MODEL1108160000
type: SBMLModel
reaction: 581451
reaction: 580097
reaction: 580553
species: 573926
reaction: 580731
reaction: 581573
reaction: 581253
reaction: 578570
reaction: 579057
reaction: 580340
species: 574550
reaction: 579383
species: 575462
reaction: 581486
reaction: 580407
reaction: 578283
reaction: 579640
species: 575992
reaction: 581199
reaction: 580436
reaction: 579382
species: 578105
species: 577419
reaction: 578196
species: 574098
reaction: 579303
reaction: 580049
reaction: 581456
species: 577809
reaction: 578739
reaction: 580188
species: 577083
reaction: 579909
reaction: 579266
reaction: 579302
reaction: 580316
reaction: 579129
species: 575345
reaction: 578909
species: 574257
reaction: 579265
species: 575815
reaction: 579197
reaction: 581118
reaction: 580941
species: 576954
species: 575693
species: 577761
reaction: 580344
reaction: 580854
reaction: 581081
reaction: 578493
species: 577902
reaction: 580911
reaction: 580677
species: 574313
reaction: 580824
reaction: 579307
reaction: 581327
reaction: 579820
species: 575941
species: 575273
species: 576796
reaction: 581000
species: 576751
species: 575429
species: 575267
species: 578159
reaction: 579603
reaction: 580470
species: 575222
species: 575588
reaction: 578622
species: 577656
reaction: 579632
reaction: 578535
species: 574676
species: 577191
reaction: 580926

581451
type: Reaction
reactant: 609150
reversible: false
name: SUF [4Fe-4S] Reduction
kinetic law: 609188
fast: false
reactant: 609138
reactant: 609126
notes: GENE_ASSOCIATION: (b1683 and b1682 and b1681) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 609176
product: 609163

609150
type: SpeciesReference
stoichiometry: 1.0
species: 576097

576097
type: Species
notes: FORMULA: O2S10Fe4R CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: SufBCD with two bound [2Fe-2S] clusters

573750
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Cytoplasm

595162
type: LocalParameter
units: 456180
value: 0.0

456216
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exponent: -1.0
scale: 0
multipler: 2.77777777777778E-4
kind: SECOND

456204
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scale: 0
multipler: 1.0
kind: GRAM

456192
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exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

595160
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units: 456180
value: 0.0

595159
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units: 456180
value: 1000.0

595158
type: LocalParameter
units: 456180
value: 0.0

609138
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species: 575090

575090
type: Species
notes: FORMULA: H CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: H+

609126
type: SpeciesReference
stoichiometry: 1.0
species: 574766

574766
type: Species
notes: FORMULA: C27H33N9O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Flavin adenine dinucleotide reduced

609176
type: SpeciesReference
stoichiometry: 1.0
species: 576100

576100
type: Species
notes: FORMULA: H4O2S10Fe4R CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: SufBCD with bound [4Fe-4S] cluster

609163
type: SpeciesReference
stoichiometry: 1.0
species: 574763

574763
type: Species
notes: FORMULA: C27H31N9O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Flavin adenine dinucleotide oxidized

580097
type: Reaction
product: 532506
kinetic law: 532530
name: glutaminase
product: 532518
notes: GENE_ASSOCIATION: b2957 SUBSYSTEM: Glutamate Metabolism EC Number: 3.5.1.2
reactant: 532494
reactant: 532482
reversible: false
fast: false

532506
type: SpeciesReference
stoichiometry: 1.0
species: 577865

577865
type: Species
notes: FORMULA: C5H8NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Glutamate

573755
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Periplasm

589589
type: LocalParameter
units: 456180
value: 0.0

589587
type: LocalParameter
units: 456180
value: 0.0

589586
type: LocalParameter
units: 456180
value: 1000.0

589584
type: LocalParameter
units: 456180
value: 0.0

532518
type: SpeciesReference
stoichiometry: 1.0
species: 577997

577997
type: Species
notes: FORMULA: H4N CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Ammonium

532494
type: SpeciesReference
stoichiometry: 1.0
species: 577890

577890
type: Species
notes: FORMULA: H2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: H2O

532482
type: SpeciesReference
stoichiometry: 1.0
species: 577863

577863
type: Species
notes: FORMULA: C5H10N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Glutamine

580553
type: Reaction
kinetic law: 554234
product: 554222
reactant: 554209
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-lysine transport via diffusion (extracellular to periplasm)

591461
type: LocalParameter
units: 456180
value: 0.0

591460
type: LocalParameter
units: 456180
value: 0.0

591458
type: LocalParameter
units: 456180
value: 1000.0

591457
type: LocalParameter
units: 456180
value: -1000.0

554222
type: SpeciesReference
stoichiometry: 1.0
species: 577931

577931
type: Species
notes: FORMULA: C6H15N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Lysine

554209
type: SpeciesReference
stoichiometry: 1.0
species: 577131

577131
type: Species
notes: FORMULA: C6H15N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Lysine

573753
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Extracellular

573926
type: Species
notes: FORMULA: C48H74O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Octaprenyl-3-methyl-6-methoxy- 1,4-benzoquinol

580731
type: Reaction
fast: false
notes: GENE_ASSOCIATION: b3624 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reversible: false
name: 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis)
reactant: 561559
reactant: 561546
product: 561571
product: 561595
product: 561583
kinetic law: 561607

561559
type: SpeciesReference
stoichiometry: 1.0
species: 575776

575776
type: Species
notes: FORMULA: C131H230N2O63P4 CHARGE: -10
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA

561546
type: SpeciesReference
stoichiometry: 1.0
species: 574470

574470
type: Species
notes: FORMULA: C17H24N3O15P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CMP-3-deoxy-D-manno-octulosonate

561571
type: SpeciesReference
stoichiometry: 1.0
species: 574474

574474
type: Species
notes: FORMULA: C9H12N3O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CMP

561595
type: SpeciesReference
stoichiometry: 1.0
species: 575291

575291
type: Species
notes: FORMULA: C139H241N2O70P4 CHARGE: -11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA

561583
type: SpeciesReference
stoichiometry: 1.0
species: 575090

592204
type: LocalParameter
units: 456180
value: 0.0

592203
type: LocalParameter
units: 456180
value: 0.0

592200
type: LocalParameter
units: 456180
value: 1000.0

592199
type: LocalParameter
units: 456180
value: 0.0

581573
type: Reaction
reactant: 614317
product: 614353
name: Tartrate/succinate antiporter (periplasm)
reactant: 614329
kinetic law: 614365
fast: false
reversible: true
product: 614341
notes: GENE_ASSOCIATION: b3063 SUBSYSTEM: Transport, Inner Membrane EC Number:

614317
type: SpeciesReference
stoichiometry: 1.0
species: 576070

576070
type: Species
notes: FORMULA: C4H4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Succinate

614353
type: SpeciesReference
stoichiometry: 1.0
species: 578124

578124
type: Species
notes: FORMULA: C4H4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Succinate

614329
type: SpeciesReference
stoichiometry: 1.0
species: 578130

578130
type: Species
notes: FORMULA: C4H4O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-tartrate

595625
type: LocalParameter
units: 456180
value: 0.0

595624
type: LocalParameter
units: 456180
value: 0.0

595622
type: LocalParameter
units: 456180
value: 1000.0

595621
type: LocalParameter
units: 456180
value: -1000.0

614341
type: SpeciesReference
stoichiometry: 1.0
species: 576136

576136
type: Species
notes: FORMULA: C4H4O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-tartrate

581253
type: Reaction
product: 600588
kinetic law: 600612
reversible: true
product: 600600
notes: GENE_ASSOCIATION: b2501 SUBSYSTEM: Oxidative Phosphorylation EC Number: 2.7.4.1
fast: false
reactant: 600564
name: polyphosphate kinase
reactant: 600576

600588
type: SpeciesReference
stoichiometry: 1.0
species: 574239

574239
type: Species
notes: FORMULA: C10H12N5O10P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: ADP

594450
type: LocalParameter
units: 456180
value: 0.0

594448
type: LocalParameter
units: 456180
value: 0.0

594447
type: LocalParameter
units: 456180
value: 1000.0

594445
type: LocalParameter
units: 456180
value: -1000.0

600600
type: SpeciesReference
stoichiometry: 1.0
species: 575833

575833
type: Species
notes: FORMULA: HO10P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Inorganic triphosphate

600564
type: SpeciesReference
stoichiometry: 1.0
species: 574373

574373
type: Species
notes: FORMULA: C10H12N5O13P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: ATP

600576
type: SpeciesReference
stoichiometry: 1.0
species: 575824

575824
type: Species
notes: FORMULA: HO7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Diphosphate

578570
type: Reaction
kinetic law: 464513
reactant: 464501
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: octadecanoate (n-C18:0) exchange

583134
type: LocalParameter
units: 456180
value: 0.0

583132
type: LocalParameter
units: 456180
value: 0.0

583131
type: LocalParameter
units: 456180
value: 1000.0

583129
type: LocalParameter
units: 456180
value: 0.0

464501
type: SpeciesReference
stoichiometry: 1.0
species: 577248

577248
type: Species
notes: FORMULA: C18H35O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: octadecanoate (n-C18:0)

579057
type: Reaction
kinetic law: 482255
notes: GENE_ASSOCIATION: b3018 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.3.1.51
reactant: 482219
fast: false
product: 482231
name: 1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1)
reactant: 482207
product: 482243
reversible: false

585283
type: LocalParameter
units: 456180
value: 0.0

585281
type: LocalParameter
units: 456180
value: 0.0

585280
type: LocalParameter
units: 456180
value: 1000.0

585278
type: LocalParameter
units: 456180
value: 0.0

482219
type: SpeciesReference
stoichiometry: 1.0
species: 576154

576154
type: Species
notes: FORMULA: C25H45N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)

482231
type: SpeciesReference
stoichiometry: 1.0
species: 574155

574155
type: Species
notes: FORMULA: C11H21N2O7PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: acyl carrier protein

482207
type: SpeciesReference
stoichiometry: 1.0
species: 573798

573798
type: Species
notes: FORMULA: C17H31O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-tetradec-7-enoyl-sn-glycerol 3-phosphate

482243
type: SpeciesReference
stoichiometry: 1.0
species: 575651

575651
type: Species
notes: FORMULA: C31H55O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate

580340
type: Reaction
product: 543738
name: ISC [4Fe-4S] Reduction
reactant: 543702
kinetic law: 543762
reactant: 543714
reversible: false
fast: false
product: 543750
reactant: 543726
notes: GENE_ASSOCIATION: b2529 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:

543738
type: SpeciesReference
stoichiometry: 1.0
species: 574763

543702
type: SpeciesReference
stoichiometry: 1.0
species: 574766

590591
type: LocalParameter
units: 456180
value: 0.0

590590
type: LocalParameter
units: 456180
value: 0.0

590588
type: LocalParameter
units: 456180
value: 1000.0

590587
type: LocalParameter
units: 456180
value: 0.0

543714
type: SpeciesReference
stoichiometry: 2.0
species: 575090

543750
type: SpeciesReference
stoichiometry: 1.0
species: 575261

575261
type: Species
notes: FORMULA: H4O2S10Fe4R CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: IscU with bound [4Fe-4S] cluster

543726
type: SpeciesReference
stoichiometry: 1.0
species: 575258

575258
type: Species
notes: FORMULA: O2S10Fe4R CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: IscU with two bound [2Fe-2S] clusters

574550
type: Species
notes: FORMULA: C10H12N5O12P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dATP

579383
type: Reaction
kinetic law: 498392
product: 498380
reactant: 498368
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: CO2 transport via diffusion (extracellular to periplasm)

586656
type: LocalParameter
units: 456180
value: 0.0

586654
type: LocalParameter
units: 456180
value: 0.0

586653
type: LocalParameter
units: 456180
value: 1000.0

586651
type: LocalParameter
units: 456180
value: -1000.0

498380
type: SpeciesReference
stoichiometry: 1.0
species: 577724

577724
type: Species
notes: FORMULA: CO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: CO2

498368
type: SpeciesReference
stoichiometry: 1.0
species: 576709

576709
type: Species
notes: FORMULA: CO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: CO2

575462
type: Species
notes: FORMULA: C1H1O1S1X CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: MoaD Protein with thiocarboxylate

581486
type: Reaction
kinetic law: 610738
product: 610725
product: 610713
reactant: 610701
notes: GENE_ASSOCIATION: b2366 SUBSYSTEM: Glycine and Serine Metabolism EC Number:
fast: false
reversible: false
name: D-serine deaminase

595301
type: LocalParameter
units: 456180
value: 0.0

595300
type: LocalParameter
units: 456180
value: 0.0

595298
type: LocalParameter
units: 456180
value: 1000.0

595297
type: LocalParameter
units: 456180
value: 0.0

610725
type: SpeciesReference
stoichiometry: 1.0
species: 575920

575920
type: Species
notes: FORMULA: C3H3O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Pyruvate

610713
type: SpeciesReference
stoichiometry: 1.0
species: 575534

575534
type: Species
notes: FORMULA: H4N CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ammonium

610701
type: SpeciesReference
stoichiometry: 1.0
species: 576013

576013
type: Species
notes: FORMULA: C3H7NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Serine

580407
type: Reaction
fast: false
notes: GENE_ASSOCIATION: b1215 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number: 4.1.2.16
reversible: false
reactant: 546821
product: 546833
name: 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase
product: 546845
reactant: 546796
kinetic law: 546857
reactant: 546809

546821
type: SpeciesReference
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species: 575711

575711
type: Species
notes: FORMULA: C3H2O6P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphoenolpyruvate

546833
type: SpeciesReference
stoichiometry: 1.0
species: 575285

575285
type: Species
notes: FORMULA: C8H12O11P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Deoxy-D-manno-octulosonate 8-phosphate

546845
type: SpeciesReference
stoichiometry: 1.0
species: 575785

575785
type: Species
notes: FORMULA: HO4P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphate

546796
type: SpeciesReference
stoichiometry: 1.0
species: 574335

574335
type: Species
notes: FORMULA: C5H9O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Arabinose 5-phosphate

590861
type: LocalParameter
units: 456180
value: 0.0

590859
type: LocalParameter
units: 456180
value: 0.0

590858
type: LocalParameter
units: 456180
value: 1000.0

590856
type: LocalParameter
units: 456180
value: 0.0

546809
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stoichiometry: 1.0
species: 575099

575099
type: Species
notes: FORMULA: H2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: H2O

578283
type: Reaction
kinetic law: 459900
reactant: 459888
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Arbutin exchange

582167
type: LocalParameter
units: 456180
value: 0.0

582166
type: LocalParameter
units: 456180
value: 0.0

582164
type: LocalParameter
units: 456180
value: 1000.0

582163
type: LocalParameter
units: 456180
value: 0.0

459888
type: SpeciesReference
stoichiometry: 1.0
species: 576643

576643
type: Species
notes: FORMULA: C12H16O7 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Arbutin

579640
type: Reaction
notes: GENE_ASSOCIATION: (b3860 and b1185) SUBSYSTEM: Unassigned EC Number:
reactant: 510580
name: DsbA protein reoxidation reaction (anaerobic)
reversible: false
kinetic law: 510616
product: 510604
fast: false
product: 510592
reactant: 510568

510580
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stoichiometry: 1.0
species: 577773

577773
type: Species
notes: FORMULA: XH2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: periplasmic protein disulfide isomerase I (reduced)

587709
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units: 456180
value: 0.0

587708
type: LocalParameter
units: 456180
value: 0.0

587706
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units: 456180
value: 1000.0

587705
type: LocalParameter
units: 456180
value: 0.0

510604
type: SpeciesReference
stoichiometry: 1.0
species: 577772

577772
type: Species
notes: FORMULA: X CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: periplasmic protein disulfide isomerase I (oxidized)

510592
type: SpeciesReference
stoichiometry: 1.0
species: 575483

575483
type: Species
notes: FORMULA: C51H74O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Menaquinol 8

510568
type: SpeciesReference
stoichiometry: 1.0
species: 575486

575486
type: Species
notes: FORMULA: C51H72O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Menaquinone 8

575992
type: Species
notes: FORMULA: C6H13O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Sorbitol 6-phosphate

581199
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.4
name: Phospholipase A2 (phosphatidylethanolamine, n-C14:0) (periplasm)
reactant: 598203
reactant: 598215
product: 598251
product: 598239
kinetic law: 598263
fast: false
product: 598227

598203
type: SpeciesReference
stoichiometry: 1.0
species: 577890

598215
type: SpeciesReference
stoichiometry: 1.0
species: 578039

578039
type: Species
notes: FORMULA: C33H66N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (ditetradecanoyl, n-C14:0)

598251
type: SpeciesReference
stoichiometry: 1.0
species: 578150

578150
type: Species
notes: FORMULA: C14H27O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: tetradecanoate (n-C14:0)

598239
type: SpeciesReference
stoichiometry: 1.0
species: 577887

577887
type: Species
notes: FORMULA: H CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: H+

594252
type: LocalParameter
units: 456180
value: 0.0

594250
type: LocalParameter
units: 456180
value: 0.0

594249
type: LocalParameter
units: 456180
value: 1000.0

594247
type: LocalParameter
units: 456180
value: 0.0

598227
type: SpeciesReference
stoichiometry: 1.0
species: 577521

577521
type: Species
notes: FORMULA: C19H40NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)

580436
type: Reaction
kinetic law: 548192
reversible: true
product: 548168
reactant: 548144
notes: GENE_ASSOCIATION: SUBSYSTEM: Methylglyoxal Metabolism EC Number: 1.1.1.77
fast: false
reactant: 548132
reactant: 548156
product: 548180
name: lacaldehyde reductase (R-propane-1,2-diol forming)

590983
type: LocalParameter
units: 456180
value: 0.0

590981
type: LocalParameter
units: 456180
value: 0.0

590980
type: LocalParameter
units: 456180
value: 1000.0

590978
type: LocalParameter
units: 456180
value: -1000.0

548168
type: SpeciesReference
stoichiometry: 1.0
species: 573774

573774
type: Species
notes: FORMULA: C3H8O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-Propane-1,2-diol

548144
type: SpeciesReference
stoichiometry: 1.0
species: 575300

575300
type: Species
notes: FORMULA: C3H6O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Lactaldehyde

548132
type: SpeciesReference
stoichiometry: 1.0
species: 575090

548156
type: SpeciesReference
stoichiometry: 1.0
species: 575522

575522
type: Species
notes: FORMULA: C21H27N7O14P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nicotinamide adenine dinucleotide - reduced

548180
type: SpeciesReference
stoichiometry: 1.0
species: 575519

575519
type: Species
notes: FORMULA: C21H26N7O14P2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nicotinamide adenine dinucleotide

579382
type: Reaction
fast: false
name: Chloramphenicol transport via TolC system
reactant: 498308
reactant: 498320
product: 498344
notes: GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)) SUBSYSTEM: Transport, Outer Membrane EC Number:
product: 498332
kinetic law: 498356
reversible: false

498308
type: SpeciesReference
stoichiometry: 1.0
species: 577721

577721
type: Species
notes: FORMULA: C11H12Cl2N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Chloramphenicol

498320
type: SpeciesReference
stoichiometry: 1.0
species: 577887

498344
type: SpeciesReference
stoichiometry: 1.0
species: 576703

576703
type: Species
notes: FORMULA: C11H12Cl2N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Chloramphenicol

498332
type: SpeciesReference
stoichiometry: 1.0
species: 575090

586650
type: LocalParameter
units: 456180
value: 0.0

586649
type: LocalParameter
units: 456180
value: 0.0

586647
type: LocalParameter
units: 456180
value: 1000.0

586646
type: LocalParameter
units: 456180
value: 0.0

578105
type: Species
notes: FORMULA: C43H58N4O12 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: rifampin

577419
type: Species
notes: FORMULA: C14H25O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: tetradecenoate (n-C14:1)

578196
type: Reaction
kinetic law: 456339
reactant: 456327
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: false
name: Sink needed to allow (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran to leave system

581866
type: LocalParameter
units: 456180
value: 0.0

581865
type: LocalParameter
units: 456180
value: 0.0

581864
type: LocalParameter
units: 456180
value: 1000.0

581863
type: LocalParameter
units: 456180
value: 0.0

456327
type: SpeciesReference
stoichiometry: 1.0
species: 575498

575498
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

574098
type: Species
notes: FORMULA: C4H9NO4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Hydroxy-L-threonine

579303
type: Reaction
reversible: true
reactant: 494535
reactant: 494560
product: 494584
reactant: 494547
notes: GENE_ASSOCIATION: b1270 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.5.1.17
kinetic law: 494596
name: cob(I)alamin adenosyltransferase
fast: false
product: 494572

494535
type: SpeciesReference
stoichiometry: 1.0
species: 574373

494560
type: SpeciesReference
stoichiometry: 1.0
species: 575090

494584
type: SpeciesReference
stoichiometry: 1.0
species: 575833

494547
type: SpeciesReference
stoichiometry: 1.0
species: 574421

574421
type: Species
notes: FORMULA: C62H88CoN13O14P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Cob(I)alamin

586326
type: LocalParameter
units: 456180
value: 0.0

586324
type: LocalParameter
units: 456180
value: 0.0

586323
type: LocalParameter
units: 456180
value: 1000.0

586321
type: LocalParameter
units: 456180
value: -1000.0

494572
type: SpeciesReference
stoichiometry: 1.0
species: 574237

574237
type: Species
notes: FORMULA: C72H100CoN18O17P CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Adenosylcobalamin

580049
type: Reaction
reactant: 530142
reactant: 530130
fast: false
kinetic law: 530190
notes: GENE_ASSOCIATION: b2551 SUBSYSTEM: Glycine and Serine Metabolism EC Number: 2.1.2.1
product: 530154
name: glycine hydroxymethyltransferase, reversible
product: 530178
reversible: true
product: 530166

530142
type: SpeciesReference
stoichiometry: 1.0
species: 576169

576169
type: Species
notes: FORMULA: C19H21N7O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5,6,7,8-Tetrahydrofolate

530130
type: SpeciesReference
stoichiometry: 1.0
species: 576016

576016
type: Species
notes: FORMULA: C3H7NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Serine

589380
type: LocalParameter
units: 456180
value: 0.0

589378
type: LocalParameter
units: 456180
value: 0.0

589377
type: LocalParameter
units: 456180
value: 1000.0

589375
type: LocalParameter
units: 456180
value: -1000.0

530154
type: SpeciesReference
stoichiometry: 1.0
species: 575012

575012
type: Species
notes: FORMULA: C2H5NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycine

530178
type: SpeciesReference
stoichiometry: 1.0
species: 575441

575441
type: Species
notes: FORMULA: C20H21N7O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5,10-Methylenetetrahydrofolate

530166
type: SpeciesReference
stoichiometry: 1.0
species: 575099

581456
type: Reaction
reversible: false
product: 609333
product: 609345
name: Succinylarginine dihydrolase
reactant: 609297
reactant: 609309
fast: false
kinetic law: 609369
notes: GENE_ASSOCIATION: b1745 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 2.6.1.69
product: 609357
reactant: 609321

609333
type: SpeciesReference
stoichiometry: 1.0
species: 574476

574476
type: Species
notes: FORMULA: CO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CO2

609345
type: SpeciesReference
stoichiometry: 2.0
species: 575534

609297
type: SpeciesReference
stoichiometry: 2.0
species: 575090

609309
type: SpeciesReference
stoichiometry: 2.0
species: 575099

595176
type: LocalParameter
units: 456180
value: 0.0

595174
type: LocalParameter
units: 456180
value: 0.0

595173
type: LocalParameter
units: 456180
value: 1000.0

595172
type: LocalParameter
units: 456180
value: 0.0

609357
type: SpeciesReference
stoichiometry: 1.0
species: 576085

576085
type: Species
notes: FORMULA: C9H15N2O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Succinyl-L-ornithine

609321
type: SpeciesReference
stoichiometry: 1.0
species: 576064

576064
type: Species
notes: FORMULA: C10H17N4O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Succinyl-L-arginine

577809
type: Species
notes: FORMULA: C27H42FeN9O12 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Ferrichrome

578739
type: Reaction
kinetic law: 467861
product: 467848
reactant: 467835
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0) transporter via facilitated diffusion (periplasm)

583746
type: LocalParameter
units: 456180
value: 0.0

583744
type: LocalParameter
units: 456180
value: 0.0

583743
type: LocalParameter
units: 456180
value: 1000.0

583741
type: LocalParameter
units: 456180
value: 0.0

467848
type: SpeciesReference
stoichiometry: 1.0
species: 573838

573838
type: Species
notes: FORMULA: C21H44NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)

467835
type: SpeciesReference
stoichiometry: 1.0
species: 577584

577584
type: Species
notes: FORMULA: C21H44NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)

580188
type: Reaction
reactant: 537056
reversible: false
notes: GENE_ASSOCIATION: b2964 SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 537104
reactant: 537068
product: 537092
name: guanosine transport in via proton symport (periplasm)
fast: false
product: 537080

537056
type: SpeciesReference
stoichiometry: 1.0
species: 577880

577880
type: Species
notes: FORMULA: C10H13N5O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Guanosine

589974
type: LocalParameter
units: 456180
value: 0.0

589972
type: LocalParameter
units: 456180
value: 0.0

589971
type: LocalParameter
units: 456180
value: 1000.0

589969
type: LocalParameter
units: 456180
value: 0.0

537068
type: SpeciesReference
stoichiometry: 1.0
species: 577887

537092
type: SpeciesReference
stoichiometry: 1.0
species: 575090

537080
type: SpeciesReference
stoichiometry: 1.0
species: 575072

575072
type: Species
notes: FORMULA: C10H13N5O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Guanosine

577083
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Idonate

579909
type: Reaction
fast: false
product: 522721
product: 522709
reactant: 522697
notes: GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
reactant: 522685
kinetic law: 522734
reversible: false
name: ferroxamine transport via ton system (extracellular)

522721
type: SpeciesReference
stoichiometry: 1.0
species: 577814

577814
type: Species
notes: FORMULA: C25H46FeN6O8 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: ferroxamine

522709
type: SpeciesReference
stoichiometry: 1.0
species: 575090

522697
type: SpeciesReference
stoichiometry: 1.0
species: 577887

522685
type: SpeciesReference
stoichiometry: 1.0
species: 576894

576894
type: Species
notes: FORMULA: C25H46FeN6O8 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: ferroxamine

588703
type: LocalParameter
units: 456180
value: 0.0

588702
type: LocalParameter
units: 456180
value: 0.0

588700
type: LocalParameter
units: 456180
value: 1000.0

588699
type: LocalParameter
units: 456180
value: 0.0

579266
type: Reaction
product: 492643
notes: GENE_ASSOCIATION: b0312 SUBSYSTEM: Unassigned EC Number: 1.2.1.8
product: 492655
fast: false
reactant: 492594
product: 492631
reactant: 492606
kinetic law: 492667
reversible: false
name: betaine-aldehyde dehydrogenase
reactant: 492618

492643
type: SpeciesReference
stoichiometry: 2.0
species: 575090

492655
type: SpeciesReference
stoichiometry: 1.0
species: 575528

575528
type: Species
notes: FORMULA: C21H26N7O17P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nicotinamide adenine dinucleotide phosphate - reduced

492594
type: SpeciesReference
stoichiometry: 1.0
species: 574379

574379
type: Species
notes: FORMULA: C5H12NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Betaine aldehyde

492631
type: SpeciesReference
stoichiometry: 1.0
species: 575018

575018
type: Species
notes: FORMULA: C5H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycine betaine

492606
type: SpeciesReference
stoichiometry: 1.0
species: 575099

586172
type: LocalParameter
units: 456180
value: 0.0

586170
type: LocalParameter
units: 456180
value: 0.0

586169
type: LocalParameter
units: 456180
value: 1000.0

586167
type: LocalParameter
units: 456180
value: 0.0

492618
type: SpeciesReference
stoichiometry: 1.0
species: 575525

575525
type: Species
notes: FORMULA: C21H25N7O17P3 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nicotinamide adenine dinucleotide phosphate

579302
type: Reaction
product: 494510
reversible: false
notes: GENE_ASSOCIATION: (b3966 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
reactant: 494486
kinetic law: 494523
reactant: 494474
product: 494498
fast: false
name: Cob(1)alamin transport via ton system (extermal)

494510
type: SpeciesReference
stoichiometry: 1.0
species: 577700

577700
type: Species
notes: FORMULA: C62H88CoN13O14P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cob(I)alamin

494486
type: SpeciesReference
stoichiometry: 1.0
species: 577887

586320
type: LocalParameter
units: 456180
value: 0.0

586319
type: LocalParameter
units: 456180
value: 0.0

586317
type: LocalParameter
units: 456180
value: 1000.0

586316
type: LocalParameter
units: 456180
value: 0.0

494474
type: SpeciesReference
stoichiometry: 1.0
species: 576682

576682
type: Species
notes: FORMULA: C62H88CoN13O14P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Cob(I)alamin

494498
type: SpeciesReference
stoichiometry: 1.0
species: 575090

580316
type: Reaction
reactant: 542598
reversible: false
kinetic law: 542634
product: 542610
fast: false
name: homoserine O-succinyltransferase
reactant: 542586
product: 542622
notes: GENE_ASSOCIATION: b4013 SUBSYSTEM: Methionine Metabolism EC Number: 2.3.1.46

542598
type: SpeciesReference
stoichiometry: 1.0
species: 576073

576073
type: Species
notes: FORMULA: C25H35N7O19P3S CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Succinyl-CoA

590498
type: LocalParameter
units: 456180
value: 0.0

590496
type: LocalParameter
units: 456180
value: 0.0

590495
type: LocalParameter
units: 456180
value: 1000.0

590493
type: LocalParameter
units: 456180
value: 0.0

542610
type: SpeciesReference
stoichiometry: 1.0
species: 574478

574478
type: Species
notes: FORMULA: C21H32N7O16P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Coenzyme A

542586
type: SpeciesReference
stoichiometry: 1.0
species: 575177

575177
type: Species
notes: FORMULA: C4H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Homoserine

542622
type: SpeciesReference
stoichiometry: 1.0
species: 576082

576082
type: Species
notes: FORMULA: C8H12NO6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: O-Succinyl-L-homoserine

579129
type: Reaction
reactant: 485654
fast: false
name: Amylomaltase (maltotetraose)
reactant: 485666
reversible: false
product: 485690
kinetic law: 485702
product: 485678
notes: GENE_ASSOCIATION: b3416 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.4.1.25

485654
type: SpeciesReference
stoichiometry: 1.0
species: 575366

575366
type: Species
notes: FORMULA: C12H22O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltose

485666
type: SpeciesReference
stoichiometry: 1.0
species: 575384

575384
type: Species
notes: FORMULA: C24H42O21 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltotetraose

485690
type: SpeciesReference
stoichiometry: 1.0
species: 575378

575378
type: Species
notes: FORMULA: C30H52O26 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltopentaose

585580
type: LocalParameter
units: 456180
value: 0.0

585578
type: LocalParameter
units: 456180
value: 0.0

585577
type: LocalParameter
units: 456180
value: 1000.0

585575
type: LocalParameter
units: 456180
value: 0.0

485678
type: SpeciesReference
stoichiometry: 1.0
species: 574970

574970
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucose

575345
type: Species
notes: FORMULA: C6H14N2OR CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lysine-tRNA (Lys)

578909
type: Reaction
product: 475574
fast: false
notes: GENE_ASSOCIATION: (b2342 or b3845) SUBSYSTEM: Membrane Lipid Metabolism EC Number: 2.3.1.16
reactant: 475562
reactant: 475550
reversible: true
product: 475586
kinetic law: 475598
name: acetyl-CoA C-acyltransferase (octanoyl-CoA) (r)

475574
type: SpeciesReference
stoichiometry: 1.0
species: 574036

574036
type: Species
notes: FORMULA: C31H48N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxodecanoyl-CoA

475562
type: SpeciesReference
stoichiometry: 1.0
species: 575573

575573
type: Species
notes: FORMULA: C29H46N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Octanoyl-CoA (n-C8:0CoA)

475550
type: SpeciesReference
stoichiometry: 1.0
species: 574187

574187
type: Species
notes: FORMULA: C23H34N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Acetyl-CoA

475586
type: SpeciesReference
stoichiometry: 1.0
species: 574478

584433
type: LocalParameter
units: 456180
value: 0.0

584432
type: LocalParameter
units: 456180
value: 0.0

584430
type: LocalParameter
units: 456180
value: 1000.0

584429
type: LocalParameter
units: 456180
value: -1000.0

574257
type: Species
notes: FORMULA: C9H12N5O13P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate

