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET E RBRACKET

M D DASH GALACTARATE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
is: galct-D
constant: false
is: C00879
is: D-GALACTARATE
name: d-galactarate
has only substance units: false
in compartment: 570126
initial amount: NaN

596418
type: Reaction
reactant: 596430
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-tryptophan

596430
type: SpeciesReference
stoichiometry: 1.0
species: M TRP LBRACKET E RBRACKET

M TRP LBRACKET E RBRACKET
type: Species
constant: false
in compartment: 570126
boundary condition: false
name: l-tryptophan
is: C00078
is: TRP
is: trp-L
has only substance units: false
initial concentration: NaN
initial amount: NaN

M CYS DASH TRNAS LBRACKET C RBRACKET
type: Species
is: trnacys
name: cysteine trna
in compartment: 570138
constant: false
is: C01639
has only substance units: false
initial concentration: NaN
boundary condition: false
is: CYS-TRNAS
initial amount: NaN

M C10 COLON 0 LBRACKET E RBRACKET
type: Species
in compartment: 570126
is: CPD-3617
boundary condition: false
initial concentration: NaN
constant: false
is: dca
initial amount: NaN
is: C01571
has only substance units: false
name: decanoate

R THREDEHYD DASH RXN
type: Reaction
name: threonine dehydratase
fast: false
product: 573411
product: 573399
is: THRD L
is: THREDEHYD-RXN
reactant: 573387
notes: GENE_ASSOCIATION: ACIAD1357
reversible: false

573411
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH OXOBUTANOATE LBRACKET C RBRACKET

M 2 DASH OXOBUTANOATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: 2-oxobutanoate
constant: false
is: C00109
has only substance units: false
boundary condition: false
is: 2obut
in compartment: 570138
is: 2-OXOBUTANOATE

573399
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

573387
type: SpeciesReference
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET

R PGLUCISOM DASH RXN
type: Reaction
product: 589644
reactant: 589632
notes: GENE_ASSOCIATION: ACIAD0101
is: PGLUCISOM-RXN
is: PGI
fast: false
reversible: true
name: glucose-6-phosphate isomerase

589644
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET

589632
type: SpeciesReference
stoichiometry: 1.0
species: M GLC DASH 6 DASH P LBRACKET C RBRACKET

M GLC DASH 6 DASH P LBRACKET C RBRACKET
type: Species
constant: false
name: glucose-6-phosphate
is: C01172
is: GLC-6-P
is: g6p-B
boundary condition: false
initial concentration: NaN
in compartment: 570138
initial amount: NaN
has only substance units: false

575613
type: Reaction
reactant: 575625
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of (r)-3-hydroxybutanoate

575625
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET E RBRACKET

M CPD DASH 335 LBRACKET E RBRACKET
type: Species
name: (r)-3-hydroxybutanoate
is: bhb
is: CPD-335
constant: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
is: C01089
boundary condition: false
in compartment: 570126

616065
type: Reaction
reactant: 616077
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyuridine

616077
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYURIDINE LBRACKET E RBRACKET

M DEOXYURIDINE LBRACKET E RBRACKET
type: Species
constant: false
is: duri
initial amount: NaN
in compartment: 570126
is: DEOXYURIDINE
initial concentration: NaN
is: C00526
name: deoxyuridine
boundary condition: false
has only substance units: false

R ASPARTATE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reactant: 595406
product: 595430
reactant: 595394
is: ASPTRS
product: 595454
product: 595442
is: ASPARTATE--TRNA-LIGASE-RXN
reactant: 595418
reversible: false
notes: GENE_ASSOCIATION: ACIAD0609
fast: false
name: aspartate--trna ligase

595406
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

595430
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

595394
type: SpeciesReference
stoichiometry: 1.0
species: M ASP DASH TRNAS LBRACKET C RBRACKET

595454
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

595442
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH ASP DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH ASP DASH TRNAS LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
is: C02984
boundary condition: false
in compartment: 570138
is: asptrna
is: CHARGED-ASP-TRNAS
initial amount: NaN
name: charged aspartate trna

595418
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R TRANS DASH RXN DASH PI
type: Reaction
product: 604788
product: 604800
is: TRANS-RXN-114
reversible: false
reactant: 604764
name: transport of phosphate [extraorganism;cytosol](secondary symport)
fast: false
notes: GENE_ASSOCIATION: ACIAD3641
reactant: 604776
is: PIt2rpp

604788
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

604800
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

604764
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET E RBRACKET

M PI LBRACKET E RBRACKET
type: Species
is: pi
is: C00009
name: phosphate
in compartment: 570126
is: Pi
constant: false
boundary condition: false
initial amount: NaN
has only substance units: false
initial concentration: NaN

604776
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R TRANS DASH RXN DASH C18 COLON 1 LPAREN C9 RPAREN
type: Reaction
reactant: 610004
name: transport of cis-octadec-9-enoate [extraorganism;cytosol](secondary symport)
product: 610016
reversible: true
product: 610028
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
is: TRANS-RXNIM-5726
fast: false
reactant: 609992

610004
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

610016
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

610028
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

609992
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET E RBRACKET

607640
type: Reaction
reactant: 607652
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of malonate

607652
type: SpeciesReference
stoichiometry: 1.0
species: M MALONATE LBRACKET E RBRACKET

R ACETYL DASH COA DASH CARBOXYLTRANSFER DASH RXN
type: Reaction
is: ACCOAC
is: ACETYL-COA-CARBOXYLTRANSFER-A-RXN
product: 597537
fast: false
product: 597549
product: 597561
name: acetyl-coa carboxylase
is: BIOTIN-CARBOXYL-RXN
reactant: 597489
is: BIOTINLIG-RXN
reactant: 597525
reactant: 597513
reactant: 597501
notes: GENE_ASSOCIATION: ( ACIAD3035 and ACIAD0643 ) and ACIAD0841 and ACIAD1736 and ACIAD1737
reversible: true

597537
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

597549
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH COA LBRACKET C RBRACKET

M MALONYL DASH COA LBRACKET C RBRACKET
type: Species
is: malcoa
constant: false
is: MALONYL-COA
boundary condition: false
is: C00083
initial amount: NaN
initial concentration: NaN
has only substance units: false
in compartment: 570138
name: malonyl-coa

597561
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

597489
type: SpeciesReference
stoichiometry: 1.0
species: M HCO3 LBRACKET C RBRACKET

597525
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

597513
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

597501
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R 4 DASH HYDROXYBENZOATE DASH 3 DASH MONOOXYGENASE DASH RXN
type: Reaction
reactant: 611785
fast: false
product: 611809
is: 4-HYDROXYBENZOATE-3-MONOOXYGENASE-RXN
name: 4-hydroxybenzoate 3-monooxygenase
reactant: 611797
reactant: 611773
reversible: false
product: 611821
notes: GENE_ASSOCIATION: ACIAD1719
product: 611833

611785
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

611809
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

611797
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET

M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: Species
is: C00156
in compartment: 570138
initial concentration: NaN
initial amount: NaN
boundary condition: false
has only substance units: false
constant: false
is: 4-hydroxybenzoate
name: p-hydroxybenzoate
is: 4hbz

611773
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

611821
type: SpeciesReference
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET

611833
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R C14 COLON 1 LPAREN C5 RPAREN DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 617886
product: 617899
reversible: false
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
reactant: 617874
product: 617911
fast: false
is: ACYLCOADEHYDROG-RXN
name: acyl-coa dehydrogenase (c14:1(c5))

617886
type: SpeciesReference
stoichiometry: 1.0
species: 570607

617899
type: SpeciesReference
stoichiometry: 1.0
species: 570763

617874
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

617911
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

R DXPREDISOM DASH RXN
type: Reaction
product: 611749
is: DXPRIi
reactant: 611725
fast: false
is: DXPREDISOM-RXN
product: 611761
reactant: 611737
notes: GENE_ASSOCIATION: ACIAD1376
reversible: true
name: 1-deoxy-d-xylulose reductoisomerase

611749
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET

611725
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

611761
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

611737
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH C DASH METHYL DASH D DASH ERYTHRITOL DASH 4 DASH PHOSPHATE LBRACKET C RBRACKET

R 3 DASH DEHYDROQUINATE DASH DEHYDRATASE DASH CATABOLIC DASH RXN
type: Reaction
product: 577515
product: 577503
reactant: 577491
notes: GENE_ASSOCIATION: ACIAD1713
is: 3-DEHYDROQUINATE-DEHYDRATASE-RXN
fast: false
reversible: true
name: 3-dehydroquinate dehydratase

577515
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET

577503
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET

577491
type: SpeciesReference
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET P RBRACKET

M DEHYDROQUINATE LBRACKET P RBRACKET
type: Species
is: 3dhq
name: 3-dehydroquinate
is: DEHYDROQUINATE
initial amount: NaN
initial concentration: NaN
boundary condition: false
is: C00944
constant: false
in compartment: 570114
has only substance units: false

M ACETYL DASH ACP LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
initial concentration: NaN
is: ACETYL-ACP
constant: false
initial amount: NaN
has only substance units: false
name: acetyl-acp
is: acACP

R TRANS DASH RXNIM DASH 5733
type: Reaction
product: 591500
reactant: 591488
notes: GENE_ASSOCIATION: ACIAD0118 or ACIAD2662
is: TRANS-RXNIM-5733
fast: false
reversible: false
name: transport of d-alanine [extraorganism;cytosol](passive)

591500
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET C RBRACKET

M D DASH ALANINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: D-ALANINE
is: ala-D
name: d-alanine
has only substance units: false
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
is: C00133

591488
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET E RBRACKET

M C18 COLON 0 LBRACKET E RBRACKET
type: Species
is: STEARIC ACID
initial amount: NaN
is: ocdca
is: C01530
constant: false
has only substance units: false
name: octadenoate
initial concentration: NaN
boundary condition: false
in compartment: 570126

570511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: BETAINE_ALDEHYDE

R PREPHENATE DASH TRANSAMINE DASH RXN
type: Reaction
reactant: 601402
product: 601439
reversible: true
name: l-arogenate aminotransferase
is: PREPHENATE-TRANSAMINE-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0112
reactant: 601414
product: 601427

601402
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

601439
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 659 LBRACKET C RBRACKET

M CPD DASH 659 LBRACKET C RBRACKET
type: Species
is: CPD-659
constant: false
boundary condition: false
initial amount: NaN
is: C00826
has only substance units: false
in compartment: 570138
name: l-arogenate
initial concentration: NaN

601414
type: SpeciesReference
stoichiometry: 1.0
species: M PREPHENATE LBRACKET C RBRACKET

M PREPHENATE LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
boundary condition: false
is: PREPHENATE
is: C00254
initial concentration: NaN
has only substance units: false
is: pphn
name: prephenate
initial amount: NaN

601427
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

M CPD DASH 1302 LBRACKET C RBRACKET
type: Species
boundary condition: false
is: CPD-1302
name: 5-methyltetrahydropteroyltri-l-glutamate
initial concentration: NaN
initial amount: NaN
in compartment: 570138
has only substance units: false
is: mhpglu
is: C04489
constant: false

M DEOXYADENOSINE LBRACKET E RBRACKET
type: Species
is: DEOXYADENOSINE
initial amount: NaN
in compartment: 570126
is: dad-2
name: deoxyadenosine
boundary condition: false
is: C00559
has only substance units: false
constant: false
initial concentration: NaN

R C10 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 613446
product: 613458
name: acyl-coa dehydrogenase (c10:0)
reactant: 613422
is: ACYLCOADEHYDROG-RXN
reactant: 613434
is: ACOAD4f
fast: false
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
reversible: false

613446
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

613458
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

613422
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

613434
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET

M CPD DASH 561 LBRACKET C RBRACKET
type: Species
in compartment: 570138
has only substance units: false
name: s-d-ribosyl-l-homocysteine
is: rhcys
is: C03539
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false
is: CPD-561

M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: MESO-DIAMINOPIMELATE
in compartment: 570138
is: C00680
initial concentration: NaN
name: meso-diaminopimelate
constant: false
initial amount: NaN
is: 26dap-M

M METHYLENE DASH THF LBRACKET C RBRACKET
type: Species
is: C00143
initial concentration: NaN
constant: false
has only substance units: false
in compartment: 570138
is: METHYLENE-THF
is: mlthf
name: 5,10-methylene-thf
initial amount: NaN
boundary condition: false

R GPH DASH RXN
type: Reaction
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD0043 or ACIAD0296 or ACIAD0443
is: PGLYCP
is: GPH-RXN
reactant: 603308
product: 603320
product: 603332
name: phosphoglycolate phosphatase
reactant: 603296

603308
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

603320
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

603332
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET

603296
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 67 LBRACKET C RBRACKET

M CPD DASH 67 LBRACKET C RBRACKET
type: Species
is: C00988
is: CPD-67
initial amount: NaN
name: 2-phosphoglycolate
boundary condition: false
has only substance units: false
initial concentration: NaN
constant: false
is: 2pglyc
in compartment: 570138

M CPDIM DASH 6115 LBRACKET C RBRACKET
type: Species
is: CPDIM-6115
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-hydroxybenzylacetate

M SO3 LBRACKET E RBRACKET
type: Species
has only substance units: false
in compartment: 570126
name: so3-2
constant: false
initial concentration: NaN
initial amount: NaN
boundary condition: false
is: C00094
is: so3
is: SO3

M ACETOACETYL DASH S DASH ACP LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
name: acetoacetyl-acp
initial concentration: NaN
is: ACETOACETYL-S-ACP
is: C05744
boundary condition: false
in compartment: 570138
constant: false
is: actACP

M C12 COLON 1 LPAREN C3 RPAREN DASH COA LBRACKET C RBRACKET
type: Species
is: C02944
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-dodec-3-enoyl-coa

M DTDP DASH RHAMNOSE LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
is: C03319
has only substance units: false
name: dtdp-rhamnose
is: DTDP-RHAMNOSE
in compartment: 570138
constant: false
is: dtdprmn
boundary condition: false

R RXNIM DASH 6205
type: Reaction
is: RXNIM-6205
fast: false
product: 576189
notes: GENE_ASSOCIATION: ACIAD1428
reversible: false
reactant: 576153
name: benzylacetate esterase
reactant: 576165
product: 576177

576189
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

576153
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET C RBRACKET

576165
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

576177
type: SpeciesReference
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET C RBRACKET

M BENZYL DASH ALCOHOL LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: benzyl alcohol
constant: false
is: C00556
has only substance units: false
initial concentration: NaN
is: BENZYL-ALCOHOL
boundary condition: false
initial amount: NaN

M CPD DASH 377 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: CPD-377
has only substance units: false
is: 2dhglcn
boundary condition: false
constant: false
name: 2-dehydro-d-gluconate
in compartment: 570138
initial amount: NaN
is: C00629

M CH3 DASH MALONATE DASH S DASH ALD LBRACKET C RBRACKET
type: Species
name: methylmalonate-semialdehyde
constant: false
initial amount: NaN
is: CH3-MALONATE-S-ALD
in compartment: 570138
boundary condition: false
is: 2mop
is: C00349
initial concentration: NaN
has only substance units: false

R METHYLENETHFREDUCT DASH RXN
type: Reaction
reversible: true
name: 5,10-methylenetetrahydrofolate reductase (fadh)
is: MTHFR2
is: METHYLENETHFREDUCT-RXN
reactant: 574144
fast: false
notes: GENE_ASSOCIATION: ACIAD2283
product: 574168
product: 574156
reactant: 574132

574144
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH METHYL DASH THF LBRACKET C RBRACKET

M 5 DASH METHYL DASH THF LBRACKET C RBRACKET
type: Species
is: 5-METHYL-THF
is: C00440
has only substance units: false
in compartment: 570138
constant: false
name: 5-methyl-thf
boundary condition: false
initial concentration: NaN
is: 5mthf
initial amount: NaN

574168
type: SpeciesReference
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET

574156
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

574132
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5720
type: Reaction
product: 615656
reactant: 615644
notes: GENE_ASSOCIATION: ACIAD2958 or ACIAD0245 or ACIAD2534
is: TRANS-RXN0-206
is: NH4tpp
fast: false
reversible: true
name: transport of nh4+ [extraorganism;cytosol](passive)

615656
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

615644
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET E RBRACKET

M AMMONIUM LBRACKET E RBRACKET
type: Species
boundary condition: false
initial amount: NaN
in compartment: 570126
is: AMMONIUM
name: nh4+
has only substance units: false
is: nh4
is: C01342
initial concentration: NaN
constant: false

R OROTPDECARB DASH RXN
type: Reaction
reversible: false
product: 604343
name: orotidine-5'-phosphate decarboxylase
fast: false
product: 604355
is: OMPDC
notes: GENE_ASSOCIATION: ACIAD2341
is: OROTPDECARB-RXN
reactant: 604331

604343
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

604355
type: SpeciesReference
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET

604331
type: SpeciesReference
stoichiometry: 1.0
species: M OROTIDINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

614996
type: Reaction
reactant: 615020
product: 615056
reactant: 615008
product: 615044
notes: GENE_ASSOCIATION: ACIAD3383
name: fatty acyl-coa reductase (c16:1(c7))
product: 615032
fast: false
reversible: true

615020
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

615056
type: SpeciesReference
stoichiometry: 1.0
species: 570980

570980
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enal

615008
type: SpeciesReference
stoichiometry: 1.0
species: 570294

570294
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enoyl-coa

615044
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

615032
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R PHENYLALANINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 604524
is: PHETRS
notes: GENE_ASSOCIATION: ACIAD3041 and ACIAD3042
is: PHENYLALANINE--TRNA-LIGASE-RXN
reactant: 604512
reactant: 604500
product: 604548
fast: false
name: phenylalanine--trna ligase
reactant: 604488
reversible: false
product: 604536

604524
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

604512
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

604500
type: SpeciesReference
stoichiometry: 1.0
species: M PHE DASH TRNAS LBRACKET C RBRACKET

M PHE DASH TRNAS LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: C01648
name: phenylalanine trna
in compartment: 570138
boundary condition: false
constant: false
is: trnaphe
initial amount: NaN
is: PHE-TRNAS
has only substance units: false

604548
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

604488
type: SpeciesReference
stoichiometry: 1.0
species: M PHE LBRACKET C RBRACKET

604536
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH PHE DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH PHE DASH TRNAS LBRACKET C RBRACKET
type: Species
is: C03511
in compartment: 570138
has only substance units: false
boundary condition: false
is: phetrna
initial amount: NaN
name: charged phenylalanine trna
is: CHARGED-PHE-TRNAS
initial concentration: NaN
constant: false

R UPPSYN DASH RXN
type: Reaction
is: UPPSYN-RXN
reactant: 602455
reversible: false
fast: false
is: UDCPDPS
notes: GENE_ASSOCIATION: ACIAD1374
product: 602479
product: 602491
name: undecaprenyl pyrophosphate synthetase
reactant: 602467

602455
type: SpeciesReference
stoichiometry: 1.0
species: M FARNESYL DASH PP LBRACKET C RBRACKET

602479
type: SpeciesReference
stoichiometry: 1.0
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET

602491
type: SpeciesReference
stoichiometry: 8.0
species: M PPI LBRACKET C RBRACKET

602467
type: SpeciesReference
stoichiometry: 8.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET

M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
initial concentration: NaN
is: C00129
initial amount: NaN
name: delta3-isopentenyl-pp
boundary condition: false
is: ipdp
in compartment: 570138
is: delta(3)-isopentenyl-pp

R FABAUNSATDEHYDR DASH RXN
type: Reaction
reversible: false
product: 613338
fast: false
is: 3HAD100
product: 613350
reactant: 613326
notes: GENE_ASSOCIATION: ACIAD1381
is: FABAUNSATDEHYDR-RXN
name: 3hydroxyacyl-acp dehydratase (c10:0)

613338
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

613350
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

613326
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

M GLYCEROL LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: glycerol
is: C00116
boundary condition: false
is: GLYCEROL
in compartment: 570138
has only substance units: false
constant: false
is: glyc

R GSAAMINOTRANS DASH RXN
type: Reaction
product: 575058
reactant: 575046
notes: GENE_ASSOCIATION: ACIAD1201
is: GSAAMINOTRANS-RXN
is: G1SAT
fast: false
reversible: true
name: glutamate-1-semialdehyde 2,1-aminomutase

575058
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH AMINO DASH LEVULINATE LBRACKET C RBRACKET

M 5 DASH AMINO DASH LEVULINATE LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
has only substance units: false
initial amount: NaN
initial concentration: NaN
constant: false
is: C00430
is: 5aop
is: 5-AMINO-LEVULINATE
name: 5-amino-levulinate

575046
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTAMATE DASH 1 DASH SEMIALDEHYDE LBRACKET C RBRACKET

M DEOXYINOSINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
name: deoxyinosine
boundary condition: false
is: din
in compartment: 570138
has only substance units: false
constant: false
is: C05512
is: DEOXYINOSINE
initial amount: NaN

R DCYSDESULF DASH RXN
type: Reaction
reactant: 593849
is: DCYSDESULF-RXN
product: 593874
reversible: false
product: 593886
product: 593898
notes: GENE_ASSOCIATION: ACIAD0753
reactant: 593862
fast: false
name: d-cysteine desulfhydrase
is: CYSDDS

593849
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH CYSTEINE LBRACKET C RBRACKET

593874
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

593886
type: SpeciesReference
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET

M HS LBRACKET C RBRACKET
type: Species
is: h2s
has only substance units: false
initial amount: NaN
name: h2s
constant: false
boundary condition: false
is: C00283
initial concentration: NaN
is: HS
in compartment: 570138

593898
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

593862
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R C6 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
fast: false
is: EAR60x
reactant: 585665
reactant: 585677
name: 2enoyl-acp reductase (c6:0)
notes: GENE_ASSOCIATION: ACIAD3116
is: ENOYL-ACP-REDUCT-NADH-RXN
product: 585689
reversible: false
product: 585701

585665
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

M C6 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
initial amount: NaN
initial concentration: NaN
in compartment: 570138
is: thex2eACP
name: trans-hex-2-enoyl-acp
constant: false
is: C05748

585677
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

585689
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH ACP LBRACKET C RBRACKET

M C6 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
constant: false
name: hexanoyl-acp
initial concentration: NaN
is: C05749
is: hexACP
in compartment: 570138
has only substance units: false
initial amount: NaN
boundary condition: false

585701
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R ALKANE DASH 1 DASH MONOOXYGENASE DASH RXN
type: Reaction
name: octane-1 monooxygenase
is: ALKANE-1-MONOOXYGENASE-RXN
fast: false
reactant: 592450
reactant: 592438
notes: GENE_ASSOCIATION: ACIAD1411 and ACIAD1065
is: |RUBREDOXIN--NAD(+)-REDUCTASE-RXN|
product: 592475
reversible: false
product: 592487
reactant: 592426
product: 592463

592450
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

592438
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET C RBRACKET

M CPD DASH 148 LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
name: octane
constant: false
in compartment: 570138
initial amount: NaN
is: C01387
is: CPD-148
has only substance units: false

592475
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

592487
type: SpeciesReference
stoichiometry: 1.0
species: M OCTANOL LBRACKET C RBRACKET

592426
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

592463
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

M APS LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
name: aps
initial concentration: NaN
is: aps
is: C00224
in compartment: 570138
is: APS
boundary condition: false
has only substance units: false

R GAPOXNPHOSPHN DASH RXN
type: Reaction
name: glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)
fast: false
reactant: 602178
reversible: true
product: 602214
is: GAPD
reactant: 602166
notes: GENE_ASSOCIATION: ACIAD2565
is: GAPOXNPHOSPHN-RXN
product: 602202
reactant: 602190

602178
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

602214
type: SpeciesReference
stoichiometry: 1.0
species: M DPG LBRACKET C RBRACKET

M DPG LBRACKET C RBRACKET
type: Species
is: DPG
initial amount: NaN
name: 3-phospho-d-glyceroyl-phosphate
constant: false
in compartment: 570138
initial concentration: NaN
is: 13dpg
is: C00236
boundary condition: false
has only substance units: false

602166
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

602202
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

602190
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

587865
type: Reaction
product: 587889
reactant: 587877
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of benzylacetate [extraorganism;cytosol](passive)

587889
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET C RBRACKET

587877
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 6501 LBRACKET E RBRACKET

M CPD DASH 6501 LBRACKET E RBRACKET
type: Species
initial concentration: NaN
is: C15513
in compartment: 570126
constant: false
initial amount: NaN
name: benzylacetate
is: CPD-6501
has only substance units: false
boundary condition: false

R GLUCONOKIN DASH RXN
type: Reaction
reactant: 587252
product: 587264
is: GLUCONOKIN-RXN
name: gluconokinase
reversible: true
reactant: 587241
product: 587276
is: GNK
notes: GENE_ASSOCIATION: ACIAD0545
fast: false

587252
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

587264
type: SpeciesReference
stoichiometry: 1.0
species: M 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET

587241
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET

587276
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R ISOLEUCINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reversible: false
is: ISOLEUCINE--TRNA-LIGASE-RXN
reactant: 605090
notes: GENE_ASSOCIATION: ACIAD0022
name: isoleucine--trna ligase
reactant: 605066
product: 605126
product: 605102
fast: false
reactant: 605078
product: 605114
is: ILETRS

605090
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

605066
type: SpeciesReference
stoichiometry: 1.0
species: M ILE DASH TRNAS LBRACKET C RBRACKET

M ILE DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
name: isoleucine trna
constant: false
is: trnaile
initial amount: NaN
is: C01644
initial concentration: NaN
in compartment: 570138
is: ILE-TRNAS
has only substance units: false

605126
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

605102
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH ILE DASH TRNAS LBRACKET C RBRACKET

605078
type: SpeciesReference
stoichiometry: 1.0
species: M ILE LBRACKET C RBRACKET

605114
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R OPPSYN DASH RXN
type: Reaction
reversible: false
name: octaprenyl pyrophosphate synthase
product: 610642
is: OPPSYN-RXN
notes: GENE_ASSOCIATION: ACIAD2940
product: 610630
reactant: 610605
fast: false
reactant: 610618
is: OCTDPS

610642
type: SpeciesReference
stoichiometry: 5.0
species: M PPI LBRACKET C RBRACKET

610630
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET

M OCTAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: octdp
initial amount: NaN
name: octaprenyl diphosphate
is: C04146
has only substance units: false
constant: false
boundary condition: false
is: OCTAPRENYL-DIPHOSPHATE
initial concentration: NaN

610605
type: SpeciesReference
stoichiometry: 1.0
species: M FARNESYL DASH PP LBRACKET C RBRACKET

610618
type: SpeciesReference
stoichiometry: 5.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET

584473
type: Reaction
product: 584509
product: 584497
reactant: 584485
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: generic free polysaccharides synthesis

584509
type: SpeciesReference
stoichiometry: 0.8
species: 570931

584497
type: SpeciesReference
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET

584485
type: SpeciesReference
stoichiometry: 1.0
species: 570414

570414
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: UDP-POLYSACCH_LPS

R 1PFRUCTPHOSN DASH RXN
type: Reaction
product: 609497
is: FRUK
fast: false
reversible: false
is: 1PFRUCTPHOSN-RXN
reactant: 609473
product: 609485
name: 1-phosphofructokinase
notes: GENE_ASSOCIATION: ACIAD1992
reactant: 609461

609497
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

609473
type: SpeciesReference
stoichiometry: 1.0
species: M FRU1P LBRACKET C RBRACKET

609485
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET

M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
initial amount: NaN
has only substance units: false
is: FRUCTOSE-16-DIPHOSPHATE
initial concentration: NaN
boundary condition: false
is: fdp
name: fructose-1,6-bisphosphate
is: C00354

609461
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R TRANS DASH RXN DASH FE PLUS 2
type: Reaction
product: 590284
reactant: 590272
notes: GENE_ASSOCIATION: ACIAD0268 or ACIAD1471 or ACIAD0531
is: TRANS-RXN-8
is: FE2tpp
fast: false
reversible: true
name: transport of fe+2 [extraorganism;cytosol](passive)

590284
type: SpeciesReference
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET

590272
type: SpeciesReference
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET E RBRACKET

M FE PLUS 2 LBRACKET E RBRACKET
type: Species
in compartment: 570126
initial concentration: NaN
has only substance units: false
constant: false
initial amount: NaN
boundary condition: false
is: FE+2
is: C00023
name: fe+2
is: fe2

R GLUCOSAMINE1PACETYL DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3575
name: glucosamine-1-phosphate N-acetyltransferase
product: 586808
reactant: 586783
reversible: false
fast: false
reactant: 586795
is: G1PACT
is: GLUCOSAMINE1PACETYL-RXN
product: 586820

586808
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

586783
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCOSAMINE DASH 1P LBRACKET C RBRACKET

586795
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

586820
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ACETYL DASH D DASH GLUCOSAMINE DASH 1 DASH P LBRACKET C RBRACKET

M N DASH ACETYL DASH D DASH GLUCOSAMINE DASH 1 DASH P LBRACKET C RBRACKET
type: Species
is: N-ACETYL-D-GLUCOSAMINE-1-P
boundary condition: false
has only substance units: false
initial amount: NaN
name: n-acetyl-glucosamine-1-phosphate
initial concentration: NaN
in compartment: 570138
is: acgam1p
constant: false
is: C04256

R TRANS DASH RXNIM DASH 5794
type: Reaction
product: 597933
reactant: 597920
notes: GENE_ASSOCIATION: ACIAD1651
is: TRANS-RXNIM-5794
fast: false
reversible: true
name: transport of 2-oxoglutarate [extraorganism;cytosol](passive)

597933
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

597920
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET E RBRACKET

M 2 DASH KETOGLUTARATE LBRACKET E RBRACKET
type: Species
has only substance units: false
name: 2-oxoglutarate
is: akg
boundary condition: false
is: C00026
in compartment: 570126
initial amount: NaN
is: 2-KETOGLUTARATE
constant: false
initial concentration: NaN

M SULFATE LBRACKET E RBRACKET
type: Species
is: C00059
in compartment: 570126
initial amount: NaN
name: so42-
is: SULFATE
initial concentration: NaN
constant: false
boundary condition: false
is: so4
has only substance units: false

R IGPSYN DASH RXN
type: Reaction
product: 596803
notes: GENE_ASSOCIATION: ACIAD2463
name: indole-3-glycerol-phosphate synthase
fast: false
is: IGPS
product: 596791
reversible: false
reactant: 596767
is: IGPSYN-RXN
product: 596779

596803
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596791
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

596767
type: SpeciesReference
stoichiometry: 1.0
species: M CARBOXYPHENYLAMINO DASH DEOXYRIBULOSE DASH P LBRACKET C RBRACKET

596779
type: SpeciesReference
stoichiometry: 1.0
species: M INDOLE DASH 3 DASH GLYCEROL DASH P LBRACKET C RBRACKET

M INDOLE DASH 3 DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: Species
is: 3ig3p
name: indole-3-glycerol-phosphate
has only substance units: false
constant: false
is: C03506
in compartment: 570138
boundary condition: false
initial concentration: NaN
is: INDOLE-3-GLYCEROL-P
initial amount: NaN

R TRANS DASH RXN DASH 122
type: Reaction
name: transport of l-glutamate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD0804
product: 599886
is: TRANS-RXN-122
fast: false
is: GLUt4pp
product: 599874
reactant: 599850
reversible: false
reactant: 599862

599886
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET

M NA PLUS LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: na+
initial amount: NaN
is: na1
constant: false
has only substance units: false
initial concentration: NaN
boundary condition: false
is: NA+
is: C01330

599874
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

599850
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET

599862
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET

R C16 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
fast: false
is: ENOYL-COA-HYDRAT-RXN
name: enoyl-coa hydratase (c16:0)
reactant: 587469
reversible: false
is: ECOAH7
reactant: 587481
product: 587493

587469
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C16 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: trans-hexadec-2-enoyl-coa
is: hdd2coa
initial concentration: NaN
boundary condition: false
has only substance units: false
initial amount: NaN
constant: false
is: C05272

587481
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

587493
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

M C16 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
name: 3-hydroxyhexadecanoyl-coa
initial amount: NaN
initial concentration: NaN
constant: false
is: C05258
is: 3hhdcoa
has only substance units: false
boundary condition: false
in compartment: 570138

R C14 COLON 1 LPAREN C5 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
reactant: 601586
notes: GENE_ASSOCIATION: ACIAD3116
fast: false
is: ENOYL-ACP-REDUCT-NADH-RXN
product: 601622
reversible: false
reactant: 601598
product: 601610
name: 2enoyl-acp reductase (c14:1(c5))

601586
type: SpeciesReference
stoichiometry: 1.0
species: 570390

570390
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-tetradec-2,4-enoyl-acp

601622
type: SpeciesReference
stoichiometry: 1.0
species: 570667

601598
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

601610
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

M CPD DASH 188 LBRACKET C RBRACKET
type: Species
has only substance units: false
in compartment: 570138
boundary condition: false
name: undecaprenol
constant: false
is: CPD-188
initial concentration: NaN
is: C01968
is: udcp
initial amount: NaN

R TRANS DASH RXNIM DASH 5771
type: Reaction
reactant: 585713
product: 585749
product: 585761
reactant: 585725
notes: GENE_ASSOCIATION: ACIAD1914 and ACIAD1463 and ACIAD1465 and ACIAD1464
product: 585773
is: TRANS-RXNIM-5771
reversible: false
reactant: 585737
fast: false
name: transport of no3- [extraorganism;cytosol](primary active atp)

585713
type: SpeciesReference
stoichiometry: 1.0
species: M NITRATE LBRACKET E RBRACKET

585749
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

585761
type: SpeciesReference
stoichiometry: 1.0
species: M NITRATE LBRACKET C RBRACKET

585725
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

585773
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

585737
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

M DEOXYINOSINE LBRACKET E RBRACKET
type: Species
in compartment: 570126
name: deoxyinosine
is: DEOXYINOSINE
is: din
constant: false
is: C05512
initial amount: NaN
boundary condition: false
has only substance units: false
initial concentration: NaN

R C18 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
product: 606954
name: 3hydroxyacyl-acp dehydratase (c18:0)
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
is: 3HAD180
fast: false
product: 606966
notes: GENE_ASSOCIATION: ACIAD1381
reactant: 606942
reversible: false

606954
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

M C18 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
is: toctd2eACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-octadec-2-enoyl-acp

606966
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

606942
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

R RXN0 DASH 280
type: Reaction
product: 597440
is: RXN0-280
product: 597416
product: 597453
product: 597428
fast: false
reactant: 597380
reactant: 597404
name: ethane sulfonate monooxygenase
notes: GENE_ASSOCIATION: ACIAD0036 or ACIAD1505 or ACIAD1518 or ACIAD1527 or ACIAD1535 or ACIAD3471
reactant: 597392
reversible: false

597440
type: SpeciesReference
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET

597416
type: SpeciesReference
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET

597453
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

597428
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET

597380
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

597404
type: SpeciesReference
stoichiometry: 1.0
species: 570270

597392
type: SpeciesReference
stoichiometry: 1.0
species: M FMNH2 LBRACKET C RBRACKET

R PROPIONATE DASH DASH COA DASH LIGASE DASH RXN
type: Reaction
product: 586880
reactant: 586844
reversible: false
notes: GENE_ASSOCIATION: ACIAD3475
reactant: 586856
is: PROPIONATE--COA-LIGASE-RXN
reactant: 586832
product: 586891
product: 586868
fast: false
is: ACCOAL
name: propionate--coa ligase

586880
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

586844
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

586856
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

586832
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET

586891
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET

M PROPIONYL DASH COA LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
constant: false
name: propionyl-coa
has only substance units: false
is: ppcoa
initial concentration: NaN
in compartment: 570138
is: PROPIONYL-COA
is: C00100

586868
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

577611
type: Reaction
reactant: 577623
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of uracil

577623
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET E RBRACKET

M TMP LBRACKET C RBRACKET
type: Species
is: C00364
name: dtmp
boundary condition: false
in compartment: 570138
initial amount: NaN
is: TMP
is: dtmp
initial concentration: NaN
has only substance units: false
constant: false

R C14 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
fast: false
is: 3-OXOACYL-ACP-REDUCT-RXN
reactant: 583960
name: 3oxoacyl-acp reductase (c14:0)
reactant: 583973
product: 583999
is: 3OAR140
product: 583986
notes: GENE_ASSOCIATION: ACIAD0871
reversible: false

583960
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

583973
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

583999
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET

M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: C04688
name: 3-hydroxytetradecanoyl-acp
is: 3-OHMYRISTOYL-ACP
is: 3hmrsACP
has only substance units: false
boundary condition: false
initial concentration: NaN
in compartment: 570138
constant: false

583986
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R CHORISMATEMUT DASH RXN
type: Reaction
product: 577647
reactant: 577635
notes: GENE_ASSOCIATION: ACIAD2223
is: CHORISMATEMUT-RXN
is: CHORM
fast: false
reversible: true
name: chorismate mutase

577647
type: SpeciesReference
stoichiometry: 1.0
species: M PREPHENATE LBRACKET C RBRACKET

577635
type: SpeciesReference
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET

618248
type: Reaction
reactant: 618260
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxycytidine

618260
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET E RBRACKET

M CARBON DASH DIOXIDE LBRACKET E RBRACKET
type: Species
has only substance units: false
boundary condition: false
is: C00011
in compartment: 570126
constant: false
is: CARBON-DIOXIDE
initial amount: NaN
is: co2
name: co2
initial concentration: NaN

R GLUTARATE DASH DASH COA DASH LIGASE DASH RXN
type: Reaction
product: 586723
product: 586735
reactant: 586699
product: 586747
fast: false
is: GLUTARATE--COA-LIGASE-RXN
name: glutarate--coa ligase
reversible: false
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696
reactant: 586711
reactant: 586687

586723
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

586735
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET

M GLUTARYL DASH COA LBRACKET C RBRACKET
type: Species
is: C00527
in compartment: 570138
boundary condition: false
is: GLUTARYL-COA
initial amount: NaN
constant: false
name: glutaryl-coa
has only substance units: false
initial concentration: NaN
is: glutcoa

586699
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

586747
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

586711
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

586687
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARATE LBRACKET C RBRACKET

570535
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-COA_WAX

M ADENINE LBRACKET C RBRACKET
type: Species
name: adenine
is: ade
constant: false
boundary condition: false
initial amount: NaN
initial concentration: NaN
is: C00147
in compartment: 570138
is: ADENINE
has only substance units: false

R ALKANAL DASH MONOOXYGENASE DASH LPAREN FMN DASH LINKED RPAREN DASH RXN
type: Reaction
reactant: 572230
reversible: false
fast: false
name: octanal monooxygenase (fmn-linked)
product: 572279
product: 572267
reactant: 572243
product: 572291
notes: GENE_ASSOCIATION: ACIAD1830
reactant: 572255
is: |ALKANAL-MONOOXYGENASE-(FMN-LINKED)-RXN|

572230
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

572279
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET

572267
type: SpeciesReference
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET

572243
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 371 LBRACKET C RBRACKET

572291
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

572255
type: SpeciesReference
stoichiometry: 1.0
species: M FMNH2 LBRACKET C RBRACKET

R HOMOCYSMET DASH RXN
type: Reaction
product: 605547
is: METS
name: 5-methyltetrahydropteroyltriglutamate--homocysteine s-methyltransferase
product: 605559
reversible: false
reactant: 605535
notes: GENE_ASSOCIATION: ACIAD3523
is: HOMOCYSMET-RXN
fast: false
reactant: 605523

605547
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET

605559
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1301 LBRACKET C RBRACKET

M CPD DASH 1301 LBRACKET C RBRACKET
type: Species
boundary condition: false
is: CPD-1301
initial concentration: NaN
name: tetrahydropteroyltri-l-glutamate
constant: false
in compartment: 570138
initial amount: NaN
is: C04144
is: hpglu
has only substance units: false

605535
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET

605523
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1302 LBRACKET C RBRACKET

M KDO LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
is: kdo
is: KDO
is: C01187
name: 3-deoxy-d-manno-octulosonate
in compartment: 570138
initial amount: NaN
has only substance units: false
initial concentration: NaN

R TRANS DASH RXNIM DASH 5839 DASH BIS
type: Reaction
reversible: false
product: 610557
is: ARGt3pp
notes: GENE_ASSOCIATION: ACIAD0966
reactant: 610533
product: 610569
fast: false
is: TRANS-RXNIM-5839
name: transport of l-arginine [cytosol;extraorganism](secondary antiport)
reactant: 610545

610557
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

610533
type: SpeciesReference
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET

610569
type: SpeciesReference
stoichiometry: 1.0
species: M ARG LBRACKET E RBRACKET

M ARG LBRACKET E RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
initial amount: NaN
constant: false
is: ARG
is: C00062
is: arg-L
name: l-arginine
in compartment: 570126
boundary condition: false

610545
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R TRANS DASH RXN DASH DEOXYADENOSINE
type: Reaction
reactant: 579729
is: DADNt2pp
product: 579753
name: transport of deoxyadenosine [extraorganism;cytosol](secondary symport)
product: 579741
notes: GENE_ASSOCIATION: ACIAD2389
is: TRANS-RXN-108C
reversible: false
reactant: 579717
fast: false

579729
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

579753
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET C RBRACKET

M DEOXYADENOSINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: dad-2
is: DEOXYADENOSINE
name: deoxyadenosine
initial amount: NaN
is: C00559
constant: false
has only substance units: false
in compartment: 570138
boundary condition: false

579741
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

579717
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET E RBRACKET

R ACETOOHBUTSYN DASH RXN
type: Reaction
reactant: 602804
fast: false
is: ACETOOHBUTSYN-RXN
product: 602816
product: 602828
name: acetolactate synthase
notes: GENE_ASSOCIATION: ( ACIAD0999 or ACIAD3104 ) and ACIAD3103
reversible: false
is: ACHBS
reactant: 602792

602804
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

602816
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH ACETO DASH 2 DASH HYDROXY DASH BUTYRATE LBRACKET C RBRACKET

602828
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

602792
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH OXOBUTANOATE LBRACKET C RBRACKET

R URIDINE DASH NUCLEOSIDASE DASH RXN
type: Reaction
fast: false
is: URIDINE-NUCLEOSIDASE-RXN
reactant: 587589
product: 587613
notes: GENE_ASSOCIATION: ACIAD2386
name: uridine nucleosidase
reactant: 587578
reversible: false
product: 587601
is: URIH

587589
type: SpeciesReference
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET

587613
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET

587578
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

587601
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET

R GUANINE DASH DEAMINASE DASH RXN
type: Reaction
product: 592524
notes: GENE_ASSOCIATION: ACIAD3668
is: GUAD
is: GUANINE-DEAMINASE-RXN
reversible: false
name: guanine deaminase
reactant: 592511
fast: false
product: 592536
reactant: 592499

592524
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

592511
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

592536
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET

592499
type: SpeciesReference
stoichiometry: 1.0
species: M GUANINE LBRACKET C RBRACKET

M GUANINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial amount: NaN
initial concentration: NaN
constant: false
name: guanine
is: C00242
is: GUANINE
boundary condition: false
has only substance units: false
is: gua

R C8 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
reversible: false
name: hydroxyacyl-coa dehydrogenase (c8:0)
is: OHACYL-COA-DEHYDROG-RXN
is: HACD3i
reactant: 609655
product: 609679
reactant: 609667
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
product: 609691
fast: false

609655
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

609679
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

609667
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

609691
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R C6 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
is: 3HAD60
notes: GENE_ASSOCIATION: ACIAD1381
reactant: 616619
name: 3hydroxyacyl-acp dehydratase (c6:0)
product: 616631
product: 616644
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
reversible: false
fast: false

616619
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

616631
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

616644
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R URACIL DASH PRIBOSYLTRANS DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0744
reactant: 578910
fast: false
is: URACIL-PRIBOSYLTRANS-RXN
product: 578946
is: UPPRT
name: uracil phosphoribosyltransferase
reversible: false
reactant: 578922
product: 578934

578910
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

578946
type: SpeciesReference
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET

578922
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET

578934
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R HISTALDEHYD DASH RXN
type: Reaction
reactant: 599093
is: HISTALDEHYD-RXN
product: 599105
is: HISTD
reactant: 599081
reactant: 599069
reversible: false
product: 599117
fast: false
notes: GENE_ASSOCIATION: ACIAD0663
name: histidinol dehydrogenase

599093
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

599105
type: SpeciesReference
stoichiometry: 1.0
species: M HIS LBRACKET C RBRACKET

599081
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

599069
type: SpeciesReference
stoichiometry: 1.0
species: M HISTIDINAL LBRACKET C RBRACKET

599117
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R 2 PERIOD 7 PERIOD 7 PERIOD 1 DASH RXN
type: Reaction
reactant: 595961
is: 2.7.7.1-RXN
name: nicotinamide-nucleotide adenylyltransferase
product: 595985
reactant: 595949
notes: GENE_ASSOCIATION: ACIAD2606
is: NMNAT
product: 595973
fast: false
reversible: true

595961
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

595985
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

595949
type: SpeciesReference
stoichiometry: 1.0
species: 570402

595973
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

M CPD DASH 741 LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: C04105
is: CPD-741
initial concentration: NaN
constant: false
initial amount: NaN
in compartment: 570138
name: 2,5-dihydro-5-oxofuran-2-acetate

M KDO DASH 8P LBRACKET C RBRACKET
type: Species
is: kdo8p
in compartment: 570138
initial amount: NaN
is: C04478
boundary condition: false
initial concentration: NaN
is: KDO-8P
name: 3-deoxy-d-manno-octulosonate 8-p
has only substance units: false
constant: false

570919
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: L-PHOSPHATIDATE_PL

M VANILLATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
constant: false
has only substance units: false
boundary condition: false
name: vanillate
in compartment: 570126
is: VANILLATE
is: C06672

570258
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-SN-GLYCEROL-3P_TAG

M ACETOIN LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
boundary condition: false
constant: false
name: acetoin
is: actn-R
is: C00466
in compartment: 570138
is: ACETOIN
has only substance units: false

R RXNIM DASH 6094
type: Reaction
product: 573831
product: 573819
reactant: 573807
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6094
fast: false
reversible: true
name: 3,4-dihydroxyphenyl-beta-hydroxypropionyl-coa lyase

573831
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

573819
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6097 LBRACKET C RBRACKET

M CPDIM DASH 6097 LBRACKET C RBRACKET
type: Species
is: 34dhpac
is: C04043
in compartment: 570138
has only substance units: false
constant: false
name: protocatechualdehyde
initial amount: NaN
initial concentration: NaN
is: CPDIM-6097
boundary condition: false

573807
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6096 LBRACKET C RBRACKET

R XANPRIBOSYLTRAN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3164
product: 598429
reactant: 598405
is: XANPRIBOSYLTRAN-RXN
fast: false
reversible: false
name: xanthine-guanine phosphoribosyltransferase
product: 598417
reactant: 598392
is: XPPT

598429
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

598405
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

598417
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

598392
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET

R 3 DASH OHACYL DASH ACP LPS DASH ASSEMBLY DASH RXN
type: Reaction
product: 609534
reactant: 609521
reactant: 609509
notes: GENE_ASSOCIATION:
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: true
name: generic hydroxyacyl-acp of lps assembly

609534
type: SpeciesReference
stoichiometry: 1.0
species: 570823

609521
type: SpeciesReference
stoichiometry: 0.44
species: M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET

609509
type: SpeciesReference
stoichiometry: 0.56
species: M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET

R 2 DASH ISOPROPYLMALATESYN DASH RXN
type: Reaction
fast: false
reversible: true
is: 2-ISOPROPYLMALATESYN-RXN
reactant: 598465
name: 2-isopropylmalate synthase
product: 598489
reactant: 598453
notes: GENE_ASSOCIATION: ACIAD0530
is: IPPS
reactant: 598441
product: 598477

598465
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

598489
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

598453
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET

598441
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

598477
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH CARBOXY DASH 3 DASH HYDROXY DASH ISOCAPROATE LBRACKET C RBRACKET

R UNDECAPRENOL DASH KINASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0678 or ACIAD0914 or ACIAD1642
reversible: false
reactant: 587625
is: UNDECAPRENOL-KINASE-RXN
product: 587649
name: undecaprenol kinase
reactant: 587637
product: 587661
fast: false

587625
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 188 LBRACKET C RBRACKET

587649
type: SpeciesReference
stoichiometry: 1.0
species: M UNDECAPRENYL DASH P LBRACKET C RBRACKET

587637
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

587661
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R DLACTDEHYDROGFAD DASH RXN
type: Reaction
reactant: 573939
is: DLACTDEHYDROGFAD-RXN
fast: false
product: 573963
reversible: false
reactant: 573951
product: 573975
is: LDH D2
notes: GENE_ASSOCIATION: ACIAD0109
name: d-lactate dehydrogenase, fad

573939
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET

573963
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

573951
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

573975
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

R ALLOPHANATE DASH HYDROLASE DASH RXN
type: Reaction
product: 592572
notes: GENE_ASSOCIATION: ACIAD2518
name: allophanate hydrolase
reactant: 592548
reactant: 592560
reversible: false
fast: false
product: 592584
is: ALPHNH
is: ALLOPHANATE-HYDROLASE-RXN

592572
type: SpeciesReference
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET

592548
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 578 LBRACKET C RBRACKET

M CPD DASH 578 LBRACKET C RBRACKET
type: Species
name: urea-1-carboxylate
is: CPD-578
constant: false
in compartment: 570138
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
is: C01010

592560
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

592584
type: SpeciesReference
stoichiometry: 2.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5847
type: Reaction
reactant: 601634
fast: false
is: TRANS-RXNIM-5847
product: 601670
reactant: 601646
product: 601658
reversible: false
is: ALAt4pp
notes: GENE_ASSOCIATION: ACIAD0805
name: transport of l-alanine [extraorganism;cytosol](secondary symport)

601634
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET E RBRACKET

M L DASH ALPHA DASH ALANINE LBRACKET E RBRACKET
type: Species
has only substance units: false
is: L-ALPHA-ALANINE
is: C00041
constant: false
initial concentration: NaN
in compartment: 570126
initial amount: NaN
is: ala-L
boundary condition: false
name: l-alanine

601670
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET

601646
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET

601658
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET

596117
type: Reaction
reactant: 596129
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glutarate

596129
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARATE LBRACKET E RBRACKET

M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
initial concentration: NaN
is: C00344
name: generic l-1-phosphatidyl-glycerol
boundary condition: false
is: L-1-PHOSPHATIDYL-GLYCEROL
in compartment: 570138
has only substance units: false

M N2 DASH SUCCINYLGLUTAMIC DASH SEMIALDEHYDE LBRACKET C RBRACKET
type: Species
is: N2-SUCCINYLGLUTAMIC-SEMIALDEHYDE
in compartment: 570138
is: sucgsa
initial concentration: NaN
constant: false
initial amount: NaN
boundary condition: false
name: n2-succinylglutamic-semialdehyde
is: C05932
has only substance units: false

R TRANS DASH RXNIM DASH 5901
type: Reaction
name: transport of fructose [extraorganism;cytosol](secondary antiport)
fast: false
notes: GENE_ASSOCIATION: ACIAD1990 and ACIAD1993 and ACIAD3058
reactant: 601984
reactant: 601972
product: 601997
reversible: false
is: FRUptspp
is: TRANS-RXN-158
product: 602009

601984
type: SpeciesReference
stoichiometry: 1.0
species: M FRU LBRACKET E RBRACKET

M FRU LBRACKET E RBRACKET
type: Species
boundary condition: false
has only substance units: false
name: fructose
initial concentration: NaN
is: fru
is: C00095
in compartment: 570126
initial amount: NaN
is: FRU
constant: false

601972
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

601997
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

602009
type: SpeciesReference
stoichiometry: 1.0
species: M FRU1P LBRACKET C RBRACKET

R C16 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
is: EAR160x
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c16:0)
product: 603453
fast: false
reversible: false
is: ENOYL-ACP-REDUCT-NADH-RXN
reactant: 603416
product: 603440
reactant: 603428

603453
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET

603416
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

603440
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

603428
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

M C16 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: tpalm2eACP
constant: false
is: C05763
initial concentration: NaN
has only substance units: false
boundary condition: false
initial amount: NaN
name: trans-hexadec-2-enoyl-acp

http://identifiers.org/biomodels.db/MODEL1949107276#R_C5_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
type: Reaction
product: 608301
reactant: 608289
reactant: 608277
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c5:0)

608301
type: SpeciesReference
stoichiometry: 1.0
species: 571052

571052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-carboxy-3-hydroxybutanoyl-coa

608289
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTACONYL DASH COA LBRACKET C RBRACKET

608277
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M CPD DASH 3571 LBRACKET C RBRACKET
type: Species
is: CPD-3571
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: tricarballylate

M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET
type: Species
is: OLEOYL-COA
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-octadec-9-enoyl-coa

R TRANS DASH RXNIM DASH 5855
type: Reaction
fast: false
name: transport of l-aspartate [extraorganism;cytosol](secondary symport)
reactant: 582110
is: ALAt4pp
product: 582146
product: 582134
reversible: false
reactant: 582122
is: TRANS-RXNIM-5855
notes: GENE_ASSOCIATION: ACIAD0481

582110
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET

582146
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

582134
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

582122
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

607122
type: Reaction
product: 607146
reactant: 607134
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 3,4-dihydroxyphenylpropionate [extraorganism;cytosol](passive)

607146
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6116 LBRACKET C RBRACKET

607134
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6116 LBRACKET E RBRACKET

M CPDIM DASH 6116 LBRACKET E RBRACKET
type: Species
is: CPDIM-6116
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: 3,4-dihydroxyphenylpropionate

R DADPKIN DASH RXN
type: Reaction
reactant: 587685
reversible: true
is: NDPK8
product: 587697
product: 587709
name: dadp kinase
reactant: 587673
is: DADPKIN-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0556

587685
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

587697
type: SpeciesReference
stoichiometry: 1.0
species: M DATP LBRACKET C RBRACKET

M DATP LBRACKET C RBRACKET
type: Species
name: datp
constant: false
initial amount: NaN
is: datp
boundary condition: false
is: C00131
in compartment: 570138
is: DATP
has only substance units: false
initial concentration: NaN

587709
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

587673
type: SpeciesReference
stoichiometry: 1.0
species: M DADP LBRACKET C RBRACKET

M DADP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
boundary condition: false
name: dadp
constant: false
is: DADP
initial amount: NaN
in compartment: 570138
has only substance units: false
is: C00206
is: dadp

M BENZOATE LBRACKET P RBRACKET
type: Species
name: benzoate
is: C00180
initial concentration: NaN
constant: false
initial amount: NaN
has only substance units: false
in compartment: 570114
boundary condition: false
is: BENZOATE
is: bz

R LUMAZINESYN DASH RXN
type: Reaction
reactant: 605138
fast: false
is: LUMAZINESYN-RXN
product: 605186
notes: GENE_ASSOCIATION: ACIAD3571
is: RBFSa
reversible: false
product: 605174
product: 605162
name: lumazine synthase
reactant: 605150

605138
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET

M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: 5-amino-6-ribitylamino-2,4(1h,3h)-pyrimidinedione
has only substance units: false
is: 4r5au
in compartment: 570138
constant: false
boundary condition: false
is: AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE
is: C04732

605186
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

605174
type: SpeciesReference
stoichiometry: 1.0
species: M DIMETHYL DASH D DASH RIBITYL DASH LUMAZINE LBRACKET C RBRACKET

M DIMETHYL DASH D DASH RIBITYL DASH LUMAZINE LBRACKET C RBRACKET
type: Species
is: dmlz
is: C04332
in compartment: 570138
initial concentration: NaN
name: 6,7-dimethyl-8-(1-d-ribityl)lumazine
is: DIMETHYL-D-RIBITYL-LUMAZINE
has only substance units: false
boundary condition: false
initial amount: NaN
constant: false

605162
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

605150
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROXY DASH BUTANONE DASH P LBRACKET C RBRACKET

M PROPIONALDOXIME LBRACKET C RBRACKET
type: Species
is: CPDIM-6123
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: propane aldoxime

M GLUCONATE LBRACKET E RBRACKET
type: Species
name: gluconate
is: glcn
constant: false
is: GLUCONATE
boundary condition: false
in compartment: 570126
is: C00257
initial concentration: NaN
initial amount: NaN
has only substance units: false

R PSERTRANSAM DASH RXN
type: Reaction
product: 575697
reactant: 575685
notes: GENE_ASSOCIATION: ACIAD2647
fast: false
name: phosphoserine aminotransferase
is: PSERT
product: 575709
reversible: true
reactant: 575673
is: PSERTRANSAM-RXN

575697
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

575685
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

575709
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH P DASH SERINE LBRACKET C RBRACKET

M 3 DASH P DASH SERINE LBRACKET C RBRACKET
type: Species
name: 3-phospho-serine
initial concentration: NaN
is: 3-P-SERINE
constant: false
initial amount: NaN
boundary condition: false
in compartment: 570138
has only substance units: false
is: pser-L
is: C01005

575673
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH P DASH HYDROXYPYRUVATE LBRACKET C RBRACKET

M 3 DASH P DASH HYDROXYPYRUVATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: 3-P-HYDROXYPYRUVATE
initial concentration: NaN
has only substance units: false
name: 3-phospho-hydroxypyruvate
is: C03232
initial amount: NaN
constant: false
is: 3php
boundary condition: false

575094
type: Reaction
reactant: 575106
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of so42-

575106
type: SpeciesReference
stoichiometry: 1.0
species: M SULFATE LBRACKET E RBRACKET

M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET
type: Species
is: 4abut
constant: false
is: C00334
initial concentration: NaN
has only substance units: false
in compartment: 570138
boundary condition: false
is: 4-AMINO-BUTYRATE
initial amount: NaN
name: 4-aminobutyrate

R C16 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
is: 3-OXOACYL-ACP-REDUCT-RXN
name: 3oxoacyl-acp reductase (c16:0)
notes: GENE_ASSOCIATION: ACIAD0871
reactant: 599358
fast: false
product: 599382
reversible: false
reactant: 599346
product: 599370
is: 3OAR160

599358
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

599382
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

599346
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

M C16 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
is: C05762
name: 3-oxohexadecanoyl-acp
has only substance units: false
is: 3opalmACP
in compartment: 570138
initial amount: NaN
initial concentration: NaN

599370
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

M C16 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
is: C04633
is: 3hpalmACP
initial concentration: NaN
boundary condition: false
initial amount: NaN
in compartment: 570138
has only substance units: false
constant: false
name: 3-hydroxyhexadecanoyl-acp

R TRANS DASH RXN DASH NA DASH CPA1
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD2867
fast: false
is: NAt3pp
product: 589908
product: 589896
reactant: 589884
is: TRANS-RXN-101
name: transport of na+ [extraorganism;cytosol](secondary antiport)
reactant: 589872

589908
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

589896
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET

589884
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET

589872
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R CYT DASH UBIQUINOL DASH OXID DASH O DASH RXN
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD2428 and ACIAD2427 and ACIAD2426 and ACIAD2425
reactant: 572363
product: 572387
name: cytochrome oxidase bo
product: 572399
reactant: 572351
is: CYTBO3
fast: false
reactant: 572375
product: 572411
is: RXN0-5268

572363
type: SpeciesReference
stoichiometry: 8.0
species: M PROTON LBRACKET C RBRACKET

572387
type: SpeciesReference
stoichiometry: 2.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

572399
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

572351
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

572375
type: SpeciesReference
stoichiometry: 2.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

572411
type: SpeciesReference
stoichiometry: 8.0
species: M PROTON LBRACKET P RBRACKET

R 1 PERIOD 6 PERIOD 1 PERIOD 2 DASH RXN
type: Reaction
reactant: 609546
name: nad(p)(+) transhydrogenase (ab-specific)
product: 609595
product: 609607
product: 609583
notes: GENE_ASSOCIATION: ACIAD3078 and ACIAD3079 and ACIAD3080
reversible: false
reactant: 609570
fast: false
is: 1.6.1.2-RXN
is: THD2
reactant: 609558

609546
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

609595
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

609607
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

609583
type: SpeciesReference
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET

609570
type: SpeciesReference
stoichiometry: 2.0
species: M PROTON LBRACKET P RBRACKET

609558
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

599274
type: Reaction
reactant: 599286
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of phosphate

599286
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET E RBRACKET

M VAL LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
name: l-valine
is: val-L
is: VAL
in compartment: 570138
constant: false
is: C00183

http://identifiers.org/biomodels.db/MODEL1949107276#R_C5_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
type: Reaction
is: RXNIM-6203
fast: false
product: 617465
reactant: 617441
product: 617453
name: dicarboxylate 3oxoacyl-coa thiolase (c5:0)
notes: GENE_ASSOCIATION: ACIAD1689
reversible: true
reactant: 617429

617465
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

617441
type: SpeciesReference
stoichiometry: 1.0
species: 570895

570895
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-carboxy-3-oxobutanoyl-coa

617453
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH COA LBRACKET C RBRACKET

617429
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R 4 PERIOD 2 PERIOD 1 PERIOD 41 DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0130
product: 618429
fast: false
product: 618405
is: 4.2.1.41-RXN
product: 618417
name: 5-dehydro-4-deoxyglucarate dehydratase
reversible: false
reactant: 618393

618429
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

618405
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 654 LBRACKET C RBRACKET

M CPD DASH 654 LBRACKET C RBRACKET
type: Species
constant: false
initial concentration: NaN
in compartment: 570138
name: 2,5-dioxopentanoate
is: C00433
has only substance units: false
initial amount: NaN
is: CPD-654
boundary condition: false

618417
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

618393
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET

M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
name: 5-keto-4-deoxy-d-glucarate
boundary condition: false
constant: false
in compartment: 570138
is: C00679
has only substance units: false
is: 5-KETO-4-DEOXY-D-GLUCARATE
initial concentration: NaN
is: 5dh4dglc

R TRANS DASH RXN DASH CPD DASH 205
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1694
reactant: 593355
name: transport of pimelate [extraorganism;cytosol](secondary symport)
product: 593367
reactant: 593342
is: TRANS-RXNIM-5910
fast: false
product: 593379
reversible: true

593355
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET E RBRACKET

593367
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

593342
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

593379
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 205 LBRACKET C RBRACKET

M CARDIOLIPIN LBRACKET C RBRACKET
type: Species
is: C05980
initial concentration: NaN
is: CARDIOLIPIN
initial amount: NaN
in compartment: 570138
boundary condition: false
is: clpn140
name: cardiolipin
has only substance units: false
constant: false

M CHARGED DASH LEU DASH TRNAS LBRACKET C RBRACKET
type: Species
has only substance units: false
name: charged leucine trna
initial concentration: NaN
initial amount: NaN
in compartment: 570138
is: leutrna
is: C02047
is: CHARGED-LEU-TRNAS
boundary condition: false
constant: false

R SUCCGLUDESUCC DASH RXN
type: Reaction
reactant: 612532
product: 612556
notes: GENE_ASSOCIATION: ACIAD1289
product: 612568
is: SUCCGLUDESUCC-RXN
is: SGDS
reversible: false
fast: false
name: succinylglutamate desuccinylase
reactant: 612544

612532
type: SpeciesReference
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMATE LBRACKET C RBRACKET

M N2 DASH SUCCINYLGLUTAMATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C05931
constant: false
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false
name: n2-succinylglutamate
is: sucglu
is: N2-SUCCINYLGLUTAMATE

612556
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

612568
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

612544
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R ERYTHRON4PDEHYDROG DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2667
reactant: 593668
product: 593692
reversible: true
reactant: 593680
fast: false
is: PERD
is: ERYTHRON4PDEHYDROG-RXN
product: 593704
name: erythronate-4-phosphate dehydrogenase

593668
type: SpeciesReference
stoichiometry: 1.0
species: M ERYTHRONATE DASH 4P LBRACKET C RBRACKET

593692
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

593680
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

593704
type: SpeciesReference
stoichiometry: 1.0
species: M 3OH DASH 4P DASH OH DASH ALPHA DASH KETOBUTYRATE LBRACKET C RBRACKET

M 3OH DASH 4P DASH OH DASH ALPHA DASH KETOBUTYRATE LBRACKET C RBRACKET
type: Species
is: C06054
initial amount: NaN
constant: false
name: 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate
boundary condition: false
in compartment: 570138
has only substance units: false
initial concentration: NaN
is: 3OH-4P-OH-ALPHA-KETOBUTYRATE
is: ohpb

617284
type: Reaction
reactant: 617296
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-alanine

617296
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET E RBRACKET

R NAD DASH KIN DASH RXN
type: Reaction
fast: false
name: nad(+) kinase
product: 578344
notes: GENE_ASSOCIATION: ACIAD2231
is: NADK
product: 578332
reversible: true
is: NAD-KIN-RXN
reactant: 578308
reactant: 578320

578344
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

578332
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

578308
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

578320
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R MUCONATE DASH CYCLOISOMERASE DASH RXN
type: Reaction
product: 599958
reactant: 599946
notes: GENE_ASSOCIATION: ACIAD1446
is: MUCONATE-CYCLOISOMERASE-RXN
fast: false
reversible: true
name: muconate cycloisomerase

599958
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET C RBRACKET

599946
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 741 LBRACKET C RBRACKET

R TRANS DASH RXN DASH DEOXYURIDINE
type: Reaction
reactant: 574469
product: 574493
is: DURIt2pp
name: transport of deoxyuridine [extraorganism;cytosol](secondary symport)
reactant: 574481
is: TRANS-RXN-108F
notes: GENE_ASSOCIATION: ACIAD2389
reversible: false
product: 574505
fast: false

574469
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYURIDINE LBRACKET E RBRACKET

574493
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

574481
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

574505
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYURIDINE LBRACKET C RBRACKET

605969
type: Reaction
reactant: 605981
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of malate

605981
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET E RBRACKET

M C18 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
is: od2coa
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-octadec-2-enoyl-coa

M GERANYL DASH PP LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
is: C00341
name: geranyl-pp
in compartment: 570138
constant: false
initial concentration: NaN
is: grdp
has only substance units: false
is: GERANYL-PP

R ALDHDEHYDROG DASH RXN
type: Reaction
reactant: 599766
product: 599790
reactant: 599754
name: aminoacetaldehyde dehydrogenase
product: 599778
reversible: true
fast: false
reactant: 599742
is: ALDHDEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542

599766
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

599790
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

599754
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

599778
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

599742
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1772 LBRACKET C RBRACKET

M SIROHYDROCHLORIN LBRACKET C RBRACKET
type: Species
boundary condition: false
is: C05778
constant: false
initial concentration: NaN
is: scl
in compartment: 570138
has only substance units: false
name: sirohydrochlorin
initial amount: NaN
is: SIROHYDROCHLORIN

R FUMHYDR DASH RXN
type: Reaction
reversible: true
product: 603284
reactant: 603260
fast: false
is: FUM
notes: GENE_ASSOCIATION: ACIAD1890 or ACIAD0538
name: fumarate hydratase
is: FUMHYDR-RXN
reactant: 603272

603284
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

603260
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

603272
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R RXN0 DASH 901
type: Reaction
reactant: 616414
fast: false
reactant: 616426
is: XAND
reversible: true
reactant: 616438
product: 616462
is: RXN0-901
product: 616450
notes: GENE_ASSOCIATION: ACIAD2466 and ACIAD2467 and ACIAD2468
name: xanthine dehydrogenase

616414
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET

616426
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

616438
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

616462
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

616450
type: SpeciesReference
stoichiometry: 1.0
species: M URATE LBRACKET C RBRACKET

M URATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
constant: false
name: urate
in compartment: 570138
boundary condition: false
is: URATE
initial amount: NaN
is: urate
is: C00366
has only substance units: false

M C14 COLON 0 LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C06424
boundary condition: false
constant: false
initial concentration: NaN
initial amount: NaN
name: tetradecanoate
has only substance units: false
is: ttdca

R RXN0 DASH 884
type: Reaction
is: DMPPS
product: 587781
product: 587757
product: 587769
reactant: 587733
reactant: 587745
notes: GENE_ASSOCIATION: ACIAD3322
reactant: 587721
fast: false
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate reductase (dmpp)
reversible: true
is: RXN0-884

587781
type: SpeciesReference
stoichiometry: 1.0
species: M DI DASH CH3 DASH ALLYL DASH PPI LBRACKET C RBRACKET

M DI DASH CH3 DASH ALLYL DASH PPI LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
is: DI-CH3-ALLYL-PPI
name: dimethylallyl-pyrophosphate
has only substance units: false
initial amount: NaN
boundary condition: false
initial concentration: NaN
is: dmpp

587757
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

587769
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

587733
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

587745
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET

587721
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R HISTIDINE DASH AMMONIA DASH LYASE DASH RXN
type: Reaction
name: histidine ammonia-lyase
notes: GENE_ASSOCIATION: ACIAD0574
product: 573999
is: HISTIDINE-AMMONIA-LYASE-RXN
fast: false
reversible: false
is: HISD
reactant: 573987
product: 574011

573999
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

573987
type: SpeciesReference
stoichiometry: 1.0
species: M HIS LBRACKET C RBRACKET

574011
type: SpeciesReference
stoichiometry: 1.0
species: M UROCANATE LBRACKET C RBRACKET

M UROCANATE LBRACKET C RBRACKET
type: Species
boundary condition: false
name: urocanate
is: C00785
constant: false
initial concentration: NaN
initial amount: NaN
is: UROCANATE
in compartment: 570138
has only substance units: false

M C12 COLON 0 LBRACKET E RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
is: ddca
boundary condition: false
constant: false
in compartment: 570126
name: dodecanoate
is: DODECANOATE
is: C02679
initial amount: NaN

M PHOSPHORIBOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET
type: Species
is: C04896
boundary condition: false
initial amount: NaN
has only substance units: false
in compartment: 570138
is: prfp
is: PHOSPHORIBOSYL-FORMIMINO-AICAR-P
initial concentration: NaN
constant: false
name: phosphoribosylformiminoaicar-phosphate

579645
type: Reaction
reactant: 579657
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-glutamine

579657
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET E RBRACKET

M GLN LBRACKET E RBRACKET
type: Species
constant: false
has only substance units: false
is: C00064
initial amount: NaN
is: GLN
in compartment: 570126
name: l-glutamine
is: gln-L
boundary condition: false
initial concentration: NaN

R RXN0 DASH 384
type: Reaction
is: NTPP5
reactant: 609183
product: 609207
reactant: 609195
notes: GENE_ASSOCIATION: ACIAD3065
fast: false
name: datp pyrophosphorylase
reversible: false
product: 609219
is: RXN0-384

609183
type: SpeciesReference
stoichiometry: 1.0
species: M DATP LBRACKET C RBRACKET

609207
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

609195
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

609219
type: SpeciesReference
stoichiometry: 1.0
species: M DAMP LBRACKET C RBRACKET

M METHYL DASH GLYOXAL LBRACKET C RBRACKET
type: Species
has only substance units: false
is: mthgxl
constant: false
is: C00546
boundary condition: false
is: METHYL-GLYOXAL
name: methylglyoxal
in compartment: 570138
initial amount: NaN
initial concentration: NaN

R C5 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: ACYLCOADEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
product: 616779
reversible: false
reactant: 616755
fast: false
product: 616767
reactant: 616742
name: acyl-coa dehydrogenase (c5:0)

616779
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

616755
type: SpeciesReference
stoichiometry: 1.0
species: M C5 COLON 0 DASH COA LBRACKET C RBRACKET

M C5 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
is: C00888
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: pentanoyl-coa

616767
type: SpeciesReference
stoichiometry: 1.0
species: 570799

570799
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-pent-2-enoyl-coa

616742
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

591512
type: Reaction
product: 591536
reactant: 591524
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 2-aminobenzoate [extraorganism;cytosol](passive)

591536
type: SpeciesReference
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET

591524
type: SpeciesReference
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET E RBRACKET

M ANTHRANILATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
is: C00108
is: anth
initial concentration: NaN
in compartment: 570126
has only substance units: false
constant: false
name: 2-aminobenzoate
is: ANTHRANILATE
boundary condition: false

R C18 COLON 1 LPAREN C9 RPAREN DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c18:1(c9))
is: ENOYL-ACP-REDUCT-NADH-RXN
reactant: 590344
fast: false
reversible: false
product: 590380
product: 590368
reactant: 590356

590344
type: SpeciesReference
stoichiometry: 1.0
species: 570968

590380
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

590368
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET

590356
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R DUTP DASH PYROP DASH RXN
type: Reaction
product: 594346
reversible: false
notes: GENE_ASSOCIATION: ACIAD0901
is: DUTPDP
name: dutp pyrophosphatase
product: 594333
reactant: 594321
reactant: 594309
is: DUTP-PYROP-RXN
fast: false

594346
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

594333
type: SpeciesReference
stoichiometry: 1.0
species: M DUMP LBRACKET C RBRACKET

594321
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594309
type: SpeciesReference
stoichiometry: 1.0
species: M DUTP LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5899
type: Reaction
product: 604848
reactant: 604836
is: ASPabcpp
reactant: 604812
reactant: 604824
product: 604860
notes: GENE_ASSOCIATION: ACIAD2056 and ACIAD2058 and ACIAD2059 and ACIAD2061
fast: false
name: transport of l-aspartate [extraorganism;cytosol](primary active atp)
reversible: false
product: 604872
is: TRANS-RXNIM-5899

604848
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

604836
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

604812
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET E RBRACKET

604824
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

604860
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

604872
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R ADENODEAMIN DASH RXN
type: Reaction
reversible: false
fast: false
product: 580090
reactant: 580066
is: ADENODEAMIN-RXN
reactant: 580054
product: 580078
is: ADA
notes: GENE_ASSOCIATION: ACIAD1245
name: adenosine deaminase

580090
type: SpeciesReference
stoichiometry: 1.0
species: M INOSINE LBRACKET C RBRACKET

580066
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580054
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET

580078
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

R UREASE DASH RXN
type: Reaction
fast: false
is: UREA
reactant: 576996
product: 577008
name: urease
product: 577020
is: UREASE-RXN
reactant: 576984
reversible: false
notes: GENE_ASSOCIATION: ACIAD1089 and ACIAD1090 and ACIAD1091

576996
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

577008
type: SpeciesReference
stoichiometry: 2.0
species: M AMMONIUM LBRACKET C RBRACKET

577020
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

576984
type: SpeciesReference
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET

R NADH DASH DEHYDROGENASE DASH RXN
type: Reaction
is: NADH5
is: NADH-DEHYDROGENASE-RXN
notes: GENE_ASSOCIATION: ACIAD3633
reactant: 616935
fast: false
reactant: 616923
product: 616959
reversible: false
product: 616947
reactant: 616911
name: nadh dehydrogenase

616935
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

616923
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

616959
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

616947
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

616911
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R ACYLACYLTRAN DASH RXN
type: Reaction
reversible: false
fast: false
product: 614210
is: EDTXS1
reactant: 614198
product: 614223
is: EDTXS2
is: LAUROYLACYLTRAN-RXN
reactant: 614186
notes: GENE_ASSOCIATION: ACIAD2638 or ACIAD0484
name: acyl acyltransferase
is: MYRISTOYLACYLTRAN-RXN

614210
type: SpeciesReference
stoichiometry: 2.0
species: M ACP LBRACKET C RBRACKET

614198
type: SpeciesReference
stoichiometry: 2.0
species: 570703

570703
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-ACP_LPS

614223
type: SpeciesReference
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH A LBRACKET C RBRACKET

M KDO2 DASH LIPID DASH A LBRACKET C RBRACKET
type: Species
boundary condition: false
initial concentration: NaN
is: KDO2-LIPID-A
constant: false
has only substance units: false
is: lipa
in compartment: 570138
name: kdo2-lipid a
initial amount: NaN
is: C06026

614186
type: SpeciesReference
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH IVA LBRACKET C RBRACKET

M ETHANOL DASH AMINE LBRACKET E RBRACKET
type: Species
is: ETHANOL-AMINE
initial amount: NaN
name: ethanol-amine
initial concentration: NaN
constant: false
is: C00189
boundary condition: false
in compartment: 570126
is: etha
has only substance units: false

R C12 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
is: 3OAR120
product: 580798
fast: false
notes: GENE_ASSOCIATION: ACIAD0871
reversible: false
is: 3-OXOACYL-ACP-REDUCT-RXN
reactant: 580762
reactant: 580774
product: 580786
name: 3oxoacyl-acp reductase (c12:0)

580798
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OHLAUROYL DASH ACP LBRACKET C RBRACKET

580762
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

580774
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

580786
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

600921
type: Reaction
product: 600945
reactant: 600933
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of 2,3-butanediol [extraorganism;cytosol](passive)

600945
type: SpeciesReference
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET C RBRACKET

600933
type: SpeciesReference
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET E RBRACKET

M BUTANEDIOL LBRACKET E RBRACKET
type: Species
is: BUTANEDIOL
initial concentration: NaN
has only substance units: false
is: C03044
initial amount: NaN
constant: false
name: 2,3-butanediol
boundary condition: false
in compartment: 570126

R TRANS DASH RXN DASH DEOXYCYTIDINE
type: Reaction
is: DCYTt2pp
reactant: 612134
product: 612158
fast: false
reactant: 612122
product: 612146
reversible: false
notes: GENE_ASSOCIATION: ACIAD2389
name: transport of deoxycytidine [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-108D

612134
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

612158
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET C RBRACKET

612122
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYCYTIDINE LBRACKET E RBRACKET

612146
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

M PROPIONYL DASH P LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
is: ppap
constant: false
initial amount: NaN
has only substance units: false
name: propionyl-p
is: PROPIONYL-P
initial concentration: NaN
is: C02876

R C6 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
reversible: false
is: ENOYL-COA-HYDRAT-RXN
is: ECOAH2
reactant: 613979
name: enoyl-coa hydratase (c6:0)
product: 614003
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
reactant: 613991
fast: false

613979
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C6 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
is: C05271
in compartment: 570138
is: hx2coa
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
name: trans-hex-2-enoyl-coa
initial concentration: NaN

614003
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

M C6 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
is: OH-HEXANOYL-COA
in compartment: 570138
initial amount: NaN
is: 3hhcoa
name: 3-hydroxyhexanoyl-coa
is: C05268
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN

613991
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580514
type: Reaction
product: 580566
reactant: 580554
reactant: 580542
reactant: 580529
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic acyl-alcohol of wax assembly

580566
type: SpeciesReference
stoichiometry: 1.0
species: 570234

580554
type: SpeciesReference
stoichiometry: 0.052
species: M C16 COLON 0 DASH OH LBRACKET C RBRACKET

M C16 COLON 0 DASH OH LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: hexadecanol
constant: false
has only substance units: false
boundary condition: false
initial concentration: NaN
is: CPD-348
is: C00823
initial amount: NaN

580542
type: SpeciesReference
stoichiometry: 0.475
species: 570378

570378
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enol

580529
type: SpeciesReference
stoichiometry: 0.473
species: 570318

570655
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,trans-hex-2,4-enoyl-coa

R ABC DASH 70 DASH RXN
type: Reaction
reactant: 602082
reversible: false
product: 602118
product: 602106
product: 602130
reactant: 602069
name: transport of so42- [extraorganism;cytosol](primary active atp)
fast: false
reactant: 602094
is: SULabcpp
is: ABC-70-RXN
notes: GENE_ASSOCIATION: ( ACIAD3369 or ACIAD2591 ) and ACIAD2594 and ACIAD2595 and ACIAD2596

602082
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

602118
type: SpeciesReference
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET

M SULFATE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
is: so4
is: C00059
boundary condition: false
has only substance units: false
is: SULFATE
initial amount: NaN
constant: false
name: so42-

602106
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

602130
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

602069
type: SpeciesReference
stoichiometry: 1.0
species: M SULFATE LBRACKET E RBRACKET

602094
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

M CHOLINE LBRACKET E RBRACKET
type: Species
is: C00114
has only substance units: false
initial amount: NaN
is: CHOLINE
boundary condition: false
is: chol
in compartment: 570126
initial concentration: NaN
name: choline
constant: false

R RXN0 DASH 366
type: Reaction
name: guanosine hydrolase
notes: GENE_ASSOCIATION: ACIAD2386
reactant: 607832
product: 607868
is: RXN0-366
reversible: false
reactant: 607844
fast: false
product: 607856

607832
type: SpeciesReference
stoichiometry: 1.0
species: M GUANOSINE LBRACKET C RBRACKET

M GUANOSINE LBRACKET C RBRACKET
type: Species
is: GUANOSINE
is: C00387
initial concentration: NaN
constant: false
boundary condition: false
in compartment: 570138
has only substance units: false
name: guanosine
is: gsn
initial amount: NaN

607868
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET

607844
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

607856
type: SpeciesReference
stoichiometry: 1.0
species: M GUANINE LBRACKET C RBRACKET

R SHIKIMATE DASH KINASE DASH RXN
type: Reaction
product: 610786
notes: GENE_ASSOCIATION: ACIAD3354
fast: false
reversible: false
product: 610774
reactant: 610762
reactant: 610750
name: shikimate-kinase
is: SHKK
is: SHIKIMATE-KINASE-RXN

610786
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

610774
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE DASH 5P LBRACKET C RBRACKET

M SHIKIMATE DASH 5P LBRACKET C RBRACKET
type: Species
has only substance units: false
is: skm5p
is: SHIKIMATE-5P
is: C03175
initial concentration: NaN
name: shikimate-3-phosphate
initial amount: NaN
in compartment: 570138
constant: false
boundary condition: false

610762
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

610750
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET C RBRACKET

R ISOCHORSYN DASH RXN
type: Reaction
product: 587000
reactant: 586988
notes: GENE_ASSOCIATION: ACIAD2776
is: ISOCHORSYN-RXN
is: ICHORS
fast: false
reversible: false
name: isochorismate mutase

587000
type: SpeciesReference
stoichiometry: 1.0
species: M ISOCHORISMATE LBRACKET C RBRACKET

M ISOCHORISMATE LBRACKET C RBRACKET
type: Species
is: C00885
is: ichor
initial amount: NaN
in compartment: 570138
has only substance units: false
boundary condition: false
constant: false
is: ISOCHORISMATE
initial concentration: NaN
name: isochorismate

586988
type: SpeciesReference
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET

574734
type: Reaction
reactant: 574746
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cis,cis-muconate

574746
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET E RBRACKET

M CIS DASH CIS DASH MUCONATE LBRACKET E RBRACKET
type: Species
name: cis,cis-muconate
boundary condition: false
is: C02480
is: CIS-CIS-MUCONATE
in compartment: 570126
initial amount: NaN
has only substance units: false
initial concentration: NaN
constant: false

R PSERPHOSPHA DASH RXN
type: Reaction
is: PSP L
fast: false
reactant: 588658
product: 588682
notes: GENE_ASSOCIATION: ACIAD3567
reactant: 588646
reversible: false
name: phosphoserine phosphatase
product: 588670
is: PSERPHOSPHA-RXN

588658
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

588682
type: SpeciesReference
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET

588646
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH P DASH SERINE LBRACKET C RBRACKET

588670
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

592596
type: Reaction
fast: false
name: generic udp-polysaccharide of lps assembly
notes: GENE_ASSOCIATION:
reactant: 592620
product: 592668
reversible: false
product: 592656
reactant: 592608
reactant: 592632
product: 592680
product: 592644

592620
type: SpeciesReference
stoichiometry: 1.67
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET

592668
type: SpeciesReference
stoichiometry: 0.67
species: M UDP LBRACKET C RBRACKET

592656
type: SpeciesReference
stoichiometry: 1.66
species: M GDP LBRACKET C RBRACKET

592608
type: SpeciesReference
stoichiometry: 1.66
species: M GDP DASH MANNOSE LBRACKET C RBRACKET

M GDP DASH MANNOSE LBRACKET C RBRACKET
type: Species
is: C00096
initial concentration: NaN
is: GDP-MANNOSE
boundary condition: false
has only substance units: false
name: gdp-mannose
initial amount: NaN
constant: false
is: gdpmann
in compartment: 570138

592632
type: SpeciesReference
stoichiometry: 1.67
species: M DTDP DASH RHAMNOSE LBRACKET C RBRACKET

592680
type: SpeciesReference
stoichiometry: 1.67
species: M TDP LBRACKET C RBRACKET

M TDP LBRACKET C RBRACKET
type: Species
has only substance units: false
is: TDP
initial concentration: NaN
is: dtdp
boundary condition: false
initial amount: NaN
constant: false
is: C00363
name: dtdp
in compartment: 570138

592644
type: SpeciesReference
stoichiometry: 1.0
species: 570414

R TRYPTOPHAN DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reactant: 595901
reactant: 595889
is: TRPTRS
name: tryptophan--trna ligase
reversible: false
product: 595913
reactant: 595877
product: 595937
product: 595925
is: TRYPTOPHAN--TRNA-LIGASE-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD2871

595901
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

595889
type: SpeciesReference
stoichiometry: 1.0
species: M TRP LBRACKET C RBRACKET

M TRP LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: trp-L
is: C00078
name: l-tryptophan
initial amount: NaN
initial concentration: NaN
has only substance units: false
constant: false
is: TRP
boundary condition: false

595913
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH TRP DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH TRP DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
is: trptrna
constant: false
has only substance units: false
initial concentration: NaN
name: charged tryptophan trna
is: CHARGED-TRP-TRNAS
in compartment: 570138
initial amount: NaN
is: C03512

595877
type: SpeciesReference
stoichiometry: 1.0
species: M TRP DASH TRNAS LBRACKET C RBRACKET

595937
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

595925
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R RXN0 DASH 299
type: Reaction
name: taurine dioxygenase
fast: false
is: RXN0-299
notes: GENE_ASSOCIATION: ACIAD1592 or ACIAD1600
product: 580030
is: TAUDO
reactant: 579982
product: 580018
reactant: 579994
product: 580006
reversible: false
reactant: 579969
product: 580042

580030
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1772 LBRACKET C RBRACKET

579982
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

580018
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

579994
type: SpeciesReference
stoichiometry: 1.0
species: M TAURINE LBRACKET C RBRACKET

M TAURINE LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
is: TAURINE
name: taurine
is: taur
initial concentration: NaN
has only substance units: false
initial amount: NaN
constant: false
is: C00245

580006
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET

579969
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

580042
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R TRANS DASH RXN DASH 1
type: Reaction
product: 585351
reactant: 585338
notes: GENE_ASSOCIATION: ACIAD1800 or ACIAD3593
is: TRANS-RXN-1
is: FORt2pp
fast: false
reversible: false
name: transport of formate [cytosol;extraorganism](passive)

585351
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET E RBRACKET

M FORMATE LBRACKET E RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
in compartment: 570126
name: formate
initial amount: NaN
constant: false
is: C00058
is: for
is: FORMATE
boundary condition: false

585338
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET

M ARABINOSE DASH 5P LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
is: C01112
in compartment: 570138
boundary condition: false
has only substance units: false
name: d-arabinose 5-phosphate
is: ARABINOSE-5P
is: ara5p
initial concentration: NaN

M SUPER DASH OXIDE LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
name: o2-
is: o2s
is: C00704
has only substance units: false
is: SUPER-OXIDE
in compartment: 570138
constant: false
initial concentration: NaN

R C10 COLON 0 DASH COA DASH THIOLASE DASH RXN
type: Reaction
is: FACOAE100
is: THIOESTER-RXN
reactant: 579681
fast: false
product: 579705
product: 579693
reversible: false
reactant: 579669
name: acyl-coa thiolase (c10:0)
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023

579681
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

579705
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

579693
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET C RBRACKET

579669
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET

R 4OH2OXOGLUTARALDOL DASH RXN
type: Reaction
product: 593415
product: 593403
reactant: 593391
notes: GENE_ASSOCIATION: ACIAD0543
is: 4OH2OXOGLUTARALDOL-RXN
fast: false
reversible: true
name: 4-hydroxy-2-oxoglutarate aldolase

593415
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

593403
type: SpeciesReference
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET

593391
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH 4 DASH HYDROXY DASH 2 DASH KETO DASH GLUTARATE LBRACKET C RBRACKET

M D DASH 4 DASH HYDROXY DASH 2 DASH KETO DASH GLUTARATE LBRACKET C RBRACKET
type: Species
is: D-4-HYDROXY-2-KETO-GLUTARATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: d-4-hydroxy-2-keto-glutarate

R ERYTH4PDEHYDROG DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1255
reactant: 608241
is: ERYTH4PDEHYDROG-RXN
product: 608253
is: E4PD
product: 608265
reactant: 608229
fast: false
name: d-erythrose 4-phosphate dehydrogenase
reactant: 608217
reversible: true

608241
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

608253
type: SpeciesReference
stoichiometry: 1.0
species: M ERYTHRONATE DASH 4P LBRACKET C RBRACKET

608265
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

608229
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

608217
type: SpeciesReference
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET

M GLYCEROL LBRACKET E RBRACKET
type: Species
initial concentration: NaN
constant: false
has only substance units: false
initial amount: NaN
is: GLYCEROL
is: C00116
boundary condition: false
in compartment: 570126
is: glyc
name: glycerol

R TRANS DASH RXNIM DASH 5747
type: Reaction
product: 605861
reactant: 605849
notes: GENE_ASSOCIATION: ACIAD2280 or ACIAD1036
is: TRANS-RXNIM-5747
fast: false
reversible: true
name: transport of betaine [extraorganism;cytosol](passive)

605861
type: SpeciesReference
stoichiometry: 1.0
species: M BETAINE LBRACKET C RBRACKET

M BETAINE LBRACKET C RBRACKET
type: Species
is: BETAINE
is: glyb
initial concentration: NaN
has only substance units: false
boundary condition: false
constant: false
initial amount: NaN
is: C00719
in compartment: 570138
name: betaine

605849
type: SpeciesReference
stoichiometry: 1.0
species: M BETAINE LBRACKET E RBRACKET

R WAX DASH ESTER DASH SYNTHASE DASH RXN
type: Reaction
is: 2.3.1.75-RXN
reactant: 605583
reversible: false
notes: GENE_ASSOCIATION: ACIAD0832
product: 605595
reactant: 605571
name: wax ester synthase
product: 605607
fast: false

605583
type: SpeciesReference
stoichiometry: 1.0
species: 570234

605595
type: SpeciesReference
stoichiometry: 1.0
species: 570859

605571
type: SpeciesReference
stoichiometry: 1.0
species: 570535

605607
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

571100
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 7-carboxyheptanoyl-coa

R QUINOPRIBOTRANS DASH RXN
type: Reaction
product: 589343
is: NNDPR
reactant: 589331
product: 589355
fast: false
reactant: 589319
notes: GENE_ASSOCIATION: ACIAD0062
product: 589367
is: QUINOPRIBOTRANS-RXN
name: nicotinate-nucleotide pyrophosphorylase (carboxylating)
reversible: false

589343
type: SpeciesReference
stoichiometry: 1.0
species: 571064

589331
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

589355
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

589319
type: SpeciesReference
stoichiometry: 1.0
species: M QUINOLINATE LBRACKET C RBRACKET

M QUINOLINATE LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
boundary condition: false
name: quinolinate
is: QUINOLINATE
is: C03722
initial concentration: NaN
in compartment: 570138
is: quln
constant: false

589367
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

597465
type: Reaction
reactant: 597477
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of adenosine

597477
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSINE LBRACKET E RBRACKET

R 1 DASH ACYLGLYCEROL DASH 3 DASH P DASH ACYLTRANSFER DASH TAG DASH RXN
type: Reaction
name: glycerol-3-phosphate acyltransferase
product: 576779
reactant: 576767
notes: GENE_ASSOCIATION: ACIAD3232
fast: false
product: 576791
reversible: false
is: 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN
reactant: 576755

576779
type: SpeciesReference
stoichiometry: 1.0
species: 570450

576767
type: SpeciesReference
stoichiometry: 1.0
species: 570198

570198
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-ACP_TAG

576791
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

576755
type: SpeciesReference
stoichiometry: 1.0
species: 570258

617308
type: Reaction
reactant: 617320
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-methionine

617320
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET E RBRACKET

599622
type: Reaction
reactant: 599634
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyadenosine

599634
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET E RBRACKET

M ARG DASH TRNAS LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C01636
is: trnaarg
boundary condition: false
constant: false
name: arginine trna
initial concentration: NaN
is: ARG-TRNAS
initial amount: NaN
in compartment: 570138

R HISTPRATPHYD DASH RXN
type: Reaction
reversible: false
reactant: 572603
product: 572639
is: HISTPRATPHYD-RXN
name: phosphoribosyl-atp pyrophosphatase
is: PRATPP
fast: false
reactant: 572615
notes: GENE_ASSOCIATION: ACIAD0380
product: 572627

572603
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH ATP LBRACKET C RBRACKET

572639
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH AMP LBRACKET C RBRACKET

M PHOSPHORIBOSYL DASH AMP LBRACKET C RBRACKET
type: Species
initial amount: NaN
has only substance units: false
in compartment: 570138
is: PHOSPHORIBOSYL-AMP
is: C02741
boundary condition: false
is: prbamp
initial concentration: NaN
constant: false
name: phosphoribosyl-amp

572615
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

572627
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R AMP DASH DEPHOSPHORYLATION DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
fast: false
product: 586050
is: NTD7
product: 586038
reversible: false
reactant: 586026
is: AMP-DEPHOSPHORYLATION-RXN
reactant: 586014
name: amp nucleotidase

586050
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSINE LBRACKET C RBRACKET

586038
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

586026
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

586014
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

595647
type: Reaction
reactant: 595659
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of sorbate

595659
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET E RBRACKET

R PRPPAMIDOTRANS DASH RXN
type: Reaction
name: amidophosphoribosyltransferase
reactant: 594948
is: GLUPRT
product: 594996
product: 595008
reactant: 594972
fast: false
product: 594984
reactant: 594960
is: PRPPAMIDOTRANS-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1323