579265
type: Reaction
fast: false
notes: GENE_ASSOCIATION: b0312 SUBSYSTEM: Unassigned EC Number: 1.2.1.8
reactant: 492521
kinetic law: 492582
reversible: false
product: 492545
reactant: 492508
product: 492557
name: betaine-aldehyde dehydrogenase
reactant: 492533
product: 492569

492521
type: SpeciesReference
stoichiometry: 1.0
species: 575099

586166
type: LocalParameter
units: 456180
value: 0.0

586165
type: LocalParameter
units: 456180
value: 0.0

586163
type: LocalParameter
units: 456180
value: 1000.0

586162
type: LocalParameter
units: 456180
value: 0.0

492545
type: SpeciesReference
stoichiometry: 1.0
species: 575018

492508
type: SpeciesReference
stoichiometry: 1.0
species: 574379

492557
type: SpeciesReference
stoichiometry: 2.0
species: 575090

492533
type: SpeciesReference
stoichiometry: 1.0
species: 575519

492569
type: SpeciesReference
stoichiometry: 1.0
species: 575522

575815
type: Species
notes: FORMULA: C24H36N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Propanoyl-CoA

579197
type: Reaction
name: L-arabinose transport via proton antiport (periplasm)
reversible: false
reactant: 489095
product: 489131
kinetic law: 489143
notes: GENE_ASSOCIATION: b1528 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
product: 489119
reactant: 489107

489095
type: SpeciesReference
stoichiometry: 1.0
species: 574337

574337
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Arabinose

489131
type: SpeciesReference
stoichiometry: 1.0
species: 577679

577679
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Arabinose

585860
type: LocalParameter
units: 456180
value: 0.0

585859
type: LocalParameter
units: 456180
value: 0.0

585857
type: LocalParameter
units: 456180
value: 1000.0

585856
type: LocalParameter
units: 456180
value: 0.0

489119
type: SpeciesReference
stoichiometry: 1.0
species: 575090

489107
type: SpeciesReference
stoichiometry: 1.0
species: 577887

581118
type: Reaction
reactant: 589651
kinetic law: 589823
notes: GENE_ASSOCIATION: (b0418 or b1278) SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.27
reactant: 589676
fast: false
name: phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:1)
product: 589775
product: 589739
reversible: false

589651
type: SpeciesReference
stoichiometry: 1.0
species: 577890

593949
type: LocalParameter
units: 456180
value: 0.0

593948
type: LocalParameter
units: 456180
value: 0.0

593946
type: LocalParameter
units: 456180
value: 1000.0

593945
type: LocalParameter
units: 456180
value: 0.0

589676
type: SpeciesReference
stoichiometry: 1.0
species: 578063

578063
type: Species
notes: FORMULA: C34H61O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)

589775
type: SpeciesReference
stoichiometry: 1.0
species: 578076

578076
type: Species
notes: FORMULA: HO4P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphate

589739
type: SpeciesReference
stoichiometry: 1.0
species: 578052

578052
type: Species
notes: FORMULA: C34H62O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)

580941
type: Reaction
kinetic law: 571149
product: 571136
reactant: 571124
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: true
name: o2 transport via diffusion (periplasm)

593232
type: LocalParameter
units: 456180
value: 0.0

593229
type: LocalParameter
units: 456180
value: 0.0

593228
type: LocalParameter
units: 456180
value: 1000.0

593225
type: LocalParameter
units: 456180
value: -1000.0

571136
type: SpeciesReference
stoichiometry: 1.0
species: 575558

575558
type: Species
notes: FORMULA: O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: O2

571124
type: SpeciesReference
stoichiometry: 1.0
species: 578015

578015
type: Species
notes: FORMULA: O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: O2

576954
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Galactonate

575693
type: Species
notes: FORMULA: C33H66N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylethanolamine (ditetradecanoyl, n-C14:0)

577761
type: Species
notes: FORMULA: C3H6O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Dihydroxyacetone

580344
type: Reaction
kinetic law: 543933
product: 543920
reactant: 543907
notes: GENE_ASSOCIATION: b2265 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 5.4.99.6
fast: false
reversible: true
name: isochorismate synthase

590608
type: LocalParameter
units: 456180
value: 0.0

590606
type: LocalParameter
units: 456180
value: 0.0

590605
type: LocalParameter
units: 456180
value: 1000.0

590603
type: LocalParameter
units: 456180
value: -1000.0

543920
type: SpeciesReference
stoichiometry: 1.0
species: 575207

575207
type: Species
notes: FORMULA: C10H8O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Isochorismate

543907
type: SpeciesReference
stoichiometry: 1.0
species: 574460

574460
type: Species
notes: FORMULA: C10H8O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: chorismate

580854
type: Reaction
product: 567121
kinetic law: 567133
reactant: 567085
fast: false
name: Novobiocin transport via TolC system
reactant: 567097
notes: GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)) SUBSYSTEM: Transport, Outer Membrane EC Number:
product: 567109
reversible: false

567121
type: SpeciesReference
stoichiometry: 1.0
species: 577236

577236
type: Species
notes: FORMULA: C31H36N2O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: novobiocin

592796
type: LocalParameter
units: 456180
value: 0.0

592793
type: LocalParameter
units: 456180
value: 0.0

592792
type: LocalParameter
units: 456180
value: 1000.0

592789
type: LocalParameter
units: 456180
value: 0.0

567085
type: SpeciesReference
stoichiometry: 1.0
species: 577887

567097
type: SpeciesReference
stoichiometry: 1.0
species: 578006

578006
type: Species
notes: FORMULA: C31H36N2O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: novobiocin

567109
type: SpeciesReference
stoichiometry: 1.0
species: 575090

581081
type: Reaction
fast: false
product: 583987
reactant: 583806
kinetic law: 584011
reversible: false
product: 583903
product: 583951
reactant: 583745
name: phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)
reactant: 583818
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 583855

583987
type: SpeciesReference
stoichiometry: 1.0
species: 578052

583806
type: SpeciesReference
stoichiometry: 1.0
species: 575099

593812
type: LocalParameter
units: 456180
value: 0.0

593810
type: LocalParameter
units: 456180
value: 0.0

593809
type: LocalParameter
units: 456180
value: 1000.0

593807
type: LocalParameter
units: 456180
value: 0.0

583903
type: SpeciesReference
stoichiometry: 1.0
species: 575090

583951
type: SpeciesReference
stoichiometry: 1.0
species: 575785

583745
type: SpeciesReference
stoichiometry: 1.0
species: 574373

583818
type: SpeciesReference
stoichiometry: 1.0
species: 575720

575720
type: Species
notes: FORMULA: C34H62O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)

583855
type: SpeciesReference
stoichiometry: 1.0
species: 574239

578493
type: Reaction
kinetic law: 463279
reactant: 463267
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: myo-Inositol exchange

582859
type: LocalParameter
units: 456180
value: 0.0

582858
type: LocalParameter
units: 456180
value: 0.0

582857
type: LocalParameter
units: 456180
value: 1000.0

582856
type: LocalParameter
units: 456180
value: 0.0

463267
type: SpeciesReference
stoichiometry: 1.0
species: 577095

577095
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: myo-Inositol

577902
type: Species
notes: FORMULA: C6H11O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Hexanoate (n-C6:0)

580911
type: Reaction
product: 569601
kinetic law: 569613
reversible: false
product: 569577
reactant: 569565
notes: GENE_ASSOCIATION: (b1759 or b2781) SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
name: Nucleoside triphosphate pyrophosphorylase (ctp)
reactant: 569553
fast: false
product: 569589

569601
type: SpeciesReference
stoichiometry: 1.0
species: 575824

593068
type: LocalParameter
units: 456180
value: 0.0

593067
type: LocalParameter
units: 456180
value: 0.0

593064
type: LocalParameter
units: 456180
value: 1000.0

593063
type: LocalParameter
units: 456180
value: 0.0

569577
type: SpeciesReference
stoichiometry: 1.0
species: 574474

569565
type: SpeciesReference
stoichiometry: 1.0
species: 575099

569553
type: SpeciesReference
stoichiometry: 1.0
species: 574519

574519
type: Species
notes: FORMULA: C9H12N3O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CTP

569589
type: SpeciesReference
stoichiometry: 1.0
species: 575090

580677
type: Reaction
reversible: false
name: Minocycline transport via TolC system
reactant: 559563
reactant: 559575
product: 559600
product: 559587
notes: GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)) SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
kinetic law: 559612

559563
type: SpeciesReference
stoichiometry: 1.0
species: 577887

559575
type: SpeciesReference
stoichiometry: 1.0
species: 577959

577959
type: Species
notes: FORMULA: C23H27N3O7 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: minocycline

559600
type: SpeciesReference
stoichiometry: 1.0
species: 577188

577188
type: Species
notes: FORMULA: C23H27N3O7 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: minocycline

559587
type: SpeciesReference
stoichiometry: 1.0
species: 575090

591978
type: LocalParameter
units: 456180
value: 0.0

591977
type: LocalParameter
units: 456180
value: 0.0

591974
type: LocalParameter
units: 456180
value: 1000.0

591973
type: LocalParameter
units: 456180
value: 0.0

574313
type: Species
notes: FORMULA: C20H24N10O22P5 CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: P1,P5-Bis(5'-adenosyl) pentaphosphate

580824
type: Reaction
product: 565746
kinetic law: 565771
notes: GENE_ASSOCIATION: (b4390 or b0639) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.7.1
reactant: 565734
reactant: 565710
fast: false
reactant: 565722
name: nicotinamide-nucleotide adenylyltransferase
reversible: false
product: 565759

565746
type: SpeciesReference
stoichiometry: 1.0
species: 575519

592650
type: LocalParameter
units: 456180
value: 0.0

592649
type: LocalParameter
units: 456180
value: 0.0

592646
type: LocalParameter
units: 456180
value: 1000.0

592645
type: LocalParameter
units: 456180
value: 0.0

565734
type: SpeciesReference
stoichiometry: 1.0
species: 575543

575543
type: Species
notes: FORMULA: C11H14N2O8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: NMN

565710
type: SpeciesReference
stoichiometry: 1.0
species: 574373

565722
type: SpeciesReference
stoichiometry: 1.0
species: 575090

565759
type: SpeciesReference
stoichiometry: 1.0
species: 575824

579307
type: Reaction
product: 494827
reactant: 494755
product: 494815
reactant: 494779
reactant: 494791
product: 494851
reversible: false
notes: GENE_ASSOCIATION: (b0032 and b0033) SUBSYSTEM: Arginine and Proline Metabolism EC Number: 6.3.5.5
reactant: 494767
product: 494839
fast: false
product: 494803
name: carbamoyl-phosphate synthase (glutamine-hydrolysing)
kinetic law: 494863

494827
type: SpeciesReference
stoichiometry: 1.0
species: 574991

574991
type: Species
notes: FORMULA: C5H8NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutamate

494755
type: SpeciesReference
stoichiometry: 2.0
species: 574373

494815
type: SpeciesReference
stoichiometry: 1.0
species: 574425

574425
type: Species
notes: FORMULA: CH2NO5P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Carbamoyl phosphate

494779
type: SpeciesReference
stoichiometry: 1.0
species: 575099

494791
type: SpeciesReference
stoichiometry: 1.0
species: 575108

575108
type: Species
notes: FORMULA: CHO3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Bicarbonate

494851
type: SpeciesReference
stoichiometry: 1.0
species: 575785

494767
type: SpeciesReference
stoichiometry: 1.0
species: 574982

574982
type: Species
notes: FORMULA: C5H10N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Glutamine

494839
type: SpeciesReference
stoichiometry: 2.0
species: 575090

494803
type: SpeciesReference
stoichiometry: 2.0
species: 574239

586342
type: LocalParameter
units: 456180
value: 0.0

586341
type: LocalParameter
units: 456180
value: 0.0

586339
type: LocalParameter
units: 456180
value: 1000.0

586338
type: LocalParameter
units: 456180
value: 0.0

581327
type: Reaction
reactant: 603786
product: 603834
product: 603822
product: 603810
reactant: 603798
name: Phosphatidylserine syntase (n-C16:1)
reversible: false
fast: false
notes: GENE_ASSOCIATION: b2585 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.7.8.8
kinetic law: 603846

603786
type: SpeciesReference
stoichiometry: 1.0
species: 574439

574439
type: Species
notes: FORMULA: C44H75N3O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CDP-1,2-dihexadec-9-enoylglycerol

603834
type: SpeciesReference
stoichiometry: 1.0
species: 575887

575887
type: Species
notes: FORMULA: C38H69N1O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylserine (dihexadec-9-enoyl, n-C16:1)

603822
type: SpeciesReference
stoichiometry: 1.0
species: 575090

603810
type: SpeciesReference
stoichiometry: 1.0
species: 574474

603798
type: SpeciesReference
stoichiometry: 1.0
species: 576016

594725
type: LocalParameter
units: 456180
value: 0.0

594723
type: LocalParameter
units: 456180
value: 0.0

594722
type: LocalParameter
units: 456180
value: 1000.0

594720
type: LocalParameter
units: 456180
value: 0.0

579820
type: Reaction
fast: false
product: 517867
kinetic law: 517879
reactant: 517819
reactant: 517782
reversible: false
notes: GENE_ASSOCIATION: (b1805 or b1701) SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 6.2.1.3
reactant: 517794
name: fatty-acid-CoA ligase (octadecenoate transport via vectoral Co-A coupling)
product: 517843
product: 517831
reactant: 517807
product: 517855

517867
type: SpeciesReference
stoichiometry: 1.0
species: 575824

588335
type: LocalParameter
units: 456180
value: 0.0

588333
type: LocalParameter
units: 456180
value: 0.0

588332
type: LocalParameter
units: 456180
value: 1000.0

588330
type: LocalParameter
units: 456180
value: 0.0

517819
type: SpeciesReference
stoichiometry: 1.0
species: 578019

578019
type: Species
notes: FORMULA: C18H33O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: octadecenoate (n-C18:1)

517782
type: SpeciesReference
stoichiometry: 1.0
species: 574373

517794
type: SpeciesReference
stoichiometry: 1.0
species: 574478

517843
type: SpeciesReference
stoichiometry: 1.0
species: 575090

517831
type: SpeciesReference
stoichiometry: 1.0
species: 574295

574295
type: Species
notes: FORMULA: C10H12N5O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: AMP

517807
type: SpeciesReference
stoichiometry: 1.0
species: 577887

517855
type: SpeciesReference
stoichiometry: 1.0
species: 575606

575606
type: Species
notes: FORMULA: C39H64N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Octadecenoyl-CoA (n-C18:1CoA)

575941
type: Species
notes: FORMULA: C5H9O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: alpha-D-Ribose 5-phosphate

575273
type: Species
notes: FORMULA: C8H13O8 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Deoxy-D-manno-2-octulosonate

576796
type: Species
notes: FORMULA: C8H12NO2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Dopamine

581000
type: Reaction
product: 573696
reversible: false
kinetic law: 573720
name: pyrroline-5-carboxylate reductase
reactant: 573660
notes: GENE_ASSOCIATION: b0386 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 1.5.1.2
fast: false
reactant: 573672
reactant: 573684
product: 573708

573696
type: SpeciesReference
stoichiometry: 1.0
species: 575525

593504
type: LocalParameter
units: 456180
value: 0.0

593503
type: LocalParameter
units: 456180
value: 0.0

593500
type: LocalParameter
units: 456180
value: 1000.0

593499
type: LocalParameter
units: 456180
value: 0.0

573660
type: SpeciesReference
stoichiometry: 1.0
species: 573796

573796
type: Species
notes: FORMULA: C5H6NO2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-Pyrroline-5-carboxylate

573672
type: SpeciesReference
stoichiometry: 2.0
species: 575090

573684
type: SpeciesReference
stoichiometry: 1.0
species: 575528

573708
type: SpeciesReference
stoichiometry: 1.0
species: 575863

575863
type: Species
notes: FORMULA: C5H9NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Proline

576751
type: Species
notes: FORMULA: C3H7NO2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Cysteine

575429
type: Species
notes: FORMULA: C5H10NOSR CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Methionyl-tRNA (Met)

575267
type: Species
notes: FORMULA: C10H11N4O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: ITP

578159
type: Species
notes: FORMULA: C9H10NO6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphotyrosine

579603
type: Reaction
kinetic law: 508950
product: 508938
product: 508926
reactant: 508914
notes: GENE_ASSOCIATION: b3389 SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 4.2.3.4
fast: false
reversible: false
name: 3-dehydroquinate synthase

587557
type: LocalParameter
units: 456180
value: 0.0

587555
type: LocalParameter
units: 456180
value: 0.0

587554
type: LocalParameter
units: 456180
value: 1000.0

587552
type: LocalParameter
units: 456180
value: 0.0

508938
type: SpeciesReference
stoichiometry: 1.0
species: 575785

508926
type: SpeciesReference
stoichiometry: 1.0
species: 573967

573967
type: Species
notes: FORMULA: C7H9O6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Dehydroquinate

508914
type: SpeciesReference
stoichiometry: 1.0
species: 573868

573868
type: Species
notes: FORMULA: C7H10O10P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate

580470
type: Reaction
product: 549991
notes: GENE_ASSOCIATION: b0494 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5
reactant: 549943
product: 549967
fast: false
kinetic law: 550003
reactant: 549955
name: Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm)
reversible: false
product: 549979

549991
type: SpeciesReference
stoichiometry: 1.0
species: 578150

549943
type: SpeciesReference
stoichiometry: 1.0
species: 577569

577569
type: Species
notes: FORMULA: C17H33O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-tetradecanoyl-sn-glycerol 3-phosphate

549967
type: SpeciesReference
stoichiometry: 1.0
species: 577875

577875
type: Species
notes: FORMULA: C3H7O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Glycerol 3-phosphate

591126
type: LocalParameter
units: 456180
value: 0.0

591124
type: LocalParameter
units: 456180
value: 0.0

591123
type: LocalParameter
units: 456180
value: 1000.0

591121
type: LocalParameter
units: 456180
value: 0.0

549955
type: SpeciesReference
stoichiometry: 1.0
species: 577890

549979
type: SpeciesReference
stoichiometry: 1.0
species: 577887

575222
type: Species
notes: FORMULA: C6H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Isoleucine

575588
type: Species
notes: FORMULA: C18H34O5P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Octadecanoyl-phosphate (n-C18:1)

578622
type: Reaction
kinetic law: 465369
reactant: 465357
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: sulfur dioxide exchange

583326
type: LocalParameter
units: 456180
value: 0.0

583324
type: LocalParameter
units: 456180
value: 0.0

583323
type: LocalParameter
units: 456180
value: 1000.0

583321
type: LocalParameter
units: 456180
value: 0.0

465357
type: SpeciesReference
stoichiometry: 1.0
species: 577353

577353
type: Species
notes: FORMULA: O2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: sulfur dioxide

577656
type: Species
notes: FORMULA: C10H13N5O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Adenosine

579632
type: Reaction
kinetic law: 510241
product: 510229
reactant: 510217
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0929 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Doxorubicin transport via diffusion (extracellular to periplasm)

587676
type: LocalParameter
units: 456180
value: 0.0

587675
type: LocalParameter
units: 456180
value: 0.0

587673
type: LocalParameter
units: 456180
value: 1000.0

587672
type: LocalParameter
units: 456180
value: -1000.0

510229
type: SpeciesReference
stoichiometry: 1.0
species: 577770

577770
type: Species
notes: FORMULA: C27H29NO11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: doxorubicin

510217
type: SpeciesReference
stoichiometry: 1.0
species: 576799

576799
type: Species
notes: FORMULA: C27H29NO11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: doxorubicin

578535
type: Reaction
kinetic law: 463957
reactant: 463945
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-methionine-R-sulfoxide exchange

583010
type: LocalParameter
units: 456180
value: 0.0

583009
type: LocalParameter
units: 456180
value: 0.0

583007
type: LocalParameter
units: 456180
value: 1000.0

583006
type: LocalParameter
units: 456180
value: 0.0

463945
type: SpeciesReference
stoichiometry: 1.0
species: 577179

577179
type: Species
notes: FORMULA: C5H11NO3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-methionine-R-sulfoxide

574676
type: Species
notes: FORMULA: X CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: fused thiol:disulfide interchange protein (oxidized)

577191
type: Species
notes: FORMULA: C6H6O24P6 CHARGE: -12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: myo-Inositol hexakisphosphate

580926
type: Reaction
reversible: false
reactant: 570289
kinetic law: 570349
name: nitrite Reductase (Menaquinole-8, periplasm)
reactant: 570277
product: 570325
product: 570313
product: 570337
reactant: 570301
fast: false
notes: GENE_ASSOCIATION: (b4070 and b4071 and b4072 and b4073) SUBSYSTEM: Nitrogen Metabolism EC Number:

570289
type: SpeciesReference
stoichiometry: 2.0
species: 577887

593138
type: LocalParameter
units: 456180
value: 0.0

593137
type: LocalParameter
units: 456180
value: 0.0

593134
type: LocalParameter
units: 456180
value: 1000.0

593133
type: LocalParameter
units: 456180
value: 0.0

570277
type: SpeciesReference
stoichiometry: 3.0
species: 575483

570325
type: SpeciesReference
stoichiometry: 2.0
species: 577890

570313
type: SpeciesReference
stoichiometry: 3.0
species: 575486

570337
type: SpeciesReference
stoichiometry: 1.0
species: 577997

570301
type: SpeciesReference
stoichiometry: 1.0
species: 578003

578003
type: Species
notes: FORMULA: NO2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Nitrite

578448
type: Reaction
kinetic law: 462557
reactant: 462545
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Glycine betaine exchange

582715
type: LocalParameter
units: 456180
value: 0.0

582714
type: LocalParameter
units: 456180
value: 0.0

582713
type: LocalParameter
units: 456180
value: 1000.0

582712
type: LocalParameter
units: 456180
value: 0.0

462545
type: SpeciesReference
stoichiometry: 1.0
species: 577005

577005
type: Species
notes: FORMULA: C5H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycine betaine

580308
type: Reaction
kinetic law: 542282
product: 542270
reactant: 542258
notes: GENE_ASSOCIATION: b0508 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.3.1.22
fast: false
reversible: true
name: hydroxypyruvate isomerase

590470
type: LocalParameter
units: 456180
value: 0.0

590469
type: LocalParameter
units: 456180
value: 0.0

590467
type: LocalParameter
units: 456180
value: 1000.0

590466
type: LocalParameter
units: 456180
value: -1000.0

542270
type: SpeciesReference
stoichiometry: 1.0
species: 573896

573896
type: Species
notes: FORMULA: C3H3O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Hydroxy-3-oxopropanoate

542258
type: SpeciesReference
stoichiometry: 1.0
species: 575186

575186
type: Species
notes: FORMULA: C3H3O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hydroxypyruvate

579533
type: Reaction
kinetic law: 505856
fast: false
reactant: 505808
product: 505832
product: 505820
notes: GENE_ASSOCIATION: b3041 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
product: 505844
name: 3,4-Dihydroxy-2-butanone-4-phosphate synthase

587276
type: LocalParameter
units: 456180
value: 0.0

587275
type: LocalParameter
units: 456180
value: 0.0

587273
type: LocalParameter
units: 456180
value: 1000.0

587272
type: LocalParameter
units: 456180
value: 0.0

505808
type: SpeciesReference
stoichiometry: 1.0
species: 575977

575977
type: Species
notes: FORMULA: C5H9O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Ribulose 5-phosphate

505832
type: SpeciesReference
stoichiometry: 1.0
species: 574829

574829
type: Species
notes: FORMULA: CH1O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Formate

505820
type: SpeciesReference
stoichiometry: 1.0
species: 574552

574552
type: Species
notes: FORMULA: C4H7O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3,4-dihydroxy-2-butanone 4-phosphate

505844
type: SpeciesReference
stoichiometry: 1.0
species: 575090

581733
type: Reaction
kinetic law: 621233
product: 621221
reactant: 621209
notes: GENE_ASSOCIATION: SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
fast: false
reversible: false
name: undecaprenyl phosphate transport (cytoplasm to periplasm)

596219
type: LocalParameter
units: 456180
value: 0.0

596218
type: LocalParameter
units: 456180
value: 0.0

596216
type: LocalParameter
units: 456180
value: 1000.0

596215
type: LocalParameter
units: 456180
value: 0.0

621221
type: SpeciesReference
stoichiometry: 1.0
species: 576367

576367
type: Species
notes: FORMULA: C55H89O4P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Undecaprenyl phosphate

621209
type: SpeciesReference
stoichiometry: 1.0
species: 578165

578165
type: Species
notes: FORMULA: C55H89O4P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Undecaprenyl phosphate

579608
type: Reaction
kinetic law: 509131
product: 509119
reactant: 509107
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: deoxyinosine transport via diffusion (extracellular to periplasm)

587578
type: LocalParameter
units: 456180
value: 0.0

587576
type: LocalParameter
units: 456180
value: 0.0

587575
type: LocalParameter
units: 456180
value: 1000.0

587573
type: LocalParameter
units: 456180
value: -1000.0

509119
type: SpeciesReference
stoichiometry: 1.0
species: 577764

577764
type: Species
notes: FORMULA: C10H12N4O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Deoxyinosine

509107
type: SpeciesReference
stoichiometry: 1.0
species: 576787

576787
type: Species
notes: FORMULA: C10H12N4O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Deoxyinosine

574427
type: Species
notes: FORMULA: Cd CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Cadmium

574343
type: Species
notes: FORMULA: C22H33N4O13 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: aerobactin minus Fe3

574054
type: Species
notes: FORMULA: C19H33N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxooctanoyl-[acyl-carrier protein]

579637
type: Reaction
kinetic law: 510496
product: 510484
product: 510472
reactant: 510460
notes: GENE_ASSOCIATION: b4381 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.1.2.4
fast: false
reversible: false
name: deoxyribose-phosphate aldolase

587698
type: LocalParameter
units: 456180
value: 0.0

587697
type: LocalParameter
units: 456180
value: 0.0

587695
type: LocalParameter
units: 456180
value: 1000.0

587694
type: LocalParameter
units: 456180
value: 0.0

510484
type: SpeciesReference
stoichiometry: 1.0
species: 574865

574865
type: Species
notes: FORMULA: C3H5O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glyceraldehyde 3-phosphate

510472
type: SpeciesReference
stoichiometry: 1.0
species: 574183

574183
type: Species
notes: FORMULA: C2H4O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Acetaldehyde

510460
type: SpeciesReference
stoichiometry: 1.0
species: 573890

573890
type: Species
notes: FORMULA: C5H9O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Deoxy-D-ribose 5-phosphate

577158
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Mannose

575036
type: Species
notes: FORMULA: C6H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: glycogen

579787
type: Reaction
kinetic law: 515770
product: 515758
reactant: 515745
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: fructose 6-phosphate transport via diffusion (extracellular to periplasm)

588197
type: LocalParameter
units: 456180
value: 0.0

588196
type: LocalParameter
units: 456180
value: 0.0

588194
type: LocalParameter
units: 456180
value: 1000.0

588193
type: LocalParameter
units: 456180
value: -1000.0

515758
type: SpeciesReference
stoichiometry: 1.0
species: 577798

577798
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Fructose 6-phosphate

515745
type: SpeciesReference
stoichiometry: 1.0
species: 576861

576861
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Fructose 6-phosphate

581214
type: Reaction
reactant: 598945
product: 598970
kinetic law: 598994
reversible: false
fast: false
product: 598982
name: Phospholipase A2 (phosphatidylglycerol, n-C16:1) (periplasm)
reactant: 598932
product: 598957
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.4

598945
type: SpeciesReference
stoichiometry: 1.0
species: 578055

578055
type: Species
notes: FORMULA: C38H70O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)

598970
type: SpeciesReference
stoichiometry: 1.0
species: 577887

594307
type: LocalParameter
units: 456180
value: 0.0

594305
type: LocalParameter
units: 456180
value: 0.0

594304
type: LocalParameter
units: 456180
value: 1000.0

594302
type: LocalParameter
units: 456180
value: 0.0

598982
type: SpeciesReference
stoichiometry: 1.0
species: 577896

577896
type: Species
notes: FORMULA: C16H29O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Hexadecenoate (n-C16:1)

598932
type: SpeciesReference
stoichiometry: 1.0
species: 577890

598957
type: SpeciesReference
stoichiometry: 1.0
species: 577551

577551
type: Species
notes: FORMULA: C22H42O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)

574586
type: Species
notes: FORMULA: C12H24O5P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dodecanoly-phosphate (n-C12:0)

578687
type: Reaction
kinetic law: 466410
reactant: 466398
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Zinc exchange

583555
type: LocalParameter
units: 456180
value: 0.0

583554
type: LocalParameter
units: 456180
value: 0.0

583552
type: LocalParameter
units: 456180
value: 1000.0

583551
type: LocalParameter
units: 456180
value: -1000.0

466398
type: SpeciesReference
stoichiometry: 1.0
species: 577482

577482
type: Species
notes: FORMULA: Zn CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Zinc

575282
type: Species
notes: FORMULA: C100H176N2O38P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: KDO(2)-lipid IV(A) with palmitoleoyl

581300
type: Reaction
fast: false
reversible: false
notes: GENE_ASSOCIATION: b3370 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 602714
kinetic law: 602750
name: psicoselysine transport via proton symport (periplasm)
product: 602738
product: 602726
reactant: 602702

602714
type: SpeciesReference
stoichiometry: 1.0
species: 578091

578091
type: Species
notes: FORMULA: C12H25N2O7 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: psicoselysine

594626
type: LocalParameter
units: 456180
value: 0.0

594624
type: LocalParameter
units: 456180
value: 0.0

594623
type: LocalParameter
units: 456180
value: 1000.0

594621
type: LocalParameter
units: 456180
value: 0.0

602738
type: SpeciesReference
stoichiometry: 1.0
species: 575896

575896
type: Species
notes: FORMULA: C12H25N2O7 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: psicoselysine

602726
type: SpeciesReference
stoichiometry: 1.0
species: 575090

602702
type: SpeciesReference
stoichiometry: 1.0
species: 577887

581213
type: Reaction
reactant: 598859
reactant: 598871
product: 598896
product: 598884
product: 598908
fast: false
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.4
kinetic law: 598920
reversible: false
name: Phospholipase A2 (phosphatidylglycerol, n-C16:0) (periplasm)

598859
type: SpeciesReference
stoichiometry: 1.0
species: 577890

598871
type: SpeciesReference
stoichiometry: 1.0
species: 578054

578054
type: Species
notes: FORMULA: C38H74O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dihexadecanoyl, n-C16:0)

598896
type: SpeciesReference
stoichiometry: 1.0
species: 577887

598884
type: SpeciesReference
stoichiometry: 1.0
species: 577548

577548
type: Species
notes: FORMULA: C22H44O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)

598908
type: SpeciesReference
stoichiometry: 1.0
species: 577895

577895
type: Species
notes: FORMULA: C16H31O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Hexadecanoate (n-C16:0)

594301
type: LocalParameter
units: 456180
value: 0.0

594300
type: LocalParameter
units: 456180
value: 0.0

594298
type: LocalParameter
units: 456180
value: 1000.0

594297
type: LocalParameter
units: 456180
value: 0.0

580779
type: Reaction
reactant: 563777
name: NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)
reversible: false
product: 563813
reactant: 563765
notes: GENE_ASSOCIATION: b1109 SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.6.5.3
kinetic law: 563825
reactant: 563789
fast: false
product: 563801

563777
type: SpeciesReference
stoichiometry: 1.0
species: 575090

563813
type: SpeciesReference
stoichiometry: 1.0
species: 575519

563765
type: SpeciesReference
stoichiometry: 1.0
species: 573884

573884
type: Species
notes: FORMULA: C50H70O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Demethylmenaquinone 8

592418
type: LocalParameter
units: 456180
value: 0.0

592416
type: LocalParameter
units: 456180
value: 0.0

592415
type: LocalParameter
units: 456180
value: 1000.0

592412
type: LocalParameter
units: 456180
value: 0.0

563789
type: SpeciesReference
stoichiometry: 1.0
species: 575522

563801
type: SpeciesReference
stoichiometry: 1.0
species: 573886

573886
type: Species
notes: FORMULA: C50H72O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Demethylmenaquinol 8

580610
type: Reaction
kinetic law: 556716
product: 556704
product: 556692
reactant: 556680
notes: GENE_ASSOCIATION: (b0084 or b0635 or b0149 or b3396) SUBSYSTEM: Murein Biosynthesis EC Number:
fast: false
reversible: false
name: murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)

591692
type: LocalParameter
units: 456180
value: 0.0

591691
type: LocalParameter
units: 456180
value: 0.0

591689
type: LocalParameter
units: 456180
value: 1000.0

591688
type: LocalParameter
units: 456180
value: 0.0

556704
type: SpeciesReference
stoichiometry: 1.0
species: 577989

577989
type: Species
notes: FORMULA: C77H117N15O40 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)

556692
type: SpeciesReference
stoichiometry: 1.0
species: 577664

577664
type: Species
notes: FORMULA: C3H7NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Alanine

556680
type: SpeciesReference
stoichiometry: 1.0
species: 577985

577985
type: Species
notes: FORMULA: C80H124N16O42 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)

581132
type: Reaction
reactant: 591653
product: 591728
reversible: false
kinetic law: 591848
product: 591836
product: 591776
reactant: 591617
fast: false
name: Phosphatidylglycerol synthase (n-C12:0)
notes: GENE_ASSOCIATION: b1912 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.7.8.5

591653
type: SpeciesReference
stoichiometry: 1.0
species: 575030

575030
type: Species
notes: FORMULA: C3H7O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycerol 3-phosphate

591728
type: SpeciesReference
stoichiometry: 1.0
species: 574474

593999
type: LocalParameter
units: 456180
value: 0.0

593997
type: LocalParameter
units: 456180
value: 0.0

593996
type: LocalParameter
units: 456180
value: 1000.0

593994
type: LocalParameter
units: 456180
value: 0.0

591836
type: SpeciesReference
stoichiometry: 1.0
species: 575737

575737
type: Species
notes: FORMULA: C30H57O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)

591776
type: SpeciesReference
stoichiometry: 1.0
species: 575090

591617
type: SpeciesReference
stoichiometry: 1.0
species: 574437

574437
type: Species
notes: FORMULA: C36H63N3O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CDP-1,2-didodecanoylglycerol

576712
type: Species
notes: FORMULA: Co CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Co2+

579756
type: Reaction
kinetic law: 514425
product: 514413
product: 514400
reactant: 514388
notes: GENE_ASSOCIATION: b1850 SUBSYSTEM: Pentose Phosphate Pathway EC Number: 4.1.2.14
fast: false
reversible: false
name: 2-dehydro-3-deoxy-phosphogluconate aldolase

588071
type: LocalParameter
units: 456180
value: 0.0

588069
type: LocalParameter
units: 456180
value: 0.0

588068
type: LocalParameter
units: 456180
value: 1000.0

588066
type: LocalParameter
units: 456180
value: 0.0

514413
type: SpeciesReference
stoichiometry: 1.0
species: 575920

514400
type: SpeciesReference
stoichiometry: 1.0
species: 574865

514388
type: SpeciesReference
stoichiometry: 1.0
species: 573872

573872
type: Species
notes: FORMULA: C6H8O9P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Dehydro-3-deoxy-D-gluconate 6-phosphate

579688
type: Reaction
kinetic law: 511074
notes: GENE_ASSOCIATION: b1098 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.9
name: dTMP kinase
product: 511062
reactant: 511026
reactant: 511038
product: 511050
reversible: true
fast: false

587753
type: LocalParameter
units: 456180
value: 0.0

587752
type: LocalParameter
units: 456180
value: 0.0

587750
type: LocalParameter
units: 456180
value: 1000.0

587749
type: LocalParameter
units: 456180
value: -1000.0

511062
type: SpeciesReference
stoichiometry: 1.0
species: 574688

574688
type: Species
notes: FORMULA: C10H13N2O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTDP

511026
type: SpeciesReference
stoichiometry: 1.0
species: 574373

511038
type: SpeciesReference
stoichiometry: 1.0
species: 574709

574709
type: Species
notes: FORMULA: C10H13N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dTMP

511050
type: SpeciesReference
stoichiometry: 1.0
species: 574239

574658
type: Species
notes: FORMULA: C13H18N4O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 6,7-Dimethyl-8-(1-D-ribityl)lumazine

579921
type: Reaction
reactant: 523329
notes: GENE_ASSOCIATION: b3844 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.5.1.30
fast: false
reactant: 523317
product: 523353
reversible: false
name: flavin reductase (NAD)
product: 523365
reactant: 523341
kinetic law: 523377

523329
type: SpeciesReference
stoichiometry: 1.0
species: 575522

523317
type: SpeciesReference
stoichiometry: 1.0
species: 575090

523353
type: SpeciesReference
stoichiometry: 1.0
species: 575519

523365
type: SpeciesReference
stoichiometry: 1.0
species: 575947

575947
type: Species
notes: FORMULA: C17H22N4O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Reduced riboflavin

523341
type: SpeciesReference
stoichiometry: 1.0
species: 575965

575965
type: Species
notes: FORMULA: C17H20N4O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Riboflavin

588753
type: LocalParameter
units: 456180
value: 0.0

588751
type: LocalParameter
units: 456180
value: 0.0

588750
type: LocalParameter
units: 456180
value: 1000.0

588748
type: LocalParameter
units: 456180
value: 0.0

579687
type: Reaction
kinetic law: 511014
product: 511001
product: 510989
reactant: 510977
notes: GENE_ASSOCIATION: b4122 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.2.1.81
fast: false
reversible: false
name: D(-)-tartrate dehydratase

587748
type: LocalParameter
units: 456180
value: 0.0

587746
type: LocalParameter
units: 456180
value: 0.0

587745
type: LocalParameter
units: 456180
value: 1000.0

587743
type: LocalParameter
units: 456180
value: 0.0

511001
type: SpeciesReference
stoichiometry: 1.0
species: 575564

575564
type: Species
notes: FORMULA: C4H2O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Oxaloacetate

510989
type: SpeciesReference
stoichiometry: 1.0
species: 575099

510977
type: SpeciesReference
stoichiometry: 1.0
species: 576133

576133
type: Species
notes: FORMULA: C4H4O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-tartrate

577437
type: Species
notes: FORMULA: C17H25N3O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: UDP-N-acetyl-D-glucosamine

574034
type: Species
notes: FORMULA: C29H51N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]

581421
type: Reaction
kinetic law: 607552
product: 607540
product: 607528
reactant: 607516
notes: GENE_ASSOCIATION: b3902 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.1.2.19
fast: false
reversible: true
name: Rhamnulose-1-phosphate aldolase

595060
type: LocalParameter
units: 456180
value: 0.0

595059
type: LocalParameter
units: 456180
value: 0.0

595058
type: LocalParameter
units: 456180
value: 1000.0

595057
type: LocalParameter
units: 456180
value: -1000.0

607540
type: SpeciesReference
stoichiometry: 1.0
species: 575303

575303
type: Species
notes: FORMULA: C3H6O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lactaldehyde

607528
type: SpeciesReference
stoichiometry: 1.0
species: 574603

574603
type: Species
notes: FORMULA: C3H5O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dihydroxyacetone phosphate

607516
type: SpeciesReference
stoichiometry: 1.0
species: 575971

575971
type: Species
notes: FORMULA: C6H11O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Rhamnulose 1-phosphate

580511
type: Reaction
product: 552069
reversible: false
reactant: 552033
kinetic law: 552081
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
product: 552057
reactant: 552045
fast: false
name: Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:1)

552069
type: SpeciesReference
stoichiometry: 1.0
species: 574871

574871
type: Species
notes: FORMULA: C5H14NO6P CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: sn-Glycero-3-phosphoethanolamine

552033
type: SpeciesReference
stoichiometry: 1.0
species: 573836

573836
type: Species
notes: FORMULA: C19H38NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)

591285
type: LocalParameter
units: 456180
value: 0.0

591284
type: LocalParameter
units: 456180
value: 0.0

591282
type: LocalParameter
units: 456180
value: 1000.0

591281
type: LocalParameter
units: 456180
value: 0.0

552057
type: SpeciesReference
stoichiometry: 1.0
species: 574319

574319
type: Species
notes: FORMULA: C48H86O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: acyl phosphatidylglycerol (n-C14:1)

552045
type: SpeciesReference
stoichiometry: 1.0
species: 575720

580067
type: Reaction
kinetic law: 530963
name: glucosyltransferase I (LPS core synthesis)
reactant: 530914
product: 530951
fast: false
notes: GENE_ASSOCIATION: b3631 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reactant: 530902
product: 530939
product: 530927
reversible: false

589457
type: LocalParameter
units: 456180
value: 0.0

589455
type: LocalParameter
units: 456180
value: 0.0

589454
type: LocalParameter
units: 456180
value: 1000.0

589452
type: LocalParameter
units: 456180
value: 0.0

530914
type: SpeciesReference
stoichiometry: 1.0
species: 576382

576382
type: Species
notes: FORMULA: C15H22N2O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: UDPglucose

530951
type: SpeciesReference
stoichiometry: 1.0
species: 576370

576370
type: Species
notes: FORMULA: C9H11N2O12P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: UDP

530902
type: SpeciesReference
stoichiometry: 1.0
species: 575213

575213
type: Species
notes: FORMULA: C145H251N2O74P4 CHARGE: -11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: inner core oligosaccharide lipid A (E coli)

530939
type: SpeciesReference
stoichiometry: 1.0
species: 575090

530927
type: SpeciesReference
stoichiometry: 1.0
species: 574967

574967
type: Species
notes: FORMULA: C151H261N2O79P4 CHARGE: -11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: glucosyl-inner core oligosaccharide lipid A

579145
type: Reaction
kinetic law: 486415
product: 486402
reactant: 486390
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: GlcNAc-anhMurNAc transport via diffusion (extracellular to periplasm)

585646
type: LocalParameter
units: 456180
value: 0.0

585644
type: LocalParameter
units: 456180
value: 0.0

585643
type: LocalParameter
units: 456180
value: 1000.0

585641
type: LocalParameter
units: 456180
value: -1000.0

486402
type: SpeciesReference
stoichiometry: 1.0
species: 577674

577674
type: Species
notes: FORMULA: C19H29N2O12 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid

486390
type: SpeciesReference
stoichiometry: 1.0
species: 576637

576637
type: Species
notes: FORMULA: C19H29N2O12 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid

575758
type: Species
notes: FORMULA: C29H38N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phenylacetyl-CoA

578897
type: Reaction
reactant: 475030
reactant: 475018
notes: GENE_ASSOCIATION: b2901 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.2.1.86
kinetic law: 475066
reversible: false
product: 475042
fast: false
product: 475054
name: Arbutin 6-phosphate glucohydrolase

475030
type: SpeciesReference
stoichiometry: 1.0
species: 575099

475018
type: SpeciesReference
stoichiometry: 1.0
species: 574341

574341
type: Species
notes: FORMULA: C12H15O10P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Arbutin 6-phosphate

584384
type: LocalParameter
units: 456180
value: 0.0

584382
type: LocalParameter
units: 456180
value: 0.0

584381
type: LocalParameter
units: 456180
value: 1000.0

584379
type: LocalParameter
units: 456180
value: 0.0

475042
type: SpeciesReference
stoichiometry: 1.0
species: 574883

574883
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucose 6-phosphate

475054
type: SpeciesReference
stoichiometry: 1.0
species: 575189

575189
type: Species
notes: FORMULA: C6H6O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hydroquinone

581571
type: Reaction
kinetic law: 614305
product: 614293
reactant: 614281
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-tartrate transport via diffusion (extracellular to periplasm)

595620
type: LocalParameter
units: 456180
value: 0.0

595618
type: LocalParameter
units: 456180
value: 0.0

595617
type: LocalParameter
units: 456180
value: 1000.0

595615
type: LocalParameter
units: 456180
value: -1000.0

614293
type: SpeciesReference
stoichiometry: 1.0
species: 578129

578129
type: Species
notes: FORMULA: C4H4O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-tartrate

614281
type: SpeciesReference
stoichiometry: 1.0
species: 577374

577374
type: Species
notes: FORMULA: C4H4O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-tartrate

579231
type: Reaction
product: 490889
notes: GENE_ASSOCIATION: b0131 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.1.1.11
reversible: false
kinetic law: 490901
name: aspartate 1-decarboxylase
reactant: 490853
reactant: 490865
fast: false
product: 490877

490889
type: SpeciesReference
stoichiometry: 1.0
species: 574476

586029
type: LocalParameter
units: 456180
value: 0.0

586027
type: LocalParameter
units: 456180
value: 0.0

586026
type: LocalParameter
units: 456180
value: 1000.0

586024
type: LocalParameter
units: 456180
value: 0.0

490853
type: SpeciesReference
stoichiometry: 1.0
species: 574363

574363
type: Species
notes: FORMULA: C4H6NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Aspartate

490865
type: SpeciesReference
stoichiometry: 1.0
species: 575090

490877
type: SpeciesReference
stoichiometry: 1.0
species: 574265

574265
type: Species
notes: FORMULA: C3H7NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: beta-Alanine

573973
type: Species
notes: FORMULA: C15H27N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (3R)-3-Hydroxyacyl-[acyl-carrier protein]

577938
type: Species
notes: FORMULA: C36H62O31 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Maltohexaose

578096
type: Species
notes: FORMULA: C8H13N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Pyridoxamine

577002
type: Species
notes: FORMULA: C3H6O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glyceraldehyde

578321
type: Reaction
kinetic law: 460502
reactant: 460490
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: core oligosaccharide lipid A diphosphate exchange

582294
type: LocalParameter
units: 456180
value: 0.0

582293
type: LocalParameter
units: 456180
value: 0.0

582291
type: LocalParameter
units: 456180
value: 1000.0

582290
type: LocalParameter
units: 456180
value: 0.0

460490
type: SpeciesReference
stoichiometry: 1.0
species: 576718

576718
type: Species
notes: FORMULA: C176H303N2O103P5 CHARGE: -12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: core oligosaccharide lipid A diphosphate

577107
type: Species
notes: FORMULA: C84H148N2O37P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: KDO(2)-lipid IV(A)

581828
type: Reaction
product: 625047
reversible: false
kinetic law: 625071
reactant: 625011
notes: GENE_ASSOCIATION: (b0063 or b3580) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.7.1.53
fast: false
product: 625059
reactant: 625023
name: L-xylulokinase
product: 625035

625047
type: SpeciesReference
stoichiometry: 1.0
species: 575090

596571
type: LocalParameter
units: 456180
value: 0.0

596570
type: LocalParameter
units: 456180
value: 0.0

596568
type: LocalParameter
units: 456180
value: 1000.0

596567
type: LocalParameter
units: 456180
value: 0.0

625011
type: SpeciesReference
stoichiometry: 1.0
species: 574373

625059
type: SpeciesReference
stoichiometry: 1.0
species: 576466

576466
type: Species
notes: FORMULA: C5H9O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Xylulose 5-phosphate

625023
type: SpeciesReference
stoichiometry: 1.0
species: 576475

576475
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Xylulose

625035
type: SpeciesReference
stoichiometry: 1.0
species: 574239

577062
type: Species
notes: FORMULA: C16H31O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Hexadecanoate (n-C16:0)

580224
type: Reaction
kinetic law: 538670
product: 538657
reactant: 538645
notes: GENE_ASSOCIATION: b3092 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.3.1.12
fast: false
reversible: true
name: glucuronate isomerase (D-galacturonate)

590108
type: LocalParameter
units: 456180
value: 0.0

590106
type: LocalParameter
units: 456180
value: 0.0

590105
type: LocalParameter
units: 456180
value: 1000.0

590104
type: LocalParameter
units: 456180
value: -1000.0

538657
type: SpeciesReference
stoichiometry: 1.0
species: 576130

576130
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Tagaturonate

538645
type: SpeciesReference
stoichiometry: 1.0
species: 574907

574907
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Galacturonate

579956
type: Reaction
product: 525000
reversible: false
notes: GENE_ASSOCIATION: b3528 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reactant: 524964
name: Fumarate transport via proton symport (2 H) (periplasm)
product: 524988
reactant: 524976
kinetic law: 525012

525000
type: SpeciesReference
stoichiometry: 2.0
species: 575090

524964
type: SpeciesReference
stoichiometry: 1.0
species: 577824

577824
type: Species
notes: FORMULA: C4H2O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Fumarate

524988
type: SpeciesReference
stoichiometry: 1.0
species: 574859

574859
type: Species
notes: FORMULA: C4H2O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Fumarate

524976
type: SpeciesReference
stoichiometry: 2.0
species: 577887

588907
type: LocalParameter
units: 456180
value: 0.0

588905
type: LocalParameter
units: 456180
value: 0.0

588904
type: LocalParameter
units: 456180
value: 1000.0

588902
type: LocalParameter
units: 456180
value: 0.0

581484
type: Reaction
reversible: true
reactant: 610653
reactant: 610641
notes: GENE_ASSOCIATION: b3607 SUBSYSTEM: Cysteine Metabolism EC Number: 2.3.1.30
kinetic law: 610689
fast: false
product: 610677
name: serine O-acetyltransferase
product: 610665

610653
type: SpeciesReference
stoichiometry: 1.0
species: 576016

610641
type: SpeciesReference
stoichiometry: 1.0
species: 574187

595296
type: LocalParameter
units: 456180
value: 0.0

595294
type: LocalParameter
units: 456180
value: 0.0

595270
type: LocalParameter
units: 456180
value: 1000.0

595269
type: LocalParameter
units: 456180
value: -1000.0

610677
type: SpeciesReference
stoichiometry: 1.0
species: 574478

610665
type: SpeciesReference
stoichiometry: 1.0
species: 574223

574223
type: Species
notes: FORMULA: C5H9NO4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: O-Acetyl-L-serine

580310
type: Reaction
product: 542330
kinetic law: 542354
name: Hydroxypyruvate reductase (NADH)
fast: false
reactant: 542294
reactant: 542306
product: 542342
reactant: 542318
reversible: false
notes: GENE_ASSOCIATION: (b1033 or b3553) SUBSYSTEM: Alternate Carbon Metabolism EC Number:

542330
type: SpeciesReference
stoichiometry: 1.0
species: 575024

575024
type: Species
notes: FORMULA: C3H5O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-Glycerate

590476
type: LocalParameter
units: 456180
value: 0.0

590474
type: LocalParameter
units: 456180
value: 0.0

590473
type: LocalParameter
units: 456180
value: 1000.0

590471
type: LocalParameter
units: 456180
value: 0.0

542294
type: SpeciesReference
stoichiometry: 1.0
species: 575090

542306
type: SpeciesReference
stoichiometry: 1.0
species: 575186

542342
type: SpeciesReference
stoichiometry: 1.0
species: 575519

542318
type: SpeciesReference
stoichiometry: 1.0
species: 575522

578723
type: Reaction
kinetic law: 467460
product: 467447
reactant: 467435
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)

583686
type: LocalParameter
units: 456180
value: 0.0

583684
type: LocalParameter
units: 456180
value: 0.0

583683
type: LocalParameter
units: 456180
value: 1000.0

583681
type: LocalParameter
units: 456180
value: -1000.0

467447
type: SpeciesReference
stoichiometry: 1.0
species: 577578

577578
type: Species
notes: FORMULA: C7H14N2O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: meso-2,6-Diaminoheptanedioate

467435
type: SpeciesReference
stoichiometry: 1.0
species: 576508

576508
type: Species
notes: FORMULA: C7H14N2O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: meso-2,6-Diaminoheptanedioate

578927
type: Reaction
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.1.3.10
product: 476468
kinetic law: 476480
reactant: 476431
reactant: 476444
reversible: false
product: 476456
name: N-acetyl-D-galactosamine 1-phosphatase (periplasm)

476468
type: SpeciesReference
stoichiometry: 1.0
species: 578076

584510
type: LocalParameter
units: 456180
value: 0.0

584509
type: LocalParameter
units: 456180
value: 0.0

584507
type: LocalParameter
units: 456180
value: 1000.0

584506
type: LocalParameter
units: 456180
value: 0.0

476431
type: SpeciesReference
stoichiometry: 1.0
species: 577643

577643
type: Species
notes: FORMULA: C8H14NO9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N-Acetyl-D-galactosamine 1-phosphate

476444
type: SpeciesReference
stoichiometry: 1.0
species: 577890

476456
type: SpeciesReference
stoichiometry: 1.0
species: 577641

577641
type: Species
notes: FORMULA: C8H15NO6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N-Acetyl-D-galactosamine

575363
type: Species
notes: FORMULA: C25H36N7O19P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: malonyl-CoA methyl ester

580980
type: Reaction
reactant: 572825
name: 3-Oxo-pimeloyl-[ACP] methyl ester reductase
reactant: 572801
reversible: false
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.1.1.100
product: 572849
reactant: 572813
kinetic law: 572861
fast: false
product: 572837

572825
type: SpeciesReference
stoichiometry: 1.0
species: 575618

575618
type: Species
notes: FORMULA: C19H31N2O11PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxo-pimeloyl-[acyl-carrier protein] methyl ester

572801
type: SpeciesReference
stoichiometry: 1.0
species: 575090

572849
type: SpeciesReference
stoichiometry: 1.0
species: 575525

572813
type: SpeciesReference
stoichiometry: 1.0
species: 575528

593414
type: LocalParameter
units: 456180
value: 0.0

593411
type: LocalParameter
units: 456180
value: 0.0

593410
type: LocalParameter
units: 456180
value: 1000.0

593407
type: LocalParameter
units: 456180
value: 0.0

572837
type: SpeciesReference
stoichiometry: 1.0
species: 575183

575183
type: Species
notes: FORMULA: C19H33N2O11PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Hydroxypimeloyl-[acyl-carrier protein] methyl ester

581843
type: Reaction
kinetic law: 625687
product: 625675
reactant: 625663
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: zinc (Zn+2) transport via diffusion (extracellular to periplasm)

596626
type: LocalParameter
units: 456180
value: 0.0

596625
type: LocalParameter
units: 456180
value: 0.0

596623
type: LocalParameter
units: 456180
value: 1000.0

596622
type: LocalParameter
units: 456180
value: -1000.0

625675
type: SpeciesReference
stoichiometry: 1.0
species: 578189

578189
type: Species
notes: FORMULA: Zn CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Zinc

625663
type: SpeciesReference
stoichiometry: 1.0
species: 577482

580137
type: Reaction
product: 534691
fast: false
reactant: 534655
name: Glycolate oxidase
notes: GENE_ASSOCIATION: (b2979 and b4467 and b4468) SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 534679
reactant: 534667
kinetic law: 534704
reversible: false

534691
type: SpeciesReference
stoichiometry: 1.0
species: 575483

534655
type: SpeciesReference
stoichiometry: 1.0
species: 575033

575033
type: Species
notes: FORMULA: C2H3O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycolate

534679
type: SpeciesReference
stoichiometry: 1.0
species: 575009

575009
type: Species
notes: FORMULA: C2H1O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glyoxylate

534667
type: SpeciesReference
stoichiometry: 1.0
species: 575486

589776
type: LocalParameter
units: 456180
value: 0.0

589774
type: LocalParameter
units: 456180
value: 0.0

589773
type: LocalParameter
units: 456180
value: 1000.0

589771
type: LocalParameter
units: 456180
value: 0.0

580893
type: Reaction
reversible: false
name: nucleoside-triphosphatase (ATP)
kinetic law: 568739
product: 568715
product: 568727
notes: GENE_ASSOCIATION: (b0650 or b4161) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.6.1.15
fast: false
reactant: 568690
product: 568703
reactant: 568677

592984
type: LocalParameter
units: 456180
value: 0.0

592983
type: LocalParameter
units: 456180
value: 0.0

592980
type: LocalParameter
units: 456180
value: 1000.0

592979
type: LocalParameter
units: 456180
value: 0.0

568715
type: SpeciesReference
stoichiometry: 1.0
species: 575090

568727
type: SpeciesReference
stoichiometry: 1.0
species: 575785

568690
type: SpeciesReference
stoichiometry: 1.0
species: 575099

568703
type: SpeciesReference
stoichiometry: 1.0
species: 574239

568677
type: SpeciesReference
stoichiometry: 1.0
species: 574373

578010
type: Species
notes: FORMULA: C312H523N6O200P4 CHARGE: -11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (O16 antigen)x4 core oligosaccharide lipid A

580223
type: Reaction
kinetic law: 538632
product: 538620
reactant: 538608
notes: GENE_ASSOCIATION: b3092 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.3.1.12
fast: false
reversible: true
name: glucuronate isomerase (D-glucuronate)

590103
type: LocalParameter
units: 456180
value: 0.0

590102
type: LocalParameter
units: 456180
value: 0.0

590101
type: LocalParameter
units: 456180
value: 1000.0

590100
type: LocalParameter
units: 456180
value: -1000.0

538620
type: SpeciesReference
stoichiometry: 1.0
species: 574853

574853
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Fructuronate

538608
type: SpeciesReference
stoichiometry: 1.0
species: 574979

574979
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucuronate

580764
type: Reaction
kinetic law: 563148
product: 563136
reactant: 563124
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: true
name: nitrious oxide transport (diffusion)

592353
type: LocalParameter
units: 456180
value: 0.0

592351
type: LocalParameter
units: 456180
value: 0.0

592350
type: LocalParameter
units: 456180
value: 1000.0

592347
type: LocalParameter
units: 456180
value: -1000.0

563136
type: SpeciesReference
stoichiometry: 1.0
species: 575504

575504
type: Species
notes: FORMULA: N2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nitrous oxide

563124
type: SpeciesReference
stoichiometry: 1.0
species: 577992

577992
type: Species
notes: FORMULA: N2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Nitrous oxide

573922
type: Species
notes: FORMULA: C47H72O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Octaprenyl-6-methoxy-1,4-benzoquinol

579046
type: Reaction
reactant: 481785
reversible: false
product: 481797
kinetic law: 481821
product: 481809
name: GlcNAc-anhMurNAc tetrapeptide transport in via proton symport (periplasm)
reactant: 481773
notes: GENE_ASSOCIATION: b0433 SUBSYSTEM: Murein Recycling EC Number:
fast: false

481785
type: SpeciesReference
stoichiometry: 1.0
species: 577887

481797
type: SpeciesReference
stoichiometry: 1.0
species: 574301

574301
type: Species
notes: FORMULA: C37H57N7O20 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide

585239
type: LocalParameter
units: 456180
value: 0.0

585237
type: LocalParameter
units: 456180
value: 0.0

585236
type: LocalParameter
units: 456180
value: 1000.0

585234
type: LocalParameter
units: 456180
value: 0.0

481809
type: SpeciesReference
stoichiometry: 1.0
species: 575090

481773
type: SpeciesReference
stoichiometry: 1.0
species: 577677

577677
type: Species
notes: FORMULA: C37H57N7O20 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide

580373
type: Reaction
kinetic law: 545102
product: 545090
reactant: 545078
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: IMP transport via diffusion (extracellular to periplasm)

590712
type: LocalParameter
units: 456180
value: 0.0

590711
type: LocalParameter
units: 456180
value: 0.0

590709
type: LocalParameter
units: 456180
value: 1000.0

590708
type: LocalParameter
units: 456180
value: -1000.0

545090
type: SpeciesReference
stoichiometry: 1.0
species: 577908

577908
type: Species
notes: FORMULA: C10H11N4O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: IMP

545078
type: SpeciesReference
stoichiometry: 1.0
species: 577089

577089
type: Species
notes: FORMULA: C10H11N4O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: IMP

578181
type: Species
notes: FORMULA: C5H4N4O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Xanthine

580556
type: Reaction
notes: GENE_ASSOCIATION: b3907 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 554283
product: 554308
reactant: 554295
fast: false
kinetic law: 554333
reversible: false
product: 554321
name: L-Lyxose transport via proton symport (periplasm)

554283
type: SpeciesReference
stoichiometry: 1.0
species: 577887

554308
type: SpeciesReference
stoichiometry: 1.0
species: 575090

554295
type: SpeciesReference
stoichiometry: 1.0
species: 577932

577932
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Lyxose

591472
type: LocalParameter
units: 456180
value: 0.0

591471
type: LocalParameter
units: 456180
value: 0.0

591469
type: LocalParameter
units: 456180
value: 1000.0

591468
type: LocalParameter
units: 456180
value: 0.0

554321
type: SpeciesReference
stoichiometry: 1.0
species: 575348

575348
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lyxose

574802
type: Species
notes: FORMULA: C30H27FeN3O15 CHARGE: 3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Fe-enterobactin

579839
type: Reaction
kinetic law: 518759
product: 518747
product: 518735
reactant: 518723
notes: GENE_ASSOCIATION: (b2738 or b2800) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.1.2.17
fast: false
reversible: true
name: L-fuculose 1-phosphate aldolase

588412
type: LocalParameter
units: 456180
value: 0.0

588410
type: LocalParameter
units: 456180
value: 0.0

588409
type: LocalParameter
units: 456180
value: 1000.0

588407
type: LocalParameter
units: 456180
value: -1000.0

518747
type: SpeciesReference
stoichiometry: 1.0
species: 575303

518735
type: SpeciesReference
stoichiometry: 1.0
species: 574603

518723
type: SpeciesReference
stoichiometry: 1.0
species: 574772

574772
type: Species
notes: FORMULA: C6H11O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Fuculose 1-phosphate

578222
type: Reaction
kinetic law: 458899
reactant: 458887
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: 3'-cmp exchange

581940
type: LocalParameter
units: 456180
value: 0.0

581939
type: LocalParameter
units: 456180
value: 0.0

581938
type: LocalParameter
units: 456180
value: 1000.0

581937
type: LocalParameter
units: 456180
value: 0.0

458887
type: SpeciesReference
stoichiometry: 1.0
species: 576520

576520
type: Species
notes: FORMULA: C9H12N3O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 3'-cmp

577820
type: Species
notes: FORMULA: C12H25N2O7 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: fructoselysine

579925
type: Reaction
fast: false
kinetic law: 523596
reversible: false
reactant: 523547
product: 523572
reactant: 523535
name: FMN reductase
reactant: 523559
product: 523584
notes: GENE_ASSOCIATION: (b0937 or b3844) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:

588769
type: LocalParameter
units: 456180
value: 0.0

588768
type: LocalParameter
units: 456180
value: 0.0

588766
type: LocalParameter
units: 456180
value: 1000.0

588765
type: LocalParameter
units: 456180
value: 0.0

523547
type: SpeciesReference
stoichiometry: 1.0
species: 575090

523572
type: SpeciesReference
stoichiometry: 1.0
species: 574826

574826
type: Species
notes: FORMULA: C17H21N4O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Reduced FMN

523535
type: SpeciesReference
stoichiometry: 1.0
species: 574823

574823
type: Species
notes: FORMULA: C17H19N4O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: FMN

523559
type: SpeciesReference
stoichiometry: 1.0
species: 575522

523584
type: SpeciesReference
stoichiometry: 1.0
species: 575519

580734
type: Reaction
kinetic law: 561740
product: 561728
reactant: 561716
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: molybdate transport via diffusion (extracellular to periplasm)

592216
type: LocalParameter
units: 456180
value: 0.0

592215
type: LocalParameter
units: 456180
value: 0.0

592213
type: LocalParameter
units: 456180
value: 1000.0

592212
type: LocalParameter
units: 456180
value: -1000.0

561728
type: SpeciesReference
stoichiometry: 1.0
species: 577967

577967
type: Species
notes: FORMULA: MoO4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Molybdate

561716
type: SpeciesReference
stoichiometry: 1.0
species: 577203

577203
type: Species
notes: FORMULA: MoO4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Molybdate

579045
type: Reaction
kinetic law: 481761
notes: GENE_ASSOCIATION: b1107 SUBSYSTEM: Murein Recycling EC Number:
product: 481737
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase
reactant: 481725
reactant: 481713
product: 481749
fast: false
reversible: false

585233
type: LocalParameter
units: 456180
value: 0.0

585232
type: LocalParameter
units: 456180
value: 0.0

585230
type: LocalParameter
units: 456180
value: 1000.0

585229
type: LocalParameter
units: 456180
value: 0.0

481737
type: SpeciesReference
stoichiometry: 1.0
species: 574195

574195
type: Species
notes: FORMULA: C8H15NO6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-glucosamine

481725
type: SpeciesReference
stoichiometry: 1.0
species: 575099

481713
type: SpeciesReference
stoichiometry: 1.0
species: 574301

481749
type: SpeciesReference
stoichiometry: 1.0
species: 574307

574307
type: Species
notes: FORMULA: C29H44N6O15 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,6-anhydrous-N-Acetylmuramyl-tetrapeptide

575989
type: Species
notes: FORMULA: C3H7NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Sarcosine

574502
type: Species
notes: FORMULA: C7H15NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Carnitine