594948
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

594996
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

595008
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

594972
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594984
type: SpeciesReference
stoichiometry: 1.0
species: M PRA LBRACKET C RBRACKET

594960
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

M CYTIDINE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: C00475
has only substance units: false
in compartment: 570126
initial concentration: NaN
is: CYTIDINE
name: cytidine
initial amount: NaN
is: cytd
constant: false

R C14 COLON 1 LPAREN C5 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 585157
fast: false
name: hydroxyacyl-coa dehydrogenase (c14:1(c5))
product: 585145
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
reversible: false
reactant: 585121
reactant: 585133
is: OHACYL-COA-DEHYDROG-RXN

585157
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

585145
type: SpeciesReference
stoichiometry: 1.0
species: 570571

570571
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxotetradec-4-enoyl-coa

585121
type: SpeciesReference
stoichiometry: 1.0
species: 570547

585133
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R GDP DASH MANNOSE DASH 6 DASH DEHYDROGENASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0087
product: 597139
fast: false
reactant: 597103
reactant: 597115
reversible: true
product: 597127
is: GDP-MANNOSE-6-DEHYDROGENASE-RXN
name: gdp-mannose 6-dehydrogenase
reactant: 597091

597139
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1828 LBRACKET C RBRACKET

M CPD DASH 1828 LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
has only substance units: false
is: CPD-1828
boundary condition: false
name: gdp-mannuronate
initial concentration: NaN
initial amount: NaN
is: C00976

597103
type: SpeciesReference
stoichiometry: 2.0
species: M NAD LBRACKET C RBRACKET

597115
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

597127
type: SpeciesReference
stoichiometry: 2.0
species: M NADH LBRACKET C RBRACKET

597091
type: SpeciesReference
stoichiometry: 1.0
species: M GDP DASH MANNOSE LBRACKET C RBRACKET

M HOMO DASH SER LBRACKET E RBRACKET
type: Species
boundary condition: false
is: hom-L
initial amount: NaN
in compartment: 570126
is: C00263
initial concentration: NaN
constant: false
is: HOMO-SER
has only substance units: false
name: homoserine

M TTP LBRACKET C RBRACKET
type: Species
name: ttp
is: TTP
is: dttp
initial concentration: NaN
in compartment: 570138
is: C00459
boundary condition: false
constant: false
has only substance units: false
initial amount: NaN

M ETHANOL DASH AMINE LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
is: etha
initial concentration: NaN
initial amount: NaN
name: ethanol-amine
in compartment: 570138
is: C00189
is: ETHANOL-AMINE
has only substance units: false

R HYDROXYBENZALDEHYDE DASH OXIDATION DASH NAD DASH RXN
type: Reaction
fast: false
reversible: true
name: hydroxybenzaldehyde dehydrogenase
notes: GENE_ASSOCIATION: ACIAD1430 or ACIAD1725
product: 575298
is: HYDROXYBENZALDEHYDE-OXIDATION-NAD-RXN
reactant: 575274
product: 575286
reactant: 575250
reactant: 575262

575298
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET

575274
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

575286
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

575250
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZALDEHYDE LBRACKET C RBRACKET

M 4 DASH HYDROXYBENZALDEHYDE LBRACKET C RBRACKET
type: Species
is: C00633
in compartment: 570138
constant: false
boundary condition: false
name: 4-hydroxybenzaldehyde
initial concentration: NaN
has only substance units: false
is: 4-HYDROXYBENZALDEHYDE
initial amount: NaN

575262
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R RXN0 DASH 305
type: Reaction
product: 575214
reactant: 575202
notes: GENE_ASSOCIATION: ACIAD3075
is: RXN0-305
is: HPYRI
fast: false
reversible: true
name: hydroxypyruvate isomerase

575214
type: SpeciesReference
stoichiometry: 1.0
species: M TARTRONATE DASH S DASH ALD LBRACKET C RBRACKET

M TARTRONATE DASH S DASH ALD LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: tartronate semialdehyde
initial amount: NaN
has only substance units: false
is: C01146
is: 2h3oppan
is: TARTRONATE-S-ALD
boundary condition: false
initial concentration: NaN
constant: false

575202
type: SpeciesReference
stoichiometry: 1.0
species: M OH DASH PYR LBRACKET C RBRACKET

R MALSYN DASH RXN
type: Reaction
reactant: 585242
is: MALSYN-RXN
reactant: 585254
product: 585266
name: malate synthase
reactant: 585229
reversible: false
is: MALS
fast: false
notes: GENE_ASSOCIATION: ACIAD2335
product: 585278

585242
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

585254
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

585266
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

585229
type: SpeciesReference
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET

585278
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R PHOSGLUCOSAMINEMUT DASH RXN
type: Reaction
product: 616899
reactant: 616887
notes: GENE_ASSOCIATION: ACIAD3502
is: PHOSGLUCOSAMINEMUT-RXN
is: PGAMT
fast: false
reversible: true
name: phosphoglucosamine mutase

616899
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCOSAMINE DASH 1P LBRACKET C RBRACKET

616887
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GLUCOSAMINE DASH 6 DASH P LBRACKET C RBRACKET

M D DASH GLUCOSAMINE DASH 6 DASH P LBRACKET C RBRACKET
type: Species
is: gam6p
constant: false
initial amount: NaN
boundary condition: false
has only substance units: false
in compartment: 570138
name: d-glucosamine-6-phosphate
initial concentration: NaN
is: C00352
is: D-GLUCOSAMINE-6-P

570210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans,cis-octadec-2,9-enoyl-coa

M GLC LBRACKET E RBRACKET
type: Species
initial concentration: NaN
constant: false
is: GLC
is: C00031
name: beta-d-glucose
has only substance units: false
boundary condition: false
in compartment: 570126
is: glc-D
initial amount: NaN

R GMKALT DASH RXN
type: Reaction
reactant: 615392
is: DGK1
product: 615416
reactant: 615404
is: GMKALT-RXN
notes: GENE_ASSOCIATION: ACIAD3324
product: 615428
reversible: false
name: dgmp kinase
fast: false

615392
type: SpeciesReference
stoichiometry: 1.0
species: M DGMP LBRACKET C RBRACKET

M DGMP LBRACKET C RBRACKET
type: Species
has only substance units: false
constant: false
name: dgmp
in compartment: 570138
is: DGMP
is: C00362
boundary condition: false
is: dgmp
initial amount: NaN
initial concentration: NaN

615416
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

615404
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

615428
type: SpeciesReference
stoichiometry: 1.0
species: M DGDP LBRACKET C RBRACKET

R UDPNACETYLMURAMATEDEHYDROG DASH RXN
type: Reaction
fast: false
product: 582086
product: 582098
name: udp-n-acetylmuramate dehydrogenase
is: UAPGR
reactant: 582062
is: UDPNACETYLMURAMATEDEHYDROG-RXN
reactant: 582074
reversible: true
notes: GENE_ASSOCIATION: ACIAD1945

582086
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYLMURAMATE LBRACKET C RBRACKET

582098
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

582062
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH ACETYL DASH CARBOXYVINYL DASH GLUCOSAMINE LBRACKET C RBRACKET

582074
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

R C8 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
name: 2enoyl-acp reductase (c8:0)
is: EAR80x
is: ENOYL-ACP-REDUCT-NADH-RXN
reversible: false
product: 598320
reactant: 598308
product: 598332
fast: false
notes: GENE_ASSOCIATION: ACIAD3116
reactant: 598296

598320
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

598308
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

M C8 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
in compartment: 570138
has only substance units: false
constant: false
is: C05751
is: toct2eACP
boundary condition: false
name: trans-octa-2-enoyl-acp

598332
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH ACP LBRACKET C RBRACKET

598296
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R ACETYLORNDEACET DASH RXN
type: Reaction
reactant: 573675
is: ACODA
product: 573699
is: ACETYLORNDEACET-RXN
fast: false
name: acetylornithine deacetylase
product: 573687
notes: GENE_ASSOCIATION: ACIAD3489
reactant: 573663
reversible: false

573675
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

573699
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

573687
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET

573663
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET

M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: N-ALPHA-ACETYLORNITHINE
name: n-alpha-acetylornithine
has only substance units: false
in compartment: 570138
initial concentration: NaN
is: C00437
boundary condition: false
constant: false
is: acorn

R ALCOHOL DASH DEHYDROG DASH RXN
type: Reaction
fast: false
reversible: true
reactant: 598695
reactant: 598707
is: ALCOHOL-DEHYDROG-RXN
product: 598731
product: 598719
is: ALCD2x
name: ethanol dehydroganase
notes: GENE_ASSOCIATION: ACIAD3616 or ACIAD2929 or ACIAD2015 or ACIAD3339 or ACIAD1950

598695
type: SpeciesReference
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET

598707
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

598731
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

598719
type: SpeciesReference
stoichiometry: 1.0
species: M ETOH LBRACKET C RBRACKET

M ETOH LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
is: etoh
is: ETOH
is: C00469
initial amount: NaN
boundary condition: false
initial concentration: NaN
has only substance units: false
name: ethanol

R L DASH GLN DASH FRUCT DASH 6 DASH P DASH AMINOTRANS DASH RXN
type: Reaction
product: 612351
fast: false
notes: GENE_ASSOCIATION: ACIAD3576
reactant: 612327
name: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
reversible: false
is: L-GLN-FRUCT-6-P-AMINOTRANS-RXN
product: 612363
is: GF6PTA
reactant: 612339

612351
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GLUCOSAMINE DASH 6 DASH P LBRACKET C RBRACKET

612327
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

612363
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

612339
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET

R DIHYDROOROT DASH RXN
type: Reaction
product: 583303
fast: false
is: DHORTS
reversible: true
is: DIHYDROOROT-RXN
notes: GENE_ASSOCIATION: ACIAD1150 or ACIAD1419
reactant: 583291
reactant: 583279
name: dihydroorotase

583303
type: SpeciesReference
stoichiometry: 1.0
species: M CARBAMYUL DASH L DASH ASPARTATE LBRACKET C RBRACKET

M CARBAMYUL DASH L DASH ASPARTATE LBRACKET C RBRACKET
type: Species
is: cbasp
initial concentration: NaN
initial amount: NaN
constant: false
is: CARBAMYUL-L-ASPARTATE
name: carbamoyl-l-aspartate
boundary condition: false
in compartment: 570138
is: C00438
has only substance units: false

583291
type: SpeciesReference
stoichiometry: 1.0
species: M DI DASH H DASH OROTATE LBRACKET C RBRACKET

583279
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R ACSERLY DASH RXN
type: Reaction
reactant: 610376
product: 610388
reactant: 610364
is: CYSS
product: 610400
is: ACSERLY-RXN
name: cysteine synthase
reversible: true
notes: GENE_ASSOCIATION: ACIAD1662 or ACIAD3071
fast: false

610376
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYLSERINE LBRACKET C RBRACKET

610388
type: SpeciesReference
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET

610364
type: SpeciesReference
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET

610400
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

R TRIACYLGLYCEROL DASH LIPASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3309 or ACIAD1121
name: triacylglycerol lipase
is: TRIACYLGLYCEROL-LIPASE-RXN
product: 574722
reactant: 574686
product: 574710
reversible: false
reactant: 574698
fast: false

574722
type: SpeciesReference
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET

M DIACYLGLYCEROL LBRACKET C RBRACKET
type: Species
is: C00641
constant: false
boundary condition: false
in compartment: 570138
name: 1,2-diacylglycerol
initial concentration: NaN
has only substance units: false
initial amount: NaN
is: DIACYLGLYCEROL

574686
type: SpeciesReference
stoichiometry: 1.0
species: M TRIACYLGLYCEROL LBRACKET C RBRACKET

574710
type: SpeciesReference
stoichiometry: 1.0
species: 570487

570487
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: AFATTYACID_TAG

574698
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R C14 COLON 1 LPAREN C5 RPAREN DASH COA DASH THIOLASE DASH RXN
type: Reaction
reactant: 618755
fast: false
product: 618779
name: acyl-coa thiolase (c14:1(c5))
product: 618791
is: THIOESTER-RXN
reactant: 618767
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reversible: false

618755
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

618779
type: SpeciesReference
stoichiometry: 1.0
species: 570643

618791
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

618767
type: SpeciesReference
stoichiometry: 1.0
species: 570607

574758
type: Reaction
reactant: 574770
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of citrate

574770
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET E RBRACKET

M CIT LBRACKET E RBRACKET
type: Species
constant: false
is: CIT
is: cit
has only substance units: false
in compartment: 570126
name: citrate
initial concentration: NaN
boundary condition: false
is: C00158
initial amount: NaN

R ATPSYN DASH RXN
type: Reaction
product: 585569
fast: false
reactant: 585532
name: h(+)-transporting atp synthase
product: 585544
notes: GENE_ASSOCIATION: ACIAD0178 and ACIAD0180 and ACIAD0182 and ACIAD0183 and ACIAD0184 and ACIAD0185 and ACIAD0186 and ACIAD0187 and ACIAD0188
is: ATPSYN-RXN
product: 585557
is: ATPS4rpp
reversible: true
reactant: 585520
reactant: 585508

585569
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

585532
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

585544
type: SpeciesReference
stoichiometry: 3.0
species: M PROTON LBRACKET C RBRACKET

585557
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

585520
type: SpeciesReference
stoichiometry: 4.0
species: M PROTON LBRACKET P RBRACKET

585508
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R ACETOLACTSYN DASH RXN
type: Reaction
is: ACETOLACTSYN-RXN
notes: GENE_ASSOCIATION: ( ACIAD0999 or ACIAD3104 ) and ACIAD3103
is: ACLS
fast: false
product: 612665
name: acetolactate synthase
reversible: false
product: 612653
reactant: 612640

612665
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

612653
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH ACETO DASH LACTATE LBRACKET C RBRACKET

612640
type: SpeciesReference
stoichiometry: 2.0
species: M PYRUVATE LBRACKET C RBRACKET

R SUCC DASH FUM DASH OXRED DASH RXN
type: Reaction
is: SUCC-FUM-OXRED-RXN
name: succinate dehydrogenase
reactant: 579283
reactant: 579296
fast: false
is: SUCDi
product: 579320
product: 579308
notes: GENE_ASSOCIATION: ACIAD2882 and ACIAD2881 and ACIAD2880 and ACIAD2879
reversible: true

579283
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

579296
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

579320
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

579308
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

R 1 PERIOD 2 PERIOD 1 PERIOD 27 DASH RXN
type: Reaction
reversible: false
reactant: 602695
name: methylmalonate-semialdehyde dehydrogenase (acylating)
reactant: 602683
is: 1.2.1.27-RXN
product: 602708
reactant: 602671
notes: GENE_ASSOCIATION: ACIAD1604
fast: false
product: 602732
product: 602720

602695
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

602683
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

602708
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

602671
type: SpeciesReference
stoichiometry: 1.0
species: M CH3 DASH MALONATE DASH S DASH ALD LBRACKET C RBRACKET

602732
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET

602720
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R C16 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
reactant: 614015
notes: GENE_ASSOCIATION: ACIAD1381
product: 614039
name: 3hydroxyacyl-acp dehydratase (c16:0)
fast: false
is: 3HAD160
reversible: false
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
product: 614027

614015
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

614039
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

614027
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

R PGPPHOSPHA DASH RXN
type: Reaction
reactant: 607976
product: 608013
name: phosphatidylglycerophosphatase
is: PGPPHOSPHA-RXN
reactant: 607988
reversible: false
notes: GENE_ASSOCIATION: ACIAD3574 or ACIAD2942 or ACIAD0554
fast: false
product: 608000

607976
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL DASH P LBRACKET C RBRACKET

M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL DASH P LBRACKET C RBRACKET
type: Species
is: C03892
initial concentration: NaN
is: L-1-PHOSPHATIDYL-GLYCEROL-P
constant: false
boundary condition: false
in compartment: 570138
has only substance units: false
name: generic l-1-phosphatidyl-glycerol-phosphate
initial amount: NaN

608013
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET

607988
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

608000
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R HISTCYCLOHYD DASH RXN
type: Reaction
name: phosphoribosyl-amp cyclohydrolase
is: PRAMPC
reactant: 597635
notes: GENE_ASSOCIATION: ACIAD0380
is: HISTCYCLOHYD-RXN
reversible: false
fast: false
reactant: 597622
product: 597648

597635
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

597622
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH AMP LBRACKET C RBRACKET

597648
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET

R PRTRANS DASH RXN
type: Reaction
product: 599322
reactant: 599310
is: PRTRANS-RXN
product: 599334
fast: false
reactant: 599298
reversible: true
name: anthranilate phosphoribosyltransferase
is: ANPRT
notes: GENE_ASSOCIATION: ACIAD2462

599322
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH LPAREN 5 DASH PHOSPHORIBOSYL RPAREN DASH ANTHRANILATE LBRACKET C RBRACKET

599310
type: SpeciesReference
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET

599334
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

599298
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

617923
type: Reaction
reactant: 617935
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of thymidine

617935
type: SpeciesReference
stoichiometry: 1.0
species: M THYMIDINE LBRACKET E RBRACKET

R FGAMSYN DASH RXN
type: Reaction
product: 594140
notes: GENE_ASSOCIATION: ACIAD2612
product: 594152
reactant: 594104
is: FGAMSYN-RXN
reactant: 594092
name: phosphoribosylformylglycinamidine synthase
reversible: false
reactant: 594080
product: 594128
is: PRFGS
fast: false
reactant: 594068
product: 594116

594140
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

594152
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

594104
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

594092
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594080
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET

594128
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH N DASH FORMYLGLYCINEAMIDINE LBRACKET C RBRACKET

M 5 DASH PHOSPHORIBOSYL DASH N DASH FORMYLGLYCINEAMIDINE LBRACKET C RBRACKET
type: Species
constant: false
is: 5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE
name: 5-phosphoribosyl-n-formylglycineamidine
is: C04640
initial amount: NaN
in compartment: 570138
is: fpram
boundary condition: false
has only substance units: false
initial concentration: NaN

594068
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

594116
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R ASPARTATE DASH RACEMASE DASH RXN
type: Reaction
product: 609932
reactant: 609920
notes: GENE_ASSOCIATION: ACIAD0318
is: ASPARTATE-RACEMASE-RXN
fast: false
reversible: true
name: aspartate racemase

609932
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 302 LBRACKET C RBRACKET

609920
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

R GLUTAMATESYN DASH RXN
type: Reaction
is: GLUSy
is: GLUTAMATESYN-RXN
product: 577948
reactant: 577912
reactant: 577924
reversible: false
notes: GENE_ASSOCIATION: ACIAD3350 and ACIAD3349 or ACIAD2525 and ACIAD2526 and ACIAD2527
product: 577936
fast: false
name: glutamate synthase (nadph)
reactant: 577900

577948
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

577912
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

577924
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

577936
type: SpeciesReference
stoichiometry: 2.0
species: M GLT LBRACKET C RBRACKET

577900
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

M DUDP LBRACKET C RBRACKET
type: Species
in compartment: 570138
boundary condition: false
has only substance units: false
name: dudp
is: C01346
is: DUDP
constant: false
initial amount: NaN
is: dudp
initial concentration: NaN

R VALINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
is: VALINE--TRNA-LIGASE-RXN
name: valine--trna ligase
is: VALTRS
product: 613835
notes: GENE_ASSOCIATION: ACIAD2950
reactant: 613786
fast: false
reactant: 613810
reversible: false
reactant: 613798
product: 613822
product: 613847

613835
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH VAL DASH TRNAS LBRACKET C RBRACKET

613786
type: SpeciesReference
stoichiometry: 1.0
species: M VAL LBRACKET C RBRACKET

613810
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

613798
type: SpeciesReference
stoichiometry: 1.0
species: M VAL DASH TRNAS LBRACKET C RBRACKET

M VAL DASH TRNAS LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
name: valine trna
is: trnaval
in compartment: 570138
is: C01653
is: VAL-TRNAS
constant: false
initial concentration: NaN
has only substance units: false

613822
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

613847
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R PDXA DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3010
product: 581316
reactant: 581292
is: PDX5PS
name: 4- (phosphohydroxy)-l-threonine dehydrogenase
reversible: false
reactant: 581304
fast: false
is: PDXA-RXN

581316
type: SpeciesReference
stoichiometry: 1.0
species: M 1 DASH AMINO DASH PROPAN DASH 2 DASH ONE DASH 3 DASH PHOSPHATE LBRACKET C RBRACKET

581292
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

581304
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH HYDROXY DASH THREONINE LBRACKET C RBRACKET

M PHOSPHO DASH HYDROXY DASH THREONINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
is: phthr
has only substance units: false
is: C06055
boundary condition: false
name: phospho-hydroxy-threonine
initial amount: NaN
initial concentration: NaN
is: PHOSPHO-HYDROXY-THREONINE

R TYROSINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 603706
notes: GENE_ASSOCIATION: ACIAD0013
reactant: 603658
product: 603694
fast: false
is: TYROSINE--TRNA-LIGASE-RXN
product: 603682
name: tyrosine--trna ligase
is: TYRTRS
reactant: 603646
reversible: false
reactant: 603670

603706
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

603658
type: SpeciesReference
stoichiometry: 1.0
species: M TYR DASH TRNAS LBRACKET C RBRACKET

M TYR DASH TRNAS LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C00787
boundary condition: false
name: tyrosine trna
has only substance units: false
is: TYR-TRNAS
constant: false
is: trnatyr
initial concentration: NaN
initial amount: NaN

603694
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH TYR DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH TYR DASH TRNAS LBRACKET C RBRACKET
type: Species
is: tyrtrna
is: CHARGED-TYR-TRNAS
boundary condition: false
initial concentration: NaN
name: charged tyrosine trna
initial amount: NaN
constant: false
is: C02839
has only substance units: false
in compartment: 570138

603682
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

603646
type: SpeciesReference
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET

603670
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R CYTIDEAM2 DASH RXN
type: Reaction
name: cytidine deaminase
reversible: false
product: 578441
reactant: 578417
reactant: 578405
is: CYTIDEAM2-RXN
notes: GENE_ASSOCIATION: ACIAD3297 or ACIAD0204
fast: false
product: 578429
is: CYTD

578441
type: SpeciesReference
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET

578417
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

578405
type: SpeciesReference
stoichiometry: 1.0
species: M CYTIDINE LBRACKET C RBRACKET

M CYTIDINE LBRACKET C RBRACKET
type: Species
boundary condition: false
is: CYTIDINE
has only substance units: false
initial amount: NaN
is: C00475
in compartment: 570138
is: cytd
initial concentration: NaN
name: cytidine
constant: false

578429
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

M COUMARYL DASH COA LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: coucoa
is: COUMARYL-COA
has only substance units: false
name: coumaroyl-coa
is: C00223
boundary condition: false
in compartment: 570138
constant: false
initial amount: NaN

R ACETOINDEHYDROG DASH RXN
type: Reaction
product: 607964
name: diacetyl reductase
fast: false
product: 607952
reactant: 607928
reactant: 607940
notes: GENE_ASSOCIATION: ACIAD1022
reversible: true
is: ACETOINDEHYDROG-RXN

607964
type: SpeciesReference
stoichiometry: 1.0
species: M DIACETYL LBRACKET C RBRACKET

M DIACETYL LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
is: C00741
boundary condition: false
constant: false
in compartment: 570138
has only substance units: false
name: diacetyl
is: DIACETYL

607952
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

607928
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

607940
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOIN LBRACKET C RBRACKET

R DIHYDROOROTOX DASH RXN
type: Reaction
product: 596093
reactant: 596081
product: 596105
reversible: false
is: DHORD
fast: false
notes: GENE_ASSOCIATION: ACIAD1321
reactant: 596069
name: dihydroorotate oxidase
is: DIHYDROOROTOX-RXN

596093
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

596081
type: SpeciesReference
stoichiometry: 1.0
species: M DI DASH H DASH OROTATE LBRACKET C RBRACKET

596105
type: SpeciesReference
stoichiometry: 1.0
species: M OROTATE LBRACKET C RBRACKET

596069
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

R GLYCERALDEHYDE DASH DEHYDRO DASH RXN
type: Reaction
fast: false
reactant: 602611
product: 602659
reversible: true
reactant: 602635
reactant: 602623
notes: GENE_ASSOCIATION: ACIAD2018 or ACIAD2542
is: GLYCERALDEHYDE-DEHYDRO-RXN
product: 602647
name: aldehyde dehydrogenase (nad+)

602611
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCERALD LBRACKET C RBRACKET

M GLYCERALD LBRACKET C RBRACKET
type: Species
is: GLYCERALD
is: C00577
has only substance units: false
is: glyald
initial concentration: NaN
name: glyceraldehyde
constant: false
initial amount: NaN
in compartment: 570138
boundary condition: false

602659
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

602635
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

602623
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

602647
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCERATE LBRACKET C RBRACKET

http://identifiers.org/biomodels.db/MODEL1949107276#R_C7_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1689
product: 597699
product: 597686
is: RXNIM-6203
reactant: 597673
fast: false
reversible: true
name: dicarboxylate 3oxoacyl-coa thiolase (c7:0)
reactant: 597661

597699
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

597686
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET

597673
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OXOPIMELOYL DASH COA LBRACKET C RBRACKET

M 3 DASH OXOPIMELOYL DASH COA LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
initial concentration: NaN
is: 3-OXOPIMELOYL-COA
has only substance units: false
in compartment: 570138
name: 3-oxopimeloyl-coa
is: C06715
initial amount: NaN

597661
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R AIRS DASH RXN
type: Reaction
is: AIRS-RXN
product: 612868
is: PRAIS
reversible: false
name: phosphoribosylformylglycinamidine cyclo-ligase
product: 612880
notes: GENE_ASSOCIATION: ACIAD2634
fast: false
reactant: 612856
reactant: 612844
product: 612892

612868
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

612880
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

612856
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

612844
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH N DASH FORMYLGLYCINEAMIDINE LBRACKET C RBRACKET

612892
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5731
type: Reaction
product: 591476
reactant: 591463
notes: GENE_ASSOCIATION: ACIAD0118 or ACIAD2662
is: TRANS-RXNIM-5731
fast: false
reversible: false
name: transport of d-serine [extraorganism;cytosol](passive)

591476
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET C RBRACKET

M D DASH SERINE LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: d-serine
is: D-SERINE
constant: false
has only substance units: false
boundary condition: false
is: C00740
initial concentration: NaN
initial amount: NaN
is: ser-D

591463
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET E RBRACKET

R CYTDEAM DASH RXN
type: Reaction
product: 584077
notes: GENE_ASSOCIATION: ACIAD0137
is: CSND
fast: false
name: cytosine deaminase
reactant: 584064
reactant: 584051
reversible: false
product: 584089
is: CYTDEAM-RXN

584077
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

584064
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

584051
type: SpeciesReference
stoichiometry: 1.0
species: M CYTOSINE LBRACKET C RBRACKET

584089
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET

M D DASH GLUCARATE LBRACKET E RBRACKET
type: Species
boundary condition: false
is: glcr
initial amount: NaN
in compartment: 570126
name: d-glucarate
is: D-GLUCARATE
has only substance units: false
initial concentration: NaN
is: C00818
constant: false

R TRANS DASH RXN DASH 201
type: Reaction
reactant: 601852
product: 601888
reversible: false
reactant: 601864
name: transport of citrate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD1074 or ACIAD1931 or ACIAD2818
is: CITt7pp
is: TRANS-RXN-201
fast: false
product: 601876

601852
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET E RBRACKET

601888
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

601864
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

601876
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET

R TRANS DASH RXN DASH ETHANOL DASH AMINE
type: Reaction
product: 582557
product: 582545
name: transport of ethanol-amine [extraorganism;cytosol](secondary symport)
fast: false
reactant: 582521
is: TRANS-RXNIM-5926
reactant: 582533
is: ETHAt2pp
notes: GENE_ASSOCIATION: ACIAD1458
reversible: false

582557
type: SpeciesReference
stoichiometry: 1.0
species: M ETHANOL DASH AMINE LBRACKET C RBRACKET

582545
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

582521
type: SpeciesReference
stoichiometry: 1.0
species: M ETHANOL DASH AMINE LBRACKET E RBRACKET

582533
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R PSERTRANSAMPYR DASH RXN
type: Reaction
reactant: 580346
is: OHPBAT
notes: GENE_ASSOCIATION: ACIAD2647
is: PSERTRANSAMPYR-RXN
product: 580370
name: phosphohydroxythreonine transaminase
reactant: 580358
fast: false
reversible: true
product: 580382

580346
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

580370
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

580358
type: SpeciesReference
stoichiometry: 1.0
species: M 3OH DASH 4P DASH OH DASH ALPHA DASH KETOBUTYRATE LBRACKET C RBRACKET

580382
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH HYDROXY DASH THREONINE LBRACKET C RBRACKET

M CARNITINE LBRACKET C RBRACKET
type: Species
has only substance units: false
is: C00318
is: crn
is: CARNITINE
name: l-carnitine
initial amount: NaN
in compartment: 570138
constant: false
initial concentration: NaN
boundary condition: false

R LIPIDXSYNTHESIS DASH RXN
type: Reaction
reversible: false
reactant: 581074
reactant: 581062
notes: GENE_ASSOCIATION: ACIAD1922
product: 581086
is: USHD
name: udp-2,3-diacylglucosamine hydrolase
product: 581098
fast: false
is: LIPIDXSYNTHESIS-RXN

581074
type: SpeciesReference
stoichiometry: 1.0
species: M OH DASH MYRISTOYL LBRACKET C RBRACKET

M OH DASH MYRISTOYL LBRACKET C RBRACKET
type: Species
has only substance units: false
name: udp-2,3-bis(3-hydroxymyristoyl)glucosamine
initial amount: NaN
is: C04652
boundary condition: false
is: u23ga
constant: false
in compartment: 570138
is: OH-MYRISTOYL
initial concentration: NaN

581062
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

581086
type: SpeciesReference
stoichiometry: 1.0
species: M BISOHMYR DASH GLUCOSAMINYL DASH 1P LBRACKET C RBRACKET

M BISOHMYR DASH GLUCOSAMINYL DASH 1P LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
is: lipidX
has only substance units: false
is: C04824
initial concentration: NaN
in compartment: 570138
initial amount: NaN
name: 2,3-bis(3-hydroxymyristoyl)-beta-d-glucosaminyl 1-phosphate
is: BISOHMYR-GLUCOSAMINYL-1P

581098
type: SpeciesReference
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET

571328
type: Reaction
reactant: 571340
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 2-oxoglutarate

571340
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET E RBRACKET

R C12 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
name: acyl coa transferase (c12:0)
is: ACYLCOASYN-RXN
reactant: 600247
product: 600295
product: 600283
reversible: false
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 600271
fast: false
is: FACOAL120t2pp
reactant: 600259
product: 600307

600247
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET C RBRACKET

M C12 COLON 0 LBRACKET C RBRACKET
type: Species
name: dodecanoate
is: C02679
in compartment: 570138
is: ddca
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false
has only substance units: false
is: DODECANOATE

600295
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

600283
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

600271
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

600259
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

600307
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH COA LBRACKET C RBRACKET

R HYPOXANPRIBOSYLTRAN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3669
product: 592850
fast: false
product: 592862
is: HYPOXANPRIBOSYLTRAN-RXN
reactant: 592838
is: HXPRT
name: hypoxanthine phosphoribosyltransferase
reversible: false
reactant: 592826

592850
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

592862
type: SpeciesReference
stoichiometry: 1.0
species: M IMP LBRACKET C RBRACKET

592838
type: SpeciesReference
stoichiometry: 1.0
species: M HYPOXANTHINE LBRACKET C RBRACKET

592826
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

590801
type: Reaction
reactant: 590813
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of co2

590813
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET E RBRACKET

M CPDIM DASH 6115 LBRACKET E RBRACKET
type: Species
is: CPDIM-6115
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: 4-hydroxybenzylacetate

R TRANS DASH RXN DASH C6 COLON 0
type: Reaction
fast: false
reactant: 572747
name: transport of hexanoate [extraorganism;cytosol](secondary symport)
product: 572771
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
reactant: 572759
product: 572783
is: TRANS-RXNIM-5726
reversible: true

572747
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET E RBRACKET

M C6 COLON 0 LBRACKET E RBRACKET
type: Species
is: C01585
has only substance units: false
in compartment: 570126
name: hexanoate
initial amount: NaN
is: hxa
is: HEXANOATE
constant: false
boundary condition: false
initial concentration: NaN

572771
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

572759
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

572783
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET C RBRACKET

M COUMARATE LBRACKET E RBRACKET
type: Species
constant: false
initial concentration: NaN
in compartment: 570126
initial amount: NaN
name: 4-coumarate
has only substance units: false
is: C00811
is: COUMARATE
boundary condition: false

R FADSYN DASH RXN
type: Reaction
is: FMNAT
reactant: 612375
fast: false
is: FADSYN-RXN
reactant: 612387
product: 612399
reversible: true
product: 612411
name: fmn adenylyltransferase
notes: GENE_ASSOCIATION: ACIAD0023

612375
type: SpeciesReference
stoichiometry: 1.0
species: M FMN LBRACKET C RBRACKET

612387
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

612399
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

612411
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL DASH HYDROX DASH RXN
type: Reaction
reactant: 599586
is: 2-OCTAPRENYL-6-METHOXYPHENOL-HYDROX-RXN
reversible: false
fast: false
product: 599598
product: 599610
notes: GENE_ASSOCIATION: ACIAD1127
reactant: 599574
is: OMPHHX
name: 2-octaprenyl-6-methoxyphenol hydroxylase

599586
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL LBRACKET C RBRACKET

M 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL LBRACKET C RBRACKET
type: Species
is: 2omph
is: 2-OCTAPRENYL-6-METHOXYPHENOL
initial amount: NaN
boundary condition: false
constant: false
has only substance units: false
in compartment: 570138
initial concentration: NaN
name: 2-octaprenyl-6-methoxyphenol
is: C05812

599598
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHOXY DASH BENZOQUINONE LBRACKET C RBRACKET

599610
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

599574
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

M ETOH LBRACKET E RBRACKET
type: Species
initial amount: NaN
constant: false
is: etoh
boundary condition: false
is: ETOH
name: ethanol
initial concentration: NaN
in compartment: 570126
is: C00469
has only substance units: false

R CYSTATHIONINE DASH BETA DASH LYASE DASH RXN
type: Reaction
product: 605342
fast: false
reactant: 605306
is: CYSTATHIONINE-BETA-LYASE-RXN
product: 605354
notes: GENE_ASSOCIATION: ACIAD3222
product: 605330
reactant: 605318
name: cystathionine beta-lyase
is: CYSTL
reversible: true

605342
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

605306
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

605354
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET

605330
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

605318
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH CYSTATHIONINE LBRACKET C RBRACKET

R RXN0 DASH 949
type: Reaction
name: lipoate synthase
fast: false
reactant: 610834
is: RXN0-949
product: 610870
notes: GENE_ASSOCIATION: ACIAD1015 or ACIAD2275
reversible: false
product: 610882
reactant: 610846
product: 610858

610834
type: SpeciesReference
stoichiometry: 2.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

610870
type: SpeciesReference
stoichiometry: 2.0
species: M CH33ADO LBRACKET C RBRACKET

M CH33ADO LBRACKET C RBRACKET
type: Species
name: ch3ado
is: C05198
is: dad-5
boundary condition: false
initial concentration: NaN
constant: false
is: CH33ADO
initial amount: NaN
has only substance units: false
in compartment: 570138

610882
type: SpeciesReference
stoichiometry: 1.0
species: M LIPOYL DASH ACP LBRACKET C RBRACKET

M LIPOYL DASH ACP LBRACKET C RBRACKET
type: Species
is: LIPOYL-ACP
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: lipoyl-acp

610846
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH ACP LBRACKET C RBRACKET

610858
type: SpeciesReference
stoichiometry: 2.0
species: M MET LBRACKET C RBRACKET

604090
type: Reaction
reactant: 604102
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of fructose

604102
type: SpeciesReference
stoichiometry: 1.0
species: M FRU LBRACKET E RBRACKET

R GLUTATHIONE DASH REDUCT DASH NADPH DASH RXN
type: Reaction
name: glutathione reductase (nadph)
is: GTHOr
reactant: 602503
fast: false
reactant: 602527
product: 602551
is: GLUTATHIONE-REDUCT-NADPH-RXN
product: 602539
notes: GENE_ASSOCIATION:
reactant: 602515
reversible: true

602503
type: SpeciesReference
stoichiometry: 1.0
species: M OXIDIZED DASH GLUTATHIONE LBRACKET C RBRACKET

M OXIDIZED DASH GLUTATHIONE LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
is: OXIDIZED-GLUTATHIONE
name: oxidized glutathione
is: C00127
is: gthox
in compartment: 570138
initial concentration: NaN
initial amount: NaN
has only substance units: false

602527
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

602551
type: SpeciesReference
stoichiometry: 2.0
species: M GLUTATHIONE LBRACKET C RBRACKET

M GLUTATHIONE LBRACKET C RBRACKET
type: Species
has only substance units: false
name: reduced glutathione
is: GLUTATHIONE
boundary condition: false
constant: false
is: C00051
in compartment: 570138
initial amount: NaN
initial concentration: NaN
is: gthrd

602539
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

602515
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R F16ALDOLASE DASH RXN
type: Reaction
is: FBA
reversible: true
reactant: 591970
notes: GENE_ASSOCIATION: ACIAD1925
is: F16ALDOLASE-RXN
name: fructose-bisphosphate aldolase
fast: false
reactant: 591958
product: 591982

591970
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET

591958
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

591982
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET

571172
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-3-hydroxyhex-4-enoyl-coa

R DTDPDEHYDRHAMEPIM DASH RXN
type: Reaction
product: 606281
reactant: 606269
notes: GENE_ASSOCIATION: ACIAD0080
is: DTDPDEHYDRHAMEPIM-RXN
is: TDPDRE
fast: false
reversible: true
name: dtdp-4-dehydrorhamnose 3,5-epimerase

606281
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH MANNOSE LBRACKET C RBRACKET

606269
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH GLUCOSE LBRACKET C RBRACKET

M DTDP DASH DEOH DASH DEOXY DASH GLUCOSE LBRACKET C RBRACKET
type: Species
initial amount: NaN
boundary condition: false
is: dtdp4d6dg
constant: false
name: dtdp-4-dehydro-6-deoxy-d-glucose
has only substance units: false
is: DTDP-DEOH-DEOXY-GLUCOSE
initial concentration: NaN
is: C00687
in compartment: 570138

R PNPOXI DASH RXN
type: Reaction
product: 588346
is: PDX5POi
notes: GENE_ASSOCIATION: ACIAD3501
is: PNPOXI-RXN
fast: false
reversible: true
reactant: 588322
product: 588358
name: pyridoxine 5'-phosphate oxidase
reactant: 588334

588346
type: SpeciesReference
stoichiometry: 1.0
species: 570956

570956
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: PYRIDOXAL_PHOSPHATE

588322
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

588358
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

588334
type: SpeciesReference
stoichiometry: 1.0
species: M PYRIDOXINE DASH 5P LBRACKET C RBRACKET

R HOMOCYSMETB12 DASH RXN
type: Reaction
reactant: 601549
name: 5-methyltetrahydrofolate--homocysteine s-methyltransferase
notes: GENE_ASSOCIATION: ACIAD1045
reversible: false
is: HOMOCYSMETB12-RXN
reactant: 601537
product: 601574
fast: false
is: METS
product: 601562

601549
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET

601537
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH METHYL DASH THF LBRACKET C RBRACKET

601574
type: SpeciesReference
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET

601562
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET

615836
type: Reaction
reactant: 615848
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glycine

615848
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET E RBRACKET

R KDPGALDOL DASH RXN
type: Reaction
product: 580834
fast: false
notes: GENE_ASSOCIATION: ACIAD0543
product: 580822
reactant: 580810
reversible: true
name: 2-dehydro-3-deoxyphosphogluconate aldolase
is: KDPGALDOL-RXN
is: EDA

580834
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

580822
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

580810
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH 3 DASH DEOXY DASH 6 DASH P DASH GLUCONATE LBRACKET C RBRACKET

M DIHYDROSIROHYDROCHLORIN LBRACKET C RBRACKET
type: Species
boundary condition: false
is: DIHYDROSIROHYDROCHLORIN
is: C02463
initial amount: NaN
initial concentration: NaN
in compartment: 570138
has only substance units: false
constant: false
name: dihydrosirohydrochlorin
is: dscl

R PHOSMANMUT DASH RXN
type: Reaction
product: 575082
reactant: 575070
notes: GENE_ASSOCIATION: ACIAD0902 or ACIAD0104
is: PHOSMANMUT-RXN
is: PMANM
fast: false
reversible: true
name: phosphomannomutase

575082
type: SpeciesReference
stoichiometry: 1.0
species: M MANNOSE DASH 6P LBRACKET C RBRACKET

M MANNOSE DASH 6P LBRACKET C RBRACKET
type: Species
constant: false
has only substance units: false
in compartment: 570138
is: MANNOSE-6P
name: mannose-6-phosphate
initial concentration: NaN
initial amount: NaN
boundary condition: false
is: C00275
is: man6p

575070
type: SpeciesReference
stoichiometry: 1.0
species: M MANNOSE DASH 1P LBRACKET C RBRACKET

M MANNOSE DASH 1P LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: man1p
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: C03812
name: mannose-1-phosphate
is: MANNOSE-1P
has only substance units: false
constant: false

R RXNIM DASH 3878
type: Reaction
name: acetoin dehydrogenase
product: 579921
product: 579945
reactant: 579909
reactant: 579897
is: RXNIM-3878
fast: false
product: 579957
reactant: 579885
reversible: false
notes: GENE_ASSOCIATION: ( ACIAD1017 and ACIAD1018 ) and ACIAD1019 and ( ACIAD1020 or ACIAD2874 )
product: 579933

579921
type: SpeciesReference
stoichiometry: 1.0
species: M ACETALD LBRACKET C RBRACKET

579945
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

579909
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

579897
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOIN LBRACKET C RBRACKET

579957
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

579885
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

579933
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

613121
type: Reaction
reactant: 613158
notes: GENE_ASSOCIATION:
reversible: true
reactant: 613170
product: 613194
name: generic fatty acid of triacylglycerol assembly
reactant: 613145
reactant: 613133
fast: false
reactant: 613182

613158
type: SpeciesReference
stoichiometry: 0.052
species: 570775

570775
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-hexadec-7-enoate

613170
type: SpeciesReference
stoichiometry: 0.149
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

613194
type: SpeciesReference
stoichiometry: 1.0
species: 570487

613145
type: SpeciesReference
stoichiometry: 0.06
species: M C18 COLON 0 LBRACKET C RBRACKET

613133
type: SpeciesReference
stoichiometry: 0.717
species: M C16 COLON 0 LBRACKET C RBRACKET

613182
type: SpeciesReference
stoichiometry: 0.022
species: M C14 COLON 0 LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5839
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0966
reactant: 610244
name: transport of l-lysine [cytosol;extraorganism](secondary antiport)
reactant: 610256
is: TRANS-RXNIM-5839
is: LYSt2pp
product: 610268
product: 610280
fast: false
reversible: false

610244
type: SpeciesReference
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET

610256
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

610268
type: SpeciesReference
stoichiometry: 1.0
species: M LYS LBRACKET E RBRACKET

610280
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R 2TRANSKETO DASH RXN
type: Reaction
name: transketolase (erythrose-4p)
reactant: 578104
is: TKT2
notes: GENE_ASSOCIATION: ACIAD2035
reactant: 578116
product: 578128
reversible: true
is: 2TRANSKETO-RXN
product: 578140
fast: false

578104
type: SpeciesReference
stoichiometry: 1.0
species: M ERYTHROSE DASH 4P LBRACKET C RBRACKET

578116
type: SpeciesReference
stoichiometry: 1.0
species: M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

578128
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

578140
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET

R C16 COLON 0 DASH COA DASH THIOLASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
product: 614613
is: FACOAE160
fast: false
reactant: 614587
reactant: 614574
name: acyl-coa thiolase (c16:0)
is: THIOESTER-RXN
reversible: false
product: 614600

614613
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

614587
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET

614574
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

614600
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET

R 7KAPSYN DASH RXN
type: Reaction
name: 8-amino-7-oxononanoate synthase
reversible: false
is: 7KAPSYN-RXN
product: 613749
is: AOXSr
reactant: 613737
reactant: 613724
notes: GENE_ASSOCIATION: ACIAD0857
product: 613761
product: 613774
fast: false

613749
type: SpeciesReference
stoichiometry: 1.0
species: M 8 DASH AMINO DASH 7 DASH OXONONANOATE LBRACKET C RBRACKET

613737
type: SpeciesReference
stoichiometry: 1.0
species: M 6 DASH CARBOXYHEXANOYL DASH COA LBRACKET C RBRACKET

613724
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET

613761
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

613774
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

586206
type: Reaction
reactant: 586218
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of fumarate

586218
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET E RBRACKET

R THYMIDYLATESYN DASH RXN
type: Reaction
reactant: 616186
fast: false
reactant: 616198
reversible: true
notes: GENE_ASSOCIATION: ACIAD0515
name: thymidylate synthase
is: TMDS
product: 616222
is: THYMIDYLATESYN-RXN
product: 616210

616186
type: SpeciesReference
stoichiometry: 1.0
species: M DUMP LBRACKET C RBRACKET

616198
type: SpeciesReference
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET

616222
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROFOLATE LBRACKET C RBRACKET

616210
type: SpeciesReference
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET

613494
type: Reaction
reactant: 613506
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-glucarate

613506
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GLUCARATE LBRACKET E RBRACKET

591379
type: Reaction
product: 591427
reactant: 591415
reactant: 591403
reactant: 591391
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic acyl-coa of wax assembly

591427
type: SpeciesReference
stoichiometry: 1.0
species: 570535

591415
type: SpeciesReference
stoichiometry: 0.24
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET

591403
type: SpeciesReference
stoichiometry: 0.445
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET

591391
type: SpeciesReference
stoichiometry: 0.315
species: 570294

596177
type: Reaction
reactant: 596189
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of salicylacetate

596189
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET E RBRACKET

R RXN0 DASH 385
type: Reaction
reversible: false
reactant: 609231
name: dgtp pyrophosphorylase
is: RXN0-385
fast: false
reactant: 609243
notes: GENE_ASSOCIATION: ACIAD3065
product: 609267
is: NTPP1
product: 609255

609231
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

609243
type: SpeciesReference
stoichiometry: 1.0
species: M DGTP LBRACKET C RBRACKET

609267
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

609255
type: SpeciesReference
stoichiometry: 1.0
species: M DGMP LBRACKET C RBRACKET

597067
type: Reaction
reactant: 597079
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of octane

597079
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET E RBRACKET

M CPD DASH 148 LBRACKET E RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
name: octane
is: C01387
boundary condition: false
in compartment: 570126
constant: false
is: CPD-148
has only substance units: false