580469
type: Reaction
reversible: false
name: Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm)
product: 549907
product: 549919
fast: false
product: 549895
reactant: 549883
kinetic law: 549931
notes: GENE_ASSOCIATION: b0494 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5
reactant: 549871

549907
type: SpeciesReference
stoichiometry: 1.0
species: 577875

549919
type: SpeciesReference
stoichiometry: 1.0
species: 577887

549895
type: SpeciesReference
stoichiometry: 1.0
species: 577757

577757
type: Species
notes: FORMULA: C12H23O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Dodecanoate (n-C12:0)

549883
type: SpeciesReference
stoichiometry: 1.0
species: 577890

591120
type: LocalParameter
units: 456180
value: 0.0

591119
type: LocalParameter
units: 456180
value: 0.0

591117
type: LocalParameter
units: 456180
value: 1000.0

591116
type: LocalParameter
units: 456180
value: 0.0

549871
type: SpeciesReference
stoichiometry: 1.0
species: 577559

577559
type: Species
notes: FORMULA: C15H29O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-dodecanoyl-sn-glycerol 3-phosphate

573969
type: Species
notes: FORMULA: C7H7O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Dehydroshikimate

579371
type: Reaction
kinetic law: 497971
product: 497959
product: 497947
reactant: 497935
notes: GENE_ASSOCIATION: (b1249 or b0789) SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
fast: false
reversible: true
name: cardiolipin synthase (periplasmic, n-C16:1)

586606
type: LocalParameter
units: 456180
value: 0.0

586605
type: LocalParameter
units: 456180
value: 0.0

586603
type: LocalParameter
units: 456180
value: 1000.0

586602
type: LocalParameter
units: 456180
value: -1000.0

497959
type: SpeciesReference
stoichiometry: 1.0
species: 577871

577871
type: Species
notes: FORMULA: C3H8O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Glycerol

497947
type: SpeciesReference
stoichiometry: 1.0
species: 577716

577716
type: Species
notes: FORMULA: C73H132O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetrahexadec-9-enoyl, n-C16:1)

497935
type: SpeciesReference
stoichiometry: 2.0
species: 578055

574094
type: Species
notes: FORMULA: C5H7O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Hydroxy-2-oxopentanoate

580109
type: Reaction
product: 533111
notes: GENE_ASSOCIATION: b3653 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 533087
kinetic law: 533123
reactant: 533074
name: Na+/glutamate symport (periplasm)
fast: false
reversible: false
product: 533099

533111
type: SpeciesReference
stoichiometry: 1.0
species: 575510

575510
type: Species
notes: FORMULA: Na CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Sodium

533087
type: SpeciesReference
stoichiometry: 1.0
species: 577994

577994
type: Species
notes: FORMULA: Na CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Sodium

589633
type: LocalParameter
units: 456180
value: 0.0

589631
type: LocalParameter
units: 456180
value: 0.0

589630
type: LocalParameter
units: 456180
value: 1000.0

589628
type: LocalParameter
units: 456180
value: 0.0

533074
type: SpeciesReference
stoichiometry: 1.0
species: 577865

533099
type: SpeciesReference
stoichiometry: 1.0
species: 574991

580038
type: Reaction
reactant: 529572
reactant: 529584
product: 529609
name: guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase
kinetic law: 529622
fast: false
product: 529597
reversible: false
notes: GENE_ASSOCIATION: b3650 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 3.1.7.2

529572
type: SpeciesReference
stoichiometry: 1.0
species: 574943

574943
type: Species
notes: FORMULA: C10H11N5O20P5 CHARGE: -7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Guanosine 3'-diphosphate 5'-triphosphate

529584
type: SpeciesReference
stoichiometry: 1.0
species: 575099

529609
type: SpeciesReference
stoichiometry: 1.0
species: 575824

589336
type: LocalParameter
units: 456180
value: 0.0

589334
type: LocalParameter
units: 456180
value: 0.0

589333
type: LocalParameter
units: 456180
value: 1000.0

589331
type: LocalParameter
units: 456180
value: 0.0

529597
type: SpeciesReference
stoichiometry: 1.0
species: 575081

575081
type: Species
notes: FORMULA: C10H12N5O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GTP

581489
type: Reaction
notes: GENE_ASSOCIATION: b0893 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.11
product: 610834
name: Seryl-tRNA synthetase
fast: false
kinetic law: 610870
product: 610846
reactant: 610822
reactant: 610798
product: 610858
reversible: false
reactant: 610810

610834
type: SpeciesReference
stoichiometry: 1.0
species: 574295

595312
type: LocalParameter
units: 456180
value: 0.0

595311
type: LocalParameter
units: 456180
value: 0.0

595309
type: LocalParameter
units: 456180
value: 1000.0

595308
type: LocalParameter
units: 456180
value: 0.0

610846
type: SpeciesReference
stoichiometry: 1.0
species: 575824

610822
type: SpeciesReference
stoichiometry: 1.0
species: 576277

576277
type: Species
notes: FORMULA: R CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tRNA(Ser)

610798
type: SpeciesReference
stoichiometry: 1.0
species: 574373

610858
type: SpeciesReference
stoichiometry: 1.0
species: 576022

576022
type: Species
notes: FORMULA: C3H6NO2R CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Seryl-tRNA(Ser)

610810
type: SpeciesReference
stoichiometry: 1.0
species: 576016

580781
type: Reaction
product: 563885
notes: GENE_ASSOCIATION: b2615 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.1.23
product: 563861
reactant: 563849
name: NAD kinase
fast: false
reactant: 563837
product: 563873
reversible: false
kinetic law: 563897

563885
type: SpeciesReference
stoichiometry: 1.0
species: 575525

563861
type: SpeciesReference
stoichiometry: 1.0
species: 574239

563849
type: SpeciesReference
stoichiometry: 1.0
species: 575519

563837
type: SpeciesReference
stoichiometry: 1.0
species: 574373

563873
type: SpeciesReference
stoichiometry: 1.0
species: 575090

592424
type: LocalParameter
units: 456180
value: 0.0

592423
type: LocalParameter
units: 456180
value: 0.0

592420
type: LocalParameter
units: 456180
value: 1000.0

592419
type: LocalParameter
units: 456180
value: 0.0

579299
type: Reaction
product: 494317
notes: GENE_ASSOCIATION: (b1711 and b1709 and b0158) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 494329
kinetic law: 494365
reactant: 494281
reactant: 494293
fast: false
reversible: false
name: Cobinamide transport via ABC system (uptake, periplasm)
product: 494353
product: 494341
reactant: 494305

494317
type: SpeciesReference
stoichiometry: 1.0
species: 574239

494329
type: SpeciesReference
stoichiometry: 1.0
species: 574419

574419
type: Species
notes: FORMULA: C48H72CoN11O8 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Cobinamide

586309
type: LocalParameter
units: 456180
value: 0.0

586308
type: LocalParameter
units: 456180
value: 0.0

586306
type: LocalParameter
units: 456180
value: 1000.0

586305
type: LocalParameter
units: 456180
value: 0.0

494281
type: SpeciesReference
stoichiometry: 1.0
species: 574373

494293
type: SpeciesReference
stoichiometry: 1.0
species: 575099

494353
type: SpeciesReference
stoichiometry: 1.0
species: 575785

494341
type: SpeciesReference
stoichiometry: 1.0
species: 575090

494305
type: SpeciesReference
stoichiometry: 1.0
species: 577698

577698
type: Species
notes: FORMULA: C48H72CoN11O8 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cobinamide

580694
type: Reaction
name: Maltodextrin glucosidase (maltopentaose)
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 560215
reactant: 560191
reversible: false
product: 560203
fast: false
reactant: 560179
kinetic law: 560227

560215
type: SpeciesReference
stoichiometry: 1.0
species: 575384

560191
type: SpeciesReference
stoichiometry: 1.0
species: 575378

560203
type: SpeciesReference
stoichiometry: 1.0
species: 574970

560179
type: SpeciesReference
stoichiometry: 1.0
species: 575099

592048
type: LocalParameter
units: 456180
value: 0.0

592045
type: LocalParameter
units: 456180
value: 0.0

592044
type: LocalParameter
units: 456180
value: 1000.0

592041
type: LocalParameter
units: 456180
value: 0.0

574895
type: Species
notes: FORMULA: C6H8O8 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Galactarate

578148
type: Species
notes: FORMULA: O3S2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Thiosulfate

578727
type: Reaction
kinetic law: 467569
product: 467557
reactant: 467545
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm)

583702
type: LocalParameter
units: 456180
value: 0.0

583701
type: LocalParameter
units: 456180
value: 0.0

583699
type: LocalParameter
units: 456180
value: 1000.0

583698
type: LocalParameter
units: 456180
value: 0.0

467557
type: SpeciesReference
stoichiometry: 1.0
species: 573945

573945
type: Species
notes: FORMULA: C17H32O7P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-tetradec-7-enoyl-sn-glycerol 3-phosphate

467545
type: SpeciesReference
stoichiometry: 1.0
species: 577610

577610
type: Species
notes: FORMULA: C17H32O7P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-tetradec-7-enoyl-sn-glycerol 3-phosphate

578501
type: Reaction
kinetic law: 463402
reactant: 463390
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-lactate exchange

582887
type: LocalParameter
units: 456180
value: 0.0

582885
type: LocalParameter
units: 456180
value: 0.0

582884
type: LocalParameter
units: 456180
value: 1000.0

582882
type: LocalParameter
units: 456180
value: 0.0

463390
type: SpeciesReference
stoichiometry: 1.0
species: 577110

577110
type: Species
notes: FORMULA: C3H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Lactate

578177
type: Species
notes: FORMULA: CH4N2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Urea

574542
type: Species
notes: FORMULA: C10H13N5O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5'-Deoxyadenosine

576484
type: Species
notes: FORMULA: C3H8O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: (S)-Propane-1,2-diol

574116
type: Species
notes: FORMULA: C4H6N2O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5,6-dihydrouracil

578414
type: Reaction
kinetic law: 462001
reactant: 461989
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Glycerophosphoserine exchange

582616
type: LocalParameter
units: 456180
value: 0.0

582615
type: LocalParameter
units: 456180
value: 0.0

582614
type: LocalParameter
units: 456180
value: 1000.0

582613
type: LocalParameter
units: 456180
value: 0.0

461989
type: SpeciesReference
stoichiometry: 1.0
species: 576936

576936
type: Species
notes: FORMULA: C6H13NO8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycerophosphoserine

580944
type: Reaction
product: 571258
fast: false
product: 571246
name: 2-Oxobutanoate formate lyase
reversible: false
reactant: 571222
reactant: 571234
kinetic law: 571270
notes: GENE_ASSOCIATION: (((b0902 and b0903) and b2579) or (b0902 and b0903) or (b0902 and b3114)) SUBSYSTEM: Alternate Carbon Metabolism EC Number:

571258
type: SpeciesReference
stoichiometry: 1.0
species: 575815

571246
type: SpeciesReference
stoichiometry: 1.0
species: 574829

571222
type: SpeciesReference
stoichiometry: 1.0
species: 573914

573914
type: Species
notes: FORMULA: C4H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Oxobutanoate

571234
type: SpeciesReference
stoichiometry: 1.0
species: 574478

593246
type: LocalParameter
units: 456180
value: 0.0

593243
type: LocalParameter
units: 456180
value: 0.0

593242
type: LocalParameter
units: 456180
value: 1000.0

593239
type: LocalParameter
units: 456180
value: 0.0

579031
type: Reaction
reactant: 481065
name: adenylosuccinate synthase
product: 481125
notes: GENE_ASSOCIATION: b4177 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 6.3.4.4
product: 481101
fast: false
reactant: 481077
kinetic law: 481149
reactant: 481089
reversible: false
product: 481137
product: 481113

481065
type: SpeciesReference
stoichiometry: 1.0
species: 574363

481125
type: SpeciesReference
stoichiometry: 2.0
species: 575090

481101
type: SpeciesReference
stoichiometry: 1.0
species: 574563

574563
type: Species
notes: FORMULA: C14H14N5O11P CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N6-(1,2-Dicarboxyethyl)-AMP

481077
type: SpeciesReference
stoichiometry: 1.0
species: 575081

585178
type: LocalParameter
units: 456180
value: 0.0

585177
type: LocalParameter
units: 456180
value: 0.0

585175
type: LocalParameter
units: 456180
value: 1000.0

585174
type: LocalParameter
units: 456180
value: 0.0

481089
type: SpeciesReference
stoichiometry: 1.0
species: 575231

575231
type: Species
notes: FORMULA: C10H11N4O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: IMP

481137
type: SpeciesReference
stoichiometry: 1.0
species: 575785

481113
type: SpeciesReference
stoichiometry: 1.0
species: 574928

574928
type: Species
notes: FORMULA: C10H12N5O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP

580857
type: Reaction
reactant: 567218
kinetic law: 567267
notes: GENE_ASSOCIATION: (b2291 or b2744 or b4374) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.3.5
name: 5'-nucleotidase (dUMP)
product: 567254
reversible: false
reactant: 567230
fast: false
product: 567242

567218
type: SpeciesReference
stoichiometry: 1.0
species: 574718

574718
type: Species
notes: FORMULA: C9H11N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dUMP

592816
type: LocalParameter
units: 456180
value: 0.0

592815
type: LocalParameter
units: 456180
value: 0.0

592812
type: LocalParameter
units: 456180
value: 1000.0

592811
type: LocalParameter
units: 456180
value: 0.0

567254
type: SpeciesReference
stoichiometry: 1.0
species: 575785

567230
type: SpeciesReference
stoichiometry: 1.0
species: 575099

567242
type: SpeciesReference
stoichiometry: 1.0
species: 574721

574721
type: Species
notes: FORMULA: C9H12N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Deoxyuridine

580110
type: Reaction
kinetic law: 533159
product: 533147
reactant: 533135
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-glutamate transport via diffusion (extracellular to periplasm)

589638
type: LocalParameter
units: 456180
value: 0.0

589637
type: LocalParameter
units: 456180
value: 0.0

589635
type: LocalParameter
units: 456180
value: 1000.0

589634
type: LocalParameter
units: 456180
value: -1000.0

533147
type: SpeciesReference
stoichiometry: 1.0
species: 577865

533135
type: SpeciesReference
stoichiometry: 1.0
species: 576996

576996
type: Species
notes: FORMULA: C5H8NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Glutamate

581612
type: Reaction
kinetic law: 615957
product: 615944
product: 615932
reactant: 615920
notes: GENE_ASSOCIATION: (b2551 or b0870) SUBSYSTEM: Threonine and Lysine Metabolism EC Number: 4.1.2.5
fast: false
reversible: false
name: L-allo-Threonine Aldolase

595768
type: LocalParameter
units: 456180
value: 0.0

595767
type: LocalParameter
units: 456180
value: 0.0

595765
type: LocalParameter
units: 456180
value: 1000.0

595764
type: LocalParameter
units: 456180
value: 0.0

615944
type: SpeciesReference
stoichiometry: 1.0
species: 575012

615932
type: SpeciesReference
stoichiometry: 1.0
species: 574183

615920
type: SpeciesReference
stoichiometry: 1.0
species: 574369

574369
type: Species
notes: FORMULA: C4H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Allo-threonine

578381
type: Reaction
kinetic law: 461467
reactant: 461455
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Fe3+ exchange

582505
type: LocalParameter
units: 456180
value: 0.0

582504
type: LocalParameter
units: 456180
value: 0.0

582502
type: LocalParameter
units: 456180
value: 1000.0

582501
type: LocalParameter
units: 456180
value: -1000.0

461455
type: SpeciesReference
stoichiometry: 1.0
species: 576870

576870
type: Species
notes: FORMULA: Fe CHARGE: 3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Fe3+

579209
type: Reaction
kinetic law: 489749
product: 489713
product: 489737
fast: false
reversible: false
reactant: 489677
product: 489701
reactant: 489665
product: 489725
notes: GENE_ASSOCIATION: ((b2310 and b2307 and b2306 and b2308) or (b0863 and b0860 and b0861 and b0864 and b0862)) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 489689
name: L-arginine transport via ABC system (periplasm)

585910
type: LocalParameter
units: 456180
value: 0.0

585908
type: LocalParameter
units: 456180
value: 0.0

585907
type: LocalParameter
units: 456180
value: 1000.0

585905
type: LocalParameter
units: 456180
value: 0.0

489713
type: SpeciesReference
stoichiometry: 1.0
species: 574347

574347
type: Species
notes: FORMULA: C6H15N4O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Arginine

489737
type: SpeciesReference
stoichiometry: 1.0
species: 575785

489677
type: SpeciesReference
stoichiometry: 1.0
species: 575099

489701
type: SpeciesReference
stoichiometry: 1.0
species: 574239

489665
type: SpeciesReference
stoichiometry: 1.0
species: 574373

489725
type: SpeciesReference
stoichiometry: 1.0
species: 575090

489689
type: SpeciesReference
stoichiometry: 1.0
species: 577685

577685
type: Species
notes: FORMULA: C6H15N4O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Arginine

574464
type: Species
notes: FORMULA: C9H7O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-Cinnamate

580023
type: Reaction
fast: false
reactant: 528766
name: D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm)
kinetic law: 528802
reactant: 528754
product: 528790
reversible: false
product: 528778
notes: GENE_ASSOCIATION: b3666 SUBSYSTEM: Transport, Inner Membrane EC Number:

528766
type: SpeciesReference
stoichiometry: 1.0
species: 577851

577851
type: Species
notes: FORMULA: C6H13NO8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Glucosamine 6-phosphate

589264
type: LocalParameter
units: 456180
value: 0.0

589263
type: LocalParameter
units: 456180
value: 0.0

589261
type: LocalParameter
units: 456180
value: 1000.0

589260
type: LocalParameter
units: 456180
value: 0.0

528754
type: SpeciesReference
stoichiometry: 2.0
species: 575785

528790
type: SpeciesReference
stoichiometry: 2.0
species: 578076

528778
type: SpeciesReference
stoichiometry: 1.0
species: 574913

574913
type: Species
notes: FORMULA: C6H13NO8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucosamine 6-phosphate

580827
type: Reaction
reactant: 565855
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 3.2.2.14
product: 565891
fast: false
reactant: 565843
reversible: false
product: 565867
kinetic law: 565903
product: 565879
name: NMN nucleosidase

565855
type: SpeciesReference
stoichiometry: 1.0
species: 575543

565891
type: SpeciesReference
stoichiometry: 1.0
species: 575941

565843
type: SpeciesReference
stoichiometry: 1.0
species: 575099

565867
type: SpeciesReference
stoichiometry: 1.0
species: 575090

592663
type: LocalParameter
units: 456180
value: 0.0

592662
type: LocalParameter
units: 456180
value: 0.0

592659
type: LocalParameter
units: 456180
value: 1000.0

592658
type: LocalParameter
units: 456180
value: 0.0

565879
type: SpeciesReference
stoichiometry: 1.0
species: 575531

575531
type: Species
notes: FORMULA: C6H6N2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nicotinamide

574175
type: Species
notes: FORMULA: C3H8NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Aminoacetone

573900
type: Species
notes: FORMULA: C19H38O7P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-hexadecanoyl-sn-glycerol 3-phosphate

578998
type: Reaction
reactant: 479531
reactant: 479555
notes: GENE_ASSOCIATION: b1623 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.5.4.4
kinetic law: 479591
product: 479567
product: 479580
reversible: false
fast: false
name: Adenosine deaminase
reactant: 479543

479531
type: SpeciesReference
stoichiometry: 1.0
species: 574231

574231
type: Species
notes: FORMULA: C10H13N5O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Adenosine

479555
type: SpeciesReference
stoichiometry: 1.0
species: 575099

584802
type: LocalParameter
units: 456180
value: 0.0

584800
type: LocalParameter
units: 456180
value: 0.0

584799
type: LocalParameter
units: 456180
value: 1000.0

584797
type: LocalParameter
units: 456180
value: 0.0

479567
type: SpeciesReference
stoichiometry: 1.0
species: 575240

575240
type: Species
notes: FORMULA: C10H12N4O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Inosine

479580
type: SpeciesReference
stoichiometry: 1.0
species: 575534

479543
type: SpeciesReference
stoichiometry: 1.0
species: 575090

575899
type: Species
notes: FORMULA: C3H6NO6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: O-Phospho-L-serine

577659
type: Species
notes: FORMULA: C5H16N4 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Agmatine

578037
type: Species
notes: FORMULA: C29H58N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (didodecanoyl, n-C12:0)

576748
type: Species
notes: FORMULA: C3H7NO2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Cysteine

580995
type: Reaction
product: 573479
reversible: false
reactant: 573455
fast: false
name: oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+)
reactant: 573430
product: 573467
notes: GENE_ASSOCIATION: b1387 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
kinetic law: 573503
product: 573491
reactant: 573442

573479
type: SpeciesReference
stoichiometry: 2.0
species: 575090

573455
type: SpeciesReference
stoichiometry: 1.0
species: 575525

573430
type: SpeciesReference
stoichiometry: 1.0
species: 573932

573932
type: Species
notes: FORMULA: C29H38N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-oxepin-2(3H)-ylideneacetyl-CoA

573467
type: SpeciesReference
stoichiometry: 1.0
species: 574066

574066
type: Species
notes: FORMULA: C29H39N7O20P3S CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-oxo-5,6-dehydrosuberyl-CoA

593484
type: LocalParameter
units: 456180
value: 0.0

593481
type: LocalParameter
units: 456180
value: 0.0

593480
type: LocalParameter
units: 456180
value: 1000.0

593477
type: LocalParameter
units: 456180
value: 0.0

573491
type: SpeciesReference
stoichiometry: 1.0
species: 575528

573442
type: SpeciesReference
stoichiometry: 2.0
species: 575099

576163
type: Species
notes: FORMULA: C7H7NO4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2,3,4,5-Tetrahydrodipicolinate

580658
type: Reaction
kinetic law: 558769
product: 558757
reactant: 558745
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-methionine R-oxide diffusion (extracellular)

591887
type: LocalParameter
units: 456180
value: 0.0

591886
type: LocalParameter
units: 456180
value: 0.0

591883
type: LocalParameter
units: 456180
value: 1000.0

591882
type: LocalParameter
units: 456180
value: -1000.0

558757
type: SpeciesReference
stoichiometry: 1.0
species: 577955

577955
type: Species
notes: FORMULA: C5H11NO3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-methionine-R-sulfoxide

558745
type: SpeciesReference
stoichiometry: 1.0
species: 577179

575809
type: Species
notes: FORMULA: C3H5O5P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Propanoyl phosphate

581408
type: Reaction
product: 607034
reactant: 606998
product: 607022
kinetic law: 607046
notes: GENE_ASSOCIATION: ((b0463 and b0462 and b3035) or (b0463 and b2470 and b3035)) SUBSYSTEM: Transport, Outer Membrane EC Number:
reactant: 607010
name: Rifampin transport via TolC system
reversible: false
fast: false

607034
type: SpeciesReference
stoichiometry: 1.0
species: 577326

577326
type: Species
notes: FORMULA: C43H58N4O12 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: rifampin

606998
type: SpeciesReference
stoichiometry: 1.0
species: 577887

607022
type: SpeciesReference
stoichiometry: 1.0
species: 575090

595018
type: LocalParameter
units: 456180
value: 0.0

595017
type: LocalParameter
units: 456180
value: 0.0

595016
type: LocalParameter
units: 456180
value: 1000.0

595015
type: LocalParameter
units: 456180
value: 0.0

607010
type: SpeciesReference
stoichiometry: 1.0
species: 578105

579417
type: Reaction
name: crotonobetainyl-CoA: carnitine CoA transferase
fast: false
notes: GENE_ASSOCIATION: b0038 SUBSYSTEM: Oxidative Phosphorylation EC Number:
reversible: true
reactant: 500097
kinetic law: 500145
product: 500121
reactant: 500109
product: 500133

500097
type: SpeciesReference
stoichiometry: 1.0
species: 574502

586793
type: LocalParameter
units: 456180
value: 0.0

586791
type: LocalParameter
units: 456180
value: 0.0

586790
type: LocalParameter
units: 456180
value: 1000.0

586788
type: LocalParameter
units: 456180
value: -1000.0

500121
type: SpeciesReference
stoichiometry: 1.0
species: 574509

574509
type: Species
notes: FORMULA: C28H46N8O18P3S CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Carnitinyl-CoA

500109
type: SpeciesReference
stoichiometry: 1.0
species: 574517

574517
type: Species
notes: FORMULA: C28H44N8O17P3S CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: crotonobetainyl-CoA

500133
type: SpeciesReference
stoichiometry: 1.0
species: 574515

574515
type: Species
notes: FORMULA: C7H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: crotonobetaine

579990
type: Reaction
product: 527002
fast: false
reactant: 526977
name: glycerol-3-phosphatase
reactant: 526965
kinetic law: 527014
notes: GENE_ASSOCIATION: b0822 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reversible: false
product: 526989

527002
type: SpeciesReference
stoichiometry: 1.0
species: 575785

526977
type: SpeciesReference
stoichiometry: 1.0
species: 575099

526965
type: SpeciesReference
stoichiometry: 1.0
species: 575030

589088
type: LocalParameter
units: 456180
value: 0.0

589087
type: LocalParameter
units: 456180
value: 0.0

589085
type: LocalParameter
units: 456180
value: 1000.0

589084
type: LocalParameter
units: 456180
value: 0.0

526989
type: SpeciesReference
stoichiometry: 1.0
species: 575021

575021
type: Species
notes: FORMULA: C3H8O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycerol

574811
type: Species
notes: FORMULA: C8H13N2O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide

579635
type: Reaction
reactant: 510327
product: 510351
product: 510363
fast: false
reversible: false
reactant: 510315
notes: GENE_ASSOCIATION: b0103 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.1.24
name: dephospho-CoA kinase
product: 510339
kinetic law: 510375

510327
type: SpeciesReference
stoichiometry: 1.0
species: 574673

574673
type: Species
notes: FORMULA: C21H33N7O13P2S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dephospho-CoA

510351
type: SpeciesReference
stoichiometry: 1.0
species: 574478

510363
type: SpeciesReference
stoichiometry: 1.0
species: 575090

510315
type: SpeciesReference
stoichiometry: 1.0
species: 574373

510339
type: SpeciesReference
stoichiometry: 1.0
species: 574239

587687
type: LocalParameter
units: 456180
value: 0.0

587686
type: LocalParameter
units: 456180
value: 0.0

587684
type: LocalParameter
units: 456180
value: 1000.0

587683
type: LocalParameter
units: 456180
value: 0.0

579567
type: Reaction
kinetic law: 507200
product: 507188
reactant: 507176
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: true
name: Dihydroxyacetone transport via facilitated diffusion (periplasm)

587413
type: LocalParameter
units: 456180
value: 0.0

587412
type: LocalParameter
units: 456180
value: 0.0

587410
type: LocalParameter
units: 456180
value: 1000.0

587409
type: LocalParameter
units: 456180
value: -1000.0

507188
type: SpeciesReference
stoichiometry: 1.0
species: 574600

574600
type: Species
notes: FORMULA: C3H6O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dihydroxyacetone

507176
type: SpeciesReference
stoichiometry: 1.0
species: 577761

578109
type: Species
notes: FORMULA: C6H14O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Sorbitol

577821
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Fructuronate

578793
type: Reaction
kinetic law: 470089
product: 470077
product: 470065
reactant: 470052
notes: GENE_ASSOCIATION: (b0180 or b0954) SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 4.2.1.61
fast: false
reversible: false
name: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)

583977
type: LocalParameter
units: 456180
value: 0.0

583975
type: LocalParameter
units: 456180
value: 0.0

583974
type: LocalParameter
units: 456180
value: 1000.0

583972
type: LocalParameter
units: 456180
value: 0.0

470077
type: SpeciesReference
stoichiometry: 1.0
species: 576151

576151
type: Species
notes: FORMULA: C23H41N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-Dodec-2-enoyl-[acyl-carrier protein]

470065
type: SpeciesReference
stoichiometry: 1.0
species: 575099

470052
type: SpeciesReference
stoichiometry: 1.0
species: 573993

573993
type: Species
notes: FORMULA: C23H43N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-3-Hydroxydodecanoyl-[acyl-carrier protein]

576025
type: Species
notes: FORMULA: C3H6NO2R CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Seryl-tRNA(Sec)

579800
type: Reaction
notes: GENE_ASSOCIATION: b0452 SUBSYSTEM: Cell Envelope Biosynthesis EC Number:
reactant: 516448
reactant: 516436
name: fatty-acid-CoA thioesterase (tetradecanoate)
fast: false
kinetic law: 516496
reversible: false
product: 516472
product: 516484
product: 516460

516448
type: SpeciesReference
stoichiometry: 1.0
species: 576148

576148
type: Species
notes: FORMULA: C35H58N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Tetradecanoyl-CoA (n-C14:0CoA)

516436
type: SpeciesReference
stoichiometry: 1.0
species: 575099

588252
type: LocalParameter
units: 456180
value: 0.0

588251
type: LocalParameter
units: 456180
value: 0.0

588249
type: LocalParameter
units: 456180
value: 1000.0

588248
type: LocalParameter
units: 456180
value: 0.0

516472
type: SpeciesReference
stoichiometry: 1.0
species: 575090

516484
type: SpeciesReference
stoichiometry: 1.0
species: 576301

576301
type: Species
notes: FORMULA: C14H27O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tetradecanoate (n-C14:0)

516460
type: SpeciesReference
stoichiometry: 1.0
species: 574478

577925
type: Species
notes: FORMULA: C110H196N2O39P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: KDO(2)-lipid (A)

574305
type: Species
notes: FORMULA: C26H39N5O14 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,6-anhydrous-N-Acetylmuramyl-tripeptide

581795
type: Reaction
kinetic law: 623779
product: 623767
reactant: 623755
notes: GENE_ASSOCIATION: b0411 SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: true
name: uridine transport via diffusion (extracellular to periplasm)

596450
type: LocalParameter
units: 456180
value: 0.0

596449
type: LocalParameter
units: 456180
value: 0.0

596447
type: LocalParameter
units: 456180
value: 1000.0

596446
type: LocalParameter
units: 456180
value: -1000.0

623767
type: SpeciesReference
stoichiometry: 1.0
species: 578178

578178
type: Species
notes: FORMULA: C9H12N2O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Uridine

623755
type: SpeciesReference
stoichiometry: 1.0
species: 577461

577461
type: Species
notes: FORMULA: C9H12N2O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Uridine

578219
type: Reaction
kinetic law: 458850
reactant: 458838
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: 3,4-Dihydroxyphenylacetaldehyde exchange

581932
type: LocalParameter
units: 456180
value: 0.0

581931
type: LocalParameter
units: 456180
value: 0.0

581930
type: LocalParameter
units: 456180
value: 1000.0

581929
type: LocalParameter
units: 456180
value: 0.0

458838
type: SpeciesReference
stoichiometry: 1.0
species: 576514

576514
type: Species
notes: FORMULA: C8H8O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 3,4-Dihydroxyphenylacetaldehyde

578792
type: Reaction
kinetic law: 470040
product: 470027
product: 470015
reactant: 470003
notes: GENE_ASSOCIATION: (b0954 or b0180) SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 4.2.1.60
fast: false
reversible: false
name: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)

583971
type: LocalParameter
units: 456180
value: 0.0

583970
type: LocalParameter
units: 456180
value: 0.0

583968
type: LocalParameter
units: 456180
value: 1000.0

583967
type: LocalParameter
units: 456180
value: 0.0

470027
type: SpeciesReference
stoichiometry: 1.0
species: 576157

576157
type: Species
notes: FORMULA: C21H37N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-Dec-2-enoyl-[acyl-carrier protein]

470015
type: SpeciesReference
stoichiometry: 1.0
species: 575099

470003
type: SpeciesReference
stoichiometry: 1.0
species: 573995

573995
type: Species
notes: FORMULA: C21H39N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-3-Hydroxydecanoyl-[acyl-carrier protein]

578369
type: Reaction
kinetic law: 461275
reactant: 461263
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: phosphoethanolamine KDO(2)-lipid (A) exchange

582461
type: LocalParameter
units: 456180
value: 0.0

582460
type: LocalParameter
units: 456180
value: 0.0

582458
type: LocalParameter
units: 456180
value: 1000.0

582457
type: LocalParameter
units: 456180
value: 0.0

461263
type: SpeciesReference
stoichiometry: 1.0
species: 576846

576846
type: Species
notes: FORMULA: C112H202N3O42P3 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: phosphoethanolamine KDO(2)-lipid (A)

579536
type: Reaction
fast: false
reversible: false
kinetic law: 506013
product: 505988
name: diacetylchitobiose-6-phosphate hydrolase
reactant: 505964
product: 506000
notes: GENE_ASSOCIATION: b1734 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reactant: 505976

587287
type: LocalParameter
units: 456180
value: 0.0

587286
type: LocalParameter
units: 456180
value: 0.0

587284
type: LocalParameter
units: 456180
value: 1000.0

587283
type: LocalParameter
units: 456180
value: 0.0

505988
type: SpeciesReference
stoichiometry: 1.0
species: 574195

505964
type: SpeciesReference
stoichiometry: 1.0
species: 574462

574462
type: Species
notes: FORMULA: C16H27N2O14P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: diacetylchitobiose-6-phosphate

506000
type: SpeciesReference
stoichiometry: 1.0
species: 574199

574199
type: Species
notes: FORMULA: C8H14NO9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-glucosamine 6-phosphate

505976
type: SpeciesReference
stoichiometry: 1.0
species: 575099

581736
type: Reaction
kinetic law: 621306
product: 621294
reactant: 621282
notes: GENE_ASSOCIATION: b0759 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.1.3.2
fast: false
reversible: true
name: UDPglucose 4-epimerase

596230
type: LocalParameter
units: 456180
value: 0.0

596229
type: LocalParameter
units: 456180
value: 0.0

596227
type: LocalParameter
units: 456180
value: 1000.0

596226
type: LocalParameter
units: 456180
value: -1000.0

621294
type: SpeciesReference
stoichiometry: 1.0
species: 576385

576385
type: Species
notes: FORMULA: C15H22N2O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: UDPgalactose

621282
type: SpeciesReference
stoichiometry: 1.0
species: 576382

581765
type: Reaction
reactant: 622569
product: 622605
kinetic law: 622617
reactant: 622581
product: 622593
notes: GENE_ASSOCIATION: (b0910 or b0171) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.14
name: UMP kinase
fast: false
reversible: true

622569
type: SpeciesReference
stoichiometry: 1.0
species: 574373

622605
type: SpeciesReference
stoichiometry: 1.0
species: 576370

596340
type: LocalParameter
units: 456180
value: 0.0

596339
type: LocalParameter
units: 456180
value: 0.0

596337
type: LocalParameter
units: 456180
value: 1000.0

596336
type: LocalParameter
units: 456180
value: -1000.0

622581
type: SpeciesReference
stoichiometry: 1.0
species: 576403

576403
type: Species
notes: FORMULA: C9H11N2O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: UMP

622593
type: SpeciesReference
stoichiometry: 1.0
species: 574239

579449
type: Reaction
notes: GENE_ASSOCIATION: b3469 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 501706
name: Copper (Cu+2) ABC transporter (periplasm)
product: 501755
fast: false
reactant: 501730
product: 501742
reactant: 501718
kinetic law: 501792
product: 501768
product: 501780
reversible: false

501706
type: SpeciesReference
stoichiometry: 1.0
species: 574373

501755
type: SpeciesReference
stoichiometry: 1.0
species: 575090

501730
type: SpeciesReference
stoichiometry: 1.0
species: 575099

501742
type: SpeciesReference
stoichiometry: 1.0
species: 574239

501718
type: SpeciesReference
stoichiometry: 1.0
species: 574523

574523
type: Species
notes: FORMULA: Cu CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Cu2+

586924
type: LocalParameter
units: 456180
value: 0.0

586923
type: LocalParameter
units: 456180
value: 0.0

586921
type: LocalParameter
units: 456180
value: 1000.0

586920
type: LocalParameter
units: 456180
value: 0.0

501768
type: SpeciesReference
stoichiometry: 1.0
species: 575785

501780
type: SpeciesReference
stoichiometry: 1.0
species: 577740

577740
type: Species
notes: FORMULA: Cu CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cu2+

577701
type: Species
notes: FORMULA: Cd CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cadmium

581649
type: Reaction
kinetic law: 617707
product: 617695
product: 617670
fast: false
reactant: 617658
reactant: 617646
reversible: false
product: 617682
notes: GENE_ASSOCIATION: b1106 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.1.89
name: thiamine kinase

595911
type: LocalParameter
units: 456180
value: 0.0

595910
type: LocalParameter
units: 456180
value: 0.0

595908
type: LocalParameter
units: 456180
value: 1000.0

595907
type: LocalParameter
units: 456180
value: 0.0

617695
type: SpeciesReference
stoichiometry: 1.0
species: 576175

576175
type: Species
notes: FORMULA: C12H16N4O4PS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Thiamin monophosphate

617670
type: SpeciesReference
stoichiometry: 1.0
species: 574239

617658
type: SpeciesReference
stoichiometry: 1.0
species: 576172

576172
type: Species
notes: FORMULA: C12H17N4OS CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Thiamin

617646
type: SpeciesReference
stoichiometry: 1.0
species: 574373

617682
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579775
type: Reaction
fast: false
reactant: 515286
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 515274
product: 515298
reversible: false
kinetic law: 515322
name: ethanolamine transport in via proton symport
product: 515310

515286
type: SpeciesReference
stoichiometry: 1.0
species: 577887

515274
type: SpeciesReference
stoichiometry: 1.0
species: 577793

577793
type: Species
notes: FORMULA: C2H8NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Ethanolamine

515298
type: SpeciesReference
stoichiometry: 1.0
species: 574748

574748
type: Species
notes: FORMULA: C2H8NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ethanolamine

588148
type: LocalParameter
units: 456180
value: 0.0

588146
type: LocalParameter
units: 456180
value: 0.0

588145
type: LocalParameter
units: 456180
value: 1000.0

588143
type: LocalParameter
units: 456180
value: 0.0

515310
type: SpeciesReference
stoichiometry: 1.0
species: 575090

581678
type: Reaction
kinetic law: 618831
product: 618819
reactant: 618807
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-tryptophan transport via diffusion (extracellular to periplasm)

596016
type: LocalParameter
units: 456180
value: 0.0

596014
type: LocalParameter
units: 456180
value: 0.0

596013
type: LocalParameter
units: 456180
value: 1000.0

596011
type: LocalParameter
units: 456180
value: -1000.0

618819
type: SpeciesReference
stoichiometry: 1.0
species: 578147

578147
type: Species
notes: FORMULA: C11H12N2O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Tryptophan

618807
type: SpeciesReference
stoichiometry: 1.0
species: 577410

577410
type: Species
notes: FORMULA: C11H12N2O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Tryptophan

580919
type: Reaction
notes: GENE_ASSOCIATION: b2954 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.6.1.19
reactant: 569913
name: Nucleoside triphosphate pyrophosphorylase (itp)
product: 569949
reactant: 569925
product: 569937
product: 569961
fast: false
reversible: false
kinetic law: 569973

569913
type: SpeciesReference
stoichiometry: 1.0
species: 575099

569949
type: SpeciesReference
stoichiometry: 1.0
species: 575231

569925
type: SpeciesReference
stoichiometry: 1.0
species: 575267

569937
type: SpeciesReference
stoichiometry: 1.0
species: 575090

569961
type: SpeciesReference
stoichiometry: 1.0
species: 575824

593104
type: LocalParameter
units: 456180
value: 0.0

593101
type: LocalParameter
units: 456180
value: 0.0

593100
type: LocalParameter
units: 456180
value: 1000.0

593097
type: LocalParameter
units: 456180
value: 0.0

577806
type: Species
notes: FORMULA: C9H18O6N3Fe CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Fe(III)hydroxamate

576040
type: Species
notes: FORMULA: C11H12NO8 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Succinyl-2-L-amino-6-oxoheptanedioate

578048
type: Species
notes: FORMULA: C8H12N CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phenethylamine

577598
type: Species
notes: FORMULA: C24H48O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)

577835
type: Species
notes: FORMULA: C6H13NO8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Glycerophosphoserine

579804
type: Reaction
product: 516692
reactant: 516666
kinetic law: 516716
fast: false
product: 516704
product: 516679
notes: GENE_ASSOCIATION: b0452 SUBSYSTEM: Cell Envelope Biosynthesis EC Number:
reactant: 516654
name: fatty-acid-CoA thioesterase (hexadecenoate)
reversible: false

516692
type: SpeciesReference
stoichiometry: 1.0
species: 575090

516666
type: SpeciesReference
stoichiometry: 1.0
species: 575126

575126
type: Species
notes: FORMULA: C37H60N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecenoyl-CoA (n-C16:1CoA)

588269
type: LocalParameter
units: 456180
value: 0.0

588267
type: LocalParameter
units: 456180
value: 0.0

588266
type: LocalParameter
units: 456180
value: 1000.0

588264
type: LocalParameter
units: 456180
value: 0.0

516704
type: SpeciesReference
stoichiometry: 1.0
species: 575120

575120
type: Species
notes: FORMULA: C16H29O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecenoate (n-C16:1)

516679
type: SpeciesReference
stoichiometry: 1.0
species: 574478

516654
type: SpeciesReference
stoichiometry: 1.0
species: 575099

580613
type: Reaction
kinetic law: 556813
product: 556801
product: 556789
reactant: 556777
notes: GENE_ASSOCIATION: (b0084 or b0635 or b3396 or b0149) SUBSYSTEM: Murein Biosynthesis EC Number:
fast: false
reversible: false
name: murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)

591704
type: LocalParameter
units: 456180
value: 0.0

591703
type: LocalParameter
units: 456180
value: 0.0

591701
type: LocalParameter
units: 456180
value: 1000.0

591700
type: LocalParameter
units: 456180
value: 0.0

556801
type: SpeciesReference
stoichiometry: 1.0
species: 577991

577991
type: Species
notes: FORMULA: C114H172N22O59 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)

556789
type: SpeciesReference
stoichiometry: 2.0
species: 577664

556777
type: SpeciesReference
stoichiometry: 1.0
species: 577986

577986
type: Species
notes: FORMULA: C120H186N24O63 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: three linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)

579954
type: Reaction
product: 524890
reactant: 524865
fast: false
kinetic law: 524902
reactant: 524853
notes: GENE_ASSOCIATION: b2801 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 524877
reversible: true
name: L-fucose transport via proton symport (periplasm)

524890
type: SpeciesReference
stoichiometry: 1.0
species: 575090

524865
type: SpeciesReference
stoichiometry: 1.0
species: 577887

588896
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units: 456180
value: 0.0

588894
type: LocalParameter
units: 456180
value: 0.0

588893
type: LocalParameter
units: 456180
value: 1000.0

588891
type: LocalParameter
units: 456180
value: -1000.0

524853
type: SpeciesReference
stoichiometry: 1.0
species: 577823

577823
type: Species
notes: FORMULA: C6H12O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Fucose

524877
type: SpeciesReference
stoichiometry: 1.0
species: 574856

574856
type: Species
notes: FORMULA: C6H12O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Fucose

579250
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: true
kinetic law: 491853
fast: false
reactant: 491817
reactant: 491805
name: L-aspartate transport in via proton symport (periplasm) reversible
product: 491829
product: 491841

586106
type: LocalParameter
units: 456180
value: 0.0

586104
type: LocalParameter
units: 456180
value: 0.0

586103
type: LocalParameter
units: 456180
value: 1000.0

586101
type: LocalParameter
units: 456180
value: -1000.0

491817
type: SpeciesReference
stoichiometry: 1.0
species: 577887

491805
type: SpeciesReference
stoichiometry: 1.0
species: 577691

577691
type: Species
notes: FORMULA: C4H6NO4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Aspartate

491829
type: SpeciesReference
stoichiometry: 1.0
species: 574363

491841
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579190
type: Reaction
fast: false
product: 488806
reversible: false
product: 488818
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: aerobactin secretion (to periplasm)
reactant: 488782
kinetic law: 488830
reactant: 488794

488806
type: SpeciesReference
stoichiometry: 1.0
species: 575090

488818
type: SpeciesReference
stoichiometry: 1.0
species: 577682

577682
type: Species
notes: FORMULA: C22H33N4O13 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: aerobactin minus Fe3

488782
type: SpeciesReference
stoichiometry: 1.0
species: 574343

585833
type: LocalParameter
units: 456180
value: 0.0

585831
type: LocalParameter
units: 456180
value: 0.0

585830
type: LocalParameter
units: 456180
value: 1000.0

585828
type: LocalParameter
units: 456180
value: 0.0

488794
type: SpeciesReference
stoichiometry: 1.0
species: 577887

575162
type: Species
notes: FORMULA: C9H8O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate

578973
type: Reaction
kinetic law: 478411
product: 478399
reactant: 478387
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Unassigned EC Number: 5.3.3.7
fast: false
reversible: true
name: aconitate isomerase (spontaneous)

584697
type: LocalParameter
units: 456180
value: 0.0

584696
type: LocalParameter
units: 456180
value: 0.0

584694
type: LocalParameter
units: 456180
value: 1000.0

584693
type: LocalParameter
units: 456180
value: -1000.0

478399
type: SpeciesReference
stoichiometry: 1.0
species: 574215

574215
type: Species
notes: FORMULA: C6H3O6 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-Aconitate

478387
type: SpeciesReference
stoichiometry: 1.0
species: 574217

574217
type: Species
notes: FORMULA: C6H3O6 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-Aconitate

580290
type: Reaction
reactant: 541413
notes: GENE_ASSOCIATION: (b2309 and b2307 and b2306 and b2308) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 541449
reactant: 541437
kinetic law: 541497
product: 541473
name: L-histidine transport via ABC system (periplasm)
product: 541461
fast: false
reversible: false
reactant: 541425
product: 541485

541413
type: SpeciesReference
stoichiometry: 1.0
species: 574373

541449
type: SpeciesReference
stoichiometry: 1.0
species: 574239

541437
type: SpeciesReference
stoichiometry: 1.0
species: 577899

577899
type: Species
notes: FORMULA: C6H9N3O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Histidine

590393
type: LocalParameter
units: 456180
value: 0.0

590392
type: LocalParameter
units: 456180
value: 0.0

590390
type: LocalParameter
units: 456180
value: 1000.0

590389
type: LocalParameter
units: 456180
value: 0.0

541473
type: SpeciesReference
stoichiometry: 1.0
species: 575150

575150
type: Species
notes: FORMULA: C6H9N3O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Histidine

541461
type: SpeciesReference
stoichiometry: 1.0
species: 575090

541425
type: SpeciesReference
stoichiometry: 1.0
species: 575099

541485
type: SpeciesReference
stoichiometry: 1.0
species: 575785

574733
type: Species
notes: FORMULA: C4H7O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Erythrose 4-phosphate

579983
type: Reaction
kinetic law: 526553
product: 526540
reactant: 526527
notes: GENE_ASSOCIATION: (b0929 or b1377 or b2215 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: glycero-3-phosphoethanolamine transport via diffusion (extracellular to periplasm)

589050
type: LocalParameter
units: 456180
value: 0.0

589048
type: LocalParameter
units: 456180
value: 0.0

589047
type: LocalParameter
units: 456180
value: 1000.0

589045
type: LocalParameter
units: 456180
value: -1000.0

526540
type: SpeciesReference
stoichiometry: 1.0
species: 577830

577830
type: Species
notes: FORMULA: C5H14NO6P CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: sn-Glycero-3-phosphoethanolamine

526527
type: SpeciesReference
stoichiometry: 1.0
species: 576927

576927
type: Species
notes: FORMULA: C5H14NO6P CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: sn-Glycero-3-phosphoethanolamine

578607
type: Reaction
kinetic law: 465129
reactant: 465117
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: alpha-D-Ribose 5-phosphate exchange

583271
type: LocalParameter
units: 456180
value: 0.0

583269
type: LocalParameter
units: 456180
value: 0.0

583268
type: LocalParameter
units: 456180
value: 1000.0

583266
type: LocalParameter
units: 456180
value: 0.0

465117
type: SpeciesReference
stoichiometry: 1.0
species: 577323

577323
type: Species
notes: FORMULA: C5H9O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: alpha-D-Ribose 5-phosphate

580056
type: Reaction
kinetic law: 530528
product: 530516
reactant: 530504
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-gluconate transport via diffusion (extracellular to periplasm)

589413
type: LocalParameter
units: 456180
value: 0.0

589411
type: LocalParameter
units: 456180
value: 0.0

589410
type: LocalParameter
units: 456180
value: 1000.0

589408
type: LocalParameter
units: 456180
value: -1000.0

530516
type: SpeciesReference
stoichiometry: 1.0
species: 577857

577857
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Gluconate

530504
type: SpeciesReference
stoichiometry: 1.0
species: 576981

576981
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Gluconate

578886
type: Reaction
fast: false
name: acyl-[acyl-carrier-protein] synthetase (n-C18:0)
notes: GENE_ASSOCIATION: (b2836 and b1094) SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 6.2.1.20
reactant: 474472
product: 474484
product: 474509
reactant: 474460
reactant: 474448
product: 474497
kinetic law: 474521
reversible: false

474472
type: SpeciesReference
stoichiometry: 1.0
species: 575576

575576
type: Species
notes: FORMULA: C18H35O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: octadecanoate (n-C18:0)

474484
type: SpeciesReference
stoichiometry: 1.0
species: 574295

474509
type: SpeciesReference
stoichiometry: 1.0
species: 575824

474460
type: SpeciesReference
stoichiometry: 1.0
species: 574373

474448
type: SpeciesReference
stoichiometry: 1.0
species: 574155

474497
type: SpeciesReference
stoichiometry: 1.0
species: 575579

575579
type: Species
notes: FORMULA: C29H55N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Octadecanoyl-ACP (n-C18:0ACP)

584340
type: LocalParameter
units: 456180
value: 0.0

584338
type: LocalParameter
units: 456180
value: 0.0

584337
type: LocalParameter
units: 456180
value: 1000.0

584335
type: LocalParameter
units: 456180
value: 0.0

579896
type: Reaction
product: 522003
reactant: 521991
kinetic law: 522027
notes: GENE_ASSOCIATION: b3035 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
name: enterochelin transport (secretion periplasm)
reactant: 521979
reversible: false
product: 522015
fast: false

522003
type: SpeciesReference
stoichiometry: 1.0
species: 575090

521991
type: SpeciesReference
stoichiometry: 1.0
species: 577887

588648
type: LocalParameter
units: 456180
value: 0.0

588647
type: LocalParameter
units: 456180
value: 0.0

588645
type: LocalParameter
units: 456180
value: 1000.0

588644
type: LocalParameter
units: 456180
value: 0.0

521979
type: SpeciesReference
stoichiometry: 1.0
species: 577792

577792
type: Species
notes: FORMULA: C30H27N3O15 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Enterochelin

522015
type: SpeciesReference
stoichiometry: 1.0
species: 576849

576849
type: Species
notes: FORMULA: C30H27N3O15 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Enterochelin

577661
type: Species
notes: FORMULA: C5H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Oxoglutarate

578606
type: Reaction
kinetic law: 465105
reactant: 465092
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Quinate exchange

583265
type: LocalParameter
units: 456180
value: 0.0

583264
type: LocalParameter
units: 456180
value: 0.0

583262
type: LocalParameter
units: 456180
value: 1000.0

583261
type: LocalParameter
units: 456180
value: 0.0

465092
type: SpeciesReference
stoichiometry: 1.0
species: 577320

577320
type: Species
notes: FORMULA: C7H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Quinate

580514
type: Reaction
reactant: 552216
kinetic law: 552264
reversible: false
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
product: 552252
product: 552240
name: Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:0)
reactant: 552228
fast: false

552216
type: SpeciesReference
stoichiometry: 1.0
species: 573842

573842
type: Species
notes: FORMULA: C23H48NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)

591302
type: LocalParameter
units: 456180
value: 0.0

591300
type: LocalParameter
units: 456180
value: 0.0

591299
type: LocalParameter
units: 456180
value: 1000.0

591297
type: LocalParameter
units: 456180
value: 0.0

552252
type: SpeciesReference
stoichiometry: 1.0
species: 574871

552240
type: SpeciesReference
stoichiometry: 1.0
species: 574325

574325
type: Species
notes: FORMULA: C60H116O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: acyl phosphatidylglycerol (n-C18:0)

552228
type: SpeciesReference
stoichiometry: 1.0
species: 575731

575731
type: Species
notes: FORMULA: C42H82O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphatidylglycerol (dioctadecanoyl, n-C18:0)

579133
type: Reaction
kinetic law: 485859
product: 485847
reactant: 485835
notes: GENE_ASSOCIATION: b3223 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
reversible: true
name: N-acetylmannosamine 6-phosphate epimerase

585596
type: LocalParameter
units: 456180
value: 0.0

585595
type: LocalParameter
units: 456180
value: 0.0

585593
type: LocalParameter
units: 456180
value: 1000.0

585592
type: LocalParameter
units: 456180
value: -1000.0

485847
type: SpeciesReference
stoichiometry: 1.0
species: 574199

485835
type: SpeciesReference
stoichiometry: 1.0
species: 574209

574209
type: Species
notes: FORMULA: C8H14NO9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-mannosamine 6-phosphate

581273
type: Reaction
reactant: 601395
name: Phosphonate hydrogenase (periplasm)
notes: GENE_ASSOCIATION: b0383 SUBSYSTEM: Unassigned EC Number:
kinetic law: 601444
reversible: false
product: 601420
fast: false
reactant: 601408
product: 601432

601395
type: SpeciesReference
stoichiometry: 1.0
species: 577890

594521
type: LocalParameter
units: 456180
value: 0.0

594520
type: LocalParameter
units: 456180
value: 0.0

594518
type: LocalParameter
units: 456180
value: 1000.0

594517
type: LocalParameter
units: 456180
value: 0.0

601420
type: SpeciesReference
stoichiometry: 1.0
species: 577889

577889
type: Species
notes: FORMULA: H2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: H2

601408
type: SpeciesReference
stoichiometry: 1.0
species: 578087

578087
type: Species
notes: FORMULA: HO3P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphonate

601432
type: SpeciesReference
stoichiometry: 1.0
species: 578076

577766
type: Species
notes: FORMULA: C2H6S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Dimethyl sulfide

578756
type: Reaction
kinetic law: 468600
product: 468588
reactant: 468575
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) transporter via facilitated diffusion (periplasm)

583839
type: LocalParameter
units: 456180
value: 0.0

583838
type: LocalParameter
units: 456180
value: 0.0

583836
type: LocalParameter
units: 456180
value: 1000.0

583835
type: LocalParameter
units: 456180
value: 0.0

468588
type: SpeciesReference
stoichiometry: 1.0
species: 573846

573846
type: Species
notes: FORMULA: C18H36O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)

468575
type: SpeciesReference
stoichiometry: 1.0
species: 577590

577590
type: Species
notes: FORMULA: C18H36O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)

577398
type: Species
notes: FORMULA: C10H14N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Thymidine

581186
type: Reaction
kinetic law: 597609
product: 597597
product: 597573
fast: false
reactant: 597549
reactant: 597561
product: 597585
reversible: false
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.32
name: Phospholipase A1 (phosphatidylglycerol, n-C18:1) (periplasm)

594202
type: LocalParameter
units: 456180
value: 0.0

594201
type: LocalParameter
units: 456180
value: 0.0

594199
type: LocalParameter
units: 456180
value: 1000.0

594198
type: LocalParameter
units: 456180
value: 0.0

597597
type: SpeciesReference
stoichiometry: 1.0
species: 578019

597573
type: SpeciesReference
stoichiometry: 1.0
species: 577599

577599
type: Species
notes: FORMULA: C24H46O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)

597549
type: SpeciesReference
stoichiometry: 1.0
species: 577890

597561
type: SpeciesReference
stoichiometry: 1.0
species: 578058

578058
type: Species
notes: FORMULA: C42H78O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)

597585
type: SpeciesReference
stoichiometry: 1.0
species: 577887

580427
type: Reaction
kinetic law: 547770
product: 547758
reactant: 547746
notes: GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-alanyl-L-glutamate transport via diffusion (extracellular to periplasm)

590950
type: LocalParameter
units: 456180
value: 0.0

590948
type: LocalParameter
units: 456180
value: 0.0

590947
type: LocalParameter
units: 456180
value: 1000.0

590945
type: LocalParameter
units: 456180
value: -1000.0

547758
type: SpeciesReference
stoichiometry: 1.0
species: 577635

577635
type: Species
notes: FORMULA: C8H13N2O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-alanine-L-glutamate

547746
type: SpeciesReference
stoichiometry: 1.0
species: 576559

576559
type: Species
notes: FORMULA: C8H13N2O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-alanine-L-glutamate

577868
type: Species
notes: FORMULA: C3H6O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Glyceraldehyde

577795
type: Species
notes: FORMULA: C2H5O3S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: ethanesulfonate

578324
type: Reaction
kinetic law: 460551
reactant: 460539
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: coprogen unloaded (no Fe(III)) exchange

582305
type: LocalParameter
units: 456180
value: 0.0

582304
type: LocalParameter
units: 456180
value: 0.0

582302
type: LocalParameter
units: 456180
value: 1000.0

582301
type: LocalParameter
units: 456180
value: 0.0

460539
type: SpeciesReference
stoichiometry: 1.0
species: 576724

576724
type: Species
notes: FORMULA: C35H52N6O13 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: coprogen unloaded (no Fe(III))

577413
type: Species
notes: FORMULA: O3S2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Thiosulfate

580212
type: Reaction
kinetic law: 538283
product: 538270
reactant: 538257
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: GTP transport via diffusion (extracellular to periplasm)

590069
type: LocalParameter
units: 456180
value: 0.0

590068
type: LocalParameter
units: 456180
value: 0.0

590067
type: LocalParameter
units: 456180
value: 1000.0

590065
type: LocalParameter
units: 456180
value: -1000.0

538270
type: SpeciesReference
stoichiometry: 1.0
species: 577884

577884
type: Species
notes: FORMULA: C10H12N5O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: GTP

538257
type: SpeciesReference
stoichiometry: 1.0
species: 577035

577035
type: Species
notes: FORMULA: C10H12N5O14P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: GTP

574862
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glucose 1-phosphate

581729
type: Reaction
fast: false
reactant: 621016
name: undecaprenyl-diphosphatase
product: 621052
reversible: false
product: 621040
notes: GENE_ASSOCIATION: (b0841 or b1278 or b3057) SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 3.6.1.27
product: 621028
kinetic law: 621065
reactant: 621004

621016
type: SpeciesReference
stoichiometry: 1.0
species: 576364

576364
type: Species
notes: FORMULA: C55H89O7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Undecaprenyl diphosphate

621052
type: SpeciesReference
stoichiometry: 1.0
species: 576367

621040
type: SpeciesReference
stoichiometry: 1.0
species: 575785

621028
type: SpeciesReference
stoichiometry: 1.0
species: 575090

596203
type: LocalParameter
units: 456180
value: 0.0

596201
type: LocalParameter
units: 456180
value: 0.0

596200
type: LocalParameter
units: 456180
value: 1000.0

596198
type: LocalParameter
units: 456180
value: 0.0

621004
type: SpeciesReference
stoichiometry: 1.0
species: 575099

579079
type: Reaction
kinetic law: 483341
product: 483329
reactant: 483317
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-alanyl-D-alanine (DalaDala) transport via diffusion (extracellular to periplasm)

585376
type: LocalParameter
units: 456180
value: 0.0

585375
type: LocalParameter
units: 456180
value: 0.0

585373
type: LocalParameter
units: 456180
value: 1000.0

585372
type: LocalParameter
units: 456180
value: -1000.0

483329
type: SpeciesReference
stoichiometry: 1.0
species: 577667

577667
type: Species
notes: FORMULA: C6H12N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Alanyl-D-alanine

483317
type: SpeciesReference
stoichiometry: 1.0
species: 576625

576625
type: Species
notes: FORMULA: C6H12N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Alanyl-D-alanine

580362
type: Reaction
fast: false
product: 544644
kinetic law: 544656
reactant: 544608
reversible: true
notes: GENE_ASSOCIATION: b3770 SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism EC Number: 2.6.1.42
reactant: 544620
product: 544632
name: isoleucine transaminase

544644
type: SpeciesReference
stoichiometry: 1.0
species: 574991

590674
type: LocalParameter
units: 456180
value: 0.0

590672
type: LocalParameter
units: 456180
value: 0.0

590671
type: LocalParameter
units: 456180
value: 1000.0

590669
type: LocalParameter
units: 456180
value: -1000.0

544608
type: SpeciesReference
stoichiometry: 1.0
species: 574263

574263
type: Species
notes: FORMULA: C5H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Oxoglutarate

544620
type: SpeciesReference
stoichiometry: 1.0
species: 575222

544632
type: SpeciesReference
stoichiometry: 1.0
species: 574026

574026
type: Species
notes: FORMULA: C6H9O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (S)-3-Methyl-2-oxopentanoate

581099
type: Reaction
kinetic law: 586219
product: 586146
reactant: 586109
notes: GENE_ASSOCIATION: (b2690 or b0688) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.4.2.2
fast: false
reversible: true
name: phosphoglucomutase

593878
type: LocalParameter
units: 456180
value: 0.0

593876
type: LocalParameter
units: 456180
value: 0.0

593875
type: LocalParameter
units: 456180
value: 1000.0

593873
type: LocalParameter
units: 456180
value: -1000.0

586146
type: SpeciesReference
stoichiometry: 1.0
species: 574883

586109
type: SpeciesReference
stoichiometry: 1.0
species: 574862

580545
type: Reaction
kinetic law: 553894
product: 553870
name: lysine decarboxylase
notes: GENE_ASSOCIATION: (b0186 or b4131) SUBSYSTEM: Threonine and Lysine Metabolism EC Number: 4.1.1.18
fast: false
product: 553882
reversible: false
reactant: 553846
reactant: 553858

591434
type: LocalParameter
units: 456180
value: 0.0

591432
type: LocalParameter
units: 456180
value: 0.0

591431
type: LocalParameter
units: 456180
value: 1000.0

591429
type: LocalParameter
units: 456180
value: 0.0

553870
type: SpeciesReference
stoichiometry: 1.0
species: 573784

573784
type: Species
notes: FORMULA: C5H16N2 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,5-Diaminopentane

553882
type: SpeciesReference
stoichiometry: 1.0
species: 574476

553846
type: SpeciesReference
stoichiometry: 1.0
species: 575090

553858
type: SpeciesReference
stoichiometry: 1.0
species: 575342

575342
type: Species
notes: FORMULA: C6H15N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lysine

580692
type: Reaction
reactant: 560131
kinetic law: 560167
reactant: 560119
name: Maltodextrin glucosidase (maltotetraose)
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
reversible: false
product: 560143
fast: false
product: 560155

560131
type: SpeciesReference
stoichiometry: 1.0
species: 575384

592040
type: LocalParameter
units: 456180
value: 0.0

592039
type: LocalParameter
units: 456180
value: 0.0

592036
type: LocalParameter
units: 456180
value: 1000.0

592035
type: LocalParameter
units: 456180
value: 0.0

560119
type: SpeciesReference
stoichiometry: 1.0
species: 575099

560143
type: SpeciesReference
stoichiometry: 1.0
species: 574970

560155
type: SpeciesReference
stoichiometry: 1.0
species: 575381

575381
type: Species
notes: FORMULA: C18H32O16 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltotriose

577817
type: Species
notes: FORMULA: CH1O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Formate

580458
type: Reaction
kinetic law: 549290
product: 549266
product: 549278
reversible: false
notes: GENE_ASSOCIATION: b4386 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reactant: 549254
reactant: 549242
fast: false
name: Lipoate-ATP adenylate transferase

591076
type: LocalParameter
units: 456180
value: 0.0

591075
type: LocalParameter
units: 456180
value: 0.0

591073
type: LocalParameter
units: 456180
value: 1000.0

591072
type: LocalParameter
units: 456180
value: 0.0

549266
type: SpeciesReference
stoichiometry: 1.0
species: 575333

575333
type: Species
notes: FORMULA: C18H25N5O8PS2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: lipoyl-AMP

549278
type: SpeciesReference
stoichiometry: 1.0
species: 575824

549254
type: SpeciesReference
stoichiometry: 1.0
species: 575336

575336
type: Species
notes: FORMULA: C8H14O2S2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Lipoate

549242
type: SpeciesReference
stoichiometry: 1.0
species: 574373

579322
type: Reaction
product: 495617
reversible: false
reactant: 495593
notes: GENE_ASSOCIATION: b3918 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.6.1.26
product: 495605
kinetic law: 495641
name: CDP-Diacylglycerol pyrophostatase (n-C18:0)
product: 495629
fast: false
reactant: 495580