M ACETONE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
is: acetone
is: ACETONE
boundary condition: false
has only substance units: false
constant: false
in compartment: 570138
is: C00207
name: acetone
initial amount: NaN

R THIAZOLSYN2 DASH RXN
type: Reaction
name: thiazole phosphate synthesis
reactant: 593186
product: 593210
product: 593282
product: 593258
fast: false
is: THIAZOLSYN2-RXN
is: THIFAMP-RXN
product: 593234
reversible: true
is: THZPSN
product: 593270
is: THIFIS-RXN
product: 593222
reactant: 593174
reactant: 593162
notes: GENE_ASSOCIATION: ACIAD1308 and ACIAD1309 and ACIAD2411 and ACIAD1404
product: 593246
reactant: 593198

593186
type: SpeciesReference
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET

593210
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

593282
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

593258
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

593234
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH BENZYL DASH ALCOHOL LBRACKET C RBRACKET

593270
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

593222
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET

593174
type: SpeciesReference
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET

593162
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYXYLULOSE DASH 5P LBRACKET C RBRACKET

593246
type: SpeciesReference
stoichiometry: 1.0
species: M THZ DASH P LBRACKET C RBRACKET

593198
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R PHOSPHATIDATE DASH PHOSPHATASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: phosphatidate phosphatase
is: PHOSPHATIDATE-PHOSPHATASE-RXN
reactant: 583921
product: 583934
reactant: 583908
product: 583947

583921
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

583934
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

583908
type: SpeciesReference
stoichiometry: 1.0
species: 570450

583947
type: SpeciesReference
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET

R S DASH ADENMETSYN DASH RXN
type: Reaction
product: 581846
fast: false
is: S-ADENMETSYN-RXN
is: METAT
product: 581858
reversible: false
reactant: 581821
notes: GENE_ASSOCIATION: ACIAD2037
product: 581833
reactant: 581797
name: methionine adenosyltransferase
reactant: 581809

581846
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

581858
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

581821
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

581833
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

581797
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET

581809
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R C18 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
product: 574337
reactant: 574313
reactant: 574325
name: 3oxoacyl-acp synthase (c18:0)
reversible: false
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 574361
product: 574349
fast: false
is: 3-OXOACYL-ACP-SYNTH-RXN
is: 3OAS180

574337
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

574313
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET

574325
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

574361
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

574349
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

R MANNPISOM DASH RXN
type: Reaction
product: 583327
reactant: 583315
notes: GENE_ASSOCIATION: ACIAD0086
is: MANNPISOM-RXN
is: MAN6PI
fast: false
reversible: true
name: mannose-6-phosphate isomerase

583327
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET

583315
type: SpeciesReference
stoichiometry: 1.0
species: M MANNOSE DASH 6P LBRACKET C RBRACKET

M CHARGED DASH SER DASH TRNAS LBRACKET C RBRACKET
type: Species
is: CHARGED-SER-TRNAS
name: charged serine trna
constant: false
is: sertrna
in compartment: 570138
has only substance units: false
is: C02553
initial amount: NaN
initial concentration: NaN
boundary condition: false

R C5 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
reactant: 595044
name: acyl coa transferase (c5:0)
fast: false
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 595020
product: 595080
is: ACYLCOASYN-RXN
reactant: 595032
reversible: false
product: 595056
product: 595068

595044
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

595020
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

595080
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

595032
type: SpeciesReference
stoichiometry: 1.0
species: M C5 COLON 0 LBRACKET C RBRACKET

M C5 COLON 0 LBRACKET C RBRACKET
type: Species
name: pentanoate
constant: false
boundary condition: false
is: VALERATE
has only substance units: false
is: C00803
initial concentration: NaN
in compartment: 570138
initial amount: NaN

595056
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

595068
type: SpeciesReference
stoichiometry: 1.0
species: M C5 COLON 0 DASH COA LBRACKET C RBRACKET

R XMPXAN DASH RXN
type: Reaction
is: NTD10
product: 603368
fast: false
reversible: false
product: 603380
reactant: 603344
name: xmp nucleotidase
reactant: 603356
is: XMPXAN-RXN
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227

603368
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

603380
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHOSINE LBRACKET C RBRACKET

603344
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

603356
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

R DUDPKIN DASH RXN
type: Reaction
fast: false
reversible: true
product: 618116
is: DUDPKIN-RXN
name: dudp kinase
is: NDPK6
reactant: 618092
product: 618104
reactant: 618080
notes: GENE_ASSOCIATION: ACIAD0556

618116
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

618092
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

618104
type: SpeciesReference
stoichiometry: 1.0
species: M DUTP LBRACKET C RBRACKET

618080
type: SpeciesReference
stoichiometry: 1.0
species: M DUDP LBRACKET C RBRACKET

580677
type: Reaction
reactant: 580690
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of so3-2

580690
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET E RBRACKET

R RXN0 DASH 302
type: Reaction
fast: false
is: MECDPS
reactant: 575118
product: 575142
is: RXN0-302
reversible: false
name: 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
notes: GENE_ASSOCIATION: ACIAD1996
product: 575130

575118
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 78 LBRACKET C RBRACKET

M CPD DASH 78 LBRACKET C RBRACKET
type: Species
is: CPD-78
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-diphosphocytidyl-2-c-methylerythritol 2-phosphate

575142
type: SpeciesReference
stoichiometry: 1.0
species: M 2C DASH METH DASH D DASH ERYTHRITOL DASH CYCLODIPHOSPHATE LBRACKET C RBRACKET

M 2C DASH METH DASH D DASH ERYTHRITOL DASH CYCLODIPHOSPHATE LBRACKET C RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
name: 2-c-methyl-d-erythritol-2,4-cyclodiphosphate
is: C11453
initial amount: NaN
boundary condition: false
in compartment: 570138
is: 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE
is: 2mecdp
constant: false

575130
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

603392
type: Reaction
reactant: 603404
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of suberate

603404
type: SpeciesReference
stoichiometry: 1.0
species: M SUBERATE LBRACKET E RBRACKET

R C6 COLON 0 DASH 3OXOACP DASH REDUCTASE DASH RXN
type: Reaction
is: 3-OXOACYL-ACP-REDUCT-RXN
reversible: false
is: 3OAR60
product: 590320
fast: false
name: 3oxoacyl-acp reductase (c6:0)
notes: GENE_ASSOCIATION: ACIAD0871
reactant: 590308
reactant: 590296
product: 590332

590320
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

590308
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

590296
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

590332
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

M GUANOSINE LBRACKET E RBRACKET
type: Species
is: GUANOSINE
initial concentration: NaN
boundary condition: false
has only substance units: false
in compartment: 570126
is: gsn
is: C00387
name: guanosine
initial amount: NaN
constant: false

R PSEUDOURIDYLATE DASH SYNTHASE DASH RXN
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD0474 or ACIAD0715 or ACIAD2897 or ACIAD3307 or ACIAD0861 or ACIAD1189 or ACIAD1203 or ACIAD2377 or ACIAD2380 or ACIAD0442
fast: false
is: PSEUDOURIDYLATE-SYNTHASE-RXN
reactant: 600331
reactant: 600319
product: 600355
name: pseudouridylate synthase
product: 600343

600331
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET

600319
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET

600355
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

600343
type: SpeciesReference
stoichiometry: 1.0
species: M PSEUDOURIDINE DASH 5 DASH P LBRACKET C RBRACKET

M PSEUDOURIDINE DASH 5 DASH P LBRACKET C RBRACKET
type: Species
boundary condition: false
initial concentration: NaN
constant: false
name: pseudouridine 5'-phosphate
in compartment: 570138
has only substance units: false
initial amount: NaN
is: C01168
is: PSEUDOURIDINE-5-P

R GLUTKIN DASH RXN
type: Reaction
fast: false
name: glutamate 5-kinase
reactant: 579006
is: GLUTKIN-RXN
is: GLU5K
notes: GENE_ASSOCIATION: ACIAD2560
reversible: false
product: 579030
product: 579018
reactant: 578994

579006
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

579030
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

579018
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH GLUTAMATE DASH 5 DASH P LBRACKET C RBRACKET

578994
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

R UDP DASH NACMURALGLDAPAALIG DASH RXN
type: Reaction
product: 588526
reactant: 588514
product: 588550
product: 588538
reactant: 588490
notes: GENE_ASSOCIATION: ACIAD3364
reversible: false
name: udp-n-acetylmuramoylalanyl-d-glutamyl-2,6-diaminopimelate--d-alanyl- d-alanine ligase
reactant: 588502
is: UGMDDS
is: UDP-NACMURALGLDAPAALIG-RXN
fast: false

588526
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

588514
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

588550
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

588538
type: SpeciesReference
stoichiometry: 1.0
species: M C1 LBRACKET C RBRACKET

588490
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALA DASH D DASH ALA LBRACKET C RBRACKET

588502
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH AAGM DASH DIAMINOHEPTANEDIOATE LBRACKET C RBRACKET

R TRANS DASH RXN DASH 242A DASH BIS
type: Reaction
product: 605282
notes: GENE_ASSOCIATION: ACIAD0173
is: TRANS-RXN-242A
reactant: 605270
reversible: false
fast: false
reactant: 605258
product: 605294
name: transport of homoserine lactone [cytosol;extraorganism](secondary antiport)

605282
type: SpeciesReference
stoichiometry: 1.0
species: M HOMOSERINE DASH LACTONE LBRACKET E RBRACKET

M HOMOSERINE DASH LACTONE LBRACKET E RBRACKET
type: Species
is: HOMOSERINE-LACTONE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: homoserine lactone

605270
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

605258
type: SpeciesReference
stoichiometry: 1.0
species: M HOMOSERINE DASH LACTONE LBRACKET C RBRACKET

605294
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5876
type: Reaction
product: 615128
reactant: 615116
notes: GENE_ASSOCIATION: ACIAD0127
is: TRANS-RXNIM-5876
fast: false
reversible: true
name: transport of d-galactarate [extraorganism;cytosol](passive)

615128
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET C RBRACKET

M D DASH GALACTARATE LBRACKET C RBRACKET
type: Species
is: C00879
is: D-GALACTARATE
constant: false
boundary condition: false
is: galct-D
initial amount: NaN
in compartment: 570138
initial concentration: NaN
name: d-galactarate
has only substance units: false

615116
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET E RBRACKET

M THIAMINE DASH PYROPHOSPHATE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: C00068
initial concentration: NaN
is: THIAMINE-PYROPHOSPHATE
has only substance units: false
name: thiamine-pyrophosphate
constant: false
initial amount: NaN
is: thmpp
boundary condition: false

R C16 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 601114
product: 601102
reactant: 601077
fast: false
reactant: 601089
name: hydroxyacyl-coa dehydrogenase (c16:0)
is: OHACYL-COA-DEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
is: HACD7i
reversible: false

601114
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

M C16 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
is: 3-OXOPALMITOYL-COA
is: 3ohdcoa
name: 3-oxohexadecanoyl-coa
initial concentration: NaN
constant: false
initial amount: NaN
is: C05259
has only substance units: false
boundary condition: false
in compartment: 570138

601102
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

601077
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

601089
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R DAPASYN DASH RXN
type: Reaction
fast: false
reactant: 587061
product: 587085
reactant: 587048
notes: GENE_ASSOCIATION: ACIAD0856
is: DAPASYN-RXN
product: 587073
is: AMAOTr
reversible: true
name: adenosylmethionine--8-amino-7-oxononanoate aminotransferase

587061
type: SpeciesReference
stoichiometry: 1.0
species: M 8 DASH AMINO DASH 7 DASH OXONONANOATE LBRACKET C RBRACKET

587085
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYL DASH 4 DASH METHYLTHIO DASH 2 DASH OXOBUTANOATE LBRACKET C RBRACKET

587048
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

587073
type: SpeciesReference
stoichiometry: 1.0
species: M DIAMINONONANOATE LBRACKET C RBRACKET

M SER DASH TRNAS LBRACKET C RBRACKET
type: Species
is: C01650
is: trnaser
boundary condition: false
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN
is: SER-TRNAS
initial amount: NaN
name: serine trna

R RIB5PISOM DASH RXN
type: Reaction
product: 595708
reactant: 595696
notes: GENE_ASSOCIATION: ACIAD1358
is: RIB5PISOM-RXN
is: RPI
fast: false
reversible: true
name: ribose 5-phosphate epimerase

595708
type: SpeciesReference
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET

M RIBULOSE DASH 5P LBRACKET C RBRACKET
type: Species
is: ru5p-D
name: ribulose-5-phosphate
is: RIBULOSE-5P
has only substance units: false
is: C00199
constant: false
initial amount: NaN
boundary condition: false
initial concentration: NaN
in compartment: 570138

595696
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET

R BADH DASH RXN
type: Reaction
is: BADH-RXN
reactant: 585193
is: BETALDHx
reactant: 585169
reversible: true
name: betaine-aldehyde dehydrogenase
fast: false
product: 585217
product: 585205
notes: GENE_ASSOCIATION: ACIAD1009
reactant: 585181

585193
type: SpeciesReference
stoichiometry: 1.0
species: 570511

585169
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

585217
type: SpeciesReference
stoichiometry: 1.0
species: M BETAINE LBRACKET C RBRACKET

585205
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

585181
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R CDPKIN DASH RXN
type: Reaction
product: 577840
reactant: 577828
is: NDPK3
reactant: 577816
is: CDPKIN-RXN
fast: false
reversible: true
product: 577852
name: cdp kinase
notes: GENE_ASSOCIATION: ACIAD0556

577840
type: SpeciesReference
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET

577828
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

577816
type: SpeciesReference
stoichiometry: 1.0
species: M CDP LBRACKET C RBRACKET

577852
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET
type: Species
in compartment: 570138
is: 3-OXOADIPATE-ENOL-LACTONE
boundary condition: false
is: C03586
is: 5odhf2a
constant: false
has only substance units: false
initial amount: NaN
initial concentration: NaN
name: 3-oxoadipate-enol-lactone

R QUINOLINATE DASH SYNTHA DASH RXN
type: Reaction
product: 596863
is: QULNS
reactant: 596815
reversible: false
product: 596839
fast: false
name: quinolinate synthetase a
reactant: 596827
is: QUINOLINATE-SYNTHA-RXN
notes: GENE_ASSOCIATION: ACIAD0651
product: 596851

596863
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

596815
type: SpeciesReference
stoichiometry: 1.0
species: M IMINOASPARTATE LBRACKET C RBRACKET

596839
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

596827
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET

596851
type: SpeciesReference
stoichiometry: 1.0
species: M QUINOLINATE LBRACKET C RBRACKET

R 2 DASH NITROPROPANE DASH DIOXYGENASE DASH RXN
type: Reaction
fast: false
product: 606329
name: 2-nitropropane dioxygenase
reactant: 606293
reversible: false
product: 606317
reactant: 606305
notes: GENE_ASSOCIATION: ACIAD1570
is: 2-NITROPROPANE-DIOXYGENASE-RXN

606329
type: SpeciesReference
stoichiometry: 1.0
species: M ACETONE LBRACKET C RBRACKET

606293
type: SpeciesReference
stoichiometry: 0.5
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

606317
type: SpeciesReference
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET

606305
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 244 LBRACKET C RBRACKET

M CPD DASH 244 LBRACKET C RBRACKET
type: Species
in compartment: 570138
name: 2-nitropropane
is: C02116
boundary condition: false
constant: false
initial amount: NaN
has only substance units: false
initial concentration: NaN
is: CPD-244

603802
type: Reaction
reactant: 603814
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of tetradecanoate

603814
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET E RBRACKET

M C14 COLON 0 LBRACKET E RBRACKET
type: Species
initial concentration: NaN
constant: false
initial amount: NaN
name: tetradecanoate
is: C06424
in compartment: 570126
has only substance units: false
is: ttdca
boundary condition: false

R GLYCEROL DASH 3 DASH P DASH ACYLTRANSFER DASH TAG DASH RXN
type: Reaction
reactant: 587336
notes: GENE_ASSOCIATION: ACIAD3232
reactant: 587348
product: 587360
product: 587373
name: glycerol-3-phosphate acyltransferase
reversible: false
fast: false
is: GLYCEROL-3-P-ACYLTRANSFER-RXN

587336
type: SpeciesReference
stoichiometry: 1.0
species: 570198

587348
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET

587360
type: SpeciesReference
stoichiometry: 1.0
species: 570258

587373
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

M C18 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
is: 3oodcoa
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-oxooctadecanoyl-coa

R GLUTARYL DASH COA DASH DEHYDROG DASH RXN
type: Reaction
reversible: false
product: 593102
fast: false
reactant: 593078
reactant: 593090
product: 593114
name: glutaryl-coa dehydrogenase
notes: GENE_ASSOCIATION: ACIAD1693
is: GLUTARYL-COA-DEHYDROG-RXN

593102
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

593078
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

593090
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET

593114
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTACONYL DASH COA LBRACKET C RBRACKET

R N DASH ACETYLGLUTPREDUCT DASH RXN
type: Reaction
reactant: 586410
product: 586422
reversible: true
product: 586446
notes: GENE_ASSOCIATION: ACIAD1360
name: n-acetyl-gamma-glutamyl-phosphate reductase
product: 586434
fast: false
reactant: 586398
is: N-ACETYLGLUTPREDUCT-RXN
is: AGPR

586410
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

586422
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

586446
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

586434
type: SpeciesReference
stoichiometry: 1.0
species: 571028

586398
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ACETYL DASH GLUTAMYL DASH P LBRACKET C RBRACKET

R TRYPSYN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0642 and ACIAD0636
is: TRYPSYN-RXN
is: TRPS1
product: 615368
reactant: 615344
reactant: 615332
product: 615380
reversible: false
product: 615356
name: tryptophan synthase
fast: false

615368
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

615344
type: SpeciesReference
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET

615332
type: SpeciesReference
stoichiometry: 1.0
species: M INDOLE DASH 3 DASH GLYCEROL DASH P LBRACKET C RBRACKET

615380
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

615356
type: SpeciesReference
stoichiometry: 1.0
species: M TRP LBRACKET C RBRACKET

M CHARGED DASH CYS DASH TRNAS LBRACKET C RBRACKET
type: Species
has only substance units: false
in compartment: 570138
is: C03125
initial amount: NaN
is: CHARGED-CYS-TRNAS
constant: false
boundary condition: false
is: cystrna
initial concentration: NaN
name: charged cysteine trna

M HISTIDINOL LBRACKET C RBRACKET
type: Species
constant: false
is: C00860
in compartment: 570138
boundary condition: false
is: histd
initial concentration: NaN
initial amount: NaN
name: histidinol
has only substance units: false
is: HISTIDINOL

R DHHB DASH METHYLTRANSFER DASH RXN
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD0044
is: DMQMT
reactant: 572158
name: 3-demethylubiquinone-9 3-o-methyltransferase
reactant: 572170
product: 572194
product: 572182
is: DHHB-METHYLTRANSFER-RXN
reversible: false

572158
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

572170
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH OH DASH METHOXY DASH BENZQ LBRACKET C RBRACKET

M OCTAPRENYL DASH METHYL DASH OH DASH METHOXY DASH BENZQ LBRACKET C RBRACKET
type: Species
is: OCTAPRENYL-METHYL-OH-METHOXY-BENZQ
constant: false
has only substance units: false
in compartment: 570138
boundary condition: false
initial amount: NaN
initial concentration: NaN
is: C05815
name: 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone

572194
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET

572182
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

R BHBDCLOS DASH RXN
type: Reaction
product: 606822
reversible: false
product: 606834
reactant: 606810
is: BHBDCLOS-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
name: 3-hydroxyacyl-coa dehydrogenase
is: HACD1i
reactant: 606798

606822
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

606834
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOACETYL DASH COA LBRACKET C RBRACKET

M ACETOACETYL DASH COA LBRACKET C RBRACKET
type: Species
is: ACETOACETYL-COA
is: aacoa
initial amount: NaN
constant: false
in compartment: 570138
name: acetoacetyl-coa
initial concentration: NaN
is: C00332
has only substance units: false
boundary condition: false

606810
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

606798
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 650 LBRACKET C RBRACKET

579223
type: Reaction
product: 579271
reactant: 579259
reactant: 579247
reactant: 579235
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic phospholipid assembly

579271
type: SpeciesReference
stoichiometry: 0.8359
species: 570354

579259
type: SpeciesReference
stoichiometry: 0.149
species: M CARDIOLIPIN LBRACKET C RBRACKET

579247
type: SpeciesReference
stoichiometry: 0.116
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET

579235
type: SpeciesReference
stoichiometry: 0.735
species: M L DASH 1 DASH PHOSPHATIDYL DASH ETHANOLAMINE LBRACKET C RBRACKET

M L DASH 1 DASH PHOSPHATIDYL DASH ETHANOLAMINE LBRACKET C RBRACKET
type: Species
name: generic l-1-phosphatidyl-ethanolamine
initial amount: NaN
initial concentration: NaN
constant: false
is: C00350
is: L-1-PHOSPHATIDYL-ETHANOLAMINE
boundary condition: false
in compartment: 570138
has only substance units: false

R N DASH ACETYLTRANSFER DASH RXN
type: Reaction
product: 595273
name: amino-acid n-acetyltransferase
notes: GENE_ASSOCIATION: ACIAD0650 or ACIAD0039
product: 595285
is: ACGS
fast: false
reversible: true
reactant: 595248
is: N-ACETYLTRANSFER-RXN
reactant: 595261

595273
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH GLU LBRACKET C RBRACKET

595285
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

595248
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

595261
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

R 2 PERIOD 3 PERIOD 1 PERIOD 155 DASH RXN
type: Reaction
name: 3oxoacyl-coa thiolase (c16:0)
reactant: 581749
reversible: true
reactant: 581761
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
product: 581785
is: 2.3.1.155-RXN
is: KAT7
product: 581773
fast: false

581749
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

581761
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

581785
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

581773
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET

M ALA DASH TRNAS LBRACKET C RBRACKET
type: Species
in compartment: 570138
initial concentration: NaN
boundary condition: false
name: alanine trna
constant: false
is: trnaala
initial amount: NaN
is: C01635
has only substance units: false
is: ALA-TRNAS

604884
type: Reaction
reactant: 604896
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of guanosine

604896
type: SpeciesReference
stoichiometry: 1.0
species: M GUANOSINE LBRACKET E RBRACKET

R TRANS DASH RXN DASH MAL
type: Reaction
is: TRANS-RXN-121A
reversible: false
reactant: 588214
fast: false
product: 588250
is: MALt2 2pp
product: 588238
notes: GENE_ASSOCIATION: ACIAD0024
name: transport of malate [extraorganism;cytosol](secondary symport) TDT family
reactant: 588226

588214
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET E RBRACKET

588250
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

588238
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

588226
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R ALDOXIME DASH DEHYDRAT DASH RXN
type: Reaction
product: 609400
product: 609388
reactant: 609376
notes: GENE_ASSOCIATION: ACIAD1620
is: RXNIM-6223
fast: false
reversible: false
name: propionaldoxime aldoxime dehydratase

609400
type: SpeciesReference
stoichiometry: 1.0
species: M PROPANENITRILE LBRACKET C RBRACKET

609388
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

609376
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONALDOXIME LBRACKET C RBRACKET

R GLUTATHIONE DASH SYN DASH RXN
type: Reaction
reversible: false
reactant: 597308
name: glutathione synthase
product: 597356
notes: GENE_ASSOCIATION: ACIAD3518
product: 597344
product: 597368
is: GTHS
is: GLUTATHIONE-SYN-RXN
reactant: 597332
fast: false
reactant: 597320

597308
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

597356
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTATHIONE LBRACKET C RBRACKET

597344
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

597368
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

597332
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

597320
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH GAMMA DASH GLUTAMYLCYSTEINE LBRACKET C RBRACKET

R HISTOLDEHYD DASH RXN
type: Reaction
reversible: false
reactant: 590077
name: histidinol dehydrogenase
product: 590089
is: HISTD
fast: false
is: HISTOLDEHYD-RXN
notes: GENE_ASSOCIATION: ACIAD0663
reactant: 590065
product: 590101

590077
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

590089
type: SpeciesReference
stoichiometry: 1.0
species: M HISTIDINAL LBRACKET C RBRACKET

590065
type: SpeciesReference
stoichiometry: 1.0
species: M HISTIDINOL LBRACKET C RBRACKET

590101
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R C8 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
is: ENOYL-COA-HYDRAT-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
reactant: 590113
is: ECOAH3
name: enoyl-coa hydratase (c8:0)
reactant: 590126
fast: false
product: 590138

590113
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C8 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET
type: Species
boundary condition: false
initial concentration: NaN
is: C05276
constant: false
is: oc2coa
in compartment: 570138
initial amount: NaN
name: trans-octa-2-enoyl-coa
has only substance units: false

590126
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

590138
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

R TRANS DASH RXN DASH 132
type: Reaction
name: transport of uracil [extraorganism;cytosol](secondary symport)
is: URAt2pp
reactant: 587397
notes: GENE_ASSOCIATION: ACIAD3628 or ACIAD0031 or ACIAD0136 or ACIAD0702 or ACIAD0762 or ACIAD1243
product: 587421
product: 587408
is: TRANS-RXN-132
fast: false
reversible: false
reactant: 587385

587397
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

587421
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET C RBRACKET

587408
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

587385
type: SpeciesReference
stoichiometry: 1.0
species: M URACIL LBRACKET E RBRACKET

R C6 COLON 0 DASH CARBOXY DASH COATRANSFERASE DASH RXN
type: Reaction
name: dicarboxylate acyl coa transferase (c6:0)
is: RXNIM-6198
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696
fast: false
product: 616005
reversible: false
reactant: 615968
product: 615981
reactant: 615944
product: 615993
reactant: 615956

616005
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

615968
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

615981
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET

M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET
type: Species
is: C14143
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 5-carboxypentanoyl-coa

615944
type: SpeciesReference
stoichiometry: 1.0
species: M ADIPATE LBRACKET C RBRACKET

615993
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

615956
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

M C16 COLON 0 LBRACKET E RBRACKET
type: Species
is: hdca
is: C00249
name: hexadecanoate
boundary condition: false
has only substance units: false
is: PALMITATE
initial amount: NaN
initial concentration: NaN
constant: false
in compartment: 570126

616162
type: Reaction
reactant: 616174
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of homoserine

616174
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET E RBRACKET

M C10 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
name: 3-oxodecanoyl-coa
has only substance units: false
is: C05265
boundary condition: false
initial amount: NaN
initial concentration: NaN
constant: false
is: 3odcoa
in compartment: 570138

R 3 DASH HYDROXYISOBUTYRATE DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 609956
product: 609968
fast: false
notes: GENE_ASSOCIATION: ACIAD0032 or ACIAD2316 or ACIAD1605 or ACIAD3074
product: 609980
is: 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN
name: 3-hydroxyisobutyrate dehydrogenase
reversible: true
reactant: 609944

609956
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH HYDROXY DASH ISOBUTYRATE LBRACKET C RBRACKET

M 3 DASH HYDROXY DASH ISOBUTYRATE LBRACKET C RBRACKET
type: Species
is: 3-HYDROXY-ISOBUTYRATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxy-isobutyrate

609968
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

609980
type: SpeciesReference
stoichiometry: 1.0
species: M CH3 DASH MALONATE DASH S DASH ALD LBRACKET C RBRACKET

609944
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R RXN0 DASH 1461
type: Reaction
fast: false
reactant: 607038
is: CPPPGO
is: RXN0-1461
product: 607074
product: 607062
reactant: 607026
reversible: false
product: 607050
name: coproporphyrinogen oxidase
notes: GENE_ASSOCIATION: ACIAD3250

607038
type: SpeciesReference
stoichiometry: 1.0
species: 571124

571124
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: COPROPORPHYRINOGEN_III

607074
type: SpeciesReference
stoichiometry: 1.0
species: M PROTOPORPHYRINOGEN LBRACKET C RBRACKET

607062
type: SpeciesReference
stoichiometry: 2.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

607026
type: SpeciesReference
stoichiometry: 2.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

607050
type: SpeciesReference
stoichiometry: 2.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

588454
type: Reaction
product: 588478
reactant: 588466
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of chlorogenate [extraorganism;periplasm](passive)

588478
type: SpeciesReference
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET P RBRACKET

M CHLOROGENATE LBRACKET P RBRACKET
type: Species
is: CHLOROGENATE
initial amount: NaN
has only substance units: false
in compartment: 570114
boundary condition: false
name: chlorogenate
is: C00852
initial concentration: NaN
constant: false

588466
type: SpeciesReference
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET E RBRACKET

R DARAB5PISOM DASH RXN
type: Reaction
product: 588034
reactant: 588022
notes: GENE_ASSOCIATION: ACIAD1482
is: DARAB5PISOM-RXN
is: A5PISO
fast: false
reversible: true
name: arabinose-5-phosphate isomerase

588034
type: SpeciesReference
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET

588022
type: SpeciesReference
stoichiometry: 1.0
species: M ARABINOSE DASH 5P LBRACKET C RBRACKET

M CPD DASH 77 LBRACKET C RBRACKET
type: Species
is: CPD-77
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 4-diphosphocytidyl-2-c-methylerythritol

R TRANS DASH RXN DASH 3 COMMA 4 DASH DIHYDROXYBENZOATE DASH PERIP
type: Reaction
product: 596947
reactant: 596935
notes: GENE_ASSOCIATION: ACIAD1709 or ACIAD0982
is: TRANS-RXNIM-5914
fast: false
reversible: true
name: 3,4-dihydroxybenzoate periplasm-cytoplasm transport

596947
type: SpeciesReference
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET

596935
type: SpeciesReference
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET P RBRACKET

R ACETYLORNTRANSAM DASH RXN
type: Reaction
reactant: 580978
fast: false
is: ACETYLORNTRANSAM-RXN
is: ACOTA
reversible: true
product: 581014
name: acetylornithine aminotransferase
notes: GENE_ASSOCIATION: ACIAD1231 or ACIAD1284
product: 581002
reactant: 580990

580978
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

581014
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET

581002
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

580990
type: SpeciesReference
stoichiometry: 1.0
species: 571028

R GPPSYN DASH RXN
type: Reaction
product: 588995
product: 589007
name: dimethylallyltransferase
fast: false
reactant: 588983
reversible: true
reactant: 588971
is: GPPSYN-RXN
notes: GENE_ASSOCIATION: ACIAD2968 or ACIAD2940 or ACIAD1374
is: DMATT

588995
type: SpeciesReference
stoichiometry: 1.0
species: M GERANYL DASH PP LBRACKET C RBRACKET

589007
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

588983
type: SpeciesReference
stoichiometry: 1.0
species: M DI DASH CH3 DASH ALLYL DASH PPI LBRACKET C RBRACKET

588971
type: SpeciesReference
stoichiometry: 1.0
species: M DELTA LPAREN 3 RPAREN DASH ISOPENTENYL DASH PP LBRACKET C RBRACKET

M CHOLINE LBRACKET C RBRACKET
type: Species
is: C00114
is: chol
initial concentration: NaN
boundary condition: false
in compartment: 570138
initial amount: NaN
name: choline
has only substance units: false
constant: false
is: CHOLINE

R MALONYL DASH ACPDECARBOX DASH RXN
type: Reaction
name: malonyl-acp decarboxylase
is: MACPD
product: 573037
fast: false
notes: GENE_ASSOCIATION: ACIAD0879
reversible: false
product: 573049
is: MALONYL-ACPDECARBOX-RXN
reactant: 573025

573037
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

573049
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH ACP LBRACKET C RBRACKET

573025
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

R GALACTARDEHYDRA DASH RXN
type: Reaction
product: 571690
is: GALCTD
reactant: 571678
reversible: false
fast: false
name: galactarate dehydratase
is: GALACTARDEHYDRA-RXN
product: 571702
notes: GENE_ASSOCIATION: ACIAD0126

571690
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET

571678
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GALACTARATE LBRACKET C RBRACKET

571702
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R LEUCINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reactant: 604440
product: 604476
reversible: false
name: leucine--trna ligase
reactant: 604428
product: 604464
is: LEUTRS
reactant: 604416
fast: false
product: 604452
is: LEUCINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD3106

604440
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

604476
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH LEU DASH TRNAS LBRACKET C RBRACKET

604428
type: SpeciesReference
stoichiometry: 1.0
species: M LEU LBRACKET C RBRACKET

M LEU LBRACKET C RBRACKET
type: Species
is: C00123
in compartment: 570138
boundary condition: false
constant: false
is: LEU
initial amount: NaN
initial concentration: NaN
name: l-leucine
has only substance units: false
is: leu-L

604464
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

604416
type: SpeciesReference
stoichiometry: 1.0
species: M LEU DASH TRNAS LBRACKET C RBRACKET

M LEU DASH TRNAS LBRACKET C RBRACKET
type: Species
is: trnaleu
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
in compartment: 570138
name: leucine-trna
is: LEU-TRNAS
initial amount: NaN
is: C01645

604452
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R C16 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
name: 3oxoacyl-acp synthase (c16:0)
reactant: 606750
fast: false
reactant: 606738
is: 3-OXOACYL-ACP-SYNTH-RXN
reversible: false
product: 606786
is: 3OAS160
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 606774
product: 606762

606750
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

606738
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH ACP LBRACKET C RBRACKET

606786
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

606774
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

606762
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

R 1 PERIOD 2 PERIOD 1 PERIOD 67 DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1725
product: 617622
reactant: 617598
is: 1.2.1.67-RXN
name: vanillin dehydrogenase
fast: false
reactant: 617574
product: 617610
reactant: 617586
reversible: true

617622
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

617598
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

617574
type: SpeciesReference
stoichiometry: 1.0
species: M VANILLIN LBRACKET C RBRACKET

617610
type: SpeciesReference
stoichiometry: 1.0
species: M VANILLATE LBRACKET C RBRACKET

617586
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R 3 PERIOD 6 PERIOD 1 PERIOD 41 DASH RXN
type: Reaction
is: 3.6.1.41-RXN
is: AP4AH
reactant: 611905
notes: GENE_ASSOCIATION: ACIAD3008
reactant: 611893
product: 611918
fast: false
name: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
reversible: false

611905
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

611893
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSYL DASH P4 LBRACKET C RBRACKET

M ADENOSYL DASH P4 LBRACKET C RBRACKET
type: Species
has only substance units: false
is: ap4a
constant: false
boundary condition: false
initial concentration: NaN
is: ADENOSYL-P4
in compartment: 570138
initial amount: NaN
is: C01260
name: p(1),p(4)-bis(5'-adenosyl)tetraphosphate

611918
type: SpeciesReference
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET

R C16 COLON 1 LPAREN C7 RPAREN DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
name: acyl-coa dehydrogenase (c16:1(c7))
reversible: false
reactant: 617381
fast: false
product: 617417
reactant: 617393
product: 617405
is: ACYLCOADEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566

617381
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

617417
type: SpeciesReference
stoichiometry: 1.0
species: 570787

617393
type: SpeciesReference
stoichiometry: 1.0
species: 570294

617405
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

R 4 PERIOD 1 PERIOD 1 PERIOD 32 DASH RXN
type: Reaction
product: 571426
name: phosphoenolpyruvate carboxykinase (gtp)
notes: GENE_ASSOCIATION: ACIAD2842
is: PPCK
is: 4.1.1.32-RXN
reversible: false
product: 571438
product: 571450
reactant: 571414
fast: false
reactant: 571402

571426
type: SpeciesReference
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET

571438
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

571450
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

571414
type: SpeciesReference
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET

571402
type: SpeciesReference
stoichiometry: 1.0
species: 570883

R GLUTATHIONE DASH PEROXIDASE DASH RXN
type: Reaction
reactant: 572855
reversible: false
reactant: 572868
notes: GENE_ASSOCIATION: ACIAD0193 or ACIAD2085
name: glutathione peroxidase
is: GLUTATHIONE-PEROXIDASE-RXN
is: GTHP
product: 572880
fast: false
product: 572892

572855
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

572868
type: SpeciesReference
stoichiometry: 2.0
species: M GLUTATHIONE LBRACKET C RBRACKET

572880
type: SpeciesReference
stoichiometry: 1.0
species: M OXIDIZED DASH GLUTATHIONE LBRACKET C RBRACKET

572892
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

R TRANS DASH RXN DASH FORMATE
type: Reaction
reactant: 604054
is: RXNIM-6216
reactant: 604042
product: 604078
name: transport of formate [extraorganism;cytosol](secondary symport)
product: 604066
fast: false
reversible: true
is: FORt2pp
notes: GENE_ASSOCIATION: ACIAD2100

604054
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET E RBRACKET

604042
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

604078
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

604066
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET

R DALADALALIG DASH RXN
type: Reaction
product: 606233
name: d-alanine--d-alanine ligase
reactant: 606209
product: 606257
product: 606245
reversible: true
is: ALAALAr
is: DALADALALIG-RXN
fast: false
reactant: 606221
notes: GENE_ASSOCIATION: ACIAD3515

606233
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

606209
type: SpeciesReference
stoichiometry: 2.0
species: M D DASH ALANINE LBRACKET C RBRACKET

606257
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

606245
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALA DASH D DASH ALA LBRACKET C RBRACKET

606221
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

M 2 DASH OCTAPRENYLPHENOL LBRACKET C RBRACKET
type: Species
constant: false
is: C05810
initial concentration: NaN
has only substance units: false
name: 2-octaprenylphenol
is: 2oph
in compartment: 570138
boundary condition: false
initial amount: NaN
is: 2-OCTAPRENYLPHENOL

R NAG1P DASH URIDYLTRANS DASH RXN
type: Reaction
name: udp-n-acetylglucosamine pyrophosphorylase
reversible: false
fast: false
reactant: 575493
product: 575517
is: UAGDP
is: NAG1P-URIDYLTRANS-RXN
product: 575529
reactant: 575505
notes: GENE_ASSOCIATION: ACIAD3575

575493
type: SpeciesReference
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET

575517
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH N DASH ACETYL DASH D DASH GLUCOSAMINE LBRACKET C RBRACKET

575529
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

575505
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ACETYL DASH D DASH GLUCOSAMINE DASH 1 DASH P LBRACKET C RBRACKET

R 5 PERIOD 5 PERIOD 1 PERIOD 2 DASH RXN
type: Reaction
product: 590958
reactant: 590946
notes: GENE_ASSOCIATION: ACIAD1707
is: 5.5.1.2-RXN
fast: false
reversible: true
name: 3-carboxy-cis,cis-muconate cycloisomerase

590958
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 245 LBRACKET C RBRACKET

M CPD DASH 245 LBRACKET C RBRACKET
type: Species
is: C01163
initial concentration: NaN
has only substance units: false
constant: false
boundary condition: false
initial amount: NaN
is: CPD-245
in compartment: 570138
name: 3-carboxy-cis,cis-muconate

590946
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 761 LBRACKET C RBRACKET

M CPD DASH 761 LBRACKET C RBRACKET
type: Species
has only substance units: false
name: 2-carboxy-2,5-dihydro-5-oxofuran-2-acetate
constant: false
in compartment: 570138
is: C01278
is: CPD-761
initial concentration: NaN
is: 2c25dho
initial amount: NaN
boundary condition: false

M ASPARTYL DASH TRNAASN LBRACKET C RBRACKET
type: Species
is: ASPARTYL-TRNAASN
name: l-aspartyl-trna(asn)
constant: false
is: C06113
in compartment: 570138
initial concentration: NaN
initial amount: NaN
boundary condition: false
has only substance units: false

573915
type: Reaction
reactant: 573927
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-asparagine

573927
type: SpeciesReference
stoichiometry: 1.0
species: M ASN LBRACKET E RBRACKET

M ASN LBRACKET E RBRACKET
type: Species
in compartment: 570126
is: C00152
constant: false
is: ASN
is: asn-L
boundary condition: false
name: l-asparagine
has only substance units: false
initial amount: NaN
initial concentration: NaN

R THIOREDOXIN DASH REDUCT DASH NADPH DASH RXN
type: Reaction
reactant: 594563
product: 594575
notes: GENE_ASSOCIATION: ACIAD0890
fast: false
name: thioredoxin reductase (nadph)
product: 594587
reactant: 594551
reversible: true
is: THIOREDOXIN-REDUCT-NADPH-RXN
is: TRDR

594563
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

594575
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

594587
type: SpeciesReference
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET
type: Species
is: trdrd
name: reduced thioredoxin
initial concentration: NaN
initial amount: NaN
is: RED-THIOREDOXIN-MONOMER
is: C00342
boundary condition: false
constant: false
has only substance units: false
in compartment: 570138

594551
type: SpeciesReference
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

614051
type: Reaction
reactant: 614063
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethane sulfonate

614063
type: SpeciesReference
stoichiometry: 1.0
species: 570715

R 3 DASH OXOADIPATE DASH ENOL DASH LACTONASE DASH RXN
type: Reaction
product: 595865
reactant: 595853
reactant: 595841
notes: GENE_ASSOCIATION: ACIAD1708 or ACIAD1451
is: 3-OXOADIPATE-ENOL-LACTONASE-RXN
fast: false
reversible: true
name: 3-oxoadipate enol-lactonase

595865
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETO DASH ADIPATE LBRACKET C RBRACKET

M 3 DASH KETO DASH ADIPATE LBRACKET C RBRACKET
type: Species
initial amount: NaN
constant: false
initial concentration: NaN
has only substance units: false
name: 3-ketoadipate
in compartment: 570138
boundary condition: false
is: 3-KETO-ADIPATE
is: C00846

595853
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

595841
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET

R LIPIDADISACCHARIDESYNTH DASH RXN
type: Reaction
is: LPADSS
reactant: 578766
reactant: 578754
is: LIPIDADISACCHARIDESYNTH-RXN
product: 578790
notes: GENE_ASSOCIATION: ACIAD2324
name: lipid-a-disaccharide synthase
fast: false
product: 578778
reversible: false

578766
type: SpeciesReference
stoichiometry: 1.0
species: M OH DASH MYRISTOYL LBRACKET C RBRACKET

578754
type: SpeciesReference
stoichiometry: 1.0
species: M BISOHMYR DASH GLUCOSAMINYL DASH 1P LBRACKET C RBRACKET

578790
type: SpeciesReference
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET

578778
type: SpeciesReference
stoichiometry: 1.0
species: M BISOHMYR DASH GLC LBRACKET C RBRACKET

M BISOHMYR DASH GLC LBRACKET C RBRACKET
type: Species
in compartment: 570138
has only substance units: false
name: lipid a disaccharide
is: lipidAds
is: C04932
constant: false
is: BISOHMYR-GLC
boundary condition: false
initial amount: NaN
initial concentration: NaN

M XANTHINE LBRACKET E RBRACKET
type: Species
in compartment: 570126
has only substance units: false
constant: false
initial amount: NaN
is: xan
name: xanthine
is: C00385
is: XANTHINE
boundary condition: false
initial concentration: NaN

R PROTOCATECHUATE DASH 3 COMMA 4 DASH DIOXYGENASE DASH RXN
type: Reaction
product: 581616
reactant: 581604
reactant: 581592
notes: GENE_ASSOCIATION: ACIAD1711 and ACIAD1712
is: |PROTOCATECHUATE-3,4-DIOXYGENASE-RXN|
fast: false
reversible: false
name: protocatechuate 3,4-dioxygenase

581616
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 245 LBRACKET C RBRACKET

581604
type: SpeciesReference
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET

581592
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

615728
type: Reaction
product: 615776
product: 615764
reactant: 615752
reactant: 615740
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: acyl-acp hydrolase (c18:0)

615776
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

615764
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET

615752
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

615740
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET

592753
type: Reaction
reactant: 592765
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-phenylalanine

592765
type: SpeciesReference
stoichiometry: 1.0
species: M PHE LBRACKET E RBRACKET

577286
type: Reaction
reactant: 577298
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cytosine

577298
type: SpeciesReference
stoichiometry: 1.0
species: M CYTOSINE LBRACKET E RBRACKET

R DSERDEAM DASH RXN
type: Reaction
name: d-serine dehydratase
product: 601234
is: DSERDEAM-RXN
reactant: 601222
reversible: false
notes: GENE_ASSOCIATION: ACIAD1048
is: SERD D
fast: false
product: 601246

601234
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

601222
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH SERINE LBRACKET C RBRACKET

601246
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

R RXNIM DASH 6173
type: Reaction
product: 600740
product: 600728
reactant: 600716
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6173
fast: false
reversible: true
name: 4-hydroxyphenyl-beta-hydroxypropionyl-coa lyase

600740
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

600728
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZALDEHYDE LBRACKET C RBRACKET

600716
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6098 LBRACKET C RBRACKET

R UROGENDECARBOX DASH RXN
type: Reaction
reactant: 609003
is: UROGENDECARBOX-RXN
is: UPPDC1
reversible: false
product: 609015
name: uroporphyrinogen decarboxylase
fast: false
product: 609027
notes: GENE_ASSOCIATION: ACIAD2474

609003
type: SpeciesReference
stoichiometry: 1.0
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET

609015
type: SpeciesReference
stoichiometry: 1.0
species: 571124

609027
type: SpeciesReference
stoichiometry: 4.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R 3 DASH OCTAPRENYL DASH 4 DASH OHBENZOATE DASH DECARBOX DASH RXN
type: Reaction
fast: false
name: octaprenyl-hydroxybenzoate decarboxylase
product: 578970
reactant: 578958
is: OPHBDC
product: 578982
is: 3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN
reversible: false
notes: GENE_ASSOCIATION:

578970
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

578958
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OCTAPRENYL DASH 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET

M 3 DASH OCTAPRENYL DASH 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET
type: Species
has only substance units: false
is: 3ophb
initial amount: NaN
in compartment: 570138
is: C05809
boundary condition: false
is: 3-OCTAPRENYL-4-HYDROXYBENZOATE
name: 3-octaprenyl-4-hydroxybenzoate
initial concentration: NaN
constant: false

578982
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYLPHENOL LBRACKET C RBRACKET

607158
type: Reaction
reactant: 607170
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of dodecanoate

607170
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET E RBRACKET

600752
type: Reaction
reactant: 600764
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of gluconate

600764
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET E RBRACKET

571184
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: cis-hexadec-7-enoate

R L DASH ASPARTATE DASH OXIDASE DASH RXN
type: Reaction
reversible: false
product: 584161
product: 584149
is: ASPO6
product: 584137
fast: false
is: L-ASPARTATE-OXIDASE-RXN
reactant: 584101
name: l-aspartate oxidase (producing oxaloacetate)
reactant: 584113
notes: GENE_ASSOCIATION: ACIAD2587
reactant: 584125

584161
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

584149
type: SpeciesReference
stoichiometry: 1.0
species: 570883

584137
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

584101
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

584113
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

584125
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R MUCONOLACTONE DASH DELTA DASH ISOMERASE DASH RXN
type: Reaction
product: 579777
reactant: 579765
notes: GENE_ASSOCIATION: ACIAD1447
is: MUCONOLACTONE-DELTA-ISOMERASE-RXN
fast: false
reversible: true
name: muconolactone delta-isomerase