495617
type: SpeciesReference
stoichiometry: 2.0
species: 575090

495593
type: SpeciesReference
stoichiometry: 1.0
species: 575099

495605
type: SpeciesReference
stoichiometry: 1.0
species: 574474

586403
type: LocalParameter
units: 456180
value: 0.0

586401
type: LocalParameter
units: 456180
value: 0.0

586400
type: LocalParameter
units: 456180
value: 1000.0

586398
type: LocalParameter
units: 456180
value: 0.0

495629
type: SpeciesReference
stoichiometry: 1.0
species: 575660

575660
type: Species
notes: FORMULA: C39H75O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-dioctadecanoyl-sn-glycerol 3-phosphate

495580
type: SpeciesReference
stoichiometry: 1.0
species: 574446

574446
type: Species
notes: FORMULA: C48H87N3O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CDP-1,2-dioctadecanoylglycerol

581651
type: Reaction
name: thiamine-phosphate kinase
product: 617743
kinetic law: 617767
reactant: 617719
reversible: false
fast: false
product: 617755
reactant: 617731
notes: GENE_ASSOCIATION: b0417 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.4.16

617743
type: SpeciesReference
stoichiometry: 1.0
species: 574239

595917
type: LocalParameter
units: 456180
value: 0.0

595915
type: LocalParameter
units: 456180
value: 0.0

595914
type: LocalParameter
units: 456180
value: 1000.0

595912
type: LocalParameter
units: 456180
value: 0.0

617719
type: SpeciesReference
stoichiometry: 1.0
species: 574373

617755
type: SpeciesReference
stoichiometry: 1.0
species: 576181

576181
type: Species
notes: FORMULA: C12H16N4O7P2S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Thiamine diphosphate

617731
type: SpeciesReference
stoichiometry: 1.0
species: 576175

575390
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannose 1-phosphate

581478
type: Reaction
kinetic law: 610424
product: 610412
reactant: 610400
notes: GENE_ASSOCIATION: (b1377 or b0929 or b2215 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: selenate transport via diffusion (extracellular to periplasm)

595250
type: LocalParameter
units: 456180
value: 0.0

595248
type: LocalParameter
units: 456180
value: 0.0

595247
type: LocalParameter
units: 456180
value: 1000.0

595246
type: LocalParameter
units: 456180
value: -1000.0

610412
type: SpeciesReference
stoichiometry: 1.0
species: 578111

578111
type: Species
notes: FORMULA: O4Se CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Selenate

610400
type: SpeciesReference
stoichiometry: 1.0
species: 577338

577338
type: Species
notes: FORMULA: O4Se CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Selenate

574092
type: Species
notes: FORMULA: S4Fe4 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: [4Fe-4S] iron-sulfur cluster

578225
type: Reaction
kinetic law: 458948
reactant: 458935
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: 3-hydroxycinnamic acid exchange

581948
type: LocalParameter
units: 456180
value: 0.0

581947
type: LocalParameter
units: 456180
value: 0.0

581946
type: LocalParameter
units: 456180
value: 1000.0

581945
type: LocalParameter
units: 456180
value: 0.0

458935
type: SpeciesReference
stoichiometry: 1.0
species: 576526

576526
type: Species
notes: FORMULA: C9H7O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 3-hydroxycinnamic acid

579235
type: Reaction
reactant: 491046
product: 491094
product: 491082
notes: GENE_ASSOCIATION: b2574 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
product: 491070
fast: false
name: L-aspartate oxidase
kinetic law: 491106
reactant: 491058

491046
type: SpeciesReference
stoichiometry: 1.0
species: 574363

491094
type: SpeciesReference
stoichiometry: 1.0
species: 575926

575926
type: Species
notes: FORMULA: C49H76O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ubiquinol-8

491082
type: SpeciesReference
stoichiometry: 1.0
species: 575204

575204
type: Species
notes: FORMULA: C4H3NO4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Iminoaspartate

491070
type: SpeciesReference
stoichiometry: 1.0
species: 575090

586045
type: LocalParameter
units: 456180
value: 0.0

586044
type: LocalParameter
units: 456180
value: 0.0

586042
type: LocalParameter
units: 456180
value: 1000.0

586041
type: LocalParameter
units: 456180
value: 0.0

491058
type: SpeciesReference
stoichiometry: 1.0
species: 575923

575923
type: Species
notes: FORMULA: C49H74O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ubiquinone-8

581564
type: Reaction
name: sulfate transport via ABC system (periplasm)
product: 614037
reactant: 613965
notes: GENE_ASSOCIATION: ((b2422 and b2425 and b2424 and b2423) or (b0763 and b0764 and b0765) or (b2422 and b2424 and b2423 and b3917)) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 614025
reversible: false
reactant: 613989
product: 614013
product: 614001
fast: false
kinetic law: 614050
reactant: 613977

614037
type: SpeciesReference
stoichiometry: 1.0
species: 576052

576052
type: Species
notes: FORMULA: O4S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Sulfate

613965
type: SpeciesReference
stoichiometry: 1.0
species: 574373

614025
type: SpeciesReference
stoichiometry: 1.0
species: 575785

613989
type: SpeciesReference
stoichiometry: 1.0
species: 578121

578121
type: Species
notes: FORMULA: O4S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Sulfate

614013
type: SpeciesReference
stoichiometry: 1.0
species: 575090

614001
type: SpeciesReference
stoichiometry: 1.0
species: 574239

595592
type: LocalParameter
units: 456180
value: 0.0

595591
type: LocalParameter
units: 456180
value: 0.0

595589
type: LocalParameter
units: 456180
value: 1000.0

595588
type: LocalParameter
units: 456180
value: 0.0

613977
type: SpeciesReference
stoichiometry: 1.0
species: 575099

576834
type: Species
notes: FORMULA: C10H13N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: dTMP

580961
type: Reaction
product: 571919
fast: false
reversible: false
product: 571895
name: 2-octaprenyl-6-hydroxyphenol methylase
notes: GENE_ASSOCIATION: b2232 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
kinetic law: 571931
reactant: 571871
product: 571907
reactant: 571883

571919
type: SpeciesReference
stoichiometry: 1.0
species: 575090

571895
type: SpeciesReference
stoichiometry: 1.0
species: 573928

573928
type: Species
notes: FORMULA: C47H72O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Octaprenyl-6-methoxyphenol

593322
type: LocalParameter
units: 456180
value: 0.0

593321
type: LocalParameter
units: 456180
value: 0.0

593318
type: LocalParameter
units: 456180
value: 1000.0

593317
type: LocalParameter
units: 456180
value: 0.0

571871
type: SpeciesReference
stoichiometry: 1.0
species: 573920

573920
type: Species
notes: FORMULA: C46H70O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Octaprenyl-6-hydroxyphenol

571907
type: SpeciesReference
stoichiometry: 1.0
species: 574255

574255
type: Species
notes: FORMULA: C14H20N6O5S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: S-Adenosyl-L-homocysteine

571883
type: SpeciesReference
stoichiometry: 1.0
species: 574289

574289
type: Species
notes: FORMULA: C15H23N6O5S CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: S-Adenosyl-L-methionine

579374
type: Reaction
kinetic law: 498067
product: 498055
product: 498043
reactant: 498031
notes: GENE_ASSOCIATION: (b0789 or b1249) SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
fast: false
reversible: true
name: cardiolipin synthase (periplasmic, n-C18:1)

586617
type: LocalParameter
units: 456180
value: 0.0

586616
type: LocalParameter
units: 456180
value: 0.0

586614
type: LocalParameter
units: 456180
value: 1000.0

586613
type: LocalParameter
units: 456180
value: -1000.0

498055
type: SpeciesReference
stoichiometry: 1.0
species: 577871

498043
type: SpeciesReference
stoichiometry: 1.0
species: 577719

577719
type: Species
notes: FORMULA: C81H148O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetraoctadec-11-enoyl, n-C18:1)

498031
type: SpeciesReference
stoichiometry: 2.0
species: 578058

581477
type: Reaction
reactant: 610328
product: 610376
name: selenate reductase
kinetic law: 610388
reactant: 610340
product: 610352
product: 610364
fast: false
notes: GENE_ASSOCIATION: (b1587 and b1588 and b1589 and b1590) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reversible: false

610328
type: SpeciesReference
stoichiometry: 1.0
species: 575483

610376
type: SpeciesReference
stoichiometry: 1.0
species: 576043

576043
type: Species
notes: FORMULA: O3Se CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: selenite

595245
type: LocalParameter
units: 456180
value: 0.0

595244
type: LocalParameter
units: 456180
value: 0.0

595242
type: LocalParameter
units: 456180
value: 1000.0

595241
type: LocalParameter
units: 456180
value: 0.0

610340
type: SpeciesReference
stoichiometry: 1.0
species: 576004

576004
type: Species
notes: FORMULA: O4Se CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Selenate

610352
type: SpeciesReference
stoichiometry: 1.0
species: 575099

610364
type: SpeciesReference
stoichiometry: 1.0
species: 575486

574715
type: Species
notes: FORMULA: C9H11N2O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dUDP

581277
type: Reaction
kinetic law: 601696
product: 601684
reactant: 601672
notes: GENE_ASSOCIATION: b1262 SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 5.3.1.24
fast: false
reversible: false
name: phosphoribosylanthranilate isomerase (irreversible)

594543
type: LocalParameter
units: 456180
value: 0.0

594542
type: LocalParameter
units: 456180
value: 0.0

594540
type: LocalParameter
units: 456180
value: 1000.0

594539
type: LocalParameter
units: 456180
value: 0.0

601684
type: SpeciesReference
stoichiometry: 1.0
species: 573866

573866
type: Species
notes: FORMULA: C12H13NO9P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate

601672
type: SpeciesReference
stoichiometry: 1.0
species: 575842

575842
type: Species
notes: FORMULA: C12H13NO9P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-(5-Phospho-D-ribosyl)anthranilate

580874
type: Reaction
product: 567908
kinetic law: 567932
product: 567920
reactant: 567883
fast: false
name: 5'-nucleotidase (dCMP)
reactant: 567896
notes: GENE_ASSOCIATION: (b0480 or b4055) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.3.5
reversible: false

567908
type: SpeciesReference
stoichiometry: 1.0
species: 577755

577755
type: Species
notes: FORMULA: C9H13N3O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Deoxycytidine

592894
type: LocalParameter
units: 456180
value: 0.0

592891
type: LocalParameter
units: 456180
value: 0.0

592890
type: LocalParameter
units: 456180
value: 1000.0

592887
type: LocalParameter
units: 456180
value: 0.0

567920
type: SpeciesReference
stoichiometry: 1.0
species: 578076

567883
type: SpeciesReference
stoichiometry: 1.0
species: 577754

577754
type: Species
notes: FORMULA: C9H12N3O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: dCMP

567896
type: SpeciesReference
stoichiometry: 1.0
species: 577890

580367
type: Reaction
product: 544885
notes: GENE_ASSOCIATION: b0401 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reactant: 544849
reversible: true
kinetic law: 544897
name: L-isoleucine reversible transport via proton symport (periplasm)
product: 544873
reactant: 544861

544885
type: SpeciesReference
stoichiometry: 1.0
species: 575222

544849
type: SpeciesReference
stoichiometry: 1.0
species: 577887

590690
type: LocalParameter
units: 456180
value: 0.0

590689
type: LocalParameter
units: 456180
value: 0.0

590687
type: LocalParameter
units: 456180
value: 1000.0

590686
type: LocalParameter
units: 456180
value: -1000.0

544873
type: SpeciesReference
stoichiometry: 1.0
species: 575090

544861
type: SpeciesReference
stoichiometry: 1.0
species: 577907

577907
type: Species
notes: FORMULA: C6H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Isoleucine

579287
type: Reaction
reactant: 493695
product: 493743
name: tungsten bispterin guanine dinucleotide synthase
notes: GENE_ASSOCIATION: (b3857 or (b3857 and b3856)) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 493731
reactant: 493707
kinetic law: 493756
fast: false
reversible: false
reactant: 493719

493695
type: SpeciesReference
stoichiometry: 1.0
species: 574407

574407
type: Species
notes: FORMULA: C30H32N15O20P3S4W CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tungsten bispterin cofactor mono-guanine dinucleotide

493743
type: SpeciesReference
stoichiometry: 1.0
species: 575824

493731
type: SpeciesReference
stoichiometry: 1.0
species: 574409

574409
type: Species
notes: FORMULA: C40H44N20O27P4S4W CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tungsten bispterin cofactor guanine dinucleotide

493707
type: SpeciesReference
stoichiometry: 1.0
species: 575081

586260
type: LocalParameter
units: 456180
value: 0.0

586258
type: LocalParameter
units: 456180
value: 0.0

586257
type: LocalParameter
units: 456180
value: 1000.0

586255
type: LocalParameter
units: 456180
value: 0.0

493719
type: SpeciesReference
stoichiometry: 1.0
species: 575090

581396
type: Reaction
product: 606599
reactant: 606562
notes: GENE_ASSOCIATION: b0025 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.1.26
fast: false
product: 606587
reversible: false
kinetic law: 606611
name: riboflavin kinase
product: 606575
reactant: 606550

606599
type: SpeciesReference
stoichiometry: 1.0
species: 575090

606562
type: SpeciesReference
stoichiometry: 1.0
species: 575965

606587
type: SpeciesReference
stoichiometry: 1.0
species: 574823

594977
type: LocalParameter
units: 456180
value: 0.0

594976
type: LocalParameter
units: 456180
value: 0.0

594974
type: LocalParameter
units: 456180
value: 1000.0

594973
type: LocalParameter
units: 456180
value: 0.0

606575
type: SpeciesReference
stoichiometry: 1.0
species: 574239

606550
type: SpeciesReference
stoichiometry: 1.0
species: 574373

573852
type: Species
notes: FORMULA: C22H44O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)

578088
type: Species
notes: FORMULA: C5H9NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Proline

580697
type: Reaction
reversible: false
kinetic law: 560347
reactant: 560311
product: 560323
name: Maltodextrin glucosidase (maltoheptaose)
product: 560335
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
reactant: 560299

592061
type: LocalParameter
units: 456180
value: 0.0

592059
type: LocalParameter
units: 456180
value: 0.0

592058
type: LocalParameter
units: 456180
value: 1000.0

592055
type: LocalParameter
units: 456180
value: 0.0

560311
type: SpeciesReference
stoichiometry: 1.0
species: 575372

575372
type: Species
notes: FORMULA: C42H72O36 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltoheptaose

560323
type: SpeciesReference
stoichiometry: 1.0
species: 574970

560335
type: SpeciesReference
stoichiometry: 1.0
species: 575375

575375
type: Species
notes: FORMULA: C36H62O31 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Maltohexaose

560299
type: SpeciesReference
stoichiometry: 1.0
species: 575099

575210
type: Species
notes: FORMULA: C6H5O7 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Isocitrate

579207
type: Reaction
product: 489641
product: 489617
name: Arginyl-tRNA synthetase
reactant: 489593
product: 489629
fast: false
reactant: 489581
kinetic law: 489653
reactant: 489605
notes: GENE_ASSOCIATION: b1876 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.19
reversible: false

489641
type: SpeciesReference
stoichiometry: 1.0
species: 575824

489617
type: SpeciesReference
stoichiometry: 1.0
species: 574295

489593
type: SpeciesReference
stoichiometry: 1.0
species: 574373

489629
type: SpeciesReference
stoichiometry: 1.0
species: 574351

574351
type: Species
notes: FORMULA: C6H14N4OR CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Arginyl-tRNA(Arg)

489581
type: SpeciesReference
stoichiometry: 1.0
species: 574347

585904
type: LocalParameter
units: 456180
value: 0.0

585903
type: LocalParameter
units: 456180
value: 0.0

585901
type: LocalParameter
units: 456180
value: 1000.0

585900
type: LocalParameter
units: 456180
value: 0.0

489605
type: SpeciesReference
stoichiometry: 1.0
species: 576232

576232
type: Species
notes: FORMULA: R CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tRNA(Arg)

578406
type: Reaction
kinetic law: 461880
reactant: 461867
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Glucose 1-phosphate exchange

582596
type: LocalParameter
units: 456180
value: 0.0

582595
type: LocalParameter
units: 456180
value: 0.0

582594
type: LocalParameter
units: 456180
value: 1000.0

582593
type: LocalParameter
units: 456180
value: 0.0

461867
type: SpeciesReference
stoichiometry: 1.0
species: 576921

576921
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glucose 1-phosphate

576601
type: Species
notes: FORMULA: C10H13N5O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Adenosine

578672
type: Reaction
kinetic law: 466165
reactant: 466153
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: UMP exchange

583502
type: LocalParameter
units: 456180
value: 0.0

583501
type: LocalParameter
units: 456180
value: 0.0

583499
type: LocalParameter
units: 456180
value: 1000.0

583498
type: LocalParameter
units: 456180
value: 0.0

466153
type: SpeciesReference
stoichiometry: 1.0
species: 577452

577452
type: Species
notes: FORMULA: C9H11N2O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: UMP

581349
type: Reaction
reactant: 604752
name: purine-nucleoside phosphorylase (Deoxyguanosine)
fast: false
product: 604788
kinetic law: 604800
notes: GENE_ASSOCIATION: (b2407 or b4384) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.4.2.1
reactant: 604764
product: 604776
reversible: true

604752
type: SpeciesReference
stoichiometry: 1.0
species: 574595

574595
type: Species
notes: FORMULA: C10H13N5O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Deoxyguanosine

604788
type: SpeciesReference
stoichiometry: 1.0
species: 575087

575087
type: Species
notes: FORMULA: C5H5N5O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Guanine

594807
type: LocalParameter
units: 456180
value: 0.0

594806
type: LocalParameter
units: 456180
value: 0.0

594804
type: LocalParameter
units: 456180
value: 1000.0

594803
type: LocalParameter
units: 456180
value: -1000.0

604764
type: SpeciesReference
stoichiometry: 1.0
species: 575785

604776
type: SpeciesReference
stoichiometry: 1.0
species: 573888

573888
type: Species
notes: FORMULA: C5H9O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Deoxy-D-ribose 1-phosphate

579495
type: Reaction
kinetic law: 503979
product: 503967
reactant: 503955
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-lactate transport via diffusion (extracellular to periplasm)

587117
type: LocalParameter
units: 456180
value: 0.0

587115
type: LocalParameter
units: 456180
value: 0.0

587114
type: LocalParameter
units: 456180
value: 1000.0

587112
type: LocalParameter
units: 456180
value: -1000.0

503967
type: SpeciesReference
stoichiometry: 1.0
species: 577919

577919
type: Species
notes: FORMULA: C3H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Lactate

503955
type: SpeciesReference
stoichiometry: 1.0
species: 577110

575938
type: Species
notes: FORMULA: C5H9O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: alpha-D-Ribose 1-phosphate

575881
type: Species
notes: FORMULA: C34H61N1O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylserine (ditetradec-7-enoyl, n-C14:1)

578585
type: Reaction
kinetic law: 464768
reactant: 464756
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: (R)-Pantothenate exchange

583189
type: LocalParameter
units: 456180
value: 0.0

583187
type: LocalParameter
units: 456180
value: 0.0

583186
type: LocalParameter
units: 456180
value: 1000.0

583184
type: LocalParameter
units: 456180
value: 0.0

464756
type: SpeciesReference
stoichiometry: 1.0
species: 577278

577278
type: Species
notes: FORMULA: C9H16NO5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: (R)-Pantothenate

576730
type: Species
notes: FORMULA: C7H15NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Carnitine

580012
type: Reaction
name: a-galactosidase (melibiose)
reactant: 528173
kinetic law: 528209
fast: false
product: 528197
reactant: 528161
notes: GENE_ASSOCIATION: b4119 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 3.2.1.22
product: 528185
reversible: false

528173
type: SpeciesReference
stoichiometry: 1.0
species: 575405

575405
type: Species
notes: FORMULA: C12H22O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Melibiose

589209
type: LocalParameter
units: 456180
value: 0.0

589208
type: LocalParameter
units: 456180
value: 0.0

589206
type: LocalParameter
units: 456180
value: 1000.0

589205
type: LocalParameter
units: 456180
value: 0.0

528197
type: SpeciesReference
stoichiometry: 1.0
species: 574970

528161
type: SpeciesReference
stoichiometry: 1.0
species: 575099

528185
type: SpeciesReference
stoichiometry: 1.0
species: 574889

574889
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Galactose

581072
type: Reaction
reactant: 581608
kinetic law: 581912
fast: false
product: 581644
product: 581656
product: 581632
reversible: false
notes: GENE_ASSOCIATION: (b3916 or b1723) SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.7.1.11
reactant: 581596
name: phosphofructokinase

581608
type: SpeciesReference
stoichiometry: 1.0
species: 574760

574760
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Fructose 6-phosphate

593779
type: LocalParameter
units: 456180
value: 0.0

593777
type: LocalParameter
units: 456180
value: 0.0

593776
type: LocalParameter
units: 456180
value: 1000.0

593774
type: LocalParameter
units: 456180
value: 0.0

581644
type: SpeciesReference
stoichiometry: 1.0
species: 574778

574778
type: Species
notes: FORMULA: C6H10O12P2 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Fructose 1,6-bisphosphate

581656
type: SpeciesReference
stoichiometry: 1.0
species: 575090

581632
type: SpeciesReference
stoichiometry: 1.0
species: 574239

581596
type: SpeciesReference
stoichiometry: 1.0
species: 574373

573848
type: Species
notes: FORMULA: C20H40O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)

578987
type: Reaction
reversible: false
fast: false
reactant: 479071
kinetic law: 479132
name: acyl-(acyl carrier protein):phosphate acyltransferase (C18:1)
reactant: 479095
notes: GENE_ASSOCIATION: (b1094 and b1090) SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
reactant: 479083
product: 479120
product: 479108

479071
type: SpeciesReference
stoichiometry: 1.0
species: 575090

584758
type: LocalParameter
units: 456180
value: 0.0

584756
type: LocalParameter
units: 456180
value: 0.0

584755
type: LocalParameter
units: 456180
value: 1000.0

584753
type: LocalParameter
units: 456180
value: 0.0

479095
type: SpeciesReference
stoichiometry: 1.0
species: 575785

479083
type: SpeciesReference
stoichiometry: 1.0
species: 575600

575600
type: Species
notes: FORMULA: C29H53N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)

479120
type: SpeciesReference
stoichiometry: 1.0
species: 575588

479108
type: SpeciesReference
stoichiometry: 1.0
species: 574155

578298
type: Reaction
kinetic law: 460140
reactant: 460128
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: butanesulfonate exchange

582216
type: LocalParameter
units: 456180
value: 0.0

582215
type: LocalParameter
units: 456180
value: 0.0

582213
type: LocalParameter
units: 456180
value: 1000.0

582212
type: LocalParameter
units: 456180
value: 0.0

460128
type: SpeciesReference
stoichiometry: 1.0
species: 576673

576673
type: Species
notes: FORMULA: C4H9O3S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: butanesulfonate

579415
type: Reaction
kinetic law: 500085
product: 500073
reactant: 500061
notes: GENE_ASSOCIATION: b0036 SUBSYSTEM: Oxidative Phosphorylation EC Number:
fast: false
reversible: true
name: carnitine-CoA racemase

586787
type: LocalParameter
units: 456180
value: 0.0

586786
type: LocalParameter
units: 456180
value: 0.0

586784
type: LocalParameter
units: 456180
value: 1000.0

586783
type: LocalParameter
units: 456180
value: -1000.0

500073
type: SpeciesReference
stoichiometry: 1.0
species: 574506

574506
type: Species
notes: FORMULA: C28H46N8O18P3S CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-carnitinyl-CoA

500061
type: SpeciesReference
stoichiometry: 1.0
species: 574509

581615
type: Reaction
kinetic law: 616079
reactant: 616019
product: 616067
reactant: 616031
notes: GENE_ASSOCIATION: b3616 SUBSYSTEM: Glycine and Serine Metabolism EC Number: 1.1.1.103
fast: false
reversible: false
product: 616043
name: L-threonine dehydrogenase
product: 616055

595779
type: LocalParameter
units: 456180
value: 0.0

595778
type: LocalParameter
units: 456180
value: 0.0

595776
type: LocalParameter
units: 456180
value: 1000.0

595775
type: LocalParameter
units: 456180
value: 0.0

616019
type: SpeciesReference
stoichiometry: 1.0
species: 575519

616067
type: SpeciesReference
stoichiometry: 1.0
species: 575522

616031
type: SpeciesReference
stoichiometry: 1.0
species: 576187

576187
type: Species
notes: FORMULA: C4H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Threonine

616043
type: SpeciesReference
stoichiometry: 1.0
species: 573864

573864
type: Species
notes: FORMULA: C4H7NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-2-Amino-3-oxobutanoate

616055
type: SpeciesReference
stoichiometry: 1.0
species: 575090

574108
type: Species
notes: FORMULA: C4H6O8P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Phospho-D-erythronate

574796
type: Species
notes: FORMULA: C27H42FeN9O12 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ferrichrome

578384
type: Reaction
kinetic law: 461515
reactant: 461503
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: ferric 2,3-dihydroxybenzoylserine exchange

582516
type: LocalParameter
units: 456180
value: 0.0

582515
type: LocalParameter
units: 456180
value: 0.0

582513
type: LocalParameter
units: 456180
value: 1000.0

582512
type: LocalParameter
units: 456180
value: 0.0

461503
type: SpeciesReference
stoichiometry: 1.0
species: 576876

576876
type: Species
notes: FORMULA: C10H10NO6Fe CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: ferric 2,3-dihydroxybenzoylserine

579741
type: Reaction
name: enterobacterial common antigen polymerase (periplasm)
reactant: 513833
kinetic law: 513881
reactant: 513821
product: 513869
product: 513845
reversible: false
product: 513857
fast: false
notes: GENE_ASSOCIATION: (b3793 and b3785) SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:

513833
type: SpeciesReference
stoichiometry: 1.0
species: 578174

578174
type: Species
notes: FORMULA: C79H126N3O22P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose

588010
type: LocalParameter
units: 456180
value: 0.0

588009
type: LocalParameter
units: 456180
value: 0.0

588007
type: LocalParameter
units: 456180
value: 1000.0

588006
type: LocalParameter
units: 456180
value: 0.0

513821
type: SpeciesReference
stoichiometry: 1.0
species: 577784

577784
type: Species
notes: FORMULA: C103H162N6O37P2 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (enterobacterial common antigen)x2 undecaprenyl-diphosphate

513869
type: SpeciesReference
stoichiometry: 1.0
species: 578163

578163
type: Species
notes: FORMULA: C55H89O7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Undecaprenyl diphosphate

513845
type: SpeciesReference
stoichiometry: 1.0
species: 577786

577786
type: Species
notes: FORMULA: C127H198N9O52P2 CHARGE: -5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (enterobacterial common antigen)x3 undecaprenyl-diphosphate

513857
type: SpeciesReference
stoichiometry: 1.0
species: 577887

578555
type: Reaction
kinetic law: 464270
reactant: 464258
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Ammonia exchange

583080
type: LocalParameter
units: 456180
value: 0.0

583079
type: LocalParameter
units: 456180
value: 0.0

583077
type: LocalParameter
units: 456180
value: 1000.0

583076
type: LocalParameter
units: 456180
value: -1000.0

464258
type: SpeciesReference
stoichiometry: 1.0
species: 577218

577218
type: Species
notes: FORMULA: H4N CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Ammonium

576010
type: Species
notes: FORMULA: H2O3PSe CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Selenophosphate

576864
type: Species
notes: FORMULA: CH2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Formaldehyde

575093
type: Species
notes: FORMULA: H2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: H2

581528
type: Reaction
name: spermidine transport out via proton antiport (periplasm)
kinetic law: 612502
reactant: 612465
product: 612489
reactant: 612453
notes: GENE_ASSOCIATION: (b1599 and b1600) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 612477
fast: false
reversible: false

595460
type: LocalParameter
units: 456180
value: 0.0

595459
type: LocalParameter
units: 456180
value: 0.0

595457
type: LocalParameter
units: 456180
value: 1000.0

595456
type: LocalParameter
units: 456180
value: 0.0

612465
type: SpeciesReference
stoichiometry: 1.0
species: 577887

612489
type: SpeciesReference
stoichiometry: 1.0
species: 578123

578123
type: Species
notes: FORMULA: C7H22N3 CHARGE: 3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Spermidine

612453
type: SpeciesReference
stoichiometry: 1.0
species: 576055

576055
type: Species
notes: FORMULA: C7H22N3 CHARGE: 3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Spermidine

612477
type: SpeciesReference
stoichiometry: 1.0
species: 575090

575830
type: Species
notes: FORMULA: C34H38N4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Protoporphyrinogen IX

581730
type: Reaction
reactant: 621089
product: 621113
product: 621101
name: Undecaprenyl diphosphate synthase
notes: GENE_ASSOCIATION: b0174 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reactant: 621077
reversible: false
fast: false
kinetic law: 621125

621089
type: SpeciesReference
stoichiometry: 8.0
species: 575243

575243
type: Species
notes: FORMULA: C5H9O7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Isopentenyl diphosphate

621113
type: SpeciesReference
stoichiometry: 1.0
species: 576364

621101
type: SpeciesReference
stoichiometry: 8.0
species: 575824

621077
type: SpeciesReference
stoichiometry: 1.0
species: 574841

574841
type: Species
notes: FORMULA: C15H25O7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Farnesyl diphosphate

596208
type: LocalParameter
units: 456180
value: 0.0

596207
type: LocalParameter
units: 456180
value: 0.0

596205
type: LocalParameter
units: 456180
value: 1000.0

596204
type: LocalParameter
units: 456180
value: 0.0

578297
type: Reaction
kinetic law: 460116
reactant: 460104
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Butyrate (n-C4:0) exchange

582211
type: LocalParameter
units: 456180
value: 0.0

582209
type: LocalParameter
units: 456180
value: 0.0

582208
type: LocalParameter
units: 456180
value: 1000.0

582206
type: LocalParameter
units: 456180
value: 0.0

460104
type: SpeciesReference
stoichiometry: 1.0
species: 576670

576670
type: Species
notes: FORMULA: C4H7O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Butyrate (n-C4:0)

576511
type: Species
notes: FORMULA: C6H9O6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 2-Dehydro-3-deoxy-D-gluconate

579711
type: Reaction
product: 512174
reactant: 512138
fast: false
notes: GENE_ASSOCIATION: b1288 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.3.1.9
reactant: 512150
kinetic law: 512186
product: 512162
reversible: false
reactant: 512125
name: enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)

512174
type: SpeciesReference
stoichiometry: 1.0
species: 575519

512138
type: SpeciesReference
stoichiometry: 1.0
species: 575522

512150
type: SpeciesReference
stoichiometry: 1.0
species: 576115

576115
type: Species
notes: FORMULA: C23H39N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-3-cis-5-dodecenoyl-[acyl-carrier protein]

587847
type: LocalParameter
units: 456180
value: 0.0

587845
type: LocalParameter
units: 456180
value: 0.0

587844
type: LocalParameter
units: 456180
value: 1000.0

587842
type: LocalParameter
units: 456180
value: 0.0

512162
type: SpeciesReference
stoichiometry: 1.0
species: 574429

574429
type: Species
notes: FORMULA: C23H41N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)

512125
type: SpeciesReference
stoichiometry: 1.0
species: 575090

578486
type: Reaction
kinetic law: 463158
reactant: 463146
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Hypoxanthine exchange

582833
type: LocalParameter
units: 456180
value: 0.0

582832
type: LocalParameter
units: 456180
value: 0.0

582830
type: LocalParameter
units: 456180
value: 1000.0

582829
type: LocalParameter
units: 456180
value: 0.0

463146
type: SpeciesReference
stoichiometry: 1.0
species: 577080

577080
type: Species
notes: FORMULA: C5H4N4O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Hypoxanthine

578169
type: Species
notes: FORMULA: C15H22N2O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: UDPgalactose

580998
type: Reaction
reactant: 573587
kinetic law: 573647
product: 573611
reversible: false
fast: false
reactant: 573575
name: 1-pyrroline-5-carboxylate dehydrogenase
product: 573635
product: 573623
reactant: 573599
notes: GENE_ASSOCIATION: b1014 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 1.5.1.12

573587
type: SpeciesReference
stoichiometry: 2.0
species: 575099

593498
type: LocalParameter
units: 456180
value: 0.0

593495
type: LocalParameter
units: 456180
value: 0.0

593494
type: LocalParameter
units: 456180
value: 1000.0

593491
type: LocalParameter
units: 456180
value: 0.0

573611
type: SpeciesReference
stoichiometry: 1.0
species: 574991

573575
type: SpeciesReference
stoichiometry: 1.0
species: 573796

573635
type: SpeciesReference
stoichiometry: 1.0
species: 575522

573623
type: SpeciesReference
stoichiometry: 1.0
species: 575090

573599
type: SpeciesReference
stoichiometry: 1.0
species: 575519

579367
type: Reaction
kinetic law: 497827
product: 497815
product: 497803
reactant: 497791
notes: GENE_ASSOCIATION: (b1249 or b0789) SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
fast: false
reversible: true
name: cardiolipin synthase (periplasmic, n-C14:0)

586590
type: LocalParameter
units: 456180
value: 0.0

586588
type: LocalParameter
units: 456180
value: 0.0

586587
type: LocalParameter
units: 456180
value: 1000.0

586585
type: LocalParameter
units: 456180
value: -1000.0

497815
type: SpeciesReference
stoichiometry: 1.0
species: 577871

497803
type: SpeciesReference
stoichiometry: 1.0
species: 577712

577712
type: Species
notes: FORMULA: C65H124O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: cardiolipin (tetratetradecanoyl, n-C14:0)

497791
type: SpeciesReference
stoichiometry: 2.0
species: 578051

578051
type: Species
notes: FORMULA: C34H66O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (ditetradecanoyl, n-C14:0)

578217
type: Reaction
kinetic law: 458826
reactant: 458813
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: 2-Dehydro-3-deoxy-D-gluconate exchange

581928
type: LocalParameter
units: 456180
value: 0.0

581927
type: LocalParameter
units: 456180
value: 0.0

581926
type: LocalParameter
units: 456180
value: 1000.0

581925
type: LocalParameter
units: 456180
value: 0.0

458813
type: SpeciesReference
stoichiometry: 1.0
species: 576511

579624
type: Reaction
kinetic law: 509929
product: 509917
reactant: 509905
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: true
name: Dimethyl sulfoxide transport via diffusion (periplasm)

587643
type: LocalParameter
units: 456180
value: 0.0

587642
type: LocalParameter
units: 456180
value: 0.0

587640
type: LocalParameter
units: 456180
value: 1000.0

587639
type: LocalParameter
units: 456180
value: -1000.0

509917
type: SpeciesReference
stoichiometry: 1.0
species: 574667

574667
type: Species
notes: FORMULA: C2H6OS CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dimethyl sulfoxide

509905
type: SpeciesReference
stoichiometry: 1.0
species: 577767

577767
type: Species
notes: FORMULA: C2H6OS CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Dimethyl sulfoxide

577539
type: Species
notes: FORMULA: C18H36O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)

577950
type: Species
notes: FORMULA: CH4O1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Methanol

576628
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Allose

577200
type: Species
notes: FORMULA: C6H14O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Mannitol

581810
type: Reaction
reactant: 624416
fast: false
product: 624441
reversible: false
kinetic law: 624465
product: 624428
name: xanthine dehydrogenase
reactant: 624404
product: 624453
notes: GENE_ASSOCIATION: (b2866 and b2867 and b2868) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 1.1.1.204
reactant: 624392

624416
type: SpeciesReference
stoichiometry: 1.0
species: 576448

576448
type: Species
notes: FORMULA: C5H4N4O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Xanthine

624441
type: SpeciesReference
stoichiometry: 1.0
species: 575522

596505
type: LocalParameter
units: 456180
value: 0.0

596504
type: LocalParameter
units: 456180
value: 0.0

596502
type: LocalParameter
units: 456180
value: 1000.0

596501
type: LocalParameter
units: 456180
value: 0.0

624428
type: SpeciesReference
stoichiometry: 1.0
species: 575090

624404
type: SpeciesReference
stoichiometry: 1.0
species: 575519

624453
type: SpeciesReference
stoichiometry: 1.0
species: 576424

576424
type: Species
notes: FORMULA: C5H4N4O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Urate

624392
type: SpeciesReference
stoichiometry: 1.0
species: 575099

579555
type: Reaction
product: 506765
name: deoxyguanylate kinase (dGMP:ATP)
reversible: true
reactant: 506741
product: 506777
kinetic law: 506790
fast: false
notes: GENE_ASSOCIATION: b3648 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.8
reactant: 506753

506765
type: SpeciesReference
stoichiometry: 1.0
species: 574239

506741
type: SpeciesReference
stoichiometry: 1.0
species: 574373

506777
type: SpeciesReference
stoichiometry: 1.0
species: 574588

574588
type: Species
notes: FORMULA: C10H12N5O10P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dGDP

587364
type: LocalParameter
units: 456180
value: 0.0

587363
type: LocalParameter
units: 456180
value: 0.0

587361
type: LocalParameter
units: 456180
value: 1000.0

587360
type: LocalParameter
units: 456180
value: -1000.0

506753
type: SpeciesReference
stoichiometry: 1.0
species: 574591

574591
type: Species
notes: FORMULA: C10H12N5O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dGMP

580359
type: Reaction
kinetic law: 544523
product: 544511
product: 544499
reactant: 544487
notes: GENE_ASSOCIATION: b2022 SUBSYSTEM: Histidine Metabolism EC Number: 4.2.1.19
fast: false
reversible: false
name: imidazoleglycerol-phosphate dehydratase

590663
type: LocalParameter
units: 456180
value: 0.0

590661
type: LocalParameter
units: 456180
value: 0.0

590660
type: LocalParameter
units: 456180
value: 1000.0

590658
type: LocalParameter
units: 456180
value: 0.0

544511
type: SpeciesReference
stoichiometry: 1.0
species: 575228

575228
type: Species
notes: FORMULA: C6H7N2O5P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-(Imidazol-4-yl)-2-oxopropyl phosphate

544499
type: SpeciesReference
stoichiometry: 1.0
species: 575099

544487
type: SpeciesReference
stoichiometry: 1.0
species: 574739

574739
type: Species
notes: FORMULA: C6H9N2O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate

574068
type: Species
notes: FORMULA: C3H4O7P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Phospho-D-glycerate

580082
type: Reaction
product: 531620
reversible: false
reactant: 531608
kinetic law: 531644
reactant: 531584
reactant: 531596
notes: GENE_ASSOCIATION: b3430 SUBSYSTEM: Glycolysis/Gluconeogenesis EC Number: 2.7.7.27
name: glucose-1-phosphate adenylyltransferase
product: 531632
fast: false

531620
type: SpeciesReference
stoichiometry: 1.0
species: 574241

574241
type: Species
notes: FORMULA: C16H23N5O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: ADPglucose

531608
type: SpeciesReference
stoichiometry: 1.0
species: 575090

589523
type: LocalParameter
units: 456180
value: 0.0

589521
type: LocalParameter
units: 456180
value: 0.0

589520
type: LocalParameter
units: 456180
value: 1000.0

589518
type: LocalParameter
units: 456180
value: 0.0

531584
type: SpeciesReference
stoichiometry: 1.0
species: 574373

531596
type: SpeciesReference
stoichiometry: 1.0
species: 574862

531632
type: SpeciesReference
stoichiometry: 1.0
species: 575824

578559
type: Reaction
kinetic law: 464344
reactant: 464331
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Nitric oxide exchange

583097
type: LocalParameter
units: 456180
value: 0.0

583095
type: LocalParameter
units: 456180
value: 0.0

583094
type: LocalParameter
units: 456180
value: 1000.0

583092
type: LocalParameter
units: 456180
value: 0.0

464331
type: SpeciesReference
stoichiometry: 1.0
species: 577227

577227
type: Species
notes: FORMULA: NO CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Nitric oxide

578851
type: Reaction
product: 472793
kinetic law: 472817
reactant: 472756
reactant: 472744
reversible: false
product: 472780
name: 3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:1)
product: 472805
fast: false
notes: GENE_ASSOCIATION: b1095 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 2.3.1.41
reactant: 472768

472793
type: SpeciesReference
stoichiometry: 1.0
species: 574155

584197
type: LocalParameter
units: 456180
value: 0.0

584195
type: LocalParameter
units: 456180
value: 0.0

584194
type: LocalParameter
units: 456180
value: 1000.0

584192
type: LocalParameter
units: 456180
value: 0.0

472756
type: SpeciesReference
stoichiometry: 1.0
species: 575132

575132
type: Species
notes: FORMULA: C27H49N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)

472744
type: SpeciesReference
stoichiometry: 1.0
species: 575090

472780
type: SpeciesReference
stoichiometry: 1.0
species: 574034

472805
type: SpeciesReference
stoichiometry: 1.0
species: 574476

472768
type: SpeciesReference
stoichiometry: 1.0
species: 575357

575357
type: Species
notes: FORMULA: C14H22N2O10PRS CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Malonyl-[acyl-carrier protein]

581798
type: Reaction
product: 623887
product: 623899
fast: false
notes: GENE_ASSOCIATION: b3770 SUBSYSTEM: Valine, Leucine, and Isoleucine Metabolism EC Number: 2.6.1.42
reactant: 623875
name: valine transaminase
reversible: true
kinetic law: 623911
reactant: 623863

623887
type: SpeciesReference
stoichiometry: 1.0
species: 574024

574024
type: Species
notes: FORMULA: C5H7O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Methyl-2-oxobutanoate

623899
type: SpeciesReference
stoichiometry: 1.0
species: 574991

623875
type: SpeciesReference
stoichiometry: 1.0
species: 576439

576439
type: Species
notes: FORMULA: C5H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Valine

596461
type: LocalParameter
units: 456180
value: 0.0

596460
type: LocalParameter
units: 456180
value: 0.0

596458
type: LocalParameter
units: 456180
value: 1000.0

596457
type: LocalParameter
units: 456180
value: -1000.0

623863
type: SpeciesReference
stoichiometry: 1.0
species: 574263

577804
type: Species
notes: FORMULA: C12H10FeO14 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Fe(III)dicitrate

580632
type: Reaction
reversible: false
reactant: 557606
reactant: 557594
product: 557642
fast: false
notes: GENE_ASSOCIATION: b2463 SUBSYSTEM: Anaplerotic Reactions EC Number: 1.1.1.40
kinetic law: 557654
name: malic enzyme (NADP)
product: 557630
product: 557618

557606
type: SpeciesReference
stoichiometry: 1.0
species: 575525

557594
type: SpeciesReference
stoichiometry: 1.0
species: 575354

575354
type: Species
notes: FORMULA: C4H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Malate

557642
type: SpeciesReference
stoichiometry: 1.0
species: 575920

591782
type: LocalParameter
units: 456180
value: 0.0

591781
type: LocalParameter
units: 456180
value: 0.0

591779
type: LocalParameter
units: 456180
value: 1000.0

591778
type: LocalParameter
units: 456180
value: 0.0

557630
type: SpeciesReference
stoichiometry: 1.0
species: 575528

557618
type: SpeciesReference
stoichiometry: 1.0
species: 574476

577431
type: Species
notes: FORMULA: C9H11NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Tyrosine

580241
type: Reaction
reactant: 539154
name: 3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)
reactant: 539130
fast: false
reversible: true
notes: GENE_ASSOCIATION: (b3846 or b2341) SUBSYSTEM: Membrane Lipid Metabolism EC Number: 1.1.1.35
product: 539166
reactant: 539142
kinetic law: 539190
product: 539178

539154
type: SpeciesReference
stoichiometry: 1.0
species: 575522

539130
type: SpeciesReference
stoichiometry: 1.0
species: 574044

574044
type: Species
notes: FORMULA: C27H40N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxohexanoyl-CoA

539166
type: SpeciesReference
stoichiometry: 1.0
species: 573997

573997
type: Species
notes: FORMULA: C27H42N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (S)-3-Hydroxyhexanoyl-CoA

539142
type: SpeciesReference
stoichiometry: 1.0
species: 575090

590206
type: LocalParameter
units: 456180
value: 0.0

590205
type: LocalParameter
units: 456180
value: 0.0

590203
type: LocalParameter
units: 456180
value: 1000.0

590202
type: LocalParameter
units: 456180
value: -1000.0

539178
type: SpeciesReference
stoichiometry: 1.0
species: 575519

574018
type: Species
notes: FORMULA: C9H9O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-(3-hydroxy-phenyl)propionate

580054
type: Reaction
product: 530408
reactant: 530359
name: Glucose dehydrogenase (ubiquinone-8 as acceptor) (periplasm)
kinetic law: 530432
product: 530420
reversible: false
reactant: 530371
fast: false
reactant: 530384
product: 530396
notes: GENE_ASSOCIATION: (b0124 or b0837) SUBSYSTEM: Oxidative Phosphorylation EC Number:

530408
type: SpeciesReference
stoichiometry: 1.0
species: 577857

530359
type: SpeciesReference
stoichiometry: 1.0
species: 575923

589402
type: LocalParameter
units: 456180
value: 0.0

589400
type: LocalParameter
units: 456180
value: 0.0

589399
type: LocalParameter
units: 456180
value: 1000.0

589397
type: LocalParameter
units: 456180
value: 0.0

530420
type: SpeciesReference
stoichiometry: 1.0
species: 577887

530371
type: SpeciesReference
stoichiometry: 1.0
species: 577856

577856
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Glucose

530384
type: SpeciesReference
stoichiometry: 1.0
species: 577890

530396
type: SpeciesReference
stoichiometry: 1.0
species: 575926

580424
type: Reaction
kinetic law: 547674
product: 547662
reactant: 547650
notes: GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-alanyl-D-glutamate transport via diffusion (extracellular to periplasm)

590938
type: LocalParameter
units: 456180
value: 0.0

590936
type: LocalParameter
units: 456180
value: 0.0

590935
type: LocalParameter
units: 456180
value: 1000.0

590933
type: LocalParameter
units: 456180
value: -1000.0

547662
type: SpeciesReference
stoichiometry: 1.0
species: 577631

577631
type: Species
notes: FORMULA: C8H13N2O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-alanine-D-glutamate

547650
type: SpeciesReference
stoichiometry: 1.0
species: 576550

576550
type: Species
notes: FORMULA: C8H13N2O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-alanine-D-glutamate

575752
type: Species
notes: FORMULA: C42H81O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)

577365
type: Species
notes: FORMULA: C4H4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Succinate

580571
type: Reaction
product: 555072
reversible: false
reactant: 555023
fast: false
notes: GENE_ASSOCIATION: (b4034 and b4033 and b4032 and b4035) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 555036
product: 555085
name: maltopentaose transport via ABC system (periplasm)
product: 555097
kinetic law: 555109
product: 555060
reactant: 555048

555072
type: SpeciesReference
stoichiometry: 1.0
species: 575090

555023
type: SpeciesReference
stoichiometry: 1.0
species: 574373

555036
type: SpeciesReference
stoichiometry: 1.0
species: 575099

555085
type: SpeciesReference
stoichiometry: 1.0
species: 575378

555097
type: SpeciesReference
stoichiometry: 1.0
species: 575785

591538
type: LocalParameter
units: 456180
value: 0.0

591537
type: LocalParameter
units: 456180
value: 0.0

591535
type: LocalParameter
units: 456180
value: 1000.0

591534
type: LocalParameter
units: 456180
value: 0.0

555060
type: SpeciesReference
stoichiometry: 1.0
species: 574239

555048
type: SpeciesReference
stoichiometry: 1.0
species: 577940

577940
type: Species
notes: FORMULA: C30H52O26 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Maltopentaose

580602
type: Reaction
kinetic law: 556402
product: 556390
product: 556378
reactant: 556366
notes: GENE_ASSOCIATION: b0334 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.2.1.79
fast: false
reversible: false
name: 2-methylcitrate dehydratase

591665
type: LocalParameter
units: 456180
value: 0.0

591663
type: LocalParameter
units: 456180
value: 0.0

591662
type: LocalParameter
units: 456180
value: 1000.0

591660
type: LocalParameter
units: 456180
value: 0.0

556390
type: SpeciesReference
stoichiometry: 1.0
species: 575099

556378
type: SpeciesReference
stoichiometry: 1.0
species: 573906

573906
type: Species
notes: FORMULA: C7H5O6 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cis-2-Methylaconitate

556366
type: SpeciesReference
stoichiometry: 1.0
species: 573908

573908
type: Species
notes: FORMULA: C7H7O7 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Methylcitrate

578441
type: Reaction
kinetic law: 462437
reactant: 462424
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Glucuronate 1-phosphate exchange

582691
type: LocalParameter
units: 456180
value: 0.0

582690
type: LocalParameter
units: 456180
value: 0.0

582689
type: LocalParameter
units: 456180
value: 1000.0

582688
type: LocalParameter
units: 456180
value: 0.0

462424
type: SpeciesReference
stoichiometry: 1.0
species: 576990

576990
type: Species
notes: FORMULA: C6H8O10P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glucuronate 1-phosphate

575630
type: Species
notes: FORMULA: C2O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Oxalate

579943
type: Reaction
reactant: 524321
notes: GENE_ASSOCIATION: b3370 SUBSYSTEM: Transport, Inner Membrane EC Number:
name: Fructoselysine transport via proton symport (periplasm)
kinetic law: 524357
product: 524333
product: 524345
fast: false
reactant: 524308
reversible: false

524321
type: SpeciesReference
stoichiometry: 1.0
species: 577887

588841
type: LocalParameter
units: 456180
value: 0.0

588839
type: LocalParameter
units: 456180
value: 0.0

588838
type: LocalParameter
units: 456180
value: 1000.0

588836
type: LocalParameter
units: 456180
value: 0.0

524333
type: SpeciesReference
stoichiometry: 1.0
species: 574847

574847
type: Species
notes: FORMULA: C12H25N2O7 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: fructoselysine

524345
type: SpeciesReference
stoichiometry: 1.0
species: 575090

524308
type: SpeciesReference
stoichiometry: 1.0
species: 577820

576481
type: Species
notes: FORMULA: C3H8O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: (R)-Propane-1,2-diol

580601
type: Reaction
kinetic law: 556354
product: 556342
reactant: 556330
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-mannose transport via diffusion (extracellular to periplasm)

591659
type: LocalParameter
units: 456180
value: 0.0

591658
type: LocalParameter
units: 456180
value: 0.0

591656
type: LocalParameter
units: 456180
value: 1000.0

591655
type: LocalParameter
units: 456180
value: -1000.0

556342
type: SpeciesReference
stoichiometry: 1.0
species: 577944

577944
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Mannose

556330
type: SpeciesReference
stoichiometry: 1.0
species: 577158

579167
type: Reaction
reactant: 487563
fast: false
product: 487612
kinetic law: 487624
notes: GENE_ASSOCIATION: b0968 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.6.1.7
name: acylphosphatase (C12:0)
reactant: 487575
reversible: false
product: 487600
product: 487587

487563
type: SpeciesReference
stoichiometry: 1.0
species: 574586

487612
type: SpeciesReference
stoichiometry: 1.0
species: 575785

585739
type: LocalParameter
units: 456180
value: 0.0

585738
type: LocalParameter
units: 456180
value: 0.0

585736
type: LocalParameter
units: 456180
value: 1000.0

585735
type: LocalParameter
units: 456180
value: 0.0

487575
type: SpeciesReference
stoichiometry: 1.0
species: 575099

487600
type: SpeciesReference
stoichiometry: 2.0
species: 575090

487587
type: SpeciesReference
stoichiometry: 1.0
species: 574578

574578
type: Species
notes: FORMULA: C12H23O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dodecanoate (n-C12:0)

579253
type: Reaction
notes: GENE_ASSOCIATION: (b3503 and b1064) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
product: 491928
kinetic law: 491964
reactant: 491904
product: 491952
reactant: 491916
fast: false
name: arsenate reductase
reversible: false
product: 491940

491928
type: SpeciesReference
stoichiometry: 1.0
species: 574359

574359
type: Species
notes: FORMULA: AsO3 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: arsenite

586117
type: LocalParameter
units: 456180
value: 0.0

586115
type: LocalParameter
units: 456180
value: 0.0

586114
type: LocalParameter
units: 456180
value: 1000.0

586112
type: LocalParameter
units: 456180
value: 0.0

491904
type: SpeciesReference
stoichiometry: 1.0
species: 574361

574361
type: Species
notes: FORMULA: AsO4 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: arsenate

491952
type: SpeciesReference
stoichiometry: 1.0
species: 575099

491916
type: SpeciesReference
stoichiometry: 2.0
species: 575078

575078
type: Species
notes: FORMULA: C10H16N3O6S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Reduced glutathione

491940
type: SpeciesReference
stoichiometry: 1.0
species: 575075

575075
type: Species
notes: FORMULA: C20H30N6O12S2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Oxidized glutathione

578075
type: Species
notes: FORMULA: C34H30FeN4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Protoheme

574221
type: Species
notes: FORMULA: C7H14N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Acetyl-L-ornithine

579182
type: Reaction
name: aerobactin reductase
fast: false
product: 488407
product: 488395
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 488358
kinetic law: 488419
product: 488383
product: 488370
reversible: false
reactant: 488346

488407
type: SpeciesReference
stoichiometry: 2.0
species: 575090

488395
type: SpeciesReference
stoichiometry: 1.0
species: 574823

488358
type: SpeciesReference
stoichiometry: 1.0
species: 574826

585800
type: LocalParameter
units: 456180
value: 0.0

585798
type: LocalParameter
units: 456180
value: 0.0

585797
type: LocalParameter
units: 456180
value: 1000.0

585795
type: LocalParameter
units: 456180
value: 0.0

488383
type: SpeciesReference
stoichiometry: 2.0
species: 574781

574781
type: Species
notes: FORMULA: Fe CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Fe2+

488370
type: SpeciesReference
stoichiometry: 2.0
species: 574343

488346
type: SpeciesReference
stoichiometry: 2.0
species: 574345

574345
type: Species
notes: FORMULA: C22H33FeN4O13 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Aerobactin

577041
type: Species
notes: FORMULA: H CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: H+

581156
type: Reaction
notes: GENE_ASSOCIATION: (b3726 and b3725 and b3727 and b3728) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
reactant: 594413
reactant: 594486
reactant: 594376
product: 594534
product: 594618
name: phosphate transport via ABC system (uptake, periplasm)
product: 594570
kinetic law: 594666
fast: false
reversible: false

594413
type: SpeciesReference
stoichiometry: 1.0
species: 575099

594486
type: SpeciesReference
stoichiometry: 1.0
species: 578076

594376
type: SpeciesReference
stoichiometry: 1.0
species: 574373

594534
type: SpeciesReference
stoichiometry: 1.0
species: 574239

594618
type: SpeciesReference
stoichiometry: 2.0
species: 575785

594570
type: SpeciesReference
stoichiometry: 1.0
species: 575090

594087
type: LocalParameter
units: 456180
value: 0.0

594085
type: LocalParameter
units: 456180
value: 0.0

594084
type: LocalParameter
units: 456180
value: 1000.0

594082
type: LocalParameter
units: 456180
value: 0.0

573802
type: Species
notes: FORMULA: C3H9N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2,3-diaminopropionate

579510
type: Reaction
fast: false
product: 504711
product: 504687
reactant: 504675
reversible: false
name: diacylglycerol kinase (n-C18:0)
reactant: 504663
notes: GENE_ASSOCIATION: b4042 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.7.1.107
kinetic law: 504724
product: 504699

504711
type: SpeciesReference
stoichiometry: 1.0
species: 575660

504687
type: SpeciesReference
stoichiometry: 1.0
species: 574239

504675
type: SpeciesReference
stoichiometry: 1.0
species: 574373

504663
type: SpeciesReference
stoichiometry: 1.0
species: 573770

573770
type: Species
notes: FORMULA: C39H76O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)

587177
type: LocalParameter
units: 456180
value: 0.0

587176
type: LocalParameter
units: 456180
value: 0.0

587174
type: LocalParameter
units: 456180
value: 1000.0

587173
type: LocalParameter
units: 456180
value: 0.0

504699
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579986
type: Reaction
product: 526733
reversible: false
reactant: 526697
product: 526769
kinetic law: 526782
fast: false
product: 526745
name: sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm)
reactant: 526721
product: 526757
notes: GENE_ASSOCIATION: (b3452 and b3453 and b3450 and b3451) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 526709

526733
type: SpeciesReference
stoichiometry: 1.0
species: 574239

526697
type: SpeciesReference
stoichiometry: 1.0
species: 574373

526769
type: SpeciesReference
stoichiometry: 1.0
species: 575785

589066
type: LocalParameter
units: 456180
value: 0.0

589065
type: LocalParameter
units: 456180
value: 0.0

589063
type: LocalParameter
units: 456180
value: 1000.0

589062
type: LocalParameter
units: 456180
value: 0.0

526745
type: SpeciesReference
stoichiometry: 1.0
species: 574877

574877
type: Species
notes: FORMULA: C9H18O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: sn-Glycero-3-phospho-1-inositol

526721
type: SpeciesReference
stoichiometry: 1.0
species: 577833

577833
type: Species
notes: FORMULA: C9H18O11P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: sn-Glycero-3-phospho-1-inositol

526757
type: SpeciesReference
stoichiometry: 1.0
species: 575090

526709
type: SpeciesReference
stoichiometry: 1.0
species: 575099

580246
type: Reaction
reactant: 539431
reactant: 539443
reversible: true
name: 3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)
product: 539455
fast: false
reactant: 539419
product: 539467
kinetic law: 539479
notes: GENE_ASSOCIATION: (b3846 or b2341) SUBSYSTEM: Membrane Lipid Metabolism EC Number: 1.1.1.35

539431
type: SpeciesReference
stoichiometry: 1.0
species: 575090

539443
type: SpeciesReference
stoichiometry: 1.0
species: 575522

539455
type: SpeciesReference
stoichiometry: 1.0
species: 574020

574020
type: Species
notes: FORMULA: C35H58N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (S)-3-Hydroxytetradecanoyl-CoA

539419
type: SpeciesReference
stoichiometry: 1.0
species: 574064

574064
type: Species
notes: FORMULA: C35H56N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxotetradecanoyl-CoA

539467
type: SpeciesReference
stoichiometry: 1.0
species: 575519

590228
type: LocalParameter
units: 456180
value: 0.0

590227
type: LocalParameter
units: 456180
value: 0.0

590225
type: LocalParameter
units: 456180
value: 1000.0

590224
type: LocalParameter
units: 456180
value: -1000.0

579166
type: Reaction
product: 487527
fast: false
name: acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:1)
reversible: false
kinetic law: 487551
notes: GENE_ASSOCIATION: b3059 SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
reactant: 487491
product: 487539
product: 487515
reactant: 487503

487527
type: SpeciesReference
stoichiometry: 1.0
species: 575090

585734
type: LocalParameter
units: 456180
value: 0.0

585732
type: LocalParameter
units: 456180
value: 0.0

585731
type: LocalParameter
units: 456180
value: 1000.0

585729
type: LocalParameter
units: 456180
value: 0.0

487491
type: SpeciesReference
stoichiometry: 1.0
species: 575030

487539
type: SpeciesReference
stoichiometry: 1.0
species: 575785

487515
type: SpeciesReference
stoichiometry: 1.0
species: 573792

573792
type: Species
notes: FORMULA: C21H39O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-octadec-11-enoyl-sn-glycerol 3-phosphate

487503
type: SpeciesReference
stoichiometry: 1.0
species: 575588

577911
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: myo-Inositol

581069
type: Reaction
product: 581317
name: phosphoethanolamine transferase (c-C16:1)
kinetic law: 581524
fast: false
reactant: 581293
notes: GENE_ASSOCIATION: b3546 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
reversible: false
product: 581329
reactant: 581305

581317
type: SpeciesReference
stoichiometry: 1.0
species: 577497

577497
type: Species
notes: FORMULA: C35H64O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)

593768
type: LocalParameter
units: 456180
value: 0.0

593766
type: LocalParameter
units: 456180
value: 0.0

593765
type: LocalParameter
units: 456180
value: 1000.0

593763
type: LocalParameter
units: 456180
value: 0.0

581293
type: SpeciesReference
stoichiometry: 1.0
species: 577925

581329
type: SpeciesReference
stoichiometry: 1.0
species: 577790

577790
type: Species
notes: FORMULA: C112H202N3O42P3 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphoethanolamine KDO(2)-lipid (A)

581305
type: SpeciesReference
stoichiometry: 1.0
species: 578043

578043
type: Species
notes: FORMULA: C37H70N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)

578745
type: Reaction
product: 468018
reversible: false
fast: false
name: 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0)
product: 468030
notes: GENE_ASSOCIATION: b2836 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.3.1.40
reactant: 467981
product: 468042
reactant: 468006
kinetic law: 468054
reactant: 467994

468018
type: SpeciesReference
stoichiometry: 1.0
species: 574295

468030
type: SpeciesReference
stoichiometry: 1.0
species: 575690

575690
type: Species
notes: FORMULA: C29H58N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylethanolamine (didodecanoyl, n-C12:0)

467981
type: SpeciesReference
stoichiometry: 1.0
species: 573832

573832
type: Species
notes: FORMULA: C17H36NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)

468042
type: SpeciesReference
stoichiometry: 1.0
species: 575824

468006
type: SpeciesReference
stoichiometry: 1.0
species: 574578

583768
type: LocalParameter
units: 456180
value: 0.0

583766
type: LocalParameter
units: 456180
value: 0.0

583765
type: LocalParameter
units: 456180
value: 1000.0

583763
type: LocalParameter
units: 456180
value: 0.0

467994
type: SpeciesReference
stoichiometry: 1.0
species: 574373

580332
type: Reaction
kinetic law: 543286
product: 543274
reactant: 543261
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: true
name: Hypoxanthine transport (periplasm)

590558
type: LocalParameter
units: 456180
value: 0.0

590557
type: LocalParameter
units: 456180
value: 0.0

590555
type: LocalParameter
units: 456180
value: 1000.0

590554
type: LocalParameter
units: 456180
value: -1000.0

543274
type: SpeciesReference
stoichiometry: 1.0
species: 575198

575198
type: Species
notes: FORMULA: C5H4N4O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hypoxanthine

543261
type: SpeciesReference
stoichiometry: 1.0
species: 577904

577904
type: Species
notes: FORMULA: C5H4N4O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Hypoxanthine

578878
type: Reaction
kinetic law: 474010
product: 473998
reactant: 473986
notes: GENE_ASSOCIATION: (b3197 or b2708) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 5.3.1.13
fast: false
reversible: true
name: arabinose-5-phosphate isomerase

584307
type: LocalParameter
units: 456180
value: 0.0

584305
type: LocalParameter
units: 456180
value: 0.0

584304
type: LocalParameter
units: 456180
value: 1000.0

584302
type: LocalParameter
units: 456180
value: -1000.0

473998
type: SpeciesReference
stoichiometry: 1.0
species: 574335

473986
type: SpeciesReference
stoichiometry: 1.0
species: 575977

579899
type: Reaction
fast: false
product: 522136
kinetic law: 522148
name: enterochelin transport (secretion)
reactant: 522112
product: 522124
notes: GENE_ASSOCIATION: b0591 SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
reactant: 522100

522136
type: SpeciesReference
stoichiometry: 1.0
species: 577792

588659
type: LocalParameter
units: 456180
value: 0.0

588658
type: LocalParameter
units: 456180
value: 0.0

588656
type: LocalParameter
units: 456180
value: 1000.0

588655
type: LocalParameter
units: 456180
value: 0.0

522112
type: SpeciesReference
stoichiometry: 1.0
species: 577887

522124
type: SpeciesReference
stoichiometry: 1.0
species: 575090

522100
type: SpeciesReference
stoichiometry: 1.0
species: 574742

574742
type: Species
notes: FORMULA: C30H27N3O15 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Enterochelin

577596
type: Species
notes: FORMULA: C22H42O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)

575321
type: Species
notes: FORMULA: C114H202N2O39P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cold adapted KDO(2)-lipid (A)

578313
type: Reaction
kinetic law: 460381
reactant: 460369
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Chloramphenicol exchange

582270
type: LocalParameter
units: 456180
value: 0.0

582268
type: LocalParameter
units: 456180
value: 0.0

582267
type: LocalParameter
units: 456180
value: 1000.0

582265
type: LocalParameter
units: 456180
value: 0.0

460369
type: SpeciesReference
stoichiometry: 1.0
species: 576703

580245
type: Reaction
fast: false
reversible: true
name: 3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)
reactant: 539359
product: 539395
notes: GENE_ASSOCIATION: (b3846 or b2341) SUBSYSTEM: Membrane Lipid Metabolism EC Number: 1.1.1.35
product: 539383
reactant: 539371
reactant: 539347
kinetic law: 539407