579777
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OXOADIPATE DASH ENOL DASH LACTONE LBRACKET C RBRACKET

579765
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 741 LBRACKET C RBRACKET

R TRANS DASH RXN DASH C10 COLON 0
type: Reaction
product: 584293
is: TRANS-RXNIM-5726
reactant: 584281
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
reversible: true
product: 584305
name: transport of decanoate [extraorganism;cytosol](secondary symport)
fast: false
reactant: 584269

584293
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

584281
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

584305
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET C RBRACKET

584269
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET E RBRACKET

R ACONITATEDEHYDR DASH RXN
type: Reaction
reversible: true
product: 596923
is: ACONTa
fast: false
product: 596911
is: ACONITATEDEHYDR-RXN
notes: GENE_ASSOCIATION: ACIAD2395 or ACIAD3090 or ACIAD2755
name: aconitase (citrate hydro-lyase)
reactant: 596899

596923
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596911
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH ACONITATE LBRACKET C RBRACKET

596899
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET

R RIBOKIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2392
reversible: false
is: RBK
name: ribokinase
is: RIBOKIN-RXN
product: 591319
reactant: 591295
product: 591307
reactant: 591283
fast: false

591319
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

591295
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

591307
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET

591283
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET

R RIBOFLAVIN DASH SYN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0249
name: riboflavin synthase
is: RIBOFLAVIN-SYN-RXN
reactant: 590909
product: 590933
product: 590921
is: RBFSb
fast: false
reversible: true

590909
type: SpeciesReference
stoichiometry: 2.0
species: M DIMETHYL DASH D DASH RIBITYL DASH LUMAZINE LBRACKET C RBRACKET

590933
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOFLAVIN LBRACKET C RBRACKET

590921
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH RIBOSYLAMINO DASH 1H DASH 3H DASH PYR DASH DIONE LBRACKET C RBRACKET

R ANTHRANSYN DASH RXN
type: Reaction
is: ANS
product: 581556
notes: GENE_ASSOCIATION: ACIAD0297 and ACIAD2461
reactant: 581544
product: 581568
reversible: true
is: ANTHRANSYN-RXN
fast: false
reactant: 581532
product: 581580
name: anthranilate synthase

581556
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

581544
type: SpeciesReference
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET

581568
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

581532
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

581580
type: SpeciesReference
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET C RBRACKET

576454
type: Reaction
notes: GENE_ASSOCIATION:
reactant: 576502
reactant: 576490
fast: false
reactant: 576478
name: generic acyl acp of lps assembly
reversible: true
reactant: 576466
product: 576514

576502
type: SpeciesReference
stoichiometry: 0.18
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET

576490
type: SpeciesReference
stoichiometry: 0.1
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET

576478
type: SpeciesReference
stoichiometry: 0.62
species: M C12 COLON 0 DASH ACP LBRACKET C RBRACKET

576466
type: SpeciesReference
stoichiometry: 0.1
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET

576514
type: SpeciesReference
stoichiometry: 1.0
species: 570703

M 4 DASH AMINO DASH BUTYRATE LBRACKET E RBRACKET
type: Species
constant: false
in compartment: 570126
is: C00334
name: 4-aminobutyrate
is: 4abut
initial concentration: NaN
boundary condition: false
initial amount: NaN
is: 4-AMINO-BUTYRATE
has only substance units: false

R SHIKIMATE DASH PQQ DASH RXN
type: Reaction
fast: false
reactant: 577719
reversible: true
product: 577743
notes: GENE_ASSOCIATION: ACIAD1716
reactant: 577707
product: 577731
name: shikimate dehydrogenase, pqq
is: SHIKIMATE-PQQ-RXN

577719
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET P RBRACKET

577743
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET

577707
type: SpeciesReference
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET

577731
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET

599394
type: Reaction
reactant: 599406
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glycolate

599406
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET E RBRACKET

R C10 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: OHACYL-COA-DEHYDROG-RXN
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
reactant: 603032
product: 603056
reactant: 603020
product: 603044
reversible: false
name: hydroxyacyl-coa dehydrogenase (c10:0)
is: HACD4i
fast: false

603032
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

603056
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

603020
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

603044
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R 1 PERIOD 2 PERIOD 1 PERIOD 9 DASH RXN
type: Reaction
fast: false
is: GAPD
reactant: 616983
reversible: false
notes: GENE_ASSOCIATION: ACIAD0546
reactant: 616971
is: PGK
name: glyceraldehyde-3-phosphate dehydrogenase (nadp+)
product: 617019
is: 1.2.1.9-RXN
product: 617007
reactant: 616995

616983
type: SpeciesReference
stoichiometry: 1.0
species: M GAP LBRACKET C RBRACKET

616971
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

617019
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

617007
type: SpeciesReference
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET

616995
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

M THYMIDINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
is: thymd
is: THYMIDINE
boundary condition: false
initial amount: NaN
constant: false
name: thymidine
is: C00214
in compartment: 570138

570330
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-oxooctadec-9-enoyl-coa

587961
type: Reaction
product: 588010
product: 587998
reactant: 587985
reactant: 587973
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: generic lps assembly

588010
type: SpeciesReference
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET

587998
type: SpeciesReference
stoichiometry: 3.005
species: 570583

587985
type: SpeciesReference
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH A LBRACKET C RBRACKET

587973
type: SpeciesReference
stoichiometry: 1.0
species: 570414

R MALIC DASH NADP DASH RXN
type: Reaction
name: malate dehydrogenase (oxaloacetate decarboxylating) (nadp+)
product: 589536
fast: false
notes: GENE_ASSOCIATION: ACIAD2287
product: 589548
product: 589524
is: MALIC-NADP-RXN
is: ME2
reversible: false
reactant: 589512
reactant: 589500

589536
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

589548
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

589524
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

589512
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

589500
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

R C18 COLON 1 LPAREN C9 RPAREN DASH COA DASH THIOLASE DASH RXN
type: Reaction
is: THIOESTER-RXN
product: 590524
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
product: 590512
reversible: false
name: acyl-coa thiolase (c18:1(c9))
fast: false
reactant: 590500
reactant: 590488

590524
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

590512
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

590500
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

590488
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET

R CARBPSYN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2861 and ACIAD2860
name: carbamoyl-phosphate synthase (glutamine-hydrolysing)
product: 576261
reversible: false
fast: false
product: 576273
product: 576298
reactant: 576249
reactant: 576237
reactant: 576201
product: 576285
is: CARBPSYN-RXN
is: CBFS
reactant: 576225
reactant: 576213

576261
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

576273
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

576298
type: SpeciesReference
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET

576249
type: SpeciesReference
stoichiometry: 2.0
species: M ATP LBRACKET C RBRACKET

576237
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

576201
type: SpeciesReference
stoichiometry: 1.0
species: M HCO3 LBRACKET C RBRACKET

576285
type: SpeciesReference
stoichiometry: 1.0
species: M CARBAMOYL DASH P LBRACKET C RBRACKET

576225
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

576213
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R UDPACYLGLCNACDEACETYL DASH RXN
type: Reaction
reversible: false
is: UHGADA
reactant: 579392
product: 579416
product: 579404
fast: false
reactant: 579380
is: UDPACYLGLCNACDEACETYL-RXN
notes: GENE_ASSOCIATION: ACIAD3510
name: udp-3-o-acyl-n-acetylglucosamine deacetylase

579392
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

579416
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

579404
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH GLUCOSAMINE LBRACKET C RBRACKET

579380
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH ACETYLGLUCOSAMINE LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5837
type: Reaction
name: transport of vanillate [extraorganism;cytosol](secondary symport)
is: TRANS-RXNIM-5837
product: 582762
reversible: true
reactant: 582738
notes: GENE_ASSOCIATION: ACIAD0982
reactant: 582750
fast: false
product: 582774

582762
type: SpeciesReference
stoichiometry: 1.0
species: M VANILLATE LBRACKET C RBRACKET

582738
type: SpeciesReference
stoichiometry: 1.0
species: M VANILLATE LBRACKET E RBRACKET

582750
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

582774
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

M O DASH PHOSPHO DASH L DASH HOMOSERINE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
initial amount: NaN
constant: false
boundary condition: false
name: o-phospho-l-homoserine
in compartment: 570138
is: O-PHOSPHO-L-HOMOSERINE
is: phom
has only substance units: false
is: C01102

R TRANS DASH RXN DASH 99
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1011 or ACIAD1012 or ACIAD3460
product: 617550
fast: false
product: 617562
reactant: 617538
reactant: 617525
is: TRANS-RXN-99
reversible: false
is: CHLt2pp
name: transport of choline [extraorganism;cytosol](secondary symport)

617550
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

617562
type: SpeciesReference
stoichiometry: 1.0
species: M CHOLINE LBRACKET C RBRACKET

617538
type: SpeciesReference
stoichiometry: 1.0
species: M CHOLINE LBRACKET E RBRACKET

617525
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

587433
type: Reaction
product: 587457
reactant: 587445
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of ethanol [extraorganism;cytosol](passive)

587457
type: SpeciesReference
stoichiometry: 1.0
species: M ETOH LBRACKET C RBRACKET

587445
type: SpeciesReference
stoichiometry: 1.0
species: M ETOH LBRACKET E RBRACKET

587841
type: Reaction
reactant: 587853
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of p-hydroxybenzoate

587853
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET E RBRACKET

M 4 DASH HYDROXYBENZOATE LBRACKET E RBRACKET
type: Species
is: 4-hydroxybenzoate
is: 4hbz
initial amount: NaN
initial concentration: NaN
in compartment: 570126
constant: false
has only substance units: false
is: C00156
name: p-hydroxybenzoate
boundary condition: false

589115
type: Reaction
product: 589163
product: 589151
product: 589139
reactant: 589127
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: peptidoglycan synthesis

589163
type: SpeciesReference
stoichiometry: 0.8
species: M D DASH ALANINE LBRACKET E RBRACKET

589151
type: SpeciesReference
stoichiometry: 0.9208
species: 570366

589139
type: SpeciesReference
stoichiometry: 1.0
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET

589127
type: SpeciesReference
stoichiometry: 1.0
species: M C6 LBRACKET C RBRACKET

R GLYCEROL DASH 3 DASH P DASH ACYLTRANSFER DASH PL DASH RXN
type: Reaction
reactant: 609715
reactant: 609703
product: 609728
is: GLYCEROL-3-P-ACYLTRANSFER-RXN
name: glycerol-3-phosphate acyltransferase
reversible: false
notes: GENE_ASSOCIATION: ACIAD3232
fast: false
product: 609740

609715
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET

609703
type: SpeciesReference
stoichiometry: 1.0
species: 570631

609728
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

609740
type: SpeciesReference
stoichiometry: 1.0
species: 570475

R C14 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
is: 3HAD140
reversible: false
product: 610726
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
reactant: 610714
product: 610738
name: 3hydroxyacyl-acp dehydratase (c14:0)
fast: false

610726
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

M C14 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET
type: Species
name: trans-tetradec-2-enoyl-coa
is: td2coa
in compartment: 570138
is: C05273
constant: false
initial concentration: NaN
has only substance units: false
initial amount: NaN
boundary condition: false

610714
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OHMYRISTOYL DASH ACP LBRACKET C RBRACKET

610738
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R RXN0 DASH 361
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2386
product: 607808
fast: false
reversible: false
is: CYTDH
is: RXN0-361
product: 607820
reactant: 607796
reactant: 607784
name: cytidine hydrolase

607808
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE LBRACKET C RBRACKET

607820
type: SpeciesReference
stoichiometry: 1.0
species: M CYTOSINE LBRACKET C RBRACKET

607796
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

607784
type: SpeciesReference
stoichiometry: 1.0
species: M CYTIDINE LBRACKET C RBRACKET

R RXN0 DASH 882
type: Reaction
reactant: 589668
reversible: true
is: RXN0-882
product: 589680
product: 589692
notes: GENE_ASSOCIATION: ACIAD0561
name: 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase
reactant: 589656
fast: false

589668
type: SpeciesReference
stoichiometry: 1.0
species: M 2C DASH METH DASH D DASH ERYTHRITOL DASH CYCLODIPHOSPHATE LBRACKET C RBRACKET

589680
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

589692
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROXY DASH METHYL DASH BUTENYL DASH DIP LBRACKET C RBRACKET

589656
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

614075
type: Reaction
reactant: 614087
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of h2o

614087
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET E RBRACKET

M WATER LBRACKET E RBRACKET
type: Species
is: WATER
is: C00001
has only substance units: false
initial amount: NaN
boundary condition: false
is: h2o
constant: false
initial concentration: NaN
name: h2o
in compartment: 570126

612242
type: Reaction
product: 612266
reactant: 612254
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of salicylate [extraorganism;cytosol](passive)

612266
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET

612254
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET E RBRACKET

R 1 PERIOD 1 PERIOD 1 PERIOD 259 DASH RXN
type: Reaction
reversible: false
product: 594720
reactant: 594696
product: 594708
notes: GENE_ASSOCIATION: ACIAD1690
is: 1.1.1.259-RXN
fast: false
reactant: 594684
name: 3-hydroxypimeloyl-coa dehydrogenase

594720
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OXOPIMELOYL DASH COA LBRACKET C RBRACKET

594696
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

594708
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

594684
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH HYDROXYPIMELOYL DASH COA LBRACKET C RBRACKET

M 3 DASH HYDROXYPIMELOYL DASH COA LBRACKET C RBRACKET
type: Species
name: 3-hydroxypimeloyl-coa
is: C06714
initial amount: NaN
has only substance units: false
is: 3-HYDROXYPIMELOYL-COA
in compartment: 570138
initial concentration: NaN
constant: false
boundary condition: false

http://identifiers.org/biomodels.db/MODEL1949107276#R_C10_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
type: Reaction
reactant: 612916
reversible: true
product: 612940
name: dicarboxylate 3oxoacyl-coa thiolase (c10:0)
is: RXNIM-6203
product: 612929
fast: false
notes: GENE_ASSOCIATION: ACIAD1689
reactant: 612904

612916
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

612940
type: SpeciesReference
stoichiometry: 1.0
species: 571100

612929
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

612904
type: SpeciesReference
stoichiometry: 1.0
species: 570811

R C18 COLON 1 LPAREN C9 RPAREN DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
product: 596165
product: 596153
reactant: 596141
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: false
name: 3hydroxyacyl-acp dehydratase (c18:1(c9))

596165
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596153
type: SpeciesReference
stoichiometry: 1.0
species: 570968

596141
type: SpeciesReference
stoichiometry: 1.0
species: 570871

R PYRNUTRANSHYDROGEN DASH RXN
type: Reaction
fast: false
is: NADTRHD
product: 578092
notes: GENE_ASSOCIATION: ACIAD2274
reversible: false
product: 578080
reactant: 578056
name: nad(p)(+) transhydrogenase (b-specific)
reactant: 578068
is: PYRNUTRANSHYDROGEN-RXN

578092
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

578080
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

578056
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

578068
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

585001
type: Reaction
reactant: 585013
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of no2-

585013
type: SpeciesReference
stoichiometry: 1.0
species: M NITRITE LBRACKET E RBRACKET

M B DASH ALANINE LBRACKET C RBRACKET
type: Species
is: ala-B
name: beta-alanine
boundary condition: false
is: B-ALANINE
constant: false
initial concentration: NaN
initial amount: NaN
has only substance units: false
in compartment: 570138
is: C00099

R GUANIDINOBUTYRASE DASH RXN
type: Reaction
product: 584257
is: GUANIDINOBUTYRASE-RXN
product: 584245
reversible: false
name: guanidinobutyrase
reactant: 584233
reactant: 584221
fast: false
notes: GENE_ASSOCIATION: ACIAD1299

584257
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET

584245
type: SpeciesReference
stoichiometry: 1.0
species: M UREA LBRACKET C RBRACKET

584233
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 592 LBRACKET C RBRACKET

584221
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

597712
type: Reaction
reactant: 597725
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of decanoate

597725
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 LBRACKET E RBRACKET

571016
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyoctadec-9-enoyl-coa

R 2 PERIOD 5 PERIOD 1 PERIOD 19 DASH RXN
type: Reaction
is: PSCVT
product: 617151
reactant: 617127
product: 617163
is: 2.5.1.19-RXN
reversible: false
name: 3-phosphoshikimate 1-carboxyvinyltransferase
notes: GENE_ASSOCIATION: ACIAD2222
fast: false
reactant: 617139

617151
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

617127
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE DASH 5P LBRACKET C RBRACKET

617163
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH ENOLPYRUVYL DASH SHIKIMATE DASH 5P LBRACKET C RBRACKET

617139
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHO DASH ENOL DASH PYRUVATE LBRACKET C RBRACKET

R DALADEHYDROG DASH RXN
type: Reaction
product: 573217
reactant: 573193
reversible: true
product: 573205
is: DALADEHYDROG-RXN
reactant: 573169
notes: GENE_ASSOCIATION: ACIAD1998 or ACIAD0922 or ACIAD0115
is: DAAD
reactant: 573181
name: d-alanine dehydrogenase
product: 573230
fast: false

573217
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

573193
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

573205
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

573169
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

573181
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET C RBRACKET

573230
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

R C6 COLON 1 LPAREN C4 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 600524
is: OHACYL-COA-DEHYDROG-RXN
reactant: 600512
product: 600536
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
product: 600548
fast: false
name: hydroxyacyl-coa dehydrogenase (c6:1(c4))
reversible: false

600524
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

600512
type: SpeciesReference
stoichiometry: 1.0
species: 571172

600536
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

600548
type: SpeciesReference
stoichiometry: 1.0
species: 570463

570463
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: trans-3-oxohex-4-enoyl-coa

R UROPORIIIMETHYLTRANSA DASH RXN
type: Reaction
product: 595116
is: UROPORIIIMETHYLTRANSA-RXN
name: uroporphyrinogen-iii c-methyltransferase
fast: false
reactant: 595104
notes: GENE_ASSOCIATION: ACIAD2934
reversible: false
is: UPP3MT
product: 595128
reactant: 595092

595116
type: SpeciesReference
stoichiometry: 2.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET

595104
type: SpeciesReference
stoichiometry: 2.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

595128
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROSIROHYDROCHLORIN LBRACKET C RBRACKET

595092
type: SpeciesReference
stoichiometry: 1.0
species: M UROPORPHYRINOGEN DASH III LBRACKET C RBRACKET

R DTDPGLUCOSEPP DASH RXN
type: Reaction
is: DTDPGLUCOSEPP-RXN
product: 576442
product: 576430
is: G1PTT
notes: GENE_ASSOCIATION: ACIAD0079
name: glucose-1-phosphate thymidylyltransferase
reactant: 576406
reversible: true
fast: false
reactant: 576418

576442
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

576430
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH D DASH GLUCOSE LBRACKET C RBRACKET

576406
type: SpeciesReference
stoichiometry: 1.0
species: M GLC DASH 1 DASH P LBRACKET C RBRACKET

576418
type: SpeciesReference
stoichiometry: 1.0
species: M TTP LBRACKET C RBRACKET

R ACETATEKIN DASH RXN
type: Reaction
reactant: 600632
product: 600644
reactant: 600620
reversible: true
notes: GENE_ASSOCIATION: ACIAD0541
is: ACETATEKIN-RXN
is: ACKr
product: 600656
fast: false
name: acetate kinase

600632
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

600644
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

600620
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

600656
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH P LBRACKET C RBRACKET

590041
type: Reaction
reactant: 590053
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of toluene

590053
type: SpeciesReference
stoichiometry: 1.0
species: M TOLUENE LBRACKET E RBRACKET

M CPD DASH 173 LBRACKET C RBRACKET
type: Species
is: CPD-173
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: salicyl alcohol

R TRANS DASH RXN DASH C8 COLON 0
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
name: transport of octanoate [extraorganism;cytosol](secondary symport)
product: 577996
fast: false
product: 577984
is: TRANS-RXNIM-5726
reversible: true
reactant: 577972
reactant: 577960

577996
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET

577984
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

577972
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

577960
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET E RBRACKET

615188
type: Reaction
reactant: 615200
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of benzyl alcohol

615200
type: SpeciesReference
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET E RBRACKET

M BENZYL DASH ALCOHOL LBRACKET E RBRACKET
type: Species
is: C00556
initial amount: NaN
constant: false
boundary condition: false
in compartment: 570126
has only substance units: false
name: benzyl alcohol
initial concentration: NaN
is: BENZYL-ALCOHOL

R BRANCHED DASH CHAINAMINOTRANSFERLEU DASH RXN
type: Reaction
fast: false
name: leucine aminotransferase
product: 585049
reactant: 585037
product: 585061
is: LEUTAi
reactant: 585025
notes: GENE_ASSOCIATION: ACIAD0112 or ACIAD0597
reversible: true
is: BRANCHED-CHAINAMINOTRANSFERLEU-RXN

585049
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

585037
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

585061
type: SpeciesReference
stoichiometry: 1.0
species: M LEU LBRACKET C RBRACKET

585025
type: SpeciesReference
stoichiometry: 1.0
species: M 2K DASH 4CH3 DASH PENTANOATE LBRACKET C RBRACKET

R CYT DASH UBIQUINOL DASH OXID DASH D DASH RXN
type: Reaction
product: 596345
fast: false
notes: GENE_ASSOCIATION: ACIAD2290 and ACIAD2291
product: 596358
is: CYTBD
reactant: 596321
reversible: false
name: cytochrome oxidase bd
reactant: 596297
is: RXN0-5266
product: 596333
reactant: 596309

596345
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

596358
type: SpeciesReference
stoichiometry: 4.0
species: M PROTON LBRACKET P RBRACKET

596321
type: SpeciesReference
stoichiometry: 2.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

596297
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

596333
type: SpeciesReference
stoichiometry: 2.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

596309
type: SpeciesReference
stoichiometry: 4.0
species: M PROTON LBRACKET C RBRACKET

R GTP DASH CYCLOHYDRO DASH II DASH RXN
type: Reaction
product: 615704
notes: GENE_ASSOCIATION: ACIAD3249
product: 615692
reactant: 615668
fast: false
name: gtp cyclohydrolase ii
is: GTPCII2
reversible: true
is: GTP-CYCLOHYDRO-II-RXN
reactant: 615680
product: 615716

615704
type: SpeciesReference
stoichiometry: 1.0
species: M DIAMINO DASH OH DASH PHOSPHORIBOSYLAMINO DASH PYR LBRACKET C RBRACKET

M DIAMINO DASH OH DASH PHOSPHORIBOSYLAMINO DASH PYR LBRACKET C RBRACKET
type: Species
has only substance units: false
boundary condition: false
constant: false
in compartment: 570138
initial concentration: NaN
initial amount: NaN
name: 2,5-diamino-6-(ribosylamino)-4-(3h)-pyrimidinone 5'-phosphate
is: DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR
is: 25drapp

615692
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET

615668
type: SpeciesReference
stoichiometry: 1.0
species: M GTP LBRACKET C RBRACKET

615680
type: SpeciesReference
stoichiometry: 3.0
species: M WATER LBRACKET C RBRACKET

615716
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R C8 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 598128
is: ACYLCOADEHYDROG-RXN
reactant: 598115
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
fast: false
product: 598152
reversible: false
product: 598140
name: acyl-coa dehydrogenase (c8:0)
is: ACOAD3f

598128
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET

598115
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

598152
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

598140
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

R GMP DASH SYN DASH GLUT DASH RXN
type: Reaction
reactant: 606846
reactant: 606882
is: GMP-SYN-GLUT-RXN
name: gmp synthase (glutamine-hydrolysing)
product: 606906
notes: GENE_ASSOCIATION: ACIAD0151
fast: false
is: GMPS2
reversible: true
product: 606894
product: 606930
product: 606918
reactant: 606858
reactant: 606870

606846
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

606882
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHOSINE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

606906
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

606894
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

606930
type: SpeciesReference
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET

606918
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

606858
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

606870
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R TRANS DASH RXN DASH C18 COLON 0
type: Reaction
name: transport of octadenoate [extraorganism;cytosol](secondary symport)
reversible: true
product: 582906
fast: false
reactant: 582870
product: 582894
reactant: 582882
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
is: TRANS-RXNIM-5726

582906
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET

582870
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET E RBRACKET

582894
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

582882
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

M C5 COLON 0 LBRACKET E RBRACKET
type: Species
name: pentanoate
initial amount: NaN
constant: false
boundary condition: false
initial concentration: NaN
in compartment: 570126
has only substance units: false
is: C00803
is: VALERATE

577756
type: Reaction
reactant: 577768
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of cytidine

577768
type: SpeciesReference
stoichiometry: 1.0
species: M CYTIDINE LBRACKET E RBRACKET

R TRANS DASH RXN DASH FUM
type: Reaction
product: 596514
reactant: 596490
notes: GENE_ASSOCIATION: ACIAD1026 or ACIAD2227 or ACIAD1191 or ACIAD1866
reversible: false
product: 596502
fast: false
name: transport of fumarate [extraorganism;cytosol](secondary symport)
reactant: 596478
is: TRANS-RXN-121B

596514
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

596490
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

596502
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

596478
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET E RBRACKET

R FOLYLPOLYGLUTAMATESYNTH DASH RXN
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD0644
product: 585990
product: 585978
reactant: 585941
is: FOLYLPOLYGLUTAMATESYNTH-RXN
reactant: 585966
product: 586002
reactant: 585953
name: folylpolyglutamate synthase
reversible: false

585990
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1301 LBRACKET C RBRACKET

585978
type: SpeciesReference
stoichiometry: 2.0
species: M PI LBRACKET C RBRACKET

585941
type: SpeciesReference
stoichiometry: 2.0
species: M GLT LBRACKET C RBRACKET

585966
type: SpeciesReference
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET

586002
type: SpeciesReference
stoichiometry: 2.0
species: M ADP LBRACKET C RBRACKET

585953
type: SpeciesReference
stoichiometry: 2.0
species: M ATP LBRACKET C RBRACKET

R TRANS DASH RXN DASH C12 COLON 0
type: Reaction
reactant: 592186
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
product: 592210
is: TRANS-RXNIM-5726
name: transport of dodecanoate [extraorganism;cytosol](secondary symport)
fast: false
product: 592222
reversible: true
reactant: 592198

592186
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET E RBRACKET

592210
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

592222
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 LBRACKET C RBRACKET

592198
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R C16 COLON 1 LPAREN C7 RPAREN DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
product: 587925
product: 587913
reactant: 587901
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: false
name: 3hydroxyacyl-acp dehydratase (c16:1(c7))

587925
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

587913
type: SpeciesReference
stoichiometry: 1.0
species: 571148

587901
type: SpeciesReference
stoichiometry: 1.0
species: 571088

571088
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-3-hydroxyhexadec-7-enoyl-acp

579067
type: Reaction
reactant: 579079
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of coniferyl aldehyde

579079
type: SpeciesReference
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET E RBRACKET

R 1 DASH ACYLGLYCEROL DASH 3 DASH P DASH ACYLTRANSFER DASH PL DASH RXN
type: Reaction
product: 601198
reactant: 601186
is: 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN
notes: GENE_ASSOCIATION: ACIAD3232
name: glycerol-3-phosphate acyltransferase
reactant: 601174
product: 601210
reversible: false
fast: false

601198
type: SpeciesReference
stoichiometry: 1.0
species: 570919

601186
type: SpeciesReference
stoichiometry: 1.0
species: 570475

601174
type: SpeciesReference
stoichiometry: 1.0
species: 570631

601210
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

R GLUTARYL DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ACIAD1660
is: GLUTARYL-COA-DEHYDROGENASE-RXN
reactant: 573603
product: 573651
product: 573639
reactant: 573615
name: glutaryl-coa dehydrogenase (producing crotonyl-coa)
product: 573627
fast: false

573603
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

573651
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

573639
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

573615
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTARYL DASH COA LBRACKET C RBRACKET

573627
type: SpeciesReference
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET

R TRANS DASH RXN DASH ADIPATE
type: Reaction
name: transport of adipate [extraorganism;cytosol](secondary symport)
fast: false
product: 611230
reactant: 611218
reactant: 611206
notes: GENE_ASSOCIATION: ACIAD1694
is: TRANS-RXNIM-5909
product: 611242
reversible: true

611230
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

611218
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

611206
type: SpeciesReference
stoichiometry: 1.0
species: M ADIPATE LBRACKET E RBRACKET

611242
type: SpeciesReference
stoichiometry: 1.0
species: M ADIPATE LBRACKET C RBRACKET

M BIOTIN LBRACKET C RBRACKET
type: Species
is: BIOTIN
name: biotin
initial amount: NaN
in compartment: 570138
is: btn
is: C00120
has only substance units: false
initial concentration: NaN
constant: false
boundary condition: false

M D DASH GLT LBRACKET C RBRACKET
type: Species
constant: false
boundary condition: false
initial concentration: NaN
has only substance units: false
is: glu-D
initial amount: NaN
is: C00217
name: d-glutamate
in compartment: 570138
is: D-GLT

581870
type: Reaction
reactant: 581882
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of glycerol

581882
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL LBRACKET E RBRACKET

R SARCOX DASH RXN
type: Reaction
is: SARCOX
reactant: 606077
is: SARCOX-RXN
reactant: 606089
fast: false
notes: GENE_ASSOCIATION: ACIAD2549 and ACIAD2550 and ACIAD2551 and ACIAD2552
reversible: false
reactant: 606065
product: 606113
name: sarcosine oxidase
product: 606101
product: 606125

606077
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

606089
type: SpeciesReference
stoichiometry: 1.0
species: M SARCOSINE LBRACKET C RBRACKET

M SARCOSINE LBRACKET C RBRACKET
type: Species
name: sarcosine
boundary condition: false
in compartment: 570138
constant: false
is: C00213
initial concentration: NaN
is: SARCOSINE
initial amount: NaN
has only substance units: false
is: sarcs

606065
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

606113
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

606101
type: SpeciesReference
stoichiometry: 1.0
species: M FORMALDEHYDE LBRACKET C RBRACKET

606125
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

M DETHIOBIOTIN LBRACKET C RBRACKET
type: Species
has only substance units: false
is: DETHIOBIOTIN
initial amount: NaN
in compartment: 570138
boundary condition: false
is: dtbt
name: dethiobiotin
initial concentration: NaN
constant: false
is: C01909

R NITRATREDUCT DASH RXN
type: Reaction
name: nitrate reductase
notes: GENE_ASSOCIATION: ACIAD1908 and ACIAD1909
product: 613410
product: 613387
reactant: 613362
reversible: false
product: 613398
reactant: 613375
is: NITRATREDUCT-RXN
fast: false
is: NO3R1pp

613410
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

613387
type: SpeciesReference
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET

613362
type: SpeciesReference
stoichiometry: 1.0
species: M NITRATE LBRACKET C RBRACKET

613398
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

613375
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

R 4 DASH COUMARATE DASH DASH COA DASH LIGASE DASH RXN
type: Reaction
reactant: 611930
is: 4-COUMARATE--COA-LIGASE-RXN
reactant: 611954
product: 611978
name: 4-coumarate--coa ligase
product: 611990
fast: false
product: 611966
notes: GENE_ASSOCIATION: ACIAD1724
reactant: 611942
reversible: false

611930
type: SpeciesReference
stoichiometry: 1.0
species: M COUMARATE LBRACKET C RBRACKET

M COUMARATE LBRACKET C RBRACKET
type: Species
is: C00811
has only substance units: false
constant: false
in compartment: 570138
is: COUMARATE
name: 4-coumarate
initial amount: NaN
boundary condition: false
initial concentration: NaN

611954
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

611978
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

611990
type: SpeciesReference
stoichiometry: 1.0
species: M COUMARYL DASH COA LBRACKET C RBRACKET

611966
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

611942
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

601258
type: Reaction
reactant: 601270
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-alanine

601270
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET E RBRACKET

R PREPHENATEDEHYDROG DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2222
reversible: false
product: 583739
fast: false
reactant: 583714
reactant: 583726
is: PREPHENATEDEHYDROG-RXN
product: 583765
product: 583752
name: prephenate dehydrogenase
is: PPND

583739
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

583714
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

583726
type: SpeciesReference
stoichiometry: 1.0
species: M PREPHENATE LBRACKET C RBRACKET

583765
type: SpeciesReference
stoichiometry: 1.0
species: M P DASH HYDROXY DASH PHENYLPYRUVATE LBRACKET C RBRACKET

583752
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

M OXYGEN DASH MOLECULE LBRACKET E RBRACKET
type: Species
initial amount: NaN
constant: false
is: C00007
is: o2
initial concentration: NaN
has only substance units: false
name: o2
boundary condition: false
is: OXYGEN-MOLECULE
in compartment: 570126

617730
type: Reaction
reactant: 617742
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-hydroxybenzylacetate

617742
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET E RBRACKET

R C6 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: ACOAD2f
reactant: 601451
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
product: 601477
reversible: false
is: ACYLCOADEHYDROG-RXN
name: acyl-coa dehydrogenase (c6:0)
fast: false
product: 601489
reactant: 601464

601451
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

601477
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

601489
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

601464
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH COA LBRACKET C RBRACKET

M C6 COLON 0 DASH COA LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
is: HEXANOYL-COA
constant: false
has only substance units: false
is: C05270
is: hxcoa
name: hexanoyl-coa
initial concentration: NaN
initial amount: NaN

576057
type: Reaction
reactant: 576069
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of deoxyinosine

576069
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET E RBRACKET

R GLUTAMIN DASH RXN
type: Reaction
product: 603970
reactant: 603958
is: GLUN
product: 603982
name: glutaminase
reversible: false
is: GLUTAMIN-RXN
notes: GENE_ASSOCIATION: ACIAD1040 or ACIAD2088
fast: false
reactant: 603946

603970
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

603958
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

603982
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

603946
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

R C18 COLON 0 DASH COA DASH THIOLASE DASH RXN
type: Reaction
product: 602924
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reactant: 602888
fast: false
reactant: 602900
is: FACOAE180
is: THIOESTER-RXN
reversible: false
name: acyl-coa thiolase (c18:0)
product: 602912

602924
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

602888
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH COA LBRACKET C RBRACKET

602900
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

602912
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET C RBRACKET

R CHORPYRLY DASH RXN
type: Reaction
reversible: false
product: 581038
notes: GENE_ASSOCIATION: ACIAD2456
is: CHORPYRLY-RXN
product: 581050
name: chorismate pyruvate lyase
fast: false
is: CHRPL
reactant: 581026

581038
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

581050
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET

581026
type: SpeciesReference
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET

572206
type: Reaction
reactant: 572218
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-coumarate

572218
type: SpeciesReference
stoichiometry: 1.0
species: M COUMARATE LBRACKET E RBRACKET

http://identifiers.org/biomodels.db/MODEL1949107276#R_C8_COLON_0_DASH_CARBOXY3OXOCOA_DASH_THIOLASE_DASH_RXN
type: Reaction
fast: false
reactant: 576803
reactant: 576815
is: RXNIM-6203
notes: GENE_ASSOCIATION: ACIAD1689
product: 576827
name: dicarboxylate 3oxoacyl-coa thiolase (c8:0)
product: 576839
reversible: true

576803
type: SpeciesReference
stoichiometry: 1.0
species: 570992

576815
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

576827
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET

576839
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

R DGMP DASH NUCLEOTIDASE DASH RXN
type: Reaction
reversible: false
product: 576551
name: dgmp nucleotidase
product: 576563
reactant: 576526
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
is: RXNIM-6195
reactant: 576539
is: NTD8pp
fast: false

576551
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

576563
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET C RBRACKET

576526
type: SpeciesReference
stoichiometry: 1.0
species: M DGMP LBRACKET C RBRACKET

576539
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R RXN DASH 1241
type: Reaction
product: 578634
reactant: 578597
notes: GENE_ASSOCIATION: ACIAD0503
reactant: 578585
fast: false
is: RXN-1241
product: 578621
reactant: 578609
reversible: true
name: coniferyl-aldehyde dehydrogenase

578634
type: SpeciesReference
stoichiometry: 1.0
species: M FERULOATE LBRACKET C RBRACKET

M FERULOATE LBRACKET C RBRACKET
type: Species
boundary condition: false
initial amount: NaN
in compartment: 570138
is: C01494
has only substance units: false
is: FERULOATE
constant: false
name: ferulate
initial concentration: NaN

578597
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

578585
type: SpeciesReference
stoichiometry: 1.0
species: M CONIFERYL DASH ALDEHYDE LBRACKET C RBRACKET

578621
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

578609
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R BENZYL DASH ALC DASH DEHYDROGENASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1429 or ACIAD1578
fast: false
product: 607014
reactant: 606990
product: 607002
name: benzyl alcohol dehydrogenase
reactant: 606978
is: BENZYL-ALC-DEHYDROGENASE-RXN
reversible: true

607014
type: SpeciesReference
stoichiometry: 1.0
species: M BENZALDEHYDE LBRACKET C RBRACKET

M BENZALDEHYDE LBRACKET C RBRACKET
type: Species
name: benzaldehyde
initial amount: NaN
initial concentration: NaN
in compartment: 570138
constant: false
boundary condition: false
has only substance units: false
is: BENZALDEHYDE
is: C00261

606990
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

607002
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

606978
type: SpeciesReference
stoichiometry: 1.0
species: M BENZYL DASH ALCOHOL LBRACKET C RBRACKET

R GLYOXI DASH RXN
type: Reaction
reversible: true
product: 575565
notes: GENE_ASSOCIATION: ACIAD2213
reactant: 575541
is: GLYOXI-RXN
name: lactoylglutathione lyase
is: LGTHL
fast: false
reactant: 575553

575565
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH LACTOYL DASH GLUTATHIONE LBRACKET C RBRACKET

575541
type: SpeciesReference
stoichiometry: 1.0
species: M METHYL DASH GLYOXAL LBRACKET C RBRACKET

575553
type: SpeciesReference
stoichiometry: 1.0
species: M GLUTATHIONE LBRACKET C RBRACKET

R R223 DASH RXN
type: Reaction
product: 602286
reversible: false
is: FACOAL80t2pp
reactant: 602226
reactant: 602238
product: 602274
is: R223-RXN
reactant: 602250
fast: false
product: 602262
name: acyl coa transferase (c8:0)
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106

602286
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH COA LBRACKET C RBRACKET

602226
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 LBRACKET C RBRACKET

602238
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

602274
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

602250
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

602262
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

M DCDP LBRACKET C RBRACKET
type: Species
initial amount: NaN
is: dcdp
name: dcdp
boundary condition: false
constant: false
initial concentration: NaN
is: DCDP
in compartment: 570138
has only substance units: false
is: C00705

R ACETOACETYL DASH COA DASH TRANSFER DASH RXN
type: Reaction
product: 572086
notes: GENE_ASSOCIATION: ACIAD2513 and ACIAD2514
is: ACETOACETYL-COA-TRANSFER-RXN
product: 572074
reactant: 572062
reactant: 572050
is: ACACCT
name: acetoacetyl-coa transferase
fast: false
reversible: true

572086
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

572074
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOACETYL DASH COA LBRACKET C RBRACKET

572062
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

572050
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET

607086
type: Reaction
product: 607110
reactant: 607098
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of 4-hydroxybenzylacetate [extraorganism;cytosol](passive)

607110
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET C RBRACKET

607098
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6115 LBRACKET E RBRACKET

R C16 COLON 1 LPAREN C7 RPAREN DASH COA DASH THIOLASE DASH RXN
type: Reaction
fast: false
is: THIOESTER-RXN
reactant: 615068
product: 615092
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
reactant: 615080
name: acyl-coa thiolase (c16:1(c7))
product: 615104
reversible: false

615068
type: SpeciesReference
stoichiometry: 1.0
species: 570294

615092
type: SpeciesReference
stoichiometry: 1.0
species: 570775

615080
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

615104
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R CDPREDUCT DASH RXN
type: Reaction
is: CDPREDUCT-RXN
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722
product: 592150
fast: false
name: cdp reductase
reversible: true
product: 592174
reactant: 592126
reactant: 592138
is: RNDR3
product: 592162

592150
type: SpeciesReference
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

592174
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

592126
type: SpeciesReference
stoichiometry: 1.0
species: M CDP LBRACKET C RBRACKET

592138
type: SpeciesReference
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

592162
type: SpeciesReference
stoichiometry: 1.0
species: M DCDP LBRACKET C RBRACKET

M UREA LBRACKET E RBRACKET
type: Species
constant: false
has only substance units: false
initial concentration: NaN
is: UREA
is: urea
name: urea
boundary condition: false
initial amount: NaN
in compartment: 570126
is: C00086

R TRANS DASH RXN DASH C14 COLON 0
type: Reaction
fast: false
reversible: true
reactant: 616570
is: TRANS-RXNIM-5726
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392
product: 616607
name: transport of tetradecanoate [extraorganism;cytosol](secondary symport)
product: 616594
reactant: 616582

616570
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET E RBRACKET

616607
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET C RBRACKET

616594
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

616582
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R ACETATE DASH DASH COA DASH LIGASE DASH RXN
type: Reaction
product: 607760
notes: GENE_ASSOCIATION: ACIAD1606 or ACIAD1611 or ACIAD3475
product: 607772
name: acetate--coa ligase
reactant: 607736
product: 607748
is: ACS
reversible: false
reactant: 607724
reactant: 607712
is: ACETATE--COA-LIGASE-RXN
fast: false

607760
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

607772
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

607736
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

607748
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

607724
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

607712
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R ACETYLHOMOSER DASH CYS DASH RXN
type: Reaction
is: AHSERL2
name: o-acetylhomoserine sulfhydrolase
is: ACETYLHOMOSER-CYS-RXN
product: 590572
reactant: 590548
product: 590560
fast: false
reactant: 590536
reversible: false
notes: GENE_ASSOCIATION: ACIAD3382 or ACIAD2314

590572
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

590548
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 667 LBRACKET C RBRACKET

590560
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH CYS LBRACKET C RBRACKET

590536
type: SpeciesReference
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET

R LPAREN DEOXY RPAREN ADENYLATE DASH KINASE DASH RXN
type: Reaction
fast: false
is: |(DEOXY)ADENYLATE-KINASE-RXN|
name: (deoxy)adenylate kinase
reactant: 608967
reactant: 608955
is: DADK
notes: GENE_ASSOCIATION: ACIAD1105
reversible: true
product: 608991
product: 608979

608967
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

608955
type: SpeciesReference
stoichiometry: 1.0
species: M DAMP LBRACKET C RBRACKET

608991
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

608979
type: SpeciesReference
stoichiometry: 1.0
species: M DADP LBRACKET C RBRACKET

R C12 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
reactant: 577190
reversible: true
fast: false
name: 3oxoacyl-coa thiolase (c12:0)
product: 577226
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
is: KAT5
is: KETOACYLCOATHIOL-RXN
reactant: 577202
product: 577214

577190
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

577226
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

577202
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

577214
type: SpeciesReference
stoichiometry: 1.0
species: M C10 COLON 0 DASH COA LBRACKET C RBRACKET

R ALARACECAT DASH RXN
type: Reaction
product: 585375
reactant: 585363
notes: GENE_ASSOCIATION: ACIAD2434 or ACIAD0116
is: ALARACECAT-RXN
is: ALAR
fast: false
reversible: true
name: alanine racemase

585375
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH ALANINE LBRACKET C RBRACKET

585363
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ALPHA DASH ALANINE LBRACKET C RBRACKET

R DIHYDRONEOPTERIN DASH MONO DASH P DASH DEPHOS DASH RXN
type: Reaction
is: DNMPPA
name: dihydroneopterin monophosphate dephosphorylase
reactant: 614626
product: 614665
product: 614652
notes: GENE_ASSOCIATION:
fast: false
is: DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN
reversible: false
reactant: 614639

614626
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRONEOPTERIN DASH P LBRACKET C RBRACKET

614665
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRO DASH NEO DASH PTERIN LBRACKET C RBRACKET

614652
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

614639
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R RXNIM DASH 6211
type: Reaction
reactant: 611545
product: 611581
is: RXNIM-6211
name: 3,4-dihydroxyphenylpropionyl-coa dehydrogenase
fast: false
product: 611569
reversible: true
reactant: 611557
notes: GENE_ASSOCIATION: ACIAD1723

611545
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6118 LBRACKET C RBRACKET

611581
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

611569
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEOYL DASH COA LBRACKET C RBRACKET

611557
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

R GLUTAMINESYN DASH RXN
type: Reaction
product: 573579
is: GLUTAMINESYN-RXN
reactant: 573543
reactant: 573555
is: GLNS
name: glutamate--ammonia ligase
reactant: 573531
notes: GENE_ASSOCIATION: ACIAD2458 or ACIAD2528
fast: false
reversible: false
product: 573567
product: 573591

573579
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

573543
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

573555
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

573531
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

573567
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

573591
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

M C6 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET
type: Species
in compartment: 570138
boundary condition: false
is: C05269
has only substance units: false
initial amount: NaN
constant: false
initial concentration: NaN
is: 3ohcoa
name: 3-oxoxyhexanoyl-coa

M CPD DASH 3571 LBRACKET E RBRACKET
type: Species
is: CPD-3571
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: tricarballylate

R RXNIM DASH 6208
type: Reaction
name: salicylacetate esterase
reversible: false
reactant: 576719
notes: GENE_ASSOCIATION: ACIAD1428
fast: false
reactant: 576707
product: 576731
product: 576743
is: RXNIM-6208

576719
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

576707
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6114 LBRACKET C RBRACKET

576731
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 173 LBRACKET C RBRACKET

576743
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

R THI DASH P DASH KIN DASH RXN
type: Reaction
reactant: 614286
notes: GENE_ASSOCIATION: ACIAD3573
reversible: true
product: 614325
is: THI-P-KIN-RXN
product: 614312
name: thiamine-phosphate kinase
is: TMPK
reactant: 614299
fast: false

614286
type: SpeciesReference
stoichiometry: 1.0
species: M THIAMINE DASH P LBRACKET C RBRACKET

M THIAMINE DASH P LBRACKET C RBRACKET
type: Species
is: C01081
is: thmmp
has only substance units: false
in compartment: 570138
boundary condition: false
initial amount: NaN
name: thiamine-phosphate
is: THIAMINE-P
initial concentration: NaN
constant: false

614325
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

614312
type: SpeciesReference
stoichiometry: 1.0
species: M THIAMINE DASH PYROPHOSPHATE LBRACKET C RBRACKET

614299
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R RXN0 DASH 743
type: Reaction
product: 601017
reactant: 601005
notes: GENE_ASSOCIATION: ACIAD3659
is: RXN0-743
is: AIRC3
fast: false
reversible: false
name: phosphoribosylaminoimidazole carboxylase, mutase subunit

601017
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH CARBOXY DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

M PHOSPHORIBOSYL DASH CARBOXY DASH AMINOIMIDAZOLE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
boundary condition: false
is: C04751
is: 5aizc
name: phosphoribosyl-carboxy-aminoimidazole
is: PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE
in compartment: 570138
initial amount: NaN

601005
type: SpeciesReference
stoichiometry: 1.0
species: M CPD0 DASH 181 LBRACKET C RBRACKET

R C5 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 587505
product: 587541
reactant: 587517
name: hydroxyacyl-coa dehydrogenase (c5:0)
product: 587529
is: OHACYL-COA-DEHYDROG-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
fast: false

587505
type: SpeciesReference
stoichiometry: 1.0
species: 570523

570523
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-hydroxypentanoyl-coa

587541
type: SpeciesReference
stoichiometry: 1.0
species: 571076

571076
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: 3-oxopentanoyl-coa

587517
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

587529
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R TRANS DASH RXN DASH CIT DASH MFS
type: Reaction
reversible: true
name: transport of citrate [extraorganism;cytosol](secondary symport)
fast: false
is: TRANS-RXNIM-5924
product: 588430
product: 588442
reactant: 588406
notes: GENE_ASSOCIATION: ACIAD0395 or ACIAD1541
reactant: 588418

588430
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET C RBRACKET

588442
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

588406
type: SpeciesReference
stoichiometry: 1.0
species: M CIT LBRACKET E RBRACKET

588418
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R PYRIMSYN1 DASH RXN
type: Reaction
reactant: 610208
name: 4-amino-2-methyl-5-phosphomethylpyrimidine synthetase
is: PYRIMSYN1-RXN
product: 610220
reversible: true
fast: false
notes: GENE_ASSOCIATION: ACIAD0276
is: AMPMS2
reactant: 610196
product: 610232

610208
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

610220
type: SpeciesReference
stoichiometry: 2.0
species: M FORMATE LBRACKET C RBRACKET

610196
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHORIBOSYL DASH 5 DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

610232
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYL DASH PYR DASH P LBRACKET C RBRACKET

R RXN0 DASH 902
type: Reaction
is: RXN0-902
product: 571906
name: hypoxanthine dehydrogenase
product: 571918
is: HXAND
fast: false
reactant: 571870
notes: GENE_ASSOCIATION: ACIAD2466 and ACIAD2467 and ACIAD2468
reactant: 571882
reactant: 571894
reversible: true

571906
type: SpeciesReference
stoichiometry: 1.0
species: M XANTHINE LBRACKET C RBRACKET

571918
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

571870
type: SpeciesReference
stoichiometry: 1.0
species: M HYPOXANTHINE LBRACKET C RBRACKET

571882
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

571894
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R THRESYN DASH RXN
type: Reaction
fast: false
product: 595334
reactant: 595297
reactant: 595309
notes: GENE_ASSOCIATION: ACIAD0263
reversible: false
product: 595321
name: threonine synthase
is: THRS
is: THRESYN-RXN

595334
type: SpeciesReference
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET

595297
type: SpeciesReference
stoichiometry: 1.0
species: M O DASH PHOSPHO DASH L DASH HOMOSERINE LBRACKET C RBRACKET

595309
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

595321
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

616863
type: Reaction
reactant: 616875
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 4-aminobutyrate

616875
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET E RBRACKET

R TRANS DASH RXNIM DASH 5923
type: Reaction
name: transport of tricarballylate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD1541
is: TRANS-RXNIM-5923
product: 598188
product: 598200
reversible: true
reactant: 598176
reactant: 598164
fast: false

598188
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

598200
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 3571 LBRACKET C RBRACKET

598176
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 3571 LBRACKET E RBRACKET

598164
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R C6 COLON 1 LPAREN C4 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
product: 610460
fast: false
is: KETOACYLCOATHIOL-RXN
name: 3oxoacyl-coa thiolase (c6:1(c4))
reactant: 610448
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
product: 610472
reversible: true
reactant: 610436

610460
type: SpeciesReference
stoichiometry: 1.0
species: M CROTONYL DASH COA LBRACKET C RBRACKET

610448
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

610472
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

610436
type: SpeciesReference
stoichiometry: 1.0
species: 570463

R OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZOQ DASH OH DASH RXN
type: Reaction
is: OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN
product: 573447
notes: GENE_ASSOCIATION: ACIAD1128
reactant: 573423
name: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
fast: false
reactant: 573435
reversible: false
is: OMMBLHX

573447
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH OH DASH METHOXY DASH BENZQ LBRACKET C RBRACKET

573423
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

573435
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH METHYL DASH METHOXY DASH BENZQ LBRACKET C RBRACKET

R TRANS DASH RXN DASH THYMIDINE
type: Reaction
reactant: 599008
product: 599033
notes: GENE_ASSOCIATION: ACIAD2389
name: transport of thymidine [extraorganism;cytosol](secondary symport)
fast: false
is: THMDt2pp
reversible: false
reactant: 598996
product: 599021
is: TRANS-RXN-108H

599008
type: SpeciesReference
stoichiometry: 1.0
species: M THYMIDINE LBRACKET E RBRACKET

599033
type: SpeciesReference
stoichiometry: 1.0
species: M THYMIDINE LBRACKET C RBRACKET

598996
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

599021
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R ASPDECARBOX DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2911
is: ASP1DC
name: aspartate 1-decarboxylase
is: ASPDECARBOX-RXN
reversible: false
fast: false
product: 593138
product: 593150
reactant: 593126

593138
type: SpeciesReference
stoichiometry: 1.0
species: M B DASH ALANINE LBRACKET C RBRACKET

593150
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

593126
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

R C18 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 612689
product: 612713
name: hydroxyacyl-coa dehydrogenase (c18:0)
product: 612701
reactant: 612677
is: HACD8i
fast: false
reversible: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
is: OHACYL-COA-DEHYDROG-RXN

612689
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

612713
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

612701
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

612677
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

R BRANCHED DASH CHAINAMINOTRANSFERVAL DASH RXN
type: Reaction
fast: false
reactant: 582690
product: 582714
notes: GENE_ASSOCIATION: ACIAD0597
product: 582726
is: VALTA
name: valine aminotransferase
reversible: true
reactant: 582702
is: BRANCHED-CHAINAMINOTRANSFERVAL-RXN

582690
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

582714
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

582726
type: SpeciesReference
stoichiometry: 1.0
species: M VAL LBRACKET C RBRACKET

582702
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET

R TRANS DASH RXN DASH CPD DASH 335
type: Reaction
product: 586771
reactant: 586759
notes: GENE_ASSOCIATION: ACIAD2510
is: TRANS-RXNIM-5925
fast: false
reversible: true
name: transport of (r)-3-hydroxybutanoate [extraorganism;cytosol](passive)

586771
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET C RBRACKET

586759
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 335 LBRACKET E RBRACKET

M TYR LBRACKET E RBRACKET
type: Species
name: l-tyrosine
is: TYR
boundary condition: false
is: tyr-L
constant: false
has only substance units: false
is: C00082
in compartment: 570126
initial concentration: NaN
initial amount: NaN

R TRANS DASH RXN DASH FE DASH NRAMP
type: Reaction
fast: false
product: 591043
product: 591055
is: RXN0-2421
reactant: 591031
is: FE2t2pp
reversible: false
name: transport of fe+2 [extraorganism;cytosol](secondary symport)
reactant: 591019
notes: GENE_ASSOCIATION: ACIAD2521

591043
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

591055
type: SpeciesReference
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET

591031
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

591019
type: SpeciesReference
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET E RBRACKET

R CARDIOLIPSYN DASH RXN
type: Reaction
product: 573483
product: 573471
reactant: 573459
notes: GENE_ASSOCIATION:
is: CARDIOLIPSYN-RXN
fast: false
reversible: true
name: cardiolipin synthase

573483
type: SpeciesReference
stoichiometry: 1.0
species: M CARDIOLIPIN LBRACKET C RBRACKET

573471
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL LBRACKET C RBRACKET

573459
type: SpeciesReference
stoichiometry: 2.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL LBRACKET C RBRACKET

R C6 COLON 1 LPAREN C4 RPAREN DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
product: 587036
reactant: 587025
reactant: 587013
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c6:1(c4))

587036
type: SpeciesReference
stoichiometry: 1.0
species: 571172

587025
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

587013
type: SpeciesReference
stoichiometry: 1.0
species: 570655

R TRANS DASH RXN DASH COUMARATE
type: Reaction
product: 598767
fast: false
product: 598779
reactant: 598743
name: transport of 4-coumarate [extraorganism;cytosol](secondary symport)
is: TRANS-RXNIM-5917
reversible: true
reactant: 598755
notes: GENE_ASSOCIATION: ACIAD1709

598767
type: SpeciesReference
stoichiometry: 1.0
species: M COUMARATE LBRACKET C RBRACKET

598779
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

598743
type: SpeciesReference
stoichiometry: 1.0
species: M COUMARATE LBRACKET E RBRACKET

598755
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R PMPOXI DASH RXN
type: Reaction
product: 584977
reactant: 584953
reactant: 584941
name: pyridoxamine-phosphate oxidase
is: PYAM5PO
reversible: false
product: 584989
reactant: 584929
product: 584965
fast: false
notes: GENE_ASSOCIATION: ACIAD3501
is: PMPOXI-RXN

584977
type: SpeciesReference
stoichiometry: 1.0
species: 570956

584953
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

584941
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

584989
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

584929
type: SpeciesReference
stoichiometry: 1.0
species: M PYRIDOXAMINE DASH 5P LBRACKET C RBRACKET

M PYRIDOXAMINE DASH 5P LBRACKET C RBRACKET
type: Species
is: pyam5p
initial concentration: NaN
in compartment: 570138
name: pyridoxamine 5'-phosphate
boundary condition: false
has only substance units: false
is: C00647
constant: false
initial amount: NaN
is: PYRIDOXAMINE-5P

584965
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

R P DASH PANTOCYSLIG DASH RXN
type: Reaction
reversible: true
reactant: 601912
reactant: 601924
fast: false
name: phosphopantothenate--cysteine ligase
is: P-PANTOCYSLIG-RXN
is: PPNCL2
notes: GENE_ASSOCIATION: ACIAD3125
product: 601936
product: 601960
reactant: 601900
product: 601948

601912
type: SpeciesReference
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET

601924
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH P DASH PANTOTHENATE LBRACKET C RBRACKET

601936
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

601960
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

601900
type: SpeciesReference
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET

601948
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH PHOSPHOPANTOTHENOYLCYSTEINE LBRACKET C RBRACKET

R SUCCDIAMINOPIMDESUCC DASH RXN
type: Reaction
fast: false
reversible: true
reactant: 594358
notes: GENE_ASSOCIATION: ACIAD0791
product: 594382
reactant: 594370
name: succinyl-diaminopimelate desuccinylase
is: SDPDS
product: 594394
is: SUCCDIAMINOPIMDESUCC-RXN

594358
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH SUCCINYLLL DASH 2 COMMA 6 DASH DIAMINOPIMELATE LBRACKET C RBRACKET

594382
type: SpeciesReference
stoichiometry: 1.0
species: M LL DASH DIAMINOPIMELATE LBRACKET C RBRACKET

M LL DASH DIAMINOPIMELATE LBRACKET C RBRACKET
type: Species
name: ll-diaminopimelate
boundary condition: false
is: LL-DIAMINOPIMELATE
initial concentration: NaN
is: 26dap-LL
initial amount: NaN
constant: false
in compartment: 570138
has only substance units: false
is: C00666

594370
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594394
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

R TRANS DASH RXN DASH PI DASH ABC
type: Reaction
product: 581942
reversible: false
notes: GENE_ASSOCIATION: ACIAD1212 and ACIAD1213 and ACIAD1214 and ACIAD1215
name: transport of phosphate [extraorganism;cytosol](secondary antiport)
reactant: 581918
is: PIuabcpp
fast: false
reactant: 581906
is: 3.6.3.27-RXN
product: 581930
reactant: 581894

581942
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

581918
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

581906
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

581930
type: SpeciesReference
stoichiometry: 2.0
species: M PI LBRACKET C RBRACKET

581894
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET E RBRACKET

R PHOSPHASERSYN DASH RXN
type: Reaction
reactant: 605475
is: PHOSPHASERSYN-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD3149
product: 605511
name: phosphatidylserine synthase
reactant: 605487
product: 605499
reversible: false

605475
type: SpeciesReference
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET

605511
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH SERINE LBRACKET C RBRACKET

M L DASH 1 DASH PHOSPHATIDYL DASH SERINE LBRACKET C RBRACKET
type: Species
boundary condition: false
has only substance units: false
is: L-1-PHOSPHATIDYL-SERINE
name: generic l-1-phosphatidyl-serine
initial amount: NaN
initial concentration: NaN
constant: false
is: C02737
in compartment: 570138

605487
type: SpeciesReference
stoichiometry: 1.0
species: M CDPDIACYLGLYCEROL LBRACKET C RBRACKET

605499
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

R C8 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
reversible: false
name: 3hydroxyacyl-acp dehydratase (c8:0)
is: 3HAD80
fast: false
reactant: 599970
product: 599982
product: 599994

599970
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

599982
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

599994
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R DCDPKIN DASH RXN
type: Reaction
reactant: 583075
reactant: 583063
product: 583099
fast: false
reversible: true
product: 583087
name: dcdp kinase
is: DCDPKIN-RXN
notes: GENE_ASSOCIATION: ACIAD0556
is: NDPK7

583075
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

583063
type: SpeciesReference
stoichiometry: 1.0
species: M DCDP LBRACKET C RBRACKET

583099
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

583087
type: SpeciesReference
stoichiometry: 1.0
species: M DCTP LBRACKET C RBRACKET

R C6 COLON 0 DASH COA DASH THIOLASE DASH RXN
type: Reaction
reversible: false
product: 607700
name: acyl-coa thiolase (c6:0)
product: 607688
is: THIOESTER-RXN
reactant: 607664
is: FACOAE60
notes: GENE_ASSOCIATION: ACIAD0341 or ACIAD3231 or ACIAD1023
fast: false
reactant: 607676

607700
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

607688
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET C RBRACKET

607664
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH COA LBRACKET C RBRACKET

607676
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R 1 PERIOD 1 PERIOD 1 PERIOD 215 DASH RXN
type: Reaction
reactant: 594900
reversible: true
notes: GENE_ASSOCIATION: ACIAD1327
fast: false
is: 2DGLCNRy
is: 1.1.1.215-RXN
name: gluconate 2-dehydrogenase
product: 594924
reactant: 594912
product: 594936

594900
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET

594924
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 377 LBRACKET C RBRACKET

594912
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

594936
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

R PRPPSYN DASH RXN
type: Reaction
is: PRPPS
reactant: 616486
name: ribose-phosphate pyrophosphokinase
product: 616510
notes: GENE_ASSOCIATION: ACIAD2907
product: 616498
fast: false
is: PRPPSYN-RXN
reversible: true
reactant: 616474

616486
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

616510
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

616498
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

616474
type: SpeciesReference
stoichiometry: 1.0
species: M RIBOSE DASH 5P LBRACKET C RBRACKET

R C8 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
name: 3oxoacyl-coa thiolase (c8:0)
product: 594236
reversible: true
product: 594248
fast: false
is: KETOACYLCOATHIOL-RXN
is: KAT3
reactant: 594224
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
reactant: 594212

594236
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH COA LBRACKET C RBRACKET

594248
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

594224
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

594212
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

594478
type: Reaction
reactant: 594491
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of nh4+

594491
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET E RBRACKET

R C14 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
fast: false
is: EAR140x
product: 586374
notes: GENE_ASSOCIATION: ACIAD3116
name: 2enoyl-acp reductase (c14:0)
reversible: false
reactant: 586362
reactant: 586350
product: 586386
is: ENOYL-ACP-REDUCT-NADH-RXN

586374
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH ACP LBRACKET C RBRACKET

586362
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

586350
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

586386
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R 2 DASH OCTAPRENYL DASH 6 DASH OHPHENOL DASH METHY DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0044
product: 577683
name: 2-octaprenyl-6-hydroxyphenol methylase
product: 577695
reactant: 577671
is: 2-OCTAPRENYL-6-OHPHENOL-METHY-RXN
reversible: false
reactant: 577659
fast: false
is: OHPHM

577683
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH METHOXYPHENOL LBRACKET C RBRACKET

577695
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET

577671
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

577659
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH OCTAPRENYL DASH 6 DASH HYDROXYPHENOL LBRACKET C RBRACKET

M 2 DASH OCTAPRENYL DASH 6 DASH HYDROXYPHENOL LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
is: C05811
name: 2-octaprenyl-6-hydroxyphenol
constant: false
boundary condition: false
is: 2-OCTAPRENYL-6-HYDROXYPHENOL
in compartment: 570138
is: 2ohph
has only substance units: false

R DTDPGLUCDEHYDRAT DASH RXN
type: Reaction
is: TDPGDH
product: 593935
reactant: 593910
reversible: false
product: 593923
is: DTDPGLUCDEHYDRAT-RXN
fast: false
name: dtdp-glucose 4,6-dehydratase
notes: GENE_ASSOCIATION: ACIAD0076

593935
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

593910
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH D DASH GLUCOSE LBRACKET C RBRACKET

593923
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH GLUCOSE LBRACKET C RBRACKET

R CPM DASH KDOSYNTH DASH RXN
type: Reaction
is: CPM-KDOSYNTH-RXN
reactant: 590753
reactant: 590765
is: KDOCT2
fast: false
product: 590789
product: 590777
notes: GENE_ASSOCIATION: ACIAD2362
name: 3-deoxy-manno-octulosonate cytidylyltransferase
reversible: false

590753
type: SpeciesReference
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET

590765
type: SpeciesReference
stoichiometry: 1.0
species: M KDO LBRACKET C RBRACKET

590789
type: SpeciesReference
stoichiometry: 1.0
species: M CMP DASH KDO LBRACKET C RBRACKET

M CMP DASH KDO LBRACKET C RBRACKET
type: Species
is: ckdo
is: C04121
has only substance units: false
constant: false
is: CMP-KDO
boundary condition: false
initial concentration: NaN
initial amount: NaN
name: cmp-3-deoxy-d-manno-octulosonate
in compartment: 570138

590777
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R TRANS DASH RXN DASH OXYGEN DASH MOLECULE
type: Reaction
product: 592704
reactant: 592692
notes: GENE_ASSOCIATION:
is: O2tpp
fast: false
reversible: true
name: transport of o2 [extraorganism;cytosol](passive)

592704
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

592692
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET E RBRACKET

R TRANS DASH RXN DASH C16 COLON 0
type: Reaction
reversible: true
product: 583027
reactant: 583003
is: TRANS-RXNIM-5726
reactant: 582991
product: 583015
fast: false
name: transport of hexadecanoate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD0835 or ACIAD1427 or ACIAD2788 or ACIAD3392

583027
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET C RBRACKET

583003
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

582991
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET E RBRACKET

583015
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R CPD DASH 1301 DASH ACTIVATION DASH RXN
type: Reaction
reversible: true
fast: false
name: 5-methyltetrahydropteroyltri-l-glutamate synthesis
product: 598272
reactant: 598224
product: 598260
product: 598284
product: 598248
notes: GENE_ASSOCIATION: ACIAD2255 and ACIAD2283
is: METHYLENETHFREDUCT-RXN
is: GLYOHMETRANS-RXN
reactant: 598212
reactant: 598236

598272
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

598224
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1301 LBRACKET C RBRACKET

598260
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1302 LBRACKET C RBRACKET

598284
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

598248
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

598212
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

598236
type: SpeciesReference
stoichiometry: 1.0
species: M SER LBRACKET C RBRACKET

R TETRAACYLDISACC4KIN DASH RXN
type: Reaction
product: 573315
reactant: 573303
product: 573327
notes: GENE_ASSOCIATION: ACIAD2363
name: tetraacyldisaccharide 4'-kinase
fast: false
is: TDSK
reactant: 573291
reversible: false
is: TETRAACYLDISACC4KIN-RXN

573315
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

573303
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

573327
type: SpeciesReference
stoichiometry: 1.0
species: M LIPID DASH IV DASH A LBRACKET C RBRACKET

573291
type: SpeciesReference
stoichiometry: 1.0
species: M BISOHMYR DASH GLC LBRACKET C RBRACKET

R CYCLOHEXADIENYL DASH DEHYDROGENASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2222
reactant: 577032
is: CYCLOHEXADIENYL-DEHYDROGENASE-RXN
product: 577082
reactant: 577044
name: cyclohexadienyl dehydrogenase
fast: false
reversible: false
product: 577056
product: 577069

577032
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 659 LBRACKET C RBRACKET

577082
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

577044
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

577056
type: SpeciesReference
stoichiometry: 1.0
species: M TYR LBRACKET C RBRACKET

577069
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R TRANS DASH RXN DASH DEOXYINOSINE
type: Reaction
reversible: false
name: transport of deoxyinosine [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-108E
notes: GENE_ASSOCIATION: ACIAD2389
fast: false
reactant: 580250
product: 580274
reactant: 580262
product: 580286
is: DINSt2pp

580250
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET E RBRACKET

580274
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

580262
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

580286
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET C RBRACKET

R ARGININE DASH N DASH SUCCINYLTRANSFERASE DASH RXN
type: Reaction
name: arginine n-succinyltransferase
reactant: 611134
is: AST
reversible: true
product: 611170
fast: false
notes: GENE_ASSOCIATION: ACIAD1286
is: ARGININE-N-SUCCINYLTRANSFERASE-RXN
product: 611158
reactant: 611146

611134
type: SpeciesReference
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET

611170
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

611158
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 421 LBRACKET C RBRACKET

611146
type: SpeciesReference
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET

586904
type: Reaction
reactant: 586929
reactant: 586965
reactant: 586940
reactant: 586917
notes: GENE_ASSOCIATION:
name: generic acyl-acp of triacylglycerol assembly
product: 586977
fast: false
reactant: 586952
reversible: true

586929
type: SpeciesReference
stoichiometry: 0.052
species: 570559

586965
type: SpeciesReference
stoichiometry: 0.717
species: M C16 COLON 0 DASH ACP LBRACKET C RBRACKET

586940
type: SpeciesReference
stoichiometry: 0.06
species: M C18 COLON 0 DASH ACP LBRACKET C RBRACKET

586917
type: SpeciesReference
stoichiometry: 0.022
species: M C14 COLON 0 DASH ACP LBRACKET C RBRACKET

586977
type: SpeciesReference
stoichiometry: 1.0
species: 570198

586952
type: SpeciesReference
stoichiometry: 0.149
species: M C18 COLON 1 LPAREN C9 RPAREN DASH ACP LBRACKET C RBRACKET

R ASPARTASE DASH RXN
type: Reaction
fast: false
name: aspartate ammonia-lyase
is: ASPARTASE-RXN
reversible: false
notes: GENE_ASSOCIATION: ACIAD1744
product: 604692
product: 604704
is: ASPT
reactant: 604680

604692
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

604704
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

604680
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

R TRANS DASH RXN DASH MAL DASH DAACS
type: Reaction
reversible: false
fast: false
reactant: 617754
is: TRANS-RXN-121A
product: 617790
notes: GENE_ASSOCIATION: ACIAD1026 or ACIAD2227 or ACIAD1191 or ACIAD1866
product: 617778
reactant: 617766
name: transport of malate [extraorganism;cytosol](secondary symport) DAACS family

617754
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET E RBRACKET

617790
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

617778
type: SpeciesReference
stoichiometry: 1.0
species: M MAL LBRACKET C RBRACKET

617766
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

589560
type: Reaction
reactant: 589572
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-lactate

589572
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET E RBRACKET

R ARGININE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 582978
fast: false
notes: GENE_ASSOCIATION: ACIAD0164
is: ARGTRS
is: ARGININE--TRNA-LIGASE-RXN
product: 582954
reactant: 582930
product: 582966
name: arginine--trna ligase
reversible: false
reactant: 582918
reactant: 582942

582978
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH ARG DASH TRNAS LBRACKET C RBRACKET

582954
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

582930
type: SpeciesReference
stoichiometry: 1.0
species: M ARG DASH TRNAS LBRACKET C RBRACKET

582966
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

582918
type: SpeciesReference
stoichiometry: 1.0
species: M ARG LBRACKET C RBRACKET

582942
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R KDOTRANS2 DASH RXN
type: Reaction
reversible: false
is: KDOTRANS2-RXN
notes: GENE_ASSOCIATION: ACIAD3479
name: 3-deoxy-d-manno-octulosonic acid transferase
product: 587817
reactant: 587793
fast: false
product: 587829
is: MOAT2
reactant: 587805

587817
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

587793
type: SpeciesReference
stoichiometry: 1.0
species: M CMP DASH KDO LBRACKET C RBRACKET

587829
type: SpeciesReference
stoichiometry: 1.0
species: M KDO2 DASH LIPID DASH IVA LBRACKET C RBRACKET

587805
type: SpeciesReference
stoichiometry: 1.0
species: M KDO DASH LIPID DASH IVA LBRACKET C RBRACKET

M KDO DASH LIPID DASH IVA LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
initial concentration: NaN
has only substance units: false
is: kdolipid4
name: (kdo)-lipid iv(a)
boundary condition: false
initial amount: NaN
is: C06024
is: KDO-LIPID-IVA

583039
type: Reaction
reactant: 583051
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-arginine

583051
type: SpeciesReference
stoichiometry: 1.0
species: M ARG LBRACKET E RBRACKET

M C4 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET
type: Species
boundary condition: false
is: C04618
in compartment: 570138
constant: false
has only substance units: false
initial concentration: NaN
is: 3haACP
initial amount: NaN
name: 3-hydroxybutanoyl-acp

R 6 PERIOD 2 PERIOD 1 PERIOD 34 DASH RXN
type: Reaction
reactant: 616101
product: 616126
reversible: true
product: 616138
notes: GENE_ASSOCIATION: ACIAD1724
is: 6.2.1.34-RXN
reactant: 616113
reactant: 616089
name: trans-feruloyl-coa synthetase
product: 616150
fast: false

616101
type: SpeciesReference
stoichiometry: 1.0
species: M FERULOATE LBRACKET C RBRACKET

616126
type: SpeciesReference
stoichiometry: 1.0
species: M TRANS DASH FERULOYL DASH COA LBRACKET C RBRACKET

M TRANS DASH FERULOYL DASH COA LBRACKET C RBRACKET
type: Species
has only substance units: false
name: trans-feruloyl-coa
initial amount: NaN
is: TRANS-FERULOYL-COA
in compartment: 570138
initial concentration: NaN
boundary condition: false
constant: false
is: C00406

616138
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

616113
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

616089
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

616150
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R ISOCIT DASH CLEAV DASH RXN
type: Reaction
fast: false
reactant: 598501
name: isocitrate lyase
reversible: false
product: 598525
product: 598513
is: ICL
is: ISOCIT-CLEAV-RXN
notes: GENE_ASSOCIATION: ACIAD1084

598501
type: SpeciesReference
stoichiometry: 1.0
species: M THREO DASH D LPAREN S RPAREN DASH ISO DASH CITRATE LBRACKET C RBRACKET

598525
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

598513
type: SpeciesReference
stoichiometry: 1.0
species: M GLYOX LBRACKET C RBRACKET

R TRANS DASH RXN DASH 29A
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ACIAD3460 or ACIAD1011
product: 575371
is: TRANS-RXN-29A
reactant: 575346
reactant: 575359
name: transport of betaine [extraorganism;cytosol](secondary symport)
is: GLYBt2pp
product: 575383
reversible: false

575371
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

575346
type: SpeciesReference
stoichiometry: 1.0
species: M BETAINE LBRACKET E RBRACKET

575359
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

575383
type: SpeciesReference
stoichiometry: 1.0
species: M BETAINE LBRACKET C RBRACKET

R 3 DASH DEHYDROQUINATE DASH SYNTHASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3353
reactant: 612952
name: 3-dehydroquinate synthase
product: 612977
is: DHQS
reversible: false
product: 612965
is: 3-DEHYDROQUINATE-SYNTHASE-RXN
fast: false

612952
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEOXY DASH D DASH ARABINO DASH HEPTULOSONATE DASH 7 DASH P LBRACKET C RBRACKET

612977
type: SpeciesReference
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET C RBRACKET

M DEHYDROQUINATE LBRACKET C RBRACKET
type: Species
is: DEHYDROQUINATE
has only substance units: false
initial amount: NaN
boundary condition: false
initial concentration: NaN
is: C00944
constant: false
in compartment: 570138
is: 3dhq
name: 3-dehydroquinate

612965
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R NADH DASH DEHYDROG DASH A DASH RXN
type: Reaction
reversible: false
reactant: 610304
name: nadh dehydrogenase (ubiquinone)
product: 610328
reactant: 610292
is: NADH-DEHYDROG-A-RXN
product: 610340
notes: GENE_ASSOCIATION: ACIAD0743 and ACIAD0742 and ACIAD0741 and ACIAD0740 and ACIAD0739 and ACIAD0738 and ACIAD0737 and ACIAD0736 and ACIAD0735 and ACIAD0734 and ACIAD0733 and ACIAD0731 and ACIAD0730
fast: false
is: NADH6
product: 610352
reactant: 610316

610304
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

610328
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

610292
type: SpeciesReference
stoichiometry: 5.0
species: M PROTON LBRACKET C RBRACKET

610340
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

610352
type: SpeciesReference
stoichiometry: 4.0
species: M PROTON LBRACKET P RBRACKET

610316
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

R HOMOSERKIN DASH RXN
type: Reaction
product: 609364
is: HSK
is: HOMOSERKIN-RXN
name: homoserine kinase
fast: false
reactant: 609340
reactant: 609328
product: 609352
notes: GENE_ASSOCIATION: ACIAD0834 or ACIAD1457 or ACIAD3403
reversible: true

609364
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

609340
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

609328
type: SpeciesReference
stoichiometry: 1.0
species: M HOMO DASH SER LBRACKET C RBRACKET

609352
type: SpeciesReference
stoichiometry: 1.0
species: M O DASH PHOSPHO DASH L DASH HOMOSERINE LBRACKET C RBRACKET

R C14 COLON 1 LPAREN C5 RPAREN DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
product: 603489
product: 603477
reactant: 603465
notes: GENE_ASSOCIATION: ACIAD1381
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
fast: false
reversible: false
name: 3hydroxyacyl-acp dehydratase (c14:1(c5))

603489
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

603477
type: SpeciesReference
stoichiometry: 1.0
species: 570390

603465
type: SpeciesReference
stoichiometry: 1.0
species: 570222

R C8 COLON 0 DASH CARBOXY DASH COATRANSFERASE DASH RXN
type: Reaction
is: RXNIM-6198
reversible: false
product: 581460
reactant: 581412
product: 581472
notes: GENE_ASSOCIATION: ACIAD1695 and ACIAD1696
name: dicarboxylate acyl coa transferase (c8:0)
product: 581448
reactant: 581436
fast: false
reactant: 581424

581460
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

581412
type: SpeciesReference
stoichiometry: 1.0
species: M SUBERATE LBRACKET C RBRACKET

581472
type: SpeciesReference
stoichiometry: 1.0
species: 571100

581448
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

581436
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

581424
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R TETHYDPICSUCC DASH RXN
type: Reaction
reactant: 581954
product: 581990
fast: false
product: 582002
is: TETHYDPICSUCC-RXN
is: THDPS
reactant: 581978
name: 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase
notes: GENE_ASSOCIATION: ACIAD2599
reactant: 581966
reversible: true

581954
type: SpeciesReference
stoichiometry: 1.0
species: M SUC DASH COA LBRACKET C RBRACKET

581990
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH SUCCINYL DASH 2 DASH AMINO DASH 6 DASH KETOPIMELATE LBRACKET C RBRACKET

582002
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

581978
type: SpeciesReference
stoichiometry: 1.0
species: M DELTA LBRACE 1 RBRACE DASH PIPERIDEINE DASH 2 DASH 6 DASH DICARBOXYLATE LBRACKET C RBRACKET

581966
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R TRANS DASH RXN DASH THR DASH EFLX
type: Reaction
name: transport of l-threonine [cytosol;extraorganism](secondary antiport)
reversible: false
reactant: 617477
product: 617501
is: THRt2pp
product: 617513
notes: GENE_ASSOCIATION: ACIAD0759 or ACIAD2980 or ACIAD3166
fast: false
is: TRANS-RXN-244
reactant: 617489

617477
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

617501
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

617513
type: SpeciesReference
stoichiometry: 1.0
species: M THR LBRACKET E RBRACKET

617489
type: SpeciesReference
stoichiometry: 1.0
species: M THR LBRACKET C RBRACKET

R 4 PERIOD 2 PERIOD 1 PERIOD 101 DASH RXN
type: Reaction
product: 590608
reactant: 590596
reactant: 590584
notes: GENE_ASSOCIATION: ACIAD1726
is: 4.2.1.101-RXN
fast: false
reversible: true
name: trans-feruloyl-coa hydratase

590608
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXY DASH ETCETERA DASH HYDROXYPROPIONYL DASH COA LBRACKET C RBRACKET

590596
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

590584
type: SpeciesReference
stoichiometry: 1.0
species: M TRANS DASH FERULOYL DASH COA LBRACKET C RBRACKET

R TRANS DASH RXN DASH 1 DASH BIS
type: Reaction
product: 587565
reactant: 587553
notes: GENE_ASSOCIATION: ACIAD1800 or ACIAD3593
is: TRANS-RXN-1
fast: false
reversible: true
name: transport of no2- [cytosol;extraorganism](passive)

587565
type: SpeciesReference
stoichiometry: 1.0
species: M NITRITE LBRACKET E RBRACKET

587553
type: SpeciesReference
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET

M CHARGED DASH GLT DASH TRNAS LBRACKET C RBRACKET
type: Species
has only substance units: false
initial concentration: NaN
is: CHARGED-GLT-TRNAS
boundary condition: false
name: charged glutamate trna
constant: false
in compartment: 570138
is: glutrna
initial amount: NaN
is: C02987

M 1 DASH 2 DASH CIS DASH DI DASH OH DASH BENZOATE LBRACKET C RBRACKET
type: Species
is: 1-2-CIS-DI-OH-BENZOATE
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: cis-1,2-dihydroxybenzoate

R C8 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
product: 572843
product: 572819
reactant: 572795
fast: false
product: 572831
name: 3oxoacyl-acp synthase (c8:0)
is: 3OAS80
reversible: false
reactant: 572807
is: 3-OXOACYL-ACP-SYNTH-RXN

572843
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

572819
type: SpeciesReference
stoichiometry: 1.0
species: M C8 COLON 0 DASH 3OXOACP LBRACKET C RBRACKET

572795
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH ACP LBRACKET C RBRACKET

572831
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

572807
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

M CHARGED DASH GLY DASH TRNAS LBRACKET C RBRACKET
type: Species
in compartment: 570138
constant: false
initial amount: NaN
initial concentration: NaN
name: charged glycine trna
boundary condition: false
is: C02412
has only substance units: false
is: glytrna
is: CHARGED-GLY-TRNAS

R RNA DASH SYNTH DASH RXN
type: Reaction
is: DNA-DIRECTED-RNA-POLYMERASE-RXN
name: rna synthesis reaction
reversible: false
product: 583701
reactant: 583640
product: 583688
notes: GENE_ASSOCIATION:
fast: false
reactant: 583628
reactant: 583616
reactant: 583652
product: 583664
product: 583676

583701
type: SpeciesReference
stoichiometry: 0.4
species: M ADP LBRACKET C RBRACKET

583640
type: SpeciesReference
stoichiometry: 0.259
species: M UTP LBRACKET C RBRACKET

583688
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

583628
type: SpeciesReference
stoichiometry: 0.222
species: M GTP LBRACKET C RBRACKET

583616
type: SpeciesReference
stoichiometry: 0.299
species: M CTP LBRACKET C RBRACKET

583652
type: SpeciesReference
stoichiometry: 0.62
species: M ATP LBRACKET C RBRACKET

583664
type: SpeciesReference
stoichiometry: 0.4
species: M PI LBRACKET C RBRACKET

583676
type: SpeciesReference
stoichiometry: 0.319
species: 570847

http://identifiers.org/biomodels.db/MODEL1949107276#R_C10_COLON_0_DASH_CARBOXY3HYDROXYCOA_DASH_DEHYDROGENASE_DASH_RXN
type: Reaction
reactant: 605631
reactant: 605619
product: 605643
reversible: false
product: 605655
notes: GENE_ASSOCIATION: ACIAD1690
fast: false
is: RXNIM-6202
name: dicarboxylate hydroxyacyl-coa dehydrogenase (c10:0)

605631
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

605619
type: SpeciesReference
stoichiometry: 1.0
species: 570150

605643
type: SpeciesReference
stoichiometry: 1.0
species: 570811

605655
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R CYSTEINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD1481
reactant: 592246
is: CYSTRS
is: CYSTEINE--TRNA-LIGASE-RXN
reactant: 592234
product: 592282
product: 592294
product: 592270
reactant: 592258
name: cysteine--trna ligase

592246
type: SpeciesReference
stoichiometry: 1.0
species: M CYS LBRACKET C RBRACKET

592234
type: SpeciesReference
stoichiometry: 1.0
species: M CYS DASH TRNAS LBRACKET C RBRACKET

592282
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

592294
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH CYS DASH TRNAS LBRACKET C RBRACKET

592270
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

592258
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R C12 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
is: HACD5i
reactant: 591560
reversible: false
fast: false
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
product: 591584
reactant: 591548
name: 3oxoacyl-coa thiolase (c10:0)
product: 591572
is: OHACYL-COA-DEHYDROG-RXN

591560
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

591584
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

591548
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

591572
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R PHOSPHASERDECARB DASH RXN
type: Reaction
product: 603525
product: 603513
reactant: 603501
notes: GENE_ASSOCIATION: ACIAD3560
is: PHOSPHASERDECARB-RXN
fast: false
reversible: false
name: phosphatidylserine decarboxylase

603525
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

603513
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH ETHANOLAMINE LBRACKET C RBRACKET

603501
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH SERINE LBRACKET C RBRACKET

R CATAL DASH RXN
type: Reaction
reversible: false
product: 589295
notes: GENE_ASSOCIATION: ACIAD0451
product: 589307
is: CAT
reactant: 589283
is: CATAL-RXN
name: catalase
fast: false

589295
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

589307
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

589283
type: SpeciesReference
stoichiometry: 2.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

581268
type: Reaction
reactant: 581280
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of octadenoate

581280
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 LBRACKET E RBRACKET

R R142 DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2903
reactant: 572916
is: R142-RXN
reactant: 572904
product: 572928
product: 572940
name: 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase
reversible: false
fast: false

572916
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

572904
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 77 LBRACKET C RBRACKET

572928
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 78 LBRACKET C RBRACKET

572940
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R UDPHYDROXYMYRGLUCOSAMNACETYLTRANS DASH RXN
type: Reaction
reversible: true
is: UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN
notes: GENE_ASSOCIATION: ACIAD1380
fast: false
product: 612472
product: 612484
reactant: 612448
reactant: 612460
name: udp-3-o-[3-hydroxylauroyl] glucosamine n-acyltransferase
is: U23GAAT

612472
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

612484
type: SpeciesReference
stoichiometry: 1.0
species: M OH DASH MYRISTOYL LBRACKET C RBRACKET

612448
type: SpeciesReference
stoichiometry: 1.0
species: 570823

612460
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH OHMYR DASH GLUCOSAMINE LBRACKET C RBRACKET

607386
type: Reaction
reactant: 607495
reactant: 607531
reversible: false
reactant: 607398
notes: GENE_ASSOCIATION:
reactant: 607446
reactant: 607519
reactant: 607507
reactant: 607434
reactant: 607422
reactant: 607544
reactant: 607410
name: cofactor assembly
reactant: 607482
fast: false
reactant: 607458
reactant: 607470
product: 607556

607495
type: SpeciesReference
stoichiometry: 0.08
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

607531
type: SpeciesReference
stoichiometry: 0.08
species: M CO DASH A LBRACKET C RBRACKET

607398
type: SpeciesReference
stoichiometry: 0.07
species: M FAD LBRACKET C RBRACKET

607446
type: SpeciesReference
stoichiometry: 0.08
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

607519
type: SpeciesReference
stoichiometry: 0.07
species: M NAD LBRACKET C RBRACKET

607507
type: SpeciesReference
stoichiometry: 0.08
species: M SIROHEME LBRACKET C RBRACKET

M SIROHEME LBRACKET C RBRACKET
type: Species
is: sheme
initial amount: NaN
name: siroheme
boundary condition: false
has only substance units: false
initial concentration: NaN
in compartment: 570138
constant: false
is: SIROHEME
is: C00748

607434
type: SpeciesReference
stoichiometry: 0.08
species: M PROTOHEME LBRACKET C RBRACKET

607422
type: SpeciesReference
stoichiometry: 0.08
species: M UNDECAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET

607544
type: SpeciesReference
stoichiometry: 0.08
species: M THF LBRACKET C RBRACKET

607410
type: SpeciesReference
stoichiometry: 0.07
species: M FMN LBRACKET C RBRACKET

607482
type: SpeciesReference
stoichiometry: 0.07
species: M NADP LBRACKET C RBRACKET

607458
type: SpeciesReference
stoichiometry: 0.08
species: M THIAMINE DASH PYROPHOSPHATE LBRACKET C RBRACKET

607470
type: SpeciesReference
stoichiometry: 0.08
species: 570956

607556
type: SpeciesReference
stoichiometry: 0.61
species: 571232

R MALONYL DASH COA DASH ACP DASH TRANSACYL DASH RXN
type: Reaction
reversible: true
reactant: 591633
reactant: 591645
product: 591669
name: malonyl-coa-acp transacylase
notes: GENE_ASSOCIATION: ACIAD0870 and ACIAD0872
product: 591657
is: MALONYL-COA-ACP-TRANSACYL-RXN
is: MCOATA
fast: false

591633
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH COA LBRACKET C RBRACKET

591645
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

591669
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

591657
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

R DTDPKIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0556
is: NDPK4
product: 600692
reactant: 600680
fast: false
name: dtdp kinase
product: 600704
is: DTDPKIN-RXN
reversible: true
reactant: 600668

600692
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

600680
type: SpeciesReference
stoichiometry: 1.0
species: M TDP LBRACKET C RBRACKET

600704
type: SpeciesReference
stoichiometry: 1.0
species: M TTP LBRACKET C RBRACKET

600668
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

M UDP DASH GLUCURONATE LBRACKET C RBRACKET
type: Species
name: udp-d-glucuronate
initial amount: NaN
boundary condition: false
is: C00167
initial concentration: NaN
in compartment: 570138
has only substance units: false
is: udpglcur
is: UDP-GLUCURONATE
constant: false

591067
type: Reaction
reactant: 591091
reactant: 591103
fast: false
reversible: true
reactant: 591079
notes: GENE_ASSOCIATION:
name: generic free fatty acid assembly
reactant: 591115
product: 591127

591091
type: SpeciesReference
stoichiometry: 0.574
species: 570775

591103
type: SpeciesReference
stoichiometry: 0.09
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

591079
type: SpeciesReference
stoichiometry: 0.28
species: M C16 COLON 0 LBRACKET C RBRACKET

591115
type: SpeciesReference
stoichiometry: 0.056
species: M C14 COLON 0 LBRACKET C RBRACKET

591127
type: SpeciesReference
stoichiometry: 0.2556
species: 571112

R FUMARYLACETOACETASE DASH RXN
type: Reaction
is: FUMARYLACETOACETASE-RXN
name: fumarylacetoacetase
reversible: true
notes: GENE_ASSOCIATION: ACIAD1809
is: FUMAC
reactant: 601041
fast: false
reactant: 601029
product: 601053
product: 601065

601041
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH FUMARYL DASH ACETOACETATE LBRACKET C RBRACKET

601029
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

601053
type: SpeciesReference
stoichiometry: 1.0
species: M FUM LBRACKET C RBRACKET

601065
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH KETOBUTYRATE LBRACKET C RBRACKET

R C14 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
is: ENOYL-COA-HYDRAT-RXN
fast: false
product: 596057
reversible: false
is: ECOAH6
reactant: 596045
reactant: 596033
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
name: enoyl-coa hydratase (c14:0)

596057
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

M C14 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
name: 3-hydroxytetradecanoyl-coa
is: C05260
initial amount: NaN
is: 3htdcoa
boundary condition: false
in compartment: 570138

596045
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596033
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

595574
type: Reaction
reactant: 595586
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-tyrosine

595586
type: SpeciesReference
stoichiometry: 1.0
species: M TYR LBRACKET E RBRACKET

R C16 COLON 1 LPAREN C7 RPAREN DASH COATRANSFERASE DASH RXN
type: Reaction
fast: false
reversible: false
reactant: 581159
reactant: 581183
is: ACYLCOASYN-RXN
product: 581220
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
product: 581195
reactant: 581171
name: acyl coa transferase (c16:1(c7))
product: 581207

581159
type: SpeciesReference
stoichiometry: 1.0
species: 570775

581183
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

581220
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

581195
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

581171
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

581207
type: SpeciesReference
stoichiometry: 1.0
species: 570294

605198
type: Reaction
product: 605222
reactant: 605210
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of octane [extraorganism;cytosol](passive)

605222
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET C RBRACKET

605210
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 148 LBRACKET E RBRACKET

R TRANS DASH RXNIM DASH 5736 DASH BIS
type: Reaction
reversible: false
fast: false
product: 618224
reactant: 618200
product: 618236
reactant: 618212
notes: GENE_ASSOCIATION: ACIAD2541
is: TRANS-RXNIM-5736
name: transport of purine [extraorganism;cytosol](secondary symport)

618224
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

618200
type: SpeciesReference
stoichiometry: 1.0
species: M PURINE LBRACKET E RBRACKET

618236
type: SpeciesReference
stoichiometry: 1.0
species: M PURINE LBRACKET C RBRACKET

M PURINE LBRACKET C RBRACKET
type: Species
has only substance units: false
initial amount: NaN
is: C15587
boundary condition: false
in compartment: 570138
name: purine
initial concentration: NaN
constant: false
is: PURINE

618212
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R C18 COLON 1 LPAREN C9 RPAREN DASH COATRANSFERASE DASH RXN
type: Reaction
fast: false
product: 606185
product: 606197
reactant: 606149
name: acyl coa transferase (c18:1(c9))
reversible: false
is: ACYLCOASYN-RXN
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 606137
reactant: 606161
product: 606173

606185
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

606197
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET

606149
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

606137
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

606161
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

606173
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R DIACYLGLYCEROL DASH O DASH ACYLTRANSFERASE DASH RXN
type: Reaction
reactant: 578224
fast: false
notes: GENE_ASSOCIATION: ACIAD0832
reversible: false
name: diacylglycerol o-acyltransferase
is: DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN
product: 578236
reactant: 578212
product: 578248

578224
type: SpeciesReference
stoichiometry: 1.0
species: 571040

571040
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: ACYL-COA_TAG

578236
type: SpeciesReference
stoichiometry: 1.0
species: M TRIACYLGLYCEROL LBRACKET C RBRACKET

578212
type: SpeciesReference
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET

578248
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

577094
type: Reaction
product: 577142
product: 577130
reactant: 577118
reactant: 577106
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: acyl-acp hydrolase (c16:1(c7))

577142
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

577130
type: SpeciesReference
stoichiometry: 1.0
species: 570775

577118
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

577106
type: SpeciesReference
stoichiometry: 1.0
species: 570559

613206
type: Reaction
reactant: 613219
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-ornithine

613219
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET E RBRACKET

612170
type: Reaction
reversible: true
reactant: 612194
product: 612230
reactant: 612182
notes: GENE_ASSOCIATION: ACIAD3383
product: 612218
name: fatty acyl-coa reductase (c18:1(c9))
fast: false
product: 612206

612194
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

612230
type: SpeciesReference
stoichiometry: 1.0
species: 571220

612182
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 1 LPAREN C9 RPAREN DASH COA LBRACKET C RBRACKET

612218
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

612206
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

R 3 DASH DEHYDROQUINATE DASH DEHYDRATASE DASH RXN
type: Reaction
reactant: 589427
reversible: true
is: DHQTi
name: 3-dehydroquinate dehydratase
product: 589451
notes: GENE_ASSOCIATION: ACIAD1738
is: 3-DEHYDROQUINATE-DEHYDRATASE-RXN
fast: false
product: 589439

589427
type: SpeciesReference
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET C RBRACKET

589451
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

589439
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET C RBRACKET

R RXNIM DASH 6207
type: Reaction
reactant: 576310
fast: false
reactant: 576322
name: salicyl alcohol dehydrogenase
product: 576334
is: RXNIM-6207
notes: GENE_ASSOCIATION: ACIAD1429 or ACIAD1578
product: 576346
reversible: true

576310
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 173 LBRACKET C RBRACKET

576322
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

576334
type: SpeciesReference
stoichiometry: 1.0
species: M SALICYLALDEHYDE LBRACKET C RBRACKET

576346
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

599466
type: Reaction
product: 599514
reactant: 599502
reactant: 599490
reactant: 599478
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: generic fatty acid of wax assembly

599514
type: SpeciesReference
stoichiometry: 1.0
species: 570907

599502
type: SpeciesReference
stoichiometry: 0.445
species: M C18 COLON 1 LPAREN C9 RPAREN LBRACKET C RBRACKET

599490
type: SpeciesReference
stoichiometry: 0.315
species: 570775

599478
type: SpeciesReference
stoichiometry: 0.24
species: M C16 COLON 0 LBRACKET C RBRACKET

M CHARGED DASH GLN DASH TRNAS LBRACKET C RBRACKET
type: Species
initial amount: NaN
initial concentration: NaN
in compartment: 570138
name: charged glutamine trna
is: CHARGED-GLN-TRNAS
boundary condition: false
is: glntrna
is: C02282
constant: false
has only substance units: false

R GUANPRIBOSYLTRAN DASH RXN
type: Reaction
name: guanine phosphoribosyltransferase
is: GUAPRT
product: 593740
fast: false
notes: GENE_ASSOCIATION: ACIAD3669
reactant: 593716
is: GUANPRIBOSYLTRAN-RXN
product: 593753
reactant: 593728
reversible: false

593740
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

593716
type: SpeciesReference
stoichiometry: 1.0
species: M GUANINE LBRACKET C RBRACKET

593753
type: SpeciesReference
stoichiometry: 1.0
species: M GMP LBRACKET C RBRACKET

593728
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

R SULFATE DASH ADENYLYLTRANS DASH RXN
type: Reaction
reactant: 589752
name: sulfate adenylyltransferase
product: 589788
product: 589776
reversible: true
fast: false
notes: GENE_ASSOCIATION: ACIAD1073 and ACIAD1072
reactant: 589764
is: SULFATE-ADENYLYLTRANS-RXN

589752
type: SpeciesReference
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET

589788
type: SpeciesReference
stoichiometry: 1.0
species: M APS LBRACKET C RBRACKET

589776
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

589764
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R C16 COLON 0 DASH COA DASH DEHYDROGENASE DASH RXN
type: Reaction
name: acyl-coa dehydrogenase (c16:0)
reactant: 613242
notes: GENE_ASSOCIATION: ACIAD0452 or ACIAD3262 or ACIAD2537 or ACIAD2277 or ACIAD1886 or ACIAD1821 or ACIAD1819 or ACIAD1700 or ACIAD1693 or ACIAD1607 or ACIAD1413 or ACIAD0623 or ACIAD0624 or ACIAD0428 or ACIAD0427 or ACIAD1723 or ACIAD2226 or ACIAD3191 or ACIAD1566
reactant: 613231
fast: false
product: 613266
product: 613254
is: ACOAD7f
reversible: false
is: ACYLCOADEHYDROG-RXN

613242
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH COA LBRACKET C RBRACKET

613231
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

613266
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

613254
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

M C10 COLON 0 DASH ACP LBRACKET C RBRACKET
type: Species
initial concentration: NaN
has only substance units: false
constant: false
is: dcaACP
name: decanoyl-acp
is: C05755
boundary condition: false
initial amount: NaN
in compartment: 570138

R DHBDEHYD DASH RXN
type: Reaction
product: 599454
reversible: false
is: DHBDEHYD-RXN
product: 599442
notes: GENE_ASSOCIATION: ACIAD2774
reactant: 599418
is: DHBD
fast: false
name: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
reactant: 599430

599454
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH 3 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET

M 2 DASH 3 DASH DIHYDROXYBENZOATE LBRACKET C RBRACKET
type: Species
boundary condition: false
constant: false
name: 2,3-dihydroxybenzoate
initial concentration: NaN
is: 2-3-DIHYDROXYBENZOATE
is: C00196
initial amount: NaN
is: 23dhb
has only substance units: false
in compartment: 570138

599442
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

599418
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRO DASH DIOH DASH BENZOATE LBRACKET C RBRACKET

M DIHYDRO DASH DIOH DASH BENZOATE LBRACKET C RBRACKET
type: Species
constant: false
in compartment: 570138
is: 23ddhb
initial concentration: NaN
is: DIHYDRO-DIOH-BENZOATE
initial amount: NaN
boundary condition: false
is: C04171
has only substance units: false
name: 2,3-dihydro-2,3-dihydroxybenzoate

599430
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

R DIAMINOPIMDECARB DASH RXN
type: Reaction
product: 603561
fast: false
notes: GENE_ASSOCIATION: ACIAD2660
name: diaminopimelate decarboxylase
reversible: false
reactant: 603537
product: 603549
is: DAPDC
is: DIAMINOPIMDECARB-RXN

603561
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

603537
type: SpeciesReference
stoichiometry: 1.0
species: M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET

603549
type: SpeciesReference
stoichiometry: 1.0
species: M LYS LBRACKET C RBRACKET

570619
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: VITAMIN_K_{2}

R GLUTAMATE DASH N DASH ACETYLTRANSFERASE DASH RXN
type: Reaction
name: glutamate n-acetyltransferase
fast: false
notes: GENE_ASSOCIATION: ACIAD0650
reactant: 584605
is: ACODA
reactant: 584593
product: 584629
product: 584617
is: GLUTAMATE-N-ACETYLTRANSFERASE-RXN
reversible: false

584605
type: SpeciesReference
stoichiometry: 1.0
species: M N DASH ALPHA DASH ACETYLORNITHINE LBRACKET C RBRACKET

584593
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

584629
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET

584617
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH GLU LBRACKET C RBRACKET

R RIBULP3EPIM DASH RXN
type: Reaction
product: 611194
reactant: 611182
notes: GENE_ASSOCIATION: ACIAD0685
is: RIBULP3EPIM-RXN
is: RPE
fast: false
reversible: true
name: ribulose phosphate 3-epimerase

611194
type: SpeciesReference
stoichiometry: 1.0
species: M XYLULOSE DASH 5 DASH PHOSPHATE LBRACKET C RBRACKET

611182
type: SpeciesReference
stoichiometry: 1.0
species: M RIBULOSE DASH 5P LBRACKET C RBRACKET

614756
type: Reaction
product: 614780
reactant: 614768
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of butanoate [extraorganism;cytosol](passive)

614780
type: SpeciesReference
stoichiometry: 1.0
species: 570739

570739
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570138
name: BUTYRIC_ACID

614768
type: SpeciesReference
stoichiometry: 1.0
species: 570438

570438
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 570126
name: BUTYRIC_ACID

R ADENPRIBOSYLTRAN DASH RXN
type: Reaction
name: adenine phosphoribosyltransferase
is: ADPT
product: 604259
notes: GENE_ASSOCIATION: ACIAD3164
product: 604271
reactant: 604247
is: ADENPRIBOSYLTRAN-RXN
reversible: false
reactant: 604235
fast: false

604259
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

604271
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

604247
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

604235
type: SpeciesReference
stoichiometry: 1.0
species: M ADENINE LBRACKET C RBRACKET

R PHOSPHAGLYPSYN DASH RXN
type: Reaction
name: cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
product: 573363
fast: false
notes: GENE_ASSOCIATION: ACIAD0342
reactant: 573339
reversible: false
product: 573375
reactant: 573351
is: PHOSPHAGLYPSYN-RXN

573363
type: SpeciesReference
stoichiometry: 1.0
species: M CMP LBRACKET C RBRACKET

573339
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET

573375
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH 1 DASH PHOSPHATIDYL DASH GLYCEROL DASH P LBRACKET C RBRACKET

573351
type: SpeciesReference
stoichiometry: 1.0
species: M CDPDIACYLGLYCEROL LBRACKET C RBRACKET

R TRANS DASH RXN DASH 105
type: Reaction
reactant: 615560
reversible: true
notes: GENE_ASSOCIATION: ACIAD0106
is: TRANS-RXN-105
reactant: 615548
is: GLYCLTt2rpp
fast: false
name: transport of glycolate [extraorganism;cytosol](secondary symport)
product: 615584
product: 615572

615560
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

615548
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET E RBRACKET

615584
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET

615572
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R C6 COLON 2 LPAREN c2 COMMA c4 RPAREN DASH COATRANSFERASE DASH RXN
type: Reaction
reactant: 604584
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
is: ACYLCOASYN-RXN
product: 604620
reactant: 604572
reversible: false
product: 604596
reactant: 604560
name: acyl coa transferase (c6:2(c2,c4))
product: 604608
fast: false

604584
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

604620
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

604572
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

604596
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

604560
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 2 LPAREN C2 COMMA C4 RPAREN LBRACKET C RBRACKET

604608
type: SpeciesReference
stoichiometry: 1.0
species: 570655

R METHIONINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 574986
product: 574974
reactant: 574926
reactant: 574950
fast: false
is: METTRS
name: methionine--trna ligase
reversible: false
reactant: 574938
is: METHIONINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD0768
product: 574962

574986
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

574974
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET

574926
type: SpeciesReference
stoichiometry: 1.0
species: M MET LBRACKET C RBRACKET

574950
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

574938
type: SpeciesReference
stoichiometry: 1.0
species: M MET DASH TRNAS LBRACKET C RBRACKET

M MET DASH TRNAS LBRACKET C RBRACKET
type: Species
boundary condition: false
in compartment: 570138
is: trnamet
name: methionine trna
constant: false
has only substance units: false
is: MET-TRNAS
is: C01647
initial concentration: NaN
initial amount: NaN

574962
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

R C18 COLON 1 LPAREN C9 RPAREN DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
fast: false
reactant: 600452
product: 600476
reversible: false
name: hydroxyacyl-coa dehydrogenase (c18:1(c9))
product: 600464
is: OHACYL-COA-DEHYDROG-RXN
reactant: 600440

600452
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

600476
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

600464
type: SpeciesReference
stoichiometry: 1.0
species: 570330

600440
type: SpeciesReference
stoichiometry: 1.0
species: 571016

R NICOTINATEPRIBOSYLTRANS DASH RXN
type: Reaction
reversible: false
product: 605018
notes: GENE_ASSOCIATION: ACIAD3562
product: 605030
reactant: 605006
reactant: 604994
reactant: 604982
product: 605054
product: 605042
is: NICOTINATEPRIBOSYLTRANS-RXN
reactant: 604970
name: nicotinate phosphoribosyltransferase
fast: false
is: NAMNPP

605018
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

605030
type: SpeciesReference
stoichiometry: 1.0
species: 571064

605006
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

604994
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

604982
type: SpeciesReference
stoichiometry: 1.0
species: M NIACINE LBRACKET C RBRACKET

605054
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

605042
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

604970
type: SpeciesReference
stoichiometry: 1.0
species: M PRPP LBRACKET C RBRACKET

593765
type: Reaction
reactant: 593777
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of pentanoate

593777
type: SpeciesReference
stoichiometry: 1.0
species: M C5 COLON 0 LBRACKET E RBRACKET

R ACETYL DASH COA DASH ACETYLTRANSFER DASH RXN
type: Reaction
is: ACACT1r
reversible: true
notes: GENE_ASSOCIATION: ACIAD2516 or ACIAD0694
reactant: 575781
is: ACETYL-COA-ACETYLTRANSFER-RXN
fast: false
product: 575793
reactant: 575769
name: acetyl-coa c-acetyltransferase

575781
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

575793
type: SpeciesReference
stoichiometry: 2.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

575769
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOACETYL DASH COA LBRACKET C RBRACKET

R UDP DASH NACMURALGLDAPLIG DASH RXN
type: Reaction
product: 572471
notes: GENE_ASSOCIATION: ACIAD3365
is: UAAGDS
reactant: 572447
product: 572483
is: UDP-NACMURALGLDAPLIG-RXN
name: udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
reactant: 572423
reversible: false
product: 572459
fast: false
reactant: 572435

572471
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH AAGM DASH DIAMINOHEPTANEDIOATE LBRACKET C RBRACKET

572447
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

572483
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

572423
type: SpeciesReference
stoichiometry: 1.0
species: M MESO DASH DIAMINOPIMELATE LBRACKET C RBRACKET

572459
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

572435
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH AA DASH GLUTAMATE LBRACKET C RBRACKET

M UDP DASH AA DASH GLUTAMATE LBRACKET C RBRACKET
type: Species
is: UDP-AA-GLUTAMATE
is: uamag
in compartment: 570138
initial concentration: NaN
initial amount: NaN
constant: false
is: C00692
name: udp-n-acetylmuramoyl-l-alanyl-d-glutamate
boundary condition: false
has only substance units: false

R TRANS DASH RXNIM DASH 5805
type: Reaction
name: transport of benzoate [periplasm;cytosol](secondary symport) reversible
reversible: true
reactant: 604716
product: 604752
fast: false
reactant: 604728
product: 604740
is: TRANS-RXNIM-5805
notes: GENE_ASSOCIATION: ACIAD1434 or ACIAD1815

604716
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

604752
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

604728
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET P RBRACKET

604740
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET

R TRANS DASH RXN DASH CARBON DASH DIOXIDE
type: Reaction
product: 613943
reactant: 613931
notes: GENE_ASSOCIATION:
is: CO2tpp
fast: false
reversible: true
name: transport of co2 [extraorganism;cytosol](passive)

613943
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

613931
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET E RBRACKET

R PABASYN DASH RXN
type: Reaction
product: 618032
name: 4-amino-4-deoxychorismate synthase
fast: false
reversible: true
notes: GENE_ASSOCIATION: ACIAD0665 and ACIAD2461
reactant: 617996
product: 618020
is: PABASYN-RXN
is: ADCS
reactant: 618008

618032
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH 4 DASH DEOXYCHORISMATE LBRACKET C RBRACKET

617996
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

618020
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

618008
type: SpeciesReference
stoichiometry: 1.0
species: M CHORISMATE LBRACKET C RBRACKET

616839
type: Reaction
reactant: 616851
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethanol-amine

616851
type: SpeciesReference
stoichiometry: 1.0
species: M ETHANOL DASH AMINE LBRACKET E RBRACKET

R C6 COLON 0 DASH CARBOXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
name: dicarboxylate acyl-coa dehydrogenase (c6:0)
product: 614366
reversible: false
reactant: 614338
is: RXNIM-6199
product: 614379
fast: false
notes: GENE_ASSOCIATION: ACIAD1693
reactant: 614352

614366
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

614338
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH CARBOXYCOA LBRACKET C RBRACKET

614379
type: SpeciesReference
stoichiometry: 1.0
species: M TRANS DASH 23 DASH DEHYDROADIPYL DASH COA LBRACKET C RBRACKET

614352
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

R C14 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 573242
fast: false
product: 573266
product: 573279
is: HACD6i
name: hydroxyacyl-coa dehydrogenase (c14:0)
reversible: false
reactant: 573254
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
is: OHACYL-COA-DEHYDROG-RXN

573242
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

573266
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

573279
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

573254
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

R RXN0 DASH 311
type: Reaction
notes: GENE_ASSOCIATION: ACIAD2755
product: 588935
reactant: 588923
reactant: 588911
fast: false
reversible: true
is: MICITD
name: methyl-cis-aconitic acid hydratase
is: RXN0-311

588935
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 618 LBRACKET C RBRACKET

588923
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

588911
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 1136 LBRACKET C RBRACKET

582846
type: Reaction
reactant: 582858
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of d-methionine

582858
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 218 LBRACKET E RBRACKET

R ISOCHORMAT DASH RXN
type: Reaction
fast: false
name: isochorismatase
product: 582508
reversible: true
reactant: 582484
reactant: 582472
product: 582496
is: ISOCHORMAT-RXN
is: ICHORT
notes: GENE_ASSOCIATION: ACIAD0028 or ACIAD3473 or ACIAD2775

582508
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

582484
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

582472
type: SpeciesReference
stoichiometry: 1.0
species: M ISOCHORISMATE LBRACKET C RBRACKET

582496
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDRO DASH DIOH DASH BENZOATE LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5803
type: Reaction
reactant: 600969
notes: GENE_ASSOCIATION: ACIAD1440 or ACIAD1982
product: 600981
reversible: false
reactant: 600957
product: 600993
fast: false
is: TRANS-RXNIM-5803
name: transport of benzoate [periplasm;cytosol](secondary symport) irreversible

600969
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET P RBRACKET

600981
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET

600957
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

600993
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

574782
type: Reaction
product: 574806
reactant: 574794
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of l-glutamine [extraorganism;cytosol](passive)

574806
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

574794
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET E RBRACKET

591994
type: Reaction
product: 592018
reactant: 592006
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of glycolate [cytosol;extraorganism](passive)

592018
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET E RBRACKET

592006
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCOLLATE LBRACKET C RBRACKET

R DTMPKI DASH RXN
type: Reaction
name: dtmp kinase
reactant: 597212
is: DTMPKI-RXN
reactant: 597224
reversible: true
is: DTMPK
fast: false
product: 597248
notes: GENE_ASSOCIATION: ACIAD2588
product: 597236

597212
type: SpeciesReference
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET

597224
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

597248
type: SpeciesReference
stoichiometry: 1.0
species: M TDP LBRACKET C RBRACKET

597236
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

590717
type: Reaction
product: 590741
reactant: 590729
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of acetate [extraorganism;cytosol](passive)

590741
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

590729
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET E RBRACKET

R CHLOROGENATE DASH HYDROLASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD1720
product: 589067
product: 589079
fast: false
reactant: 589055
name: chlorogenate hydrolase
reversible: true
is: CHLOROGENATE-HYDROLASE-RXN
reactant: 589043

589067
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET P RBRACKET

589079
type: SpeciesReference
stoichiometry: 1.0
species: M QUINATE LBRACKET P RBRACKET

589055
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET

589043
type: SpeciesReference
stoichiometry: 1.0
species: M CHLOROGENATE LBRACKET P RBRACKET

R PGLYCDEHYDROG DASH RXN
type: Reaction
reversible: true
reactant: 618550
fast: false
notes: GENE_ASSOCIATION: ACIAD3302
is: PGCD
is: PGLYCDEHYDROG-RXN
reactant: 618538
product: 618562
product: 618574
name: phosphoglycerate dehydrogenase

618550
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

618538
type: SpeciesReference
stoichiometry: 1.0
species: M G3P LBRACKET C RBRACKET

618562
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH P DASH HYDROXYPYRUVATE LBRACKET C RBRACKET

618574
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R GLYCEROL DASH KIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0930
reactant: 617031
product: 617067
fast: false
is: GLYCEROL-KIN-RXN
reversible: false
product: 617055
reactant: 617043
name: glycerol kinase
is: GLYK

617031
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL LBRACKET C RBRACKET

617067
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

617055
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET

617043
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

601501
type: Reaction
product: 601525
reactant: 601513
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of gluconate [extraorganism;cytosol](passive)

601525
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET C RBRACKET

601513
type: SpeciesReference
stoichiometry: 1.0
species: M GLUCONATE LBRACKET E RBRACKET

R UTP DASH PYROPHOSPHATASE DASH RXN
type: Reaction
name: utp pyrophosphorylase
reactant: 595720
reversible: false
reactant: 595732
product: 595744
notes: GENE_ASSOCIATION: ACIAD3065
is: NTPP8
fast: false
product: 595756

595720
type: SpeciesReference
stoichiometry: 1.0
species: M UTP LBRACKET C RBRACKET

595732
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

595744
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

595756
type: SpeciesReference
stoichiometry: 1.0
species: M UMP LBRACKET C RBRACKET

R RXNIM DASH 6206
type: Reaction
reactant: 576358
name: ethylsalicylate esterase
reversible: false
is: RXNIM-6206
product: 576394
product: 576382
reactant: 576370
fast: false
notes: GENE_ASSOCIATION: ACIAD1426

576358
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6112 LBRACKET C RBRACKET

576394
type: SpeciesReference
stoichiometry: 1.0
species: M ETOH LBRACKET C RBRACKET

576382
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET

576370
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R PYRUVDEH DASH RXN
type: Reaction
is: PDH
reactant: 614418
is: PYRUVDEH-RXN
notes: GENE_ASSOCIATION: ACIAD3507 and ACIAD3506 and ACIAD2874
name: pyruvate dehydrogenase
reversible: false
product: 614457
fast: false
reactant: 614444
product: 614470
reactant: 614431
product: 614483

614418
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

614457
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

614444
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

614470
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

614431
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

614483
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

R RXN DASH 2881
type: Reaction
name: formaldehyde thf binding
notes: GENE_ASSOCIATION: SPONT SPONTANEOUS: TRUE
reactant: 609800
reactant: 609812
reversible: false
fast: false
is: RXN-2881
product: 609824
product: 609836

609800
type: SpeciesReference
stoichiometry: 1.0
species: M FORMALDEHYDE LBRACKET C RBRACKET

609812
type: SpeciesReference
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET

609824
type: SpeciesReference
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET

609836
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R 2 DASH METHYLCITRATE DASH SYNTHASE DASH RXN
type: Reaction
product: 605703
name: 2-methylcitrate synthase
is: MCITS
reactant: 605679
reactant: 605667
reactant: 605691
product: 605716
notes: GENE_ASSOCIATION: ACIAD2756
reversible: false
fast: false
is: 2-METHYLCITRATE-SYNTHASE-RXN

605703
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

605679
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONYL DASH COA LBRACKET C RBRACKET

605667
type: SpeciesReference
stoichiometry: 1.0
species: 570883

605691
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

605716
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 622 LBRACKET C RBRACKET

R ACONITATEHYDR DASH RXN
type: Reaction
fast: false
reversible: true
is: ACONITATEHYDR-RXN
reactant: 594828
name: aconitase (isocitrate hydro-lyase)
is: ACONTb
notes: GENE_ASSOCIATION: ACIAD3090 or ACIAD2395 or ACIAD2755
reactant: 594816
product: 594840

594828
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594816
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH ACONITATE LBRACKET C RBRACKET

594840
type: SpeciesReference
stoichiometry: 1.0
species: M THREO DASH D LPAREN S RPAREN DASH ISO DASH CITRATE LBRACKET C RBRACKET

R GLUTAMINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 586326
is: GLNTRS
reactant: 586290
name: glutamine--trna ligase
reactant: 586302
product: 586314
reactant: 586278
reversible: false
fast: false
product: 586338
is: GLUTAMINE--TRNA-LIGASE-RXN
notes: GENE_ASSOCIATION: ACIAD1920

586326
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH GLN DASH TRNAS LBRACKET C RBRACKET

586290
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

586302
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

586314
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

586278
type: SpeciesReference
stoichiometry: 1.0
species: M GLN DASH TRNAS LBRACKET C RBRACKET

M GLN DASH TRNAS LBRACKET C RBRACKET
type: Species
is: C01640
has only substance units: false
in compartment: 570138
initial amount: NaN
is: GLN-TRNAS
constant: false
boundary condition: false
is: trnagln
initial concentration: NaN
name: glutamine trna

586338
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R ADENYLYLSULFATE DASH REDUCTASE DASH RXN
type: Reaction
name: adenylylsulfate reductase
product: 602334
product: 602346
is: ADENYLYLSULFATE-REDUCTASE-RXN
reactant: 602298
fast: false
reversible: false
product: 602322
reactant: 602310
notes: GENE_ASSOCIATION: ACIAD0833

602334
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET

602346
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

602298
type: SpeciesReference
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

602322
type: SpeciesReference
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

602310
type: SpeciesReference
stoichiometry: 1.0
species: M APS LBRACKET C RBRACKET

589091
type: Reaction
reactant: 589103
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of quinate

589103
type: SpeciesReference
stoichiometry: 1.0
species: M QUINATE LBRACKET E RBRACKET

R RXN DASH 7913
type: Reaction
is: CYTK2
product: 594539
fast: false
reversible: false
name: dcmp kinase
is: RXN-7913
reactant: 594503
notes: GENE_ASSOCIATION: ACIAD2348
reactant: 594515
product: 594527

594539
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

594503
type: SpeciesReference
stoichiometry: 1.0
species: M DCMP LBRACKET C RBRACKET

594515
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

594527
type: SpeciesReference
stoichiometry: 1.0
species: M DCDP LBRACKET C RBRACKET

R THYMIDYLATE DASH 5 APOST DASH PHOSPHATASE DASH RXN
type: Reaction
reactant: 580638
notes: GENE_ASSOCIATION: ACIAD0015 or ACIAD1227
reactant: 580626
reversible: false
product: 580662
name: dtmp nucleotidase
fast: false
is: |THYMIDYLATE-5'-PHOSPHATASE-RXN|
product: 580650
is: NTD5

580638
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580626
type: SpeciesReference
stoichiometry: 1.0
species: M TMP LBRACKET C RBRACKET

580662
type: SpeciesReference
stoichiometry: 1.0
species: M THYMIDINE LBRACKET C RBRACKET

580650
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

582786
type: Reaction
product: 582810
reactant: 582798
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of pyruvate [extraorganism;cytosol](passive)

582810
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

582798
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET E RBRACKET

R ADPREDUCT DASH RXN
type: Reaction
product: 614972
product: 614984
is: RNDR1
is: ADPREDUCT-RXN
reactant: 614948
name: adp reductase
reactant: 614936
fast: false
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722
reversible: false
product: 614960

614972
type: SpeciesReference
stoichiometry: 1.0
species: M DADP LBRACKET C RBRACKET

614984
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

614948
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

614936
type: SpeciesReference
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

614960
type: SpeciesReference
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

R C4 COLON 0 DASH 2ENOYLACP DASH REDUCTASE DASH RXN
type: Reaction
product: 582050
name: 2enoyl-acp reductase (c4:0)
is: EAR40x
reactant: 582014
product: 582038
is: ENOYL-ACP-REDUCT-NADH-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD3116
reactant: 582026
reversible: false

582050
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

582014
type: SpeciesReference
stoichiometry: 1.0
species: M C4 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

582038
type: SpeciesReference
stoichiometry: 1.0
species: M C4 COLON 0 DASH ACP LBRACKET C RBRACKET

582026
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

588190
type: Reaction
reactant: 588202
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 2,3-butanediol

588202
type: SpeciesReference
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET E RBRACKET

R C6 COLON 0 DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
is: KAT2
reversible: true
reactant: 609087
reactant: 609099
is: KETOACYLCOATHIOL-RXN
fast: false
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
name: 3oxoacyl-coa thiolase (c6:0)
product: 609111
product: 609123

609087
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

609099
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

609111
type: SpeciesReference
stoichiometry: 1.0
species: M BUTYRYL DASH COA LBRACKET C RBRACKET

609123
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

R GDPREDUCT DASH RXN
type: Reaction
reactant: 618344
fast: false
product: 618368
product: 618356
product: 618381
name: gdp reductase
reactant: 618332
is: GDPREDUCT-RXN
reversible: true
is: RNDR2
notes: GENE_ASSOCIATION: ACIAD0724 and ACIAD0722

618344
type: SpeciesReference
stoichiometry: 1.0
species: M RED DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

618368
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

618356
type: SpeciesReference
stoichiometry: 1.0
species: M OX DASH THIOREDOXIN DASH MONOMER LBRACKET C RBRACKET

618381
type: SpeciesReference
stoichiometry: 1.0
species: M DGDP LBRACKET C RBRACKET

618332
type: SpeciesReference
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET

R ADENOSYLHOMOCYSTEINE DASH NUCLEOSIDASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0773
name: adenosylhomocysteine nucleosidase
reversible: true
product: 610112
reactant: 610100
is: AHCYSNS
fast: false
reactant: 610088
is: ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN
product: 610124

610112
type: SpeciesReference
stoichiometry: 1.0
species: M ADENINE LBRACKET C RBRACKET

610100
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

610088
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET

610124
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 561 LBRACKET C RBRACKET

R ADDALT DASH RXN
type: Reaction
product: 594297
notes: GENE_ASSOCIATION: ACIAD1245
fast: false
reactant: 594273
is: ADDALT-RXN
is: DADA
reversible: false
reactant: 594260
product: 594285
name: deoxyadenosine deaminase

594297
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYINOSINE LBRACKET C RBRACKET

594273
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYADENOSINE LBRACKET C RBRACKET

594260
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

594285
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

R H2PTEROATESYNTH DASH RXN
type: Reaction
product: 591211
notes: GENE_ASSOCIATION: ACIAD2852
fast: false
reversible: false
is: H2PTEROATESYNTH-RXN
reactant: 591199
name: dihydropteroate synthase
is: DHPS2
product: 591223
reactant: 591187

591211
type: SpeciesReference
stoichiometry: 1.0
species: M 7 COMMA 8 DASH DIHYDROPTEROATE LBRACKET C RBRACKET

591199
type: SpeciesReference
stoichiometry: 1.0
species: M P DASH AMINO DASH BENZOATE LBRACKET C RBRACKET

591223
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

591187
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROPTERIN DASH CH2OH DASH PP LBRACKET C RBRACKET

571714
type: Reaction
product: 571762
product: 571750
reactant: 571738
reactant: 571726
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: long chain aldehyde reductase (c16:1(c7))

571762
type: SpeciesReference
stoichiometry: 1.0
species: 570378

571750
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

571738
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

571726
type: SpeciesReference
stoichiometry: 1.0
species: 570980

R DGTPTRIPHYDRO DASH RXN
type: Reaction
name: deoxyguanosinetriphosphate triphosphohydrolase
reactant: 574650
reactant: 574638
product: 574662
notes: GENE_ASSOCIATION: ACIAD2613
is: DGTPTRIPHYDRO-RXN
fast: false
product: 574674
reversible: false
is: NTPTP1

574650
type: SpeciesReference
stoichiometry: 1.0
species: M DGTP LBRACKET C RBRACKET

574638
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

574662
type: SpeciesReference
stoichiometry: 1.0
species: M P3I LBRACKET C RBRACKET

M P3I LBRACKET C RBRACKET
type: Species
name: pppi
is: C03279
constant: false
initial amount: NaN
has only substance units: false
is: P3I
in compartment: 570138
is: pppi
boundary condition: false
initial concentration: NaN

574674
type: SpeciesReference
stoichiometry: 1.0
species: M DEOXYGUANOSINE LBRACKET C RBRACKET

R PREPHENATEDEHYDRAT DASH RXN
type: Reaction
product: 597894
notes: GENE_ASSOCIATION: ACIAD2223
reactant: 597868
is: PREPHENATEDEHYDRAT-RXN
name: prephenate dehydratase
reversible: false
is: PPNDH
fast: false
product: 597907
product: 597881

597894
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

597868
type: SpeciesReference
stoichiometry: 1.0
species: M PREPHENATE LBRACKET C RBRACKET

597907
type: SpeciesReference
stoichiometry: 1.0
species: M PHENYL DASH PYRUVATE LBRACKET C RBRACKET

597881
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

R TRANS DASH RXN DASH 104 DASH BIS
type: Reaction
name: transport of d-lactate [extraorganism;cytosol](secondary symport)
notes: GENE_ASSOCIATION: ACIAD0106
fast: false
reactant: 613580
reactant: 613567
is: D-LACt2pp
product: 613604
product: 613592
reversible: true
is: TRANS-RXNIM-5908

613580
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

613567
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET E RBRACKET

613604
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

613592
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH LACTATE LBRACKET C RBRACKET

R SIROHEME DASH FERROCHELAT DASH RXN
type: Reaction
reversible: false
is: SIROHEME-FERROCHELAT-RXN
product: 581653
reactant: 581640
notes: GENE_ASSOCIATION: ACIAD2934
fast: false
is: SHCHF
product: 581665
reactant: 581628
name: sirohydrochlorin ferrochelatase

581653
type: SpeciesReference
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET

581640
type: SpeciesReference
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET

581665
type: SpeciesReference
stoichiometry: 1.0
species: M SIROHEME LBRACKET C RBRACKET

581628
type: SpeciesReference
stoichiometry: 1.0
species: M SIROHYDROCHLORIN LBRACKET C RBRACKET

R DTDPDEHYRHAMREDUCT DASH RXN
type: Reaction
reversible: true
reactant: 574590
product: 574626
name: dtdp-4-dehydrorhamnose reductase
fast: false
is: TDPDRR
is: DTDPDEHYRHAMREDUCT-RXN
reactant: 574602
product: 574614
notes: GENE_ASSOCIATION: ACIAD0078

574590
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

574626
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

574602
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH DEOH DASH DEOXY DASH MANNOSE LBRACKET C RBRACKET

574614
type: SpeciesReference
stoichiometry: 1.0
species: M DTDP DASH RHAMNOSE LBRACKET C RBRACKET

R TRANS DASH RXN DASH SHIKIMATE
type: Reaction
product: 580141
reactant: 580128
notes: GENE_ASSOCIATION: ACIAD1715 or ACIAD2984
is: RXNIM-6197
is: SKMtex
fast: false
reversible: true
name: transport of shikimate [extraorganism;periplasm](passive)

580141
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET P RBRACKET

580128
type: SpeciesReference
stoichiometry: 1.0
species: M SHIKIMATE LBRACKET E RBRACKET

M SHIKIMATE LBRACKET E RBRACKET
type: Species
initial amount: NaN
in compartment: 570126
constant: false
is: skm
is: C00493
boundary condition: false
is: SHIKIMATE
has only substance units: false
name: shikimate
initial concentration: NaN

R BENZOATE DASH CIS DASH DIOL DASH DEHYDROGENASE DASH RXN
type: Reaction
is: BENZOATE-CIS-DIOL-DEHYDROGENASE-RXN
product: 598621
reactant: 598597
name: cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase
reactant: 598585
product: 598633
reversible: false
product: 598609
notes: GENE_ASSOCIATION: ACIAD1439
fast: false

598621
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

598597
type: SpeciesReference
stoichiometry: 1.0
species: M 1 DASH 2 DASH CIS DASH DI DASH OH DASH BENZOATE LBRACKET C RBRACKET

598585
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

598633
type: SpeciesReference
stoichiometry: 1.0
species: M CATECHOL LBRACKET C RBRACKET

598609
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R 6 PERIOD 3 PERIOD 5 PERIOD 6 DASH RXN
type: Reaction
reactant: 590825
reactant: 590837
is: 6.3.5.6-RXN
fast: false
product: 590861
product: 590885
product: 590873
notes: GENE_ASSOCIATION: ACIAD0822 and ACIAD0823 and ACIAD0824
reversible: false
product: 590897
reactant: 590849
name: asparaginyl-trna synthetase (glutamine-hydrolyzing)

590825
type: SpeciesReference
stoichiometry: 1.0
species: M ASPARTYL DASH TRNAASN LBRACKET C RBRACKET

590837
type: SpeciesReference
stoichiometry: 1.0
species: M GLN LBRACKET C RBRACKET

590861
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

590885
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

590873
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

590897
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH ASN DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH ASN DASH TRNAS LBRACKET C RBRACKET
type: Species
is: CHARGED-ASN-TRNAS
in compartment: 570138
is: C03402
name: charged asparagine trna
initial concentration: NaN
initial amount: NaN
has only substance units: false
constant: false
boundary condition: false
is: asntrna

590849
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

584521
type: Reaction
reactant: 584533
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of lactate

584533
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH LACTATE LBRACKET E RBRACKET

R TRANS DASH RXN DASH TRP
type: Reaction
reversible: true
name: transport of l-tryptophan [extraorganism;cytosol](secondary symport)
fast: false
reactant: 591343
reactant: 591331
product: 591367
is: TRANS-RXNIM-5920
notes: GENE_ASSOCIATION: ACIAD1343 or ACIAD2969
product: 591355
is: TRPt2rpp

591343
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

591331
type: SpeciesReference
stoichiometry: 1.0
species: M TRP LBRACKET E RBRACKET

591367
type: SpeciesReference
stoichiometry: 1.0
species: M TRP LBRACKET C RBRACKET

591355
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R C8 COLON 0 DASH CARBOXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 617344
notes: GENE_ASSOCIATION: ACIAD1693
reversible: false
fast: false
reactant: 617332
name: dicarboxylate acyl-coa dehydrogenase (c8:0)
product: 617368
is: RXNIM-6199
product: 617356

617344
type: SpeciesReference
stoichiometry: 1.0
species: 571100

617332
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

617368
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

617356
type: SpeciesReference
stoichiometry: 1.0
species: 570246

R SPONTPRO DASH RXN
type: Reaction
is: SPONTPRO-RXN
reactant: 577575
product: 577599
name: l-glutamate 5-semialdehyde dehydratase
is: G5SADs
notes: GENE_ASSOCIATION: SPONT SPONTANEOUS: TRUE
reversible: false
fast: false
product: 577587

577575
type: SpeciesReference
stoichiometry: 1.0
species: 570944

577599
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

577587
type: SpeciesReference
stoichiometry: 1.0
species: 571196

618128
type: Reaction
reactant: 618140
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of hexadecanoate

618140
type: SpeciesReference
stoichiometry: 1.0
species: M C16 COLON 0 LBRACKET E RBRACKET

602358
type: Reaction
product: 602382
reactant: 602370
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of so3-2 [cytosol;extraorganism](passive)

602382
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET E RBRACKET

602370
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET

R DIACYLGLYKIN DASH RXN
type: Reaction
is: DIACYLGLYKIN-RXN
product: 595550
reversible: false
reactant: 595526
product: 595562
fast: false
notes: GENE_ASSOCIATION: ACIAD2837
name: diacylglycerol kinase
reactant: 595538

595550
type: SpeciesReference
stoichiometry: 1.0
species: 570450

595526
type: SpeciesReference
stoichiometry: 1.0
species: M DIACYLGLYCEROL LBRACKET C RBRACKET

595562
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

595538
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R 1 PERIOD 1 PERIOD 99 PERIOD 25 DASH RXN
type: Reaction
reactant: 594164
product: 594188
reversible: true
reactant: 594176
name: quinate dehydrogenase (pyrroloquinoline-quinone)
fast: false
product: 594200
notes: GENE_ASSOCIATION: ACIAD1716
is: 1.1.99.25-RXN

594164
type: SpeciesReference
stoichiometry: 1.0
species: M PQQ LBRACKET P RBRACKET

594188
type: SpeciesReference
stoichiometry: 1.0
species: M DEHYDROQUINATE LBRACKET P RBRACKET

594176
type: SpeciesReference
stoichiometry: 1.0
species: M QUINATE LBRACKET P RBRACKET

594200
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 104 LBRACKET P RBRACKET

R RXN0 DASH 277
type: Reaction
name: 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase
notes: GENE_ASSOCIATION: ACIAD1999
reactant: 573771
reactant: 573759
is: RXN0-277
product: 573795
product: 573783
fast: false
reversible: false

573771
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH C DASH METHYL DASH D DASH ERYTHRITOL DASH 4 DASH PHOSPHATE LBRACKET C RBRACKET

573759
type: SpeciesReference
stoichiometry: 1.0
species: M CTP LBRACKET C RBRACKET

573795
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

573783
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 77 LBRACKET C RBRACKET

R 2 PERIOD 6 PERIOD 1 PERIOD 76 DASH RXN
type: Reaction
is: 2.6.1.76-RXN
fast: false
name: diaminobutyrate-2-oxoglutarate transaminase
reactant: 609764
reactant: 609752
product: 609788
reversible: true
notes: GENE_ASSOCIATION: ACIAD1210
product: 609776

609764
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

609752
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET

609788
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 470 LBRACKET C RBRACKET

609776
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

613470
type: Reaction
reactant: 613482
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of 2-aminobenzoate

613482
type: SpeciesReference
stoichiometry: 1.0
species: M ANTHRANILATE LBRACKET E RBRACKET

R DIMETHUROPORDEHYDROG DASH RXN
type: Reaction
fast: false
product: 617706
name: precorrin-2 oxidase
is: SHCHD2
reactant: 617694
is: DIMETHUROPORDEHYDROG-RXN
reactant: 617682
reversible: false
product: 617718
notes: GENE_ASSOCIATION: ACIAD2934

617706
type: SpeciesReference
stoichiometry: 1.0
species: M SIROHYDROCHLORIN LBRACKET C RBRACKET

617694
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROSIROHYDROCHLORIN LBRACKET C RBRACKET

617682
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

617718
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

R PRIBFAICARPISOM DASH RXN
type: Reaction
product: 589812
reactant: 589800
notes: GENE_ASSOCIATION: ACIAD3398
is: PRIBFAICARPISOM-RXN
is: PRMICI
fast: false
reversible: false
name: n-(5'-phospho-d-ribosylformimino)-5-amino-1-(5''-phosphoribosyl)-4- imidazole carboxamide isomerase

589812
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBULOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET

589800
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH FORMIMINO DASH AICAR DASH P LBRACKET C RBRACKET

R PROPKIN DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0541
reactant: 599694
is: PPAKr
reactant: 599706
reversible: true
name: propionate kinase
fast: false
product: 599730
is: PROPKIN-RXN
product: 599718

599694
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONATE LBRACKET C RBRACKET

599706
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

599730
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

599718
type: SpeciesReference
stoichiometry: 1.0
species: M PROPIONYL DASH P LBRACKET C RBRACKET

R GLYC3PDEHYDROGBIOSYN DASH RXN
type: Reaction
is: GLYC3PDEHYDROGBIOSYN-RXN
reversible: true
reactant: 616234
notes: GENE_ASSOCIATION: ACIAD1317
is: G3PD2
product: 616258
product: 616270
fast: false
reactant: 616246
name: glycerol-3-phosphate dehydrogenase (nad(p)+)

616234
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

616258
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

616270
type: SpeciesReference
stoichiometry: 1.0
species: M DIHYDROXY DASH ACETONE DASH PHOSPHATE LBRACKET C RBRACKET

616246
type: SpeciesReference
stoichiometry: 1.0
species: M GLYCEROL DASH 3P LBRACKET C RBRACKET

R PROTOPORGENOXI DASH RXN
type: Reaction
is: PROTOPORGENOXI-RXN
notes: GENE_ASSOCIATION:
is: PPPGO
reactant: 616522
reactant: 616534
name: protoporphyrinogen oxidase
product: 616558
reversible: false
product: 616546
fast: false

616522
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

616534
type: SpeciesReference
stoichiometry: 1.0
species: M PROTOPORPHYRINOGEN LBRACKET C RBRACKET

616558
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

616546
type: SpeciesReference
stoichiometry: 1.0
species: 570835

R TRANS DASH RXN DASH 100
type: Reaction
product: 574047
name: transport of l-carnitine [extraorganism;cytosol](secondary symport)
is: TRANS-RXN-100
is: CRNt7pp
notes: GENE_ASSOCIATION: ACIAD3460 or ACIAD1011
reactant: 574035
fast: false
reversible: false
reactant: 574023
product: 574059

574047
type: SpeciesReference
stoichiometry: 1.0
species: M CARNITINE LBRACKET C RBRACKET

574035
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

574023
type: SpeciesReference
stoichiometry: 1.0
species: M CARNITINE LBRACKET E RBRACKET

574059
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R RXNIM DASH 6095
type: Reaction
product: 573867
reactant: 573855
reactant: 573843
notes: GENE_ASSOCIATION: ACIAD1726
is: RXNIM-6095
fast: false
reversible: true
name: coumaryl-coa lyase

573867
type: SpeciesReference
stoichiometry: 1.0
species: M CPDIM DASH 6098 LBRACKET C RBRACKET

573855
type: SpeciesReference
stoichiometry: 1.0
species: M COUMARYL DASH COA LBRACKET C RBRACKET

573843
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R GABATRANSAM DASH RXN
type: Reaction
reversible: true
reactant: 602852
product: 602876
fast: false
is: ABTA
is: GABATRANSAM-RXN
name: 4-aminobutyrate aminotransferase
reactant: 602840
product: 602864
notes: GENE_ASSOCIATION: ACIAD3446

602852
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET

602876
type: SpeciesReference
stoichiometry: 1.0
species: M SUCC DASH S DASH ALD LBRACKET C RBRACKET

602840
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

602864
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

583531
type: Reaction
reactant: 583543
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of l-glutamate

583543
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET E RBRACKET

R FAD DASH UBIQUINONE DASH RXN
type: Reaction
product: 607350
notes: GENE_ASSOCIATION:
reactant: 607326
reversible: false
product: 607338
is: SUCD4
reactant: 607314
name: fad oxidation
fast: false

607350
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

607326
type: SpeciesReference
stoichiometry: 1.0
species: M FADH2 LBRACKET C RBRACKET

607338
type: SpeciesReference
stoichiometry: 1.0
species: M FAD LBRACKET C RBRACKET

607314
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

616390
type: Reaction
reactant: 616402
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of homoserine lactone

616402
type: SpeciesReference
stoichiometry: 1.0
species: M HOMOSERINE DASH LACTONE LBRACKET E RBRACKET

606642
type: Reaction
reactant: 606654
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of choline

606654
type: SpeciesReference
stoichiometry: 1.0
species: M CHOLINE LBRACKET E RBRACKET

R C4 COLON 0 DASH 3HYDROXYACP DASH DEHYDRATASE DASH RXN
type: Reaction
is: 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
name: 3hydroxyacyl-acp dehydratase (c4:0)
is: 3HAD40
fast: false
product: 612508
product: 612520
reactant: 612496
notes: GENE_ASSOCIATION: ACIAD1381
reversible: false

612508
type: SpeciesReference
stoichiometry: 1.0
species: M C4 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

612520
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

612496
type: SpeciesReference
stoichiometry: 1.0
species: M C4 COLON 0 DASH 3HYDROXYACP LBRACKET C RBRACKET

R TRANS DASH RXN DASH TAURINE
type: Reaction
product: 606630
reactant: 606594
is: 3.6.3.36-RXN
name: transport of taurine [extraorganism;cytosol](primary active atp)
reversible: false
reactant: 606582
product: 606606
reactant: 606570
fast: false
is: TAURabcpp
product: 606618
notes: GENE_ASSOCIATION: ACIAD1914 and ACIAD1463 and ACIAD1465 and ACIAD1464 or ACIAD1523 and ACIAD1524 and ACIAD1525 and ACIAD1526 or ACIAD1586 and ACIAD1587 and ACIAD1593 and ACIAD1601

606630
type: SpeciesReference
stoichiometry: 1.0
species: M TAURINE LBRACKET C RBRACKET

606594
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

606582
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

606606
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

606570
type: SpeciesReference
stoichiometry: 1.0
species: M TAURINE LBRACKET E RBRACKET

606618
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R BENZALDEHYDE DASH DEHYDROGENASE DASH LPAREN NAD PLUS RPAREN DASH RXN
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: ACIAD1430 or ACIAD1725
is: |BENZALDEHYDE-DEHYDROGENASE-(NAD+)-RXN|
name: benzaldehyde dehydrogenase (nad+)
product: 580750
fast: false
reactant: 580714
product: 580738
reactant: 580726
reactant: 580702

580750
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

580714
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

580738
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET C RBRACKET

580726
type: SpeciesReference
stoichiometry: 1.0
species: M BENZALDEHYDE LBRACKET C RBRACKET

580702
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

597995
type: Reaction
product: 598019
reactant: 598007
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of h2o [extraorganism;cytosol](passive)

598019
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

598007
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET E RBRACKET

R GLYCINE DASH DASH TRNA DASH LIGASE DASH RXN
type: Reaction
product: 592390
fast: false
product: 592414
name: glycine--trna ligase
reactant: 592366
is: GLYTRS
is: GLYCINE--TRNA-LIGASE-RXN
reactant: 592354
notes: GENE_ASSOCIATION: ACIAD3268 and ACIAD3269
reversible: false
product: 592402
reactant: 592378

592390
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

592414
type: SpeciesReference
stoichiometry: 1.0
species: M CHARGED DASH GLY DASH TRNAS LBRACKET C RBRACKET

592366
type: SpeciesReference
stoichiometry: 1.0
species: M GLY LBRACKET C RBRACKET

592354
type: SpeciesReference
stoichiometry: 1.0
species: M GLY DASH TRNAS LBRACKET C RBRACKET

M GLY DASH TRNAS LBRACKET C RBRACKET
type: Species
is: C01642
boundary condition: false
in compartment: 570138
is: GLY-TRNAS
has only substance units: false
initial amount: NaN
is: trnagly
constant: false
name: glycine trna
initial concentration: NaN

592402
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

592378
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R C4 COLON 0 DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
reactant: 589187
product: 589211
name: 3oxoacyl-acp synthase (c4:0)
product: 589223
is: KAS14
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )
fast: false
reversible: false
product: 589199
is: 3-OXOACYL-ACP-SYNTH-RXN
reactant: 589175

589187
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

589211
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

589223
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

589199
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOACETYL DASH S DASH ACP LBRACKET C RBRACKET

589175
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH ACP LBRACKET C RBRACKET

R PYRROLINECARBREDUCT DASH RXN
type: Reaction
product: 572519
product: 572531
fast: false
is: PYRROLINECARBREDUCT-RXN
reactant: 572507
notes: GENE_ASSOCIATION: ACIAD3032
name: pyrroline-5-carboxylate reductase
is: P5CR
reversible: false
reactant: 572495

572519
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET

572531
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

572507
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

572495
type: SpeciesReference
stoichiometry: 1.0
species: 571196

R TRANS DASH RXN DASH 57
type: Reaction
product: 609316
is: TRANS-RXN-57
is: ABUTt2pp
reversible: false
reactant: 609291
fast: false
name: transport of 4-aminobutyrate [extraorganism;cytosol](secondary symport)
product: 609304
notes: GENE_ASSOCIATION: ACIAD3448
reactant: 609279

609316
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET C RBRACKET

609291
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

609304
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

609279
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH AMINO DASH BUTYRATE LBRACKET E RBRACKET

R TRANS DASH RXNIM DASH 5812 DASH BIS
type: Reaction
reactant: 602756
notes: GENE_ASSOCIATION: ACIAD1417
is: TRANS-RXNIM-5812
name: transport of l-ornithine [extraorganism;cytosol](secondary antiport)
product: 602768
reversible: true
reactant: 602744
fast: false
product: 602780

602756
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET E RBRACKET

602768
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ORNITHINE LBRACKET C RBRACKET

602744
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

602780
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

578694
type: Reaction
reactant: 578706
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of caffeate

578706
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET E RBRACKET

R F16BDEPHOS DASH RXN
type: Reaction
is: FBP
reactant: 584557
reversible: false
product: 584569
fast: false
is: F16BDEPHOS-RXN
reactant: 584545
name: fructose-bisphosphatase
notes: GENE_ASSOCIATION: ACIAD2625
product: 584581

584557
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

584569
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

584545
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 16 DASH DIPHOSPHATE LBRACKET C RBRACKET

584581
type: SpeciesReference
stoichiometry: 1.0
species: M FRUCTOSE DASH 6P LBRACKET C RBRACKET

R GLUCARDEHYDRA DASH RXN
type: Reaction
is: GLCRD
fast: false
product: 573109
name: glucarate dehydratase
reactant: 573097
reversible: false
is: GLUCARDEHYDRA-RXN
product: 573121
notes: GENE_ASSOCIATION: ACIAD0128

573109
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH KETO DASH 4 DASH DEOXY DASH D DASH GLUCARATE LBRACKET C RBRACKET

573097
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GLUCARATE LBRACKET C RBRACKET

M D DASH GLUCARATE LBRACKET C RBRACKET
type: Species
is: D-GLUCARATE
is: C00818
name: d-glucarate
has only substance units: false
in compartment: 570138
boundary condition: false
is: glcr
constant: false
initial concentration: NaN
initial amount: NaN

573121
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R R11 DASH RXN
type: Reaction
reactant: 592958
is: BUTCT
is: R11-RXN
product: 592994
reversible: true
notes: GENE_ASSOCIATION: ACIAD2514 and ACIAD2513
name: acetate coa-transferase
reactant: 592970
product: 592982
fast: false

592958
type: SpeciesReference
stoichiometry: 1.0
species: M BUTYRYL DASH COA LBRACKET C RBRACKET

592994
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

592970
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

592982
type: SpeciesReference
stoichiometry: 1.0
species: 570739

583195
type: Reaction
reactant: 583207
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: exchange flux of o2

583207
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET E RBRACKET

R PANTEPADENYLYLTRAN DASH RXN
type: Reaction
product: 585821
reactant: 585785
fast: false
is: PTPATi
product: 585809
reversible: true
notes: GENE_ASSOCIATION: ACIAD2893
reactant: 585797
name: pantetheine-phosphate adenylyltransferase
is: PANTEPADENYLYLTRAN-RXN

585821
type: SpeciesReference
stoichiometry: 1.0
species: M DEPHOSPHO DASH COA LBRACKET C RBRACKET

585785
type: SpeciesReference
stoichiometry: 1.0
species: M PANTETHEINE DASH P LBRACKET C RBRACKET

585809
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

585797
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R TRANS DASH RXN DASH 151
type: Reaction
name: transport of so42- [extraorganism;cytosol](secondary symport)
product: 614260
is: TRANS-RXN-151
fast: false
notes: GENE_ASSOCIATION: ACIAD3384 or ACIAD1241
reactant: 614248
reactant: 614236
product: 614273
reversible: false

614260
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

614248
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

614236
type: SpeciesReference
stoichiometry: 1.0
species: M SULFATE LBRACKET E RBRACKET

614273
type: SpeciesReference
stoichiometry: 1.0
species: M SULFATE LBRACKET C RBRACKET

576009
type: Reaction
reactant: 576021
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of urea

576021
type: SpeciesReference
stoichiometry: 1.0
species: M UREA LBRACKET E RBRACKET

R TRANS DASH RXN DASH 118
type: Reaction
reactant: 608169
is: PROt4pp
notes: GENE_ASSOCIATION: ACIAD1649
fast: false
reactant: 608181
is: TRANS-RXN-118
product: 608205
name: transport of l-proline [extraorganism;cytosol](secondary symport)
product: 608193
reversible: false

608169
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET E RBRACKET

608181
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET E RBRACKET

608205
type: SpeciesReference
stoichiometry: 1.0
species: M NA PLUS LBRACKET C RBRACKET

608193
type: SpeciesReference
stoichiometry: 1.0
species: M PRO LBRACKET C RBRACKET

R ASPARTATE DASH DASH TRNAASN DASH LIGASE DASH RXN
type: Reaction
reactant: 617802
notes: GENE_ASSOCIATION: ACIAD0609
product: 617850
reactant: 617826
reversible: false
is: RXNIM-6192
fast: false
reactant: 617814
product: 617862
product: 617838
name: aspartate--trna(asn) ligase

617802
type: SpeciesReference
stoichiometry: 1.0
species: M ASN DASH TRNAS LBRACKET C RBRACKET

617850
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

617826
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

617814
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

617862
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

617838
type: SpeciesReference
stoichiometry: 1.0
species: M ASPARTYL DASH TRNAASN LBRACKET C RBRACKET

R C6 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
product: 576141
reactant: 576105
product: 576117
is: FACOAL60t2pp
fast: false
product: 576129
reversible: false
is: ACYLCOASYN-RXN
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reactant: 576081
name: acyl coa transferase (c6:0)
reactant: 576093

576141
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

576105
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

576117
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

576129
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH COA LBRACKET C RBRACKET

576081
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 LBRACKET C RBRACKET

576093
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

610040
type: Reaction
reactant: 610052
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of ethanol

610052
type: SpeciesReference
stoichiometry: 1.0
species: M ETOH LBRACKET E RBRACKET

R SUCCORNTRANSAM DASH RXN
type: Reaction
reversible: true
product: 575469
fast: false
name: succinylornithine transaminase
reactant: 575457
notes: GENE_ASSOCIATION: ACIAD1284
product: 575481
is: SUCCORNTRANSAM-RXN
reactant: 575444
is: SOTA

575469
type: SpeciesReference
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMIC DASH SEMIALDEHYDE LBRACKET C RBRACKET

575457
type: SpeciesReference
stoichiometry: 1.0
species: M N2 DASH SUCCINYLORNITHINE LBRACKET C RBRACKET

575481
type: SpeciesReference
stoichiometry: 1.0
species: M GLT LBRACKET C RBRACKET

575444
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

http://identifiers.org/biomodels.db/MODEL1949107276#R_C5_COLON_0_DASH_CARBOXY3HYDROXYCOA_DASH_DEHYDROGENASE_DASH_RXN
type: Reaction
product: 586146
is: RXNIM-6202
fast: false
product: 586158
name: dicarboxylate hydroxyacyl-coa dehydrogenase (c5:0)
reactant: 586134
reversible: false
notes: GENE_ASSOCIATION: ACIAD1690
reactant: 586122

586146
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

586158
type: SpeciesReference
stoichiometry: 1.0
species: 570895

586134
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

586122
type: SpeciesReference
stoichiometry: 1.0
species: 571052

R NITRITREDUCT DASH RXN
type: Reaction
reactant: 582363
is: NTRIR2x
notes: GENE_ASSOCIATION: ACIAD1909 and ACIAD1910
reactant: 582375
fast: false
product: 582411
product: 582399
name: nitrite reductase (nad(p)h)
reversible: false
is: NITRITREDUCT-RXN
product: 582387
reactant: 582350

582363
type: SpeciesReference
stoichiometry: 5.0
species: M PROTON LBRACKET C RBRACKET

582375
type: SpeciesReference
stoichiometry: 3.0
species: M NADH LBRACKET C RBRACKET

582411
type: SpeciesReference
stoichiometry: 2.0
species: M WATER LBRACKET C RBRACKET

582399
type: SpeciesReference
stoichiometry: 3.0
species: M NAD LBRACKET C RBRACKET

582387
type: SpeciesReference
stoichiometry: 1.0
species: M AMMONIUM LBRACKET C RBRACKET

582350
type: SpeciesReference
stoichiometry: 1.0
species: M NITRITE LBRACKET C RBRACKET

R TRANS DASH RXN DASH CYTIDINE
type: Reaction
product: 616306
name: transport of cytidine [extraorganism;cytosol](secondary symport)
reversible: false
notes: GENE_ASSOCIATION: ACIAD2389
product: 616318
reactant: 616294
reactant: 616282
is: TRANS-RXN-108B
fast: false
is: CYTDt2pp

616306
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

616318
type: SpeciesReference
stoichiometry: 1.0
species: M CYTIDINE LBRACKET C RBRACKET

616294
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

616282
type: SpeciesReference
stoichiometry: 1.0
species: M CYTIDINE LBRACKET E RBRACKET

R C18 COLON 1 LPAREN C9 RPAREN DASH 3OXOACP DASH SYNTHASE DASH RXN
type: Reaction
reversible: false
product: 606558
reactant: 606510
fast: false
name: 3oxoacyl-acp synthase (c18:1(c9))
is: 3-OXOACYL-ACP-SYNTH-RXN
product: 606534
reactant: 606522
product: 606546
notes: GENE_ASSOCIATION: ( ACIAD0580 or ACIAD0879 or ACIAD0583 or ACIAD2101 )

606558
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

606510
type: SpeciesReference
stoichiometry: 1.0
species: 570559

606534
type: SpeciesReference
stoichiometry: 1.0
species: 570595

606522
type: SpeciesReference
stoichiometry: 1.0
species: M MALONYL DASH ACP LBRACKET C RBRACKET

606546
type: SpeciesReference
stoichiometry: 1.0
species: M ACP LBRACKET C RBRACKET

R 4OHBENZOATE DASH OCTAPRENYLTRANSFER DASH RXN
type: Reaction
is: HBZOPT
reversible: true
product: 588622
product: 588634
name: hydroxybenzoate octaprenyltransferase
reactant: 588598
is: 4OHBENZOATE-OCTAPRENYLTRANSFER-RXN
reactant: 588610
notes: GENE_ASSOCIATION: ACIAD2455
fast: false

588622
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH OCTAPRENYL DASH 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET

588634
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

588598
type: SpeciesReference
stoichiometry: 1.0
species: M OCTAPRENYL DASH DIPHOSPHATE LBRACKET C RBRACKET

588610
type: SpeciesReference
stoichiometry: 1.0
species: M 4 DASH HYDROXYBENZOATE LBRACKET C RBRACKET

R GARTRANSFORMYL2 DASH RXN
type: Reaction
reactant: 571486
is: GART
reversible: false
reactant: 571462
product: 571510
product: 571498
is: GARTRANSFORMYL2-RXN
name: phosphoribosylglycinamide formyltransferase 2
notes: GENE_ASSOCIATION: ACIAD2078
reactant: 571474
product: 571522
fast: false

571486
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

571462
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH PHOSPHO DASH RIBOSYL DASH GLYCINEAMIDE LBRACKET C RBRACKET

571510
type: SpeciesReference
stoichiometry: 1.0
species: M 5 DASH P DASH RIBOSYL DASH N DASH FORMYLGLYCINEAMIDE LBRACKET C RBRACKET

571498
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

571474
type: SpeciesReference
stoichiometry: 1.0
species: M FORMATE LBRACKET C RBRACKET

571522
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

R MANNPGUANYLTRANGDP DASH RXN
type: Reaction
reversible: false
name: mannose-1-phosphate guanylyltransferase (gdp)
is: MAN1PT2
is: MANNPGUANYLTRANGDP-RXN
product: 575420
reactant: 575407
product: 575432
notes: GENE_ASSOCIATION: ACIAD0086
fast: false
reactant: 575395

575420
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

575407
type: SpeciesReference
stoichiometry: 1.0
species: M GDP LBRACKET C RBRACKET

575432
type: SpeciesReference
stoichiometry: 1.0
species: M GDP DASH MANNOSE LBRACKET C RBRACKET

575395
type: SpeciesReference
stoichiometry: 1.0
species: M MANNOSE DASH 1P LBRACKET C RBRACKET

R ASPCARBTRANS DASH RXN
type: Reaction
reactant: 590452
notes: GENE_ASSOCIATION: ACIAD1270 and ACIAD1271
reactant: 590440
product: 590464
is: ASPCT
reversible: false
product: 590476
is: ASPCARBTRANS-RXN
fast: false
name: aspartate carbamoyltransferase

590452
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

590440
type: SpeciesReference
stoichiometry: 1.0
species: M CARBAMOYL DASH P LBRACKET C RBRACKET

590464
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

590476
type: SpeciesReference
stoichiometry: 1.0
species: M CARBAMYUL DASH L DASH ASPARTATE LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5792
type: Reaction
reactant: 597959
notes: GENE_ASSOCIATION: ACIAD1681 or ACIAD1694
is: TRANS-RXNIM-5792
reversible: true
product: 597971
fast: false
name: transport of cis,cis-muconate [extraorganism;cytosol](secondary symport)
product: 597983
reactant: 597946

597959
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

597971
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET C RBRACKET

597983
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

597946
type: SpeciesReference
stoichiometry: 1.0
species: M CIS DASH CIS DASH MUCONATE LBRACKET E RBRACKET

R 3 DASH CH3 DASH 2 DASH OXOBUTANOATE DASH OH DASH CH3 DASH XFER DASH RXN
type: Reaction
reactant: 602419
is: 3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN
reactant: 602407
product: 602443
reactant: 602394
notes: GENE_ASSOCIATION: ACIAD3061
product: 602431
name: 3-methyl-2-oxobutanoate hydroxymethyltransferase
is: MOHMT
fast: false
reversible: false

602419
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETO DASH ISOVALERATE LBRACKET C RBRACKET

602407
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

602443
type: SpeciesReference
stoichiometry: 1.0
species: M THF LBRACKET C RBRACKET

602394
type: SpeciesReference
stoichiometry: 1.0
species: M METHYLENE DASH THF LBRACKET C RBRACKET

602431
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH DEHYDROPANTOATE LBRACKET C RBRACKET

R C6 COLON 0 DASH 3HYDROXYCOA DASH DEHYDROGENASE DASH RXN
type: Reaction
fast: false
product: 601366
reactant: 601330
is: OHACYL-COA-DEHYDROG-RXN
reactant: 601342
notes: GENE_ASSOCIATION: ACIAD0335 or ACIAD1565 or ACIAD2416
reversible: false
is: HACD2i
product: 601354
name: hydroxyacyl-coa dehydrogenase (c6:0)

601366
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

601330
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

601342
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

601354
type: SpeciesReference
stoichiometry: 1.0
species: M C6 COLON 0 DASH 3OXOCOA LBRACKET C RBRACKET

R C18 COLON 1 LPAREN C9 RPAREN DASH 3OXOCOA DASH THIOLASE DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD0334 or ACIAD1450 or ACIAD1706 or ACIAD1977 or ACIAD1689 or ACIAD2988 or ACIAD1569
name: 3oxoacyl-coa thiolase (c18:1(c9))
product: 572687
reversible: true
reactant: 572651
reactant: 572663
is: KETOACYLCOATHIOL-RXN
product: 572675
fast: false

572687
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

572651
type: SpeciesReference
stoichiometry: 1.0
species: 570330

572663
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

572675
type: SpeciesReference
stoichiometry: 1.0
species: 570294

R SUCCSEMIALDDEHYDROG DASH RXN
type: Reaction
name: succinate-semialdehyde dehydrogenase (nad(p)+)
reactant: 604933
is: SUCCSEMIALDDEHYDROG-RXN
product: 604958
reversible: true
fast: false
is: SSALy
product: 604945
reactant: 604909
reactant: 604921
notes: GENE_ASSOCIATION: ACIAD0960 or ACIAD2539 or ACIAD3445

604933
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

604958
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

604945
type: SpeciesReference
stoichiometry: 1.0
species: M SUC LBRACKET C RBRACKET

604909
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

604921
type: SpeciesReference
stoichiometry: 1.0
species: M SUCC DASH S DASH ALD LBRACKET C RBRACKET

R C18 COLON 0 DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
name: enoyl-coa hydratase (c18:0)
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
reactant: 599201
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
product: 599213
is: ECOAH8
reactant: 599189

599201
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

599213
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 3HYDROXYCOA LBRACKET C RBRACKET

599189
type: SpeciesReference
stoichiometry: 1.0
species: M C18 COLON 0 DASH 2ENOYLCOA LBRACKET C RBRACKET

R RXN DASH 1126
type: Reaction
name: caffeate coa ligase
reversible: false
product: 613895
product: 613907
notes: GENE_ASSOCIATION: ACIAD1724
is: RXN-1126
reactant: 613871
reactant: 613859
fast: false
reactant: 613883
product: 613919

613895
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

613907
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEOYL DASH COA LBRACKET C RBRACKET

613871
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

613859
type: SpeciesReference
stoichiometry: 1.0
species: M CAFFEATE LBRACKET C RBRACKET

613883
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

613919
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

http://identifiers.org/biomodels.db/MODEL1949107276#R_C10_COLON_0_DASH_CARBOXY2ENOYLCOA_DASH_HYDRATASE_DASH_RXN
type: Reaction
product: 600139
reactant: 600127
reactant: 600115
notes: GENE_ASSOCIATION: ACIAD1692
is: RXNIM-6201
fast: false
reversible: false
name: dicarboxylate enoyl-coa hydratase (c10:0)

600139
type: SpeciesReference
stoichiometry: 1.0
species: 570150

600127
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

600115
type: SpeciesReference
stoichiometry: 1.0
species: 570751

R SUCCGLUALDDEHYD DASH RXN
type: Reaction
product: 606401
reactant: 606353
is: SUCCGLUALDDEHYD-RXN
is: SGSAD
reversible: true
reactant: 606365
reactant: 606341
name: succinylglutamic semialdehyde dehydrogenase
notes: GENE_ASSOCIATION: ACIAD1287
product: 606389
fast: false
product: 606377

606401
type: SpeciesReference
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMATE LBRACKET C RBRACKET

606353
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

606365
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

606341
type: SpeciesReference
stoichiometry: 1.0
species: M N2 DASH SUCCINYLGLUTAMIC DASH SEMIALDEHYDE LBRACKET C RBRACKET

606389
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

606377
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

R SAICARSYN DASH RXN
type: Reaction
name: phosphoribosylaminoimidazole-succinocarboxamide synthase
fast: false
notes: GENE_ASSOCIATION: ACIAD3587
is: PRASCS
reactant: 588839
product: 588875
reversible: false
product: 588887
reactant: 588863
is: SAICARSYN-RXN
product: 588899
reactant: 588851

588839
type: SpeciesReference
stoichiometry: 1.0
species: M PHOSPHORIBOSYL DASH CARBOXY DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

588875
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

588887
type: SpeciesReference
stoichiometry: 1.0
species: M P DASH RIBOSYL DASH 4 DASH SUCCCARB DASH AMINOIMIDAZOLE LBRACKET C RBRACKET

588863
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

588899
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

588851
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE LBRACKET C RBRACKET

R SULFITE DASH REDUCT DASH RXN
type: Reaction
product: 600054
product: 600030
reactant: 600018
reversible: true
fast: false
reactant: 600006
is: SULFITE-REDUCT-RXN
product: 600042
name: sulfite reductase (nadph)
is: SULRi
notes: GENE_ASSOCIATION: ACIAD2982 and ACIAD2981

600054
type: SpeciesReference
stoichiometry: 3.0
species: M WATER LBRACKET C RBRACKET

600030
type: SpeciesReference
stoichiometry: 1.0
species: M HS LBRACKET C RBRACKET

600018
type: SpeciesReference
stoichiometry: 3.0
species: M NADPH LBRACKET C RBRACKET

600006
type: SpeciesReference
stoichiometry: 1.0
species: M SO3 LBRACKET C RBRACKET

600042
type: SpeciesReference
stoichiometry: 3.0
species: M NADP LBRACKET C RBRACKET

R DCTP DASH PYROPHOSPHATASE DASH RXN
type: Reaction
fast: false
product: 595382
reversible: false
notes: GENE_ASSOCIATION: ACIAD3065
reactant: 595346
name: dctp pyrophosphatase
product: 595370
is: DCTP-PYROPHOSPHATASE-RXN
is: NTPP3
reactant: 595358

595382
type: SpeciesReference
stoichiometry: 1.0
species: M DCMP LBRACKET C RBRACKET

595346
type: SpeciesReference
stoichiometry: 1.0
species: M DCTP LBRACKET C RBRACKET

595370
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

595358
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

R PYRUVOXID DASH RXN
type: Reaction
reactant: 586602
product: 586614
notes: GENE_ASSOCIATION: ACIAD3381
is: POX
product: 586639
name: pyruvate dehydrogenase (cytochrome)
reactant: 586578
reversible: false
is: PYRUVOXID-RXN
fast: false
reactant: 586590
product: 586626

586602
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

586614
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINOL DASH 8 LBRACKET C RBRACKET

586639
type: SpeciesReference
stoichiometry: 1.0
species: M ACET LBRACKET C RBRACKET

586578
type: SpeciesReference
stoichiometry: 1.0
species: M PYRUVATE LBRACKET C RBRACKET

586590
type: SpeciesReference
stoichiometry: 1.0
species: M UBIQUINONE DASH 8 LBRACKET C RBRACKET

586626
type: SpeciesReference
stoichiometry: 1.0
species: M CARBON DASH DIOXIDE LBRACKET C RBRACKET

614704
type: Reaction
reactant: 614717
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: exchange flux of tricarballylate

614717
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 3571 LBRACKET E RBRACKET

R TREHALOSEPHOSPHA DASH RXN
type: Reaction
product: 611363
reactant: 611327
notes: GENE_ASSOCIATION: ACIAD1775
fast: false
name: trehalose-phosphatase
reversible: false
reactant: 611339
is: TRE6PP
product: 611351
is: TREHALOSEPHOSPHA-RXN

611363
type: SpeciesReference
stoichiometry: 1.0
species: M TREHALOSE LBRACKET C RBRACKET

M TREHALOSE LBRACKET C RBRACKET
type: Species
initial concentration: NaN
in compartment: 570138
is: tre
is: TREHALOSE
initial amount: NaN
boundary condition: false
name: trehalose
constant: false
is: C01083
has only substance units: false

611327
type: SpeciesReference
stoichiometry: 1.0
species: M TREHALOSE DASH 6P LBRACKET C RBRACKET

611339
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

611351
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R PROTOHEMEFERROCHELAT DASH RXN
type: Reaction
notes: GENE_ASSOCIATION: ACIAD3255
is: PROTOHEMEFERROCHELAT-RXN
reactant: 582435
product: 582459
fast: false
name: ferrochelatase
reversible: true
is: FCLT
product: 582447
reactant: 582423

582435
type: SpeciesReference
stoichiometry: 1.0
species: M FE PLUS 2 LBRACKET C RBRACKET

582459
type: SpeciesReference
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET

582447
type: SpeciesReference
stoichiometry: 1.0
species: M PROTOHEME LBRACKET C RBRACKET

582423
type: SpeciesReference
stoichiometry: 1.0
species: 570835

575637
type: Reaction
product: 575661
reactant: 575649
notes: GENE_ASSOCIATION:
fast: false
reversible: false
name: transport of d-aspartate [extraorganism;cytosol](passive)

575661
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 302 LBRACKET C RBRACKET

575649
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 302 LBRACKET E RBRACKET

R SUPEROX DASH DISMUT DASH RXN
type: Reaction
reactant: 585472
fast: false
notes: GENE_ASSOCIATION: ACIAD1070 or ACIAD1346 or ACIAD2072
is: SPODM
product: 585496
reversible: false
reactant: 585460
name: superoxide dismutase
is: SUPEROX-DISMUT-RXN
product: 585484

585472
type: SpeciesReference
stoichiometry: 2.0
species: M SUPER DASH OXIDE LBRACKET C RBRACKET

585496
type: SpeciesReference
stoichiometry: 1.0
species: M HYDROGEN DASH PEROXIDE LBRACKET C RBRACKET

585460
type: SpeciesReference
stoichiometry: 2.0
species: M PROTON LBRACKET C RBRACKET

585484
type: SpeciesReference
stoichiometry: 1.0
species: M OXYGEN DASH MOLECULE LBRACKET C RBRACKET

R LPAREN R COMMA R RPAREN DASH BUTANEDIOL DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 575925
reactant: 575913
fast: false
product: 575937
name: (r,r)-butanediol dehydrogenase
notes: GENE_ASSOCIATION: ACIAD1021
product: 575949
is: |(R,R)-BUTANEDIOL-DEHYDROGENASE-RXN|
reversible: true

575925
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

575913
type: SpeciesReference
stoichiometry: 1.0
species: M BUTANEDIOL LBRACKET C RBRACKET

575937
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

575949
type: SpeciesReference
stoichiometry: 1.0
species: M ACETOIN LBRACKET C RBRACKET

R PHOSACETYLTRANS DASH RXN
type: Reaction
reversible: true
reactant: 600776
product: 600812
reactant: 600788
fast: false
is: PTAr
notes: GENE_ASSOCIATION: ACIAD2287 or ACIAD0540
is: PHOSACETYLTRANS-RXN
name: phosphate acetyltransferase
product: 600800

600776
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

600812
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH COA LBRACKET C RBRACKET

600788
type: SpeciesReference
stoichiometry: 1.0
species: M ACETYL DASH P LBRACKET C RBRACKET

600800
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R TRANS DASH RXNIM DASH 5808
type: Reaction
product: 595829
reactant: 595817
notes: GENE_ASSOCIATION: ACIAD1433
is: TRANS-RXNIM-5808
fast: false
reversible: true
name: transport of benzoate [extraorganism;periplasm](passive)

595829
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET P RBRACKET

595817
type: SpeciesReference
stoichiometry: 1.0
species: M BENZOATE LBRACKET E RBRACKET

R ADOMET DASH DMK DASH METHYLTRANSFER DASH RXN
type: Reaction
reversible: false
reactant: 579801
product: 579825
is: ADOMET-DMK-METHYLTRANSFER-RXN
notes: GENE_ASSOCIATION: ACIAD2118 or ACIAD0384 or ACIAD1391
product: 579813
is: AMMQLT8
name: s-adenosylmethione:2-demethylmenaquinol methyltransferase
fast: false
reactant: 579789

579801
type: SpeciesReference
stoichiometry: 1.0
species: M DEMETHYLMENAQUINONE LBRACKET C RBRACKET

579825
type: SpeciesReference
stoichiometry: 1.0
species: 570619

579813
type: SpeciesReference
stoichiometry: 1.0
species: M ADENOSYL DASH HOMO DASH CYS LBRACKET C RBRACKET

579789
type: SpeciesReference
stoichiometry: 1.0
species: M S DASH ADENOSYLMETHIONINE LBRACKET C RBRACKET

R ASPARTATE DASH SEMIALDEHYDE DASH DEHYDROGENASE DASH RXN
type: Reaction
product: 615464
name: aspartate-semialdehyde dehydrogenase
product: 615476
reactant: 615440
is: ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN
is: ASAD
reversible: true
fast: false
product: 615488
reactant: 615452
notes: GENE_ASSOCIATION: ACIAD0479

615464
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

615476
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH ASPARTATE DASH SEMIALDEHYDE LBRACKET C RBRACKET

615440
type: SpeciesReference
stoichiometry: 1.0
species: M L DASH BETA DASH ASPARTYL DASH P LBRACKET C RBRACKET

615488
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

615452
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

R C12 COLON 0 DASH 2ENOYLACP DASH ISOMERASE DASH RXN
type: Reaction
product: 612784
reactant: 612773
notes: GENE_ASSOCIATION:
is: TRANS-2-DECENOYL-ACP-ISOM-RXN
fast: false
reversible: true
name: 2enoyl-acp isomerase (c12:0)

612784
type: SpeciesReference
stoichiometry: 1.0
species: 570306

612773
type: SpeciesReference
stoichiometry: 1.0
species: M C12 COLON 0 DASH 2ENOYLACP LBRACKET C RBRACKET

608313
type: Reaction
reactant: 608567
product: 608797
reactant: 608555
product: 608616
product: 608821
reactant: 608543
reactant: 608531
name: protein synthesis reaction
notes: GENE_ASSOCIATION:
product: 608736
product: 608628
product: 608676
reactant: 608349
reactant: 608470
product: 608712
reactant: 608337
product: 608640
reactant: 608325
product: 608845
product: 608700
reactant: 608398
reactant: 608386
product: 608579
product: 608773
product: 608785
reactant: 608519
product: 608809
reactant: 608507
product: 608724
product: 608604
product: 608652
reactant: 608458
reactant: 608373
product: 608688
reactant: 608446
reactant: 608361
reactant: 608434
product: 608592
product: 608749
reversible: false
product: 608833
product: 608664
reactant: 608422
reactant: 608410
fast: false
reactant: 608495
product: 608761
reactant: 608483

608567
type: SpeciesReference
stoichiometry: 0.07
species: M CHARGED DASH LEU DASH TRNAS LBRACKET C RBRACKET

608797
type: SpeciesReference
stoichiometry: 0.03
species: M ARG DASH TRNAS LBRACKET C RBRACKET

608555
type: SpeciesReference
stoichiometry: 0.04
species: M CHARGED DASH GLT DASH TRNAS LBRACKET C RBRACKET

608616
type: SpeciesReference
stoichiometry: 0.04
species: M ASN DASH TRNAS LBRACKET C RBRACKET

608821
type: SpeciesReference
stoichiometry: 4.2
species: M ADP LBRACKET C RBRACKET

608543
type: SpeciesReference
stoichiometry: 0.02
species: M CHARGED DASH CYS DASH TRNAS LBRACKET C RBRACKET

608531
type: SpeciesReference
stoichiometry: 0.04
species: M CHARGED DASH ASN DASH TRNAS LBRACKET C RBRACKET

608736
type: SpeciesReference
stoichiometry: 0.02
species: M MET DASH TRNAS LBRACKET C RBRACKET

608628
type: SpeciesReference
stoichiometry: 0.02
species: M CYS DASH TRNAS LBRACKET C RBRACKET

608676
type: SpeciesReference
stoichiometry: 0.05
species: M LYS DASH TRNAS LBRACKET C RBRACKET

608349
type: SpeciesReference
stoichiometry: 0.05
species: M CHARGED DASH LYS DASH TRNAS LBRACKET C RBRACKET

608470
type: SpeciesReference
stoichiometry: 0.04
species: M CHARGED DASH SER DASH TRNAS LBRACKET C RBRACKET

608712
type: SpeciesReference
stoichiometry: 0.04
species: M PRO DASH TRNAS LBRACKET C RBRACKET

608337
type: SpeciesReference
stoichiometry: 0.05
species: M CHARGED DASH ILE DASH TRNAS LBRACKET C RBRACKET

608640
type: SpeciesReference
stoichiometry: 0.07
species: M LEU DASH TRNAS LBRACKET C RBRACKET

608325
type: SpeciesReference
stoichiometry: 0.01
species: M CHARGED DASH TRP DASH TRNAS LBRACKET C RBRACKET

608845
type: SpeciesReference
stoichiometry: 0.05
species: M THR DASH TRNAS LBRACKET C RBRACKET

608700
type: SpeciesReference
stoichiometry: 0.04
species: M GLN DASH TRNAS LBRACKET C RBRACKET

608398
type: SpeciesReference
stoichiometry: 0.04
species: M CHARGED DASH PRO DASH TRNAS LBRACKET C RBRACKET

608386
type: SpeciesReference
stoichiometry: 0.04
species: M CHARGED DASH GLN DASH TRNAS LBRACKET C RBRACKET

608579
type: SpeciesReference
stoichiometry: 4.2
species: M PI LBRACKET C RBRACKET

608773
type: SpeciesReference
stoichiometry: 0.04
species: M ASP DASH TRNAS LBRACKET C RBRACKET

608785
type: SpeciesReference
stoichiometry: 0.0988
species: 571244

608519
type: SpeciesReference
stoichiometry: 4.2
species: M ATP LBRACKET C RBRACKET

608809
type: SpeciesReference
stoichiometry: 0.04
species: M SER DASH TRNAS LBRACKET C RBRACKET

608507
type: SpeciesReference
stoichiometry: 0.2
species: M CHARGED DASH GLY DASH TRNAS LBRACKET C RBRACKET

608724
type: SpeciesReference
stoichiometry: 0.08
species: M VAL DASH TRNAS LBRACKET C RBRACKET

608604
type: SpeciesReference
stoichiometry: 0.04
species: M GLT DASH TRNAS LBRACKET C RBRACKET

608652
type: SpeciesReference
stoichiometry: 0.01
species: M TRP DASH TRNAS LBRACKET C RBRACKET

608458
type: SpeciesReference
stoichiometry: 0.03
species: M CHARGED DASH ARG DASH TRNAS LBRACKET C RBRACKET

608373
type: SpeciesReference
stoichiometry: 0.02
species: M CHARGED DASH MET DASH TRNAS LBRACKET C RBRACKET

608688
type: SpeciesReference
stoichiometry: 0.01
species: M HIS DASH TRNAS LBRACKET C RBRACKET

608446
type: SpeciesReference
stoichiometry: 0.04
species: M CHARGED DASH ASP DASH TRNAS LBRACKET C RBRACKET

608361
type: SpeciesReference
stoichiometry: 0.01
species: M CHARGED DASH HIS DASH TRNAS LBRACKET C RBRACKET

608434
type: SpeciesReference
stoichiometry: 0.02
species: M CHARGED DASH TYR DASH TRNAS LBRACKET C RBRACKET

608592
type: SpeciesReference
stoichiometry: 0.2
species: M GLY DASH TRNAS LBRACKET C RBRACKET

608749
type: SpeciesReference
stoichiometry: 0.02
species: M PHE DASH TRNAS LBRACKET C RBRACKET

608833
type: SpeciesReference
stoichiometry: 0.13
species: M ALA DASH TRNAS LBRACKET C RBRACKET

608664
type: SpeciesReference
stoichiometry: 0.05
species: M ILE DASH TRNAS LBRACKET C RBRACKET

608422
type: SpeciesReference
stoichiometry: 0.02
species: M CHARGED DASH PHE DASH TRNAS LBRACKET C RBRACKET

608410
type: SpeciesReference
stoichiometry: 0.08
species: M CHARGED DASH VAL DASH TRNAS LBRACKET C RBRACKET

608495
type: SpeciesReference
stoichiometry: 0.05
species: M CHARGED DASH THR DASH TRNAS LBRACKET C RBRACKET

608761
type: SpeciesReference
stoichiometry: 0.02
species: M TYR DASH TRNAS LBRACKET C RBRACKET

608483
type: SpeciesReference
stoichiometry: 0.13
species: M CHARGED DASH ALA DASH TRNAS LBRACKET C RBRACKET

M CHARGED DASH ALA DASH TRNAS LBRACKET C RBRACKET
type: Species
is: alatrna
is: CHARGED-ALA-TRNAS
name: charged alanine trna
has only substance units: false
is: C00886
in compartment: 570138
initial amount: NaN
boundary condition: false
initial concentration: NaN
constant: false

R THI DASH P DASH SYN DASH RXN
type: Reaction
is: THI-P-SYN-RXN
name: thiamine-phosphate pyrophosphorylase
is: TMPPP
reactant: 595610
notes: GENE_ASSOCIATION: ACIAD1200
reversible: true
fast: false
product: 595622
reactant: 595598
product: 595634

595610
type: SpeciesReference
stoichiometry: 1.0
species: M AMINO DASH HYDROXYMETHYL DASH METHYLPYRIMIDINE DASH PP LBRACKET C RBRACKET

595622
type: SpeciesReference
stoichiometry: 1.0
species: M THIAMINE DASH P LBRACKET C RBRACKET

595598
type: SpeciesReference
stoichiometry: 1.0
species: M THZ DASH P LBRACKET C RBRACKET

595634
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

R TREHALOSE6PSYN DASH RXN
type: Reaction
reactant: 584701
reversible: false
notes: GENE_ASSOCIATION: ACIAD1774
fast: false
product: 584737
product: 584725
is: TRE6PS
name: alpha,alpha-trehalose-phosphate synthase (udp-forming)
reactant: 584713
is: TREHALOSE6PSYN-RXN

584701
type: SpeciesReference
stoichiometry: 1.0
species: M GLC DASH 6 DASH P LBRACKET C RBRACKET

584737
type: SpeciesReference
stoichiometry: 1.0
species: M UDP LBRACKET C RBRACKET

584725
type: SpeciesReference
stoichiometry: 1.0
species: M TREHALOSE DASH 6P LBRACKET C RBRACKET

584713
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH GLUCOSE LBRACKET C RBRACKET

R 2 COMMA 5 DASH DIOXOVALERATE DASH DEHYDROGENASE DASH RXN
type: Reaction
reactant: 588082
name: 2,5-dioxovalerate dehydrogenase
product: 588130
reactant: 588106
fast: false
notes: GENE_ASSOCIATION: ACIAD0131
is: |2,5-DIOXOVALERATE-DEHYDROGENASE-RXN|
product: 588118
reactant: 588094
reversible: true

588082
type: SpeciesReference
stoichiometry: 1.0
species: M NADP LBRACKET C RBRACKET

588130
type: SpeciesReference
stoichiometry: 1.0
species: M NADPH LBRACKET C RBRACKET

588106
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

588118
type: SpeciesReference
stoichiometry: 1.0
species: M 2 DASH KETOGLUTARATE LBRACKET C RBRACKET

588094
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 654 LBRACKET C RBRACKET

R C14 COLON 0 DASH COATRANSFERASE DASH RXN
type: Reaction
reactant: 614522
name: acyl coa transferase (c14:0)
notes: GENE_ASSOCIATION: ACIAD1818 or ACIAD0235 or ACIAD1724 or ACIAD2106
reversible: false
product: 614535
reactant: 614496
product: 614548
product: 614561
is: ACYLCOASYN-RXN
reactant: 614509
fast: false
is: FACOAL140t2pp

614522
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 LBRACKET C RBRACKET

614535
type: SpeciesReference
stoichiometry: 1.0
species: M AMP LBRACKET C RBRACKET

614496
type: SpeciesReference
stoichiometry: 1.0
species: M CO DASH A LBRACKET C RBRACKET

614548
type: SpeciesReference
stoichiometry: 1.0
species: M C14 COLON 0 DASH COA LBRACKET C RBRACKET

614561
type: SpeciesReference
stoichiometry: 1.0
species: M PPI LBRACKET C RBRACKET

614509
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

R C14 COLON 1 LPAREN C5 RPAREN DASH 2ENOYLCOA DASH HYDRATASE DASH RXN
type: Reaction
product: 596983
reactant: 596971
reactant: 596959
notes: GENE_ASSOCIATION: ACIAD1692 or ACIAD1726 or ACIAD1820 or ACIAD1829 or ACIAD2351 or ACIAD3073 or ACIAD1609 or ACIAD0335 or ACIAD1608 or ACIAD1701 or ACIAD1565 or ACIAD2416
is: ENOYL-COA-HYDRAT-RXN
fast: false
reversible: false
name: enoyl-coa hydratase (c14:1(c5))

596983
type: SpeciesReference
stoichiometry: 1.0
species: 570547

596971
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

596959
type: SpeciesReference
stoichiometry: 1.0
species: 570763

605993
type: Reaction
product: 606017
reactant: 606005
notes: GENE_ASSOCIATION:
fast: false
reversible: true
name: transport of h2o [extraorganism;periplasm](passive)

606017
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET

606005
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET E RBRACKET

R UDP DASH NACMURALA DASH GLU DASH LIG DASH RXN
type: Reaction
reactant: 603826
notes: GENE_ASSOCIATION: ACIAD0270
reversible: false
is: UDP-NACMURALA-GLU-LIG-RXN
reactant: 603838
product: 603874
is: UAMAGS
product: 603886
name: udp-n-acetylmuramoylalanine--d-glutamate ligase
fast: false
reactant: 603850
product: 603862

603826
type: SpeciesReference
stoichiometry: 1.0
species: M D DASH GLT LBRACKET C RBRACKET

603838
type: SpeciesReference
stoichiometry: 1.0
species: M ATP LBRACKET C RBRACKET

603874
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH AA DASH GLUTAMATE LBRACKET C RBRACKET

603886
type: SpeciesReference
stoichiometry: 1.0
species: M ADP LBRACKET C RBRACKET

603850
type: SpeciesReference
stoichiometry: 1.0
species: M UDP DASH ACETYLMURAMOYL DASH ALA LBRACKET C RBRACKET

603862
type: SpeciesReference
stoichiometry: 1.0
species: M PI LBRACKET C RBRACKET

R TRANS DASH RXN DASH URIDINE
type: Reaction
is: TRANS-RXN-108I
notes: GENE_ASSOCIATION: ACIAD2389
reactant: 572699
product: 572735
product: 572723
fast: false
is: URIt2pp
reactant: 572711
name: transport of uridine [extraorganism;cytosol](secondary symport)
reversible: false

572699
type: SpeciesReference
stoichiometry: 1.0
species: M URIDINE LBRACKET E RBRACKET

572735
type: SpeciesReference
stoichiometry: 1.0
species: M URIDINE LBRACKET C RBRACKET

572723
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET C RBRACKET

572711
type: SpeciesReference
stoichiometry: 1.0
species: M PROTON LBRACKET P RBRACKET

R 1 PERIOD 2 PERIOD 1 PERIOD 65 DASH RXN
type: Reaction
fast: false
reactant: 616354
reactant: 616342
name: salicylaldehyde dehydrogenase
is: 1.2.1.65-RXN
reactant: 616330
product: 616378
notes: GENE_ASSOCIATION: ACIAD1430 or ACIAD1725
product: 616366
reversible: true

616354
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET C RBRACKET

616342
type: SpeciesReference
stoichiometry: 1.0
species: M NAD LBRACKET C RBRACKET

616330
type: SpeciesReference
stoichiometry: 1.0
species: M SALICYLALDEHYDE LBRACKET C RBRACKET

616378
type: SpeciesReference
stoichiometry: 1.0
species: M NADH LBRACKET C RBRACKET

616366
type: SpeciesReference
stoichiometry: 1.0
species: M CPD DASH 110 LBRACKET C RBRACKET

R DHSHIKIMATE DASH DEHYDRO DASH RXN
type: Reaction
product: 573085
product: 573073
reactant: 573061
notes: GENE_ASSOCIATION: ACIAD1714
is: DHSHIKIMATE-DEHYDRO-RXN
fast: false
reversible: true
name: 3-dehydroshikimate dehydratase

573085
type: SpeciesReference
stoichiometry: 1.0
species: M 3 COMMA 4 DASH DIHYDROXYBENZOATE LBRACKET P RBRACKET

573073
type: SpeciesReference
stoichiometry: 1.0
species: M WATER LBRACKET P RBRACKET

573061
type: SpeciesReference
stoichiometry: 1.0
species: M 3 DASH DEHYDRO DASH SHIKIMATE LBRACKET P RBRACKET