539359
type: SpeciesReference
stoichiometry: 1.0
species: 575090

539395
type: SpeciesReference
stoichiometry: 1.0
species: 575519

539383
type: SpeciesReference
stoichiometry: 1.0
species: 573991

573991
type: Species
notes: FORMULA: C33H54N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (S)-3-Hydroxydodecanoyl-CoA

539371
type: SpeciesReference
stoichiometry: 1.0
species: 575522

539347
type: SpeciesReference
stoichiometry: 1.0
species: 574038

574038
type: Species
notes: FORMULA: C33H52N7O18P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxododecanoyl-CoA

590223
type: LocalParameter
units: 456180
value: 0.0

590221
type: LocalParameter
units: 456180
value: 0.0

590220
type: LocalParameter
units: 456180
value: 1000.0

590218
type: LocalParameter
units: 456180
value: -1000.0

577625
type: Species
notes: FORMULA: C4H9NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 4-Aminobutanoate

580302
type: Reaction
reactant: 542041
notes: GENE_ASSOCIATION: b0142 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.7.6.3
kinetic law: 542089
fast: false
product: 542053
reactant: 542029
product: 542077
product: 542065
name: 6-hydroxymethyl-dihydropterin pyrophosphokinase
reversible: false

542041
type: SpeciesReference
stoichiometry: 1.0
species: 574373

590448
type: LocalParameter
units: 456180
value: 0.0

590447
type: LocalParameter
units: 456180
value: 0.0

590445
type: LocalParameter
units: 456180
value: 1000.0

590444
type: LocalParameter
units: 456180
value: 0.0

542053
type: SpeciesReference
stoichiometry: 1.0
species: 574147

574147
type: Species
notes: FORMULA: C7H8N5O8P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 6-hydroxymethyl-dihydropterin pyrophosphate

542029
type: SpeciesReference
stoichiometry: 1.0
species: 574145

574145
type: Species
notes: FORMULA: C7H9N5O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 6-hydroxymethyl dihydropterin

542077
type: SpeciesReference
stoichiometry: 1.0
species: 575090

542065
type: SpeciesReference
stoichiometry: 1.0
species: 574295

579391
type: Reaction
kinetic law: 498718
name: Lipid A core kinase (periplasm)
reactant: 498682
notes: GENE_ASSOCIATION: b2174 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
product: 498694
reactant: 498670
reversible: false
fast: false
product: 498706

586689
type: LocalParameter
units: 456180
value: 0.0

586687
type: LocalParameter
units: 456180
value: 0.0

586686
type: LocalParameter
units: 456180
value: 1000.0

586684
type: LocalParameter
units: 456180
value: 0.0

498682
type: SpeciesReference
stoichiometry: 1.0
species: 578163

498694
type: SpeciesReference
stoichiometry: 1.0
species: 577728

577728
type: Species
notes: FORMULA: C176H303N2O103P5 CHARGE: -12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: core oligosaccharide lipid A diphosphate

498670
type: SpeciesReference
stoichiometry: 1.0
species: 577727

577727
type: Species
notes: FORMULA: C176H303N2O100P4 CHARGE: -11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: core oligosaccharide lipid A

498706
type: SpeciesReference
stoichiometry: 1.0
species: 578165

580812
type: Reaction
kinetic law: 565249
product: 565237
reactant: 565225
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: ammonia transport via diffusion (extracellular to periplasm)

592596
type: LocalParameter
units: 456180
value: 0.0

592595
type: LocalParameter
units: 456180
value: 0.0

592592
type: LocalParameter
units: 456180
value: 1000.0

592591
type: LocalParameter
units: 456180
value: -1000.0

565237
type: SpeciesReference
stoichiometry: 1.0
species: 577997

565225
type: SpeciesReference
stoichiometry: 1.0
species: 577218

581315
type: Reaction
fast: false
product: 603304
kinetic law: 603328
reactant: 603280
name: phosphoserine transaminase
product: 603316
reactant: 603292
notes: GENE_ASSOCIATION: b0907 SUBSYSTEM: Glycine and Serine Metabolism EC Number: 2.6.1.52
reversible: false

603304
type: SpeciesReference
stoichiometry: 1.0
species: 574263

594681
type: LocalParameter
units: 456180
value: 0.0

594679
type: LocalParameter
units: 456180
value: 0.0

594678
type: LocalParameter
units: 456180
value: 1000.0

594676
type: LocalParameter
units: 456180
value: 0.0

603280
type: SpeciesReference
stoichiometry: 1.0
species: 574070

574070
type: Species
notes: FORMULA: C3H2O7P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Phosphohydroxypyruvate

603316
type: SpeciesReference
stoichiometry: 1.0
species: 575899

603292
type: SpeciesReference
stoichiometry: 1.0
species: 574991

581244
type: Reaction
product: 600176
reactant: 600164
product: 600200
name: porphobilinogen synthase
product: 600188
reversible: false
fast: false
kinetic law: 600213
notes: GENE_ASSOCIATION: b0369 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.2.1.24

600176
type: SpeciesReference
stoichiometry: 1.0
species: 575090

600164
type: SpeciesReference
stoichiometry: 2.0
species: 574120

574120
type: Species
notes: FORMULA: C5H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Amino-4-oxopentanoate

600200
type: SpeciesReference
stoichiometry: 1.0
species: 575812

575812
type: Species
notes: FORMULA: C10H13N2O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Porphobilinogen

600188
type: SpeciesReference
stoichiometry: 2.0
species: 575099

594417
type: LocalParameter
units: 456180
value: 0.0

594415
type: LocalParameter
units: 456180
value: 0.0

594414
type: LocalParameter
units: 456180
value: 1000.0

594412
type: LocalParameter
units: 456180
value: 0.0

578312
type: Reaction
kinetic law: 460356
reactant: 460344
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Chloride exchange

582264
type: LocalParameter
units: 456180
value: 0.0

582263
type: LocalParameter
units: 456180
value: 0.0

582261
type: LocalParameter
units: 456180
value: 1000.0

582260
type: LocalParameter
units: 456180
value: -1000.0

460344
type: SpeciesReference
stoichiometry: 1.0
species: 576700

576700
type: Species
notes: FORMULA: Cl CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Chloride

580756
type: Reaction
notes: GENE_ASSOCIATION: b0529 SUBSYSTEM: Folate Metabolism EC Number: 3.5.4.9
name: methenyltetrahydrofolate cyclohydrolase
reactant: 562768
reactant: 562755
product: 562781
kinetic law: 562807
product: 562794
reversible: true
fast: false

562768
type: SpeciesReference
stoichiometry: 1.0
species: 575420

575420
type: Species
notes: FORMULA: C20H20N7O6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5,10-Methenyltetrahydrofolate

562755
type: SpeciesReference
stoichiometry: 1.0
species: 575099

562781
type: SpeciesReference
stoichiometry: 1.0
species: 573758

573758
type: Species
notes: FORMULA: C20H21N7O7 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 10-Formyltetrahydrofolate

592314
type: LocalParameter
units: 456180
value: 0.0

592312
type: LocalParameter
units: 456180
value: 0.0

592311
type: LocalParameter
units: 456180
value: 1000.0

592308
type: LocalParameter
units: 456180
value: -1000.0

562794
type: SpeciesReference
stoichiometry: 1.0
species: 575090

580215
type: Reaction
fast: false
notes: GENE_ASSOCIATION: b2883 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.5.4.3
reversible: false
product: 538391
reactant: 538367
name: guanine deaminase
kinetic law: 538403
reactant: 538355
product: 538379
reactant: 538343

538391
type: SpeciesReference
stoichiometry: 1.0
species: 576448

538367
type: SpeciesReference
stoichiometry: 1.0
species: 575099

590081
type: LocalParameter
units: 456180
value: 0.0

590078
type: LocalParameter
units: 456180
value: 0.0

590077
type: LocalParameter
units: 456180
value: 1000.0

590076
type: LocalParameter
units: 456180
value: 0.0

538355
type: SpeciesReference
stoichiometry: 1.0
species: 575090

538379
type: SpeciesReference
stoichiometry: 1.0
species: 575534

538343
type: SpeciesReference
stoichiometry: 1.0
species: 575087

579947
type: Reaction
kinetic law: 524490
product: 524478
reactant: 524466
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-fructuronate transport via diffusion (extracellular)

588857
type: LocalParameter
units: 456180
value: 0.0

588856
type: LocalParameter
units: 456180
value: 0.0

588854
type: LocalParameter
units: 456180
value: 1000.0

588853
type: LocalParameter
units: 456180
value: -1000.0

524478
type: SpeciesReference
stoichiometry: 1.0
species: 577821

524466
type: SpeciesReference
stoichiometry: 1.0
species: 576909

576909
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Fructuronate

579067
type: Reaction
reactant: 482726
product: 482738
notes: GENE_ASSOCIATION: b4006 SUBSYSTEM: Purine and Pyrimidine Biosynthesis EC Number: 2.1.2.3
fast: false
product: 482750
kinetic law: 482762
name: phosphoribosylaminoimidazolecarboxamide formyltransferase
reversible: true
reactant: 482714

482726
type: SpeciesReference
stoichiometry: 1.0
species: 574259

574259
type: Species
notes: FORMULA: C9H13N4O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide

482738
type: SpeciesReference
stoichiometry: 1.0
species: 574838

574838
type: Species
notes: FORMULA: C10H13N4O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

482750
type: SpeciesReference
stoichiometry: 1.0
species: 576169

585327
type: LocalParameter
units: 456180
value: 0.0

585325
type: LocalParameter
units: 456180
value: 0.0

585324
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units: 456180
value: 1000.0

585322
type: LocalParameter
units: 456180
value: -1000.0

482714
type: SpeciesReference
stoichiometry: 1.0
species: 573758

576349
type: Species
notes: FORMULA: C17H22N3O18P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: UDP-N-acetyl-D-mannosaminouronate

577545
type: Species
notes: FORMULA: C20H38O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)

581228
type: Reaction
kinetic law: 599534
product: 599521
reactant: 599509
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Pantothenate transport via diffusion (extracellular to periplasm)

594356
type: LocalParameter
units: 456180
value: 0.0

594355
type: LocalParameter
units: 456180
value: 0.0

594353
type: LocalParameter
units: 456180
value: 1000.0

594352
type: LocalParameter
units: 456180
value: -1000.0

599521
type: SpeciesReference
stoichiometry: 1.0
species: 578079

578079
type: Species
notes: FORMULA: C9H16NO5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (R)-Pantothenate

599509
type: SpeciesReference
stoichiometry: 1.0
species: 577278

579311
type: Reaction
name: cadmium (Cd+2) transport out via proton antiport (periplasm)
fast: false
notes: GENE_ASSOCIATION: (b3915 or b0752) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
kinetic law: 495129
reactant: 495081
reversible: false
product: 495117
product: 495105
reactant: 495093

586359
type: LocalParameter
units: 456180
value: 0.0

586357
type: LocalParameter
units: 456180
value: 0.0

586356
type: LocalParameter
units: 456180
value: 1000.0

586354
type: LocalParameter
units: 456180
value: 0.0

495081
type: SpeciesReference
stoichiometry: 1.0
species: 574427

495117
type: SpeciesReference
stoichiometry: 1.0
species: 577701

495105
type: SpeciesReference
stoichiometry: 1.0
species: 575090

495093
type: SpeciesReference
stoichiometry: 1.0
species: 577887

580128
type: Reaction
kinetic law: 534183
reactant: 534123
product: 534171
fast: false
reversible: false
product: 534159
reactant: 534135
notes: GENE_ASSOCIATION: b3124 SUBSYSTEM: Glycine and Serine Metabolism EC Number: 2.7.1.31
product: 534147
name: glycerate kinase

589732
type: LocalParameter
units: 456180
value: 0.0

589730
type: LocalParameter
units: 456180
value: 0.0

589729
type: LocalParameter
units: 456180
value: 1000.0

589727
type: LocalParameter
units: 456180
value: 0.0

534123
type: SpeciesReference
stoichiometry: 1.0
species: 574373

534171
type: SpeciesReference
stoichiometry: 1.0
species: 575090

534159
type: SpeciesReference
stoichiometry: 1.0
species: 574239

534135
type: SpeciesReference
stoichiometry: 1.0
species: 575024

534147
type: SpeciesReference
stoichiometry: 1.0
species: 573936

573936
type: Species
notes: FORMULA: C3H4O7P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Glycerate 2-phosphate

578953
type: Reaction
kinetic law: 477532
product: 477520
reactant: 477508
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: false
name: N-acetylmuramate transport via diffusion (extracellular to periplasm)

584615
type: LocalParameter
units: 456180
value: 0.0

584613
type: LocalParameter
units: 456180
value: 0.0

584612
type: LocalParameter
units: 456180
value: 1000.0

584610
type: LocalParameter
units: 456180
value: 0.0

477520
type: SpeciesReference
stoichiometry: 1.0
species: 577649

577649
type: Species
notes: FORMULA: C11H18NO8 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N-Acetylmuramate

477508
type: SpeciesReference
stoichiometry: 1.0
species: 576586

576586
type: Species
notes: FORMULA: C11H18NO8 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: N-Acetylmuramate

576304
type: Species
notes: FORMULA: C14H28O5P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Tetradecanoyl-phosphate (n-C14:0)

576562
type: Species
notes: FORMULA: C2H3O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Acetate

574110
type: Species
notes: FORMULA: C9H15NO8P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-4'-Phosphopantothenate

578866
type: Reaction
fast: false
kinetic law: 473516
reactant: 473468
reactant: 473480
name: tetrapeptide L,D-carboxypeptidase (periplasm)
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Recycling EC Number:
product: 473504
product: 473492
reversible: false

584257
type: LocalParameter
units: 456180
value: 0.0

584256
type: LocalParameter
units: 456180
value: 0.0

584254
type: LocalParameter
units: 456180
value: 1000.0

584253
type: LocalParameter
units: 456180
value: 0.0

473468
type: SpeciesReference
stoichiometry: 1.0
species: 577634

577634
type: Species
notes: FORMULA: C18H30N5O9 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine

473480
type: SpeciesReference
stoichiometry: 1.0
species: 577890

473504
type: SpeciesReference
stoichiometry: 1.0
species: 577664

473492
type: SpeciesReference
stoichiometry: 1.0
species: 577632

577632
type: Species
notes: FORMULA: C15H25N4O8 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate

577620
type: Species
notes: FORMULA: C3H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 3-Hydroxypropanoate

575552
type: Species
notes: FORMULA: NO3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nitrate

578156
type: Species
notes: FORMULA: C8H12NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Tyramine

578520
type: Reaction
kinetic law: 463716
reactant: 463704
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Maltopentaose exchange

582957
type: LocalParameter
units: 456180
value: 0.0

582955
type: LocalParameter
units: 456180
value: 0.0

582954
type: LocalParameter
units: 456180
value: 1000.0

582952
type: LocalParameter
units: 456180
value: 0.0

463704
type: SpeciesReference
stoichiometry: 1.0
species: 577149

577149
type: Species
notes: FORMULA: C30H52O26 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Maltopentaose

574277
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Allose

576912
type: Species
notes: FORMULA: C6H12O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Fucose

581129
type: Reaction
product: 591279
reversible: false
reactant: 591243
fast: false
kinetic law: 591375
product: 591327
notes: GENE_ASSOCIATION: (b1278 or b0418) SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.27
name: phosphatidylglycerol phosphate phosphatase (n-C18:1)
reactant: 591195

591279
type: SpeciesReference
stoichiometry: 1.0
species: 575734

575734
type: Species
notes: FORMULA: C42H78O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)

591243
type: SpeciesReference
stoichiometry: 1.0
species: 575755

575755
type: Species
notes: FORMULA: C42H77O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)

593988
type: LocalParameter
units: 456180
value: 0.0

593986
type: LocalParameter
units: 456180
value: 0.0

593985
type: LocalParameter
units: 456180
value: 1000.0

593983
type: LocalParameter
units: 456180
value: 0.0

591327
type: SpeciesReference
stoichiometry: 1.0
species: 575785

591195
type: SpeciesReference
stoichiometry: 1.0
species: 575099

577299
type: Species
notes: FORMULA: C12H25N2O7 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: psicoselysine

578433
type: Reaction
kinetic law: 462314
reactant: 462302
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: GDP exchange

582671
type: LocalParameter
units: 456180
value: 0.0

582670
type: LocalParameter
units: 456180
value: 0.0

582669
type: LocalParameter
units: 456180
value: 1000.0

582668
type: LocalParameter
units: 456180
value: 0.0

462302
type: SpeciesReference
stoichiometry: 1.0
species: 576975

576975
type: Species
notes: FORMULA: C10H12N5O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: GDP

580877
type: Reaction
reactant: 568004
product: 568028
reversible: false
notes: GENE_ASSOCIATION: (b0480 or b4055) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.3.5
kinetic law: 568052
name: 5'-nucleotidase (CMP)
fast: false
product: 568040
reactant: 568016

568004
type: SpeciesReference
stoichiometry: 1.0
species: 577722

577722
type: Species
notes: FORMULA: C9H12N3O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: CMP

568028
type: SpeciesReference
stoichiometry: 1.0
species: 577748

577748
type: Species
notes: FORMULA: C9H13N3O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cytidine

592908
type: LocalParameter
units: 456180
value: 0.0

592905
type: LocalParameter
units: 456180
value: 0.0

592904
type: LocalParameter
units: 456180
value: 1000.0

592901
type: LocalParameter
units: 456180
value: 0.0

568040
type: SpeciesReference
stoichiometry: 1.0
species: 578076

568016
type: SpeciesReference
stoichiometry: 1.0
species: 577890

580010
type: Reaction
notes: GENE_ASSOCIATION: (b2045 or b0757) SUBSYSTEM: Alternate Carbon Metabolism EC Number: 2.7.1.6
name: galactokinase
reversible: true
reactant: 528065
fast: false
reactant: 528052
product: 528077
kinetic law: 528113
product: 528089
product: 528101

528065
type: SpeciesReference
stoichiometry: 1.0
species: 574889

528052
type: SpeciesReference
stoichiometry: 1.0
species: 574373

528077
type: SpeciesReference
stoichiometry: 1.0
species: 574239

589198
type: LocalParameter
units: 456180
value: 0.0

589197
type: LocalParameter
units: 456180
value: 0.0

589195
type: LocalParameter
units: 456180
value: 1000.0

589194
type: LocalParameter
units: 456180
value: -1000.0

528089
type: SpeciesReference
stoichiometry: 1.0
species: 574892

574892
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: alpha-D-Galactose 1-phosphate

528101
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579503
type: Reaction
name: diacylglycerol kinase (n-C12:0)
product: 504351
kinetic law: 504363
reactant: 504315
product: 504327
reversible: false
fast: false
notes: GENE_ASSOCIATION: b4042 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.7.1.107
reactant: 504303
product: 504339

504351
type: SpeciesReference
stoichiometry: 1.0
species: 575645

575645
type: Species
notes: FORMULA: C27H51O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-didodecanoyl-sn-glycerol 3-phosphate

587150
type: LocalParameter
units: 456180
value: 0.0

587148
type: LocalParameter
units: 456180
value: 0.0

587147
type: LocalParameter
units: 456180
value: 1000.0

587145
type: LocalParameter
units: 456180
value: 0.0

504315
type: SpeciesReference
stoichiometry: 1.0
species: 574373

504327
type: SpeciesReference
stoichiometry: 1.0
species: 574239

504303
type: SpeciesReference
stoichiometry: 1.0
species: 573760

573760
type: Species
notes: FORMULA: C27H52O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)

504339
type: SpeciesReference
stoichiometry: 1.0
species: 575090

581703
type: Reaction
notes: GENE_ASSOCIATION: (b1473 or b1907 or b0112 or b0576) SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 619873
reactant: 619848
kinetic law: 619886
reactant: 619836
reversible: true
name: L-tyrosine reversible transport via proton symport (periplasm)
product: 619860
fast: false

619873
type: SpeciesReference
stoichiometry: 1.0
species: 576316

576316
type: Species
notes: FORMULA: C9H11NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Tyrosine

619848
type: SpeciesReference
stoichiometry: 1.0
species: 578157

578157
type: Species
notes: FORMULA: C9H11NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Tyrosine

596109
type: LocalParameter
units: 456180
value: 0.0

596108
type: LocalParameter
units: 456180
value: 0.0

596106
type: LocalParameter
units: 456180
value: 1000.0

596105
type: LocalParameter
units: 456180
value: -1000.0

619836
type: SpeciesReference
stoichiometry: 1.0
species: 577887

619860
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579571
type: Reaction
product: 507383
fast: false
reactant: 507359
product: 507395
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
name: 2,3-dihydroxybenzoylserine hydrolase
reversible: false
kinetic law: 507407
reactant: 507371

507383
type: SpeciesReference
stoichiometry: 1.0
species: 573808

573808
type: Species
notes: FORMULA: C7H5O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2,3-Dihydroxybenzoate

507359
type: SpeciesReference
stoichiometry: 1.0
species: 573812

573812
type: Species
notes: FORMULA: C10H10NO6 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2,3-dihydroxybenzoylserine

507395
type: SpeciesReference
stoichiometry: 1.0
species: 576016

587428
type: LocalParameter
units: 456180
value: 0.0

587427
type: LocalParameter
units: 456180
value: 0.0

587425
type: LocalParameter
units: 456180
value: 1000.0

587424
type: LocalParameter
units: 456180
value: 0.0

507371
type: SpeciesReference
stoichiometry: 1.0
species: 575099

578957
type: Reaction
kinetic law: 477676
product: 477664
product: 477652
reactant: 477640
notes: GENE_ASSOCIATION: b3225 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 4.1.3.3
fast: false
reversible: false
name: N-Acetylneuraminate lyase

584631
type: LocalParameter
units: 456180
value: 0.0

584630
type: LocalParameter
units: 456180
value: 0.0

584628
type: LocalParameter
units: 456180
value: 1000.0

584627
type: LocalParameter
units: 456180
value: 0.0

477664
type: SpeciesReference
stoichiometry: 1.0
species: 575920

477652
type: SpeciesReference
stoichiometry: 1.0
species: 574207

574207
type: Species
notes: FORMULA: C8H15NO6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-mannosamine

477640
type: SpeciesReference
stoichiometry: 1.0
species: 574213

574213
type: Species
notes: FORMULA: C11H18NO9 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetylneuraminate

580936
type: Reaction
reversible: false
reactant: 570917
reactant: 570904
name: glucosyltransferase I (LPS O16 antigen biosynthesis)
fast: false
notes: GENE_ASSOCIATION: b2032 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
product: 570929
product: 570942
kinetic law: 570966
product: 570954

570917
type: SpeciesReference
stoichiometry: 1.0
species: 576382

570904
type: SpeciesReference
stoichiometry: 1.0
species: 574339

574339
type: Species
notes: FORMULA: C71H115N1O17P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate

570929
type: SpeciesReference
stoichiometry: 1.0
species: 574919

574919
type: Species
notes: FORMULA: C77H125N1O22P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate

570942
type: SpeciesReference
stoichiometry: 1.0
species: 575090

593202
type: LocalParameter
units: 456180
value: 0.0

593199
type: LocalParameter
units: 456180
value: 0.0

593198
type: LocalParameter
units: 456180
value: 1000.0

593195
type: LocalParameter
units: 456180
value: 0.0

570954
type: SpeciesReference
stoichiometry: 1.0
species: 576370

579434
type: Reaction
product: 500990
reversible: false
product: 500978
reactant: 500966
fast: false
kinetic law: 501003
name: cytosine transport in via proton symport (periplasm)
reactant: 500954
notes: GENE_ASSOCIATION: b0336 SUBSYSTEM: Transport, Inner Membrane EC Number:

500990
type: SpeciesReference
stoichiometry: 1.0
species: 575090

500978
type: SpeciesReference
stoichiometry: 1.0
species: 574512

574512
type: Species
notes: FORMULA: C4H5N3O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Cytosine

500966
type: SpeciesReference
stoichiometry: 1.0
species: 577887

586864
type: LocalParameter
units: 456180
value: 0.0

586862
type: LocalParameter
units: 456180
value: 0.0

586861
type: LocalParameter
units: 456180
value: 1000.0

586859
type: LocalParameter
units: 456180
value: 0.0

500954
type: SpeciesReference
stoichiometry: 1.0
species: 577736

577736
type: Species
notes: FORMULA: C4H5N3O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Cytosine

574486
type: Species
notes: FORMULA: C43H82N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cyclopropane phosphatidylethanolamine (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)

575878
type: Species
notes: FORMULA: C34H65N1O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylserine (ditetradecanoyl, n-C14:0)

574799
type: Species
notes: FORMULA: C27H42N9O12 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ferrichrome minus Fe(III)

576457
type: Species
notes: FORMULA: C10H11N4O15P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: XTP

576727
type: Species
notes: FORMULA: C7H15NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Carnitine

578660
type: Reaction
kinetic law: 465972
reactant: 465960
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Tyramine exchange

583460
type: LocalParameter
units: 456180
value: 0.0

583459
type: LocalParameter
units: 456180
value: 0.0

583457
type: LocalParameter
units: 456180
value: 1000.0

583456
type: LocalParameter
units: 456180
value: 0.0

465960
type: SpeciesReference
stoichiometry: 1.0
species: 577428

577428
type: Species
notes: FORMULA: C8H12NO CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Tyramine

578438
type: Reaction
kinetic law: 462387
reactant: 462374
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Glucarate exchange

582683
type: LocalParameter
units: 456180
value: 0.0

582682
type: LocalParameter
units: 456180
value: 0.0

582681
type: LocalParameter
units: 456180
value: 1000.0

582680
type: LocalParameter
units: 456180
value: 0.0

462374
type: SpeciesReference
stoichiometry: 1.0
species: 576984

576984
type: Species
notes: FORMULA: C6H8O8 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glucarate

576412
type: Species
notes: FORMULA: C79H126N3O22P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose

581604
type: Reaction
name: thymidine transport in via proton symport (periplasm)
reactant: 615643
kinetic law: 615679
reversible: false
fast: false
reactant: 615631
product: 615655
product: 615667
notes: GENE_ASSOCIATION: (b2393 or b2964) SUBSYSTEM: Transport, Inner Membrane EC Number:

615643
type: SpeciesReference
stoichiometry: 1.0
species: 578141

578141
type: Species
notes: FORMULA: C10H14N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Thymidine

595741
type: LocalParameter
units: 456180
value: 0.0

595739
type: LocalParameter
units: 456180
value: 0.0

595738
type: LocalParameter
units: 456180
value: 1000.0

595736
type: LocalParameter
units: 456180
value: 0.0

615631
type: SpeciesReference
stoichiometry: 1.0
species: 577887

615655
type: SpeciesReference
stoichiometry: 1.0
species: 575090

615667
type: SpeciesReference
stoichiometry: 1.0
species: 576196

576196
type: Species
notes: FORMULA: C10H14N2O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Thymidine

580749
type: Reaction
kinetic law: 562476
reactant: 562428
reactant: 562440
reversible: false
fast: false
product: 562452
notes: GENE_ASSOCIATION: b0826 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 562464
name: molybdopterin synthase sulfurylase
reactant: 562415

592281
type: LocalParameter
units: 456180
value: 0.0

592280
type: LocalParameter
units: 456180
value: 0.0

592277
type: LocalParameter
units: 456180
value: 1000.0

592276
type: LocalParameter
units: 456180
value: 0.0

562428
type: SpeciesReference
stoichiometry: 1.0
species: 575090

562440
type: SpeciesReference
stoichiometry: 1.0
species: 575459

575459
type: Species
notes: FORMULA: C1O2X CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: MoaD Protein with carboxylate

562452
type: SpeciesReference
stoichiometry: 1.0
species: 575456

575456
type: Species
notes: FORMULA: C11H12N5O8P1X CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: MoaD Protein with bound AMP

562464
type: SpeciesReference
stoichiometry: 1.0
species: 575824

562415
type: SpeciesReference
stoichiometry: 1.0
species: 574373

577182
type: Species
notes: FORMULA: C5H11NO3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Methionine Sulfoxide

578373
type: Reaction
kinetic law: 461347
reactant: 461335
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: ethanesulfonate exchange

582478
type: LocalParameter
units: 456180
value: 0.0

582476
type: LocalParameter
units: 456180
value: 0.0

582475
type: LocalParameter
units: 456180
value: 1000.0

582473
type: LocalParameter
units: 456180
value: 0.0

461335
type: SpeciesReference
stoichiometry: 1.0
species: 576855

576855
type: Species
notes: FORMULA: C2H5O3S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: ethanesulfonate

578588
type: Reaction
kinetic law: 464816
reactant: 464804
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Propanal exchange

583200
type: LocalParameter
units: 456180
value: 0.0

583198
type: LocalParameter
units: 456180
value: 0.0

583197
type: LocalParameter
units: 456180
value: 1000.0

583195
type: LocalParameter
units: 456180
value: 0.0

464804
type: SpeciesReference
stoichiometry: 1.0
species: 577284

577284
type: Species
notes: FORMULA: C3H6O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Propanal

573788
type: Species
notes: FORMULA: C19H35O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-hexadec-9-enoyl-sn-glycerol 3-phosphate

578031
type: Species
notes: FORMULA: C35H63O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate

580015
type: Reaction
kinetic law: 528379
product: 528367
reactant: 528354
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Galactitol transport via diffusion (extracellular to periplasm)

589226
type: LocalParameter
units: 456180
value: 0.0

589224
type: LocalParameter
units: 456180
value: 0.0

589223
type: LocalParameter
units: 456180
value: 1000.0

589221
type: LocalParameter
units: 456180
value: -1000.0

528367
type: SpeciesReference
stoichiometry: 1.0
species: 577847

577847
type: Species
notes: FORMULA: C6H14O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Galactitol

528354
type: SpeciesReference
stoichiometry: 1.0
species: 576960

576960
type: Species
notes: FORMULA: C6H14O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Galactitol

576007
type: Species
notes: FORMULA: HSe CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Selenide

581517
type: Reaction
kinetic law: 612043
product: 612031
reactant: 612019
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: sulfite transport via diffusion (extracellular to periplasm)

595422
type: LocalParameter
units: 456180
value: 0.0

595421
type: LocalParameter
units: 456180
value: 0.0

595419
type: LocalParameter
units: 456180
value: 1000.0

595418
type: LocalParameter
units: 456180
value: -1000.0

612031
type: SpeciesReference
stoichiometry: 1.0
species: 578120

578120
type: Species
notes: FORMULA: O3S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Sulfite

612019
type: SpeciesReference
stoichiometry: 1.0
species: 577356

577356
type: Species
notes: FORMULA: O3S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Sulfite

578286
type: Reaction
kinetic law: 459948
reactant: 459936
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Aerobactin exchange

582177
type: LocalParameter
units: 456180
value: 0.0

582176
type: LocalParameter
units: 456180
value: 0.0

582175
type: LocalParameter
units: 456180
value: 1000.0

582174
type: LocalParameter
units: 456180
value: 0.0

459936
type: SpeciesReference
stoichiometry: 1.0
species: 576649

576649
type: Species
notes: FORMULA: C22H33FeN4O13 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Aerobactin

577676
type: Species
notes: FORMULA: C34H52N6O19 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide

580748
type: Reaction
kinetic law: 562403
fast: false
product: 562378
reactant: 562354
reactant: 562342
reactant: 562330
reversible: false
product: 562366
notes: GENE_ASSOCIATION: (b0784 and b0785) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 562390
name: molybdopterin synthase

592275
type: LocalParameter
units: 456180
value: 0.0

592273
type: LocalParameter
units: 456180
value: 0.0

592272
type: LocalParameter
units: 456180
value: 1000.0

592269
type: LocalParameter
units: 456180
value: 0.0

562378
type: SpeciesReference
stoichiometry: 2.0
species: 575459

562354
type: SpeciesReference
stoichiometry: 2.0
species: 575462

562342
type: SpeciesReference
stoichiometry: 1.0
species: 574523

562330
type: SpeciesReference
stoichiometry: 1.0
species: 574498

574498
type: Species
notes: FORMULA: C10H13N5O8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cyclic pyranopterin monophosphate

562366
type: SpeciesReference
stoichiometry: 5.0
species: 575090

562390
type: SpeciesReference
stoichiometry: 1.0
species: 575477

575477
type: Species
notes: FORMULA: C10H10N5O6PS2Cu CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: molybdopterin

579744
type: Reaction
kinetic law: 513989
product: 513977
reactant: 513965
notes: GENE_ASSOCIATION: b3792 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
fast: false
reversible: false
name: enterobacterial common antigen transferase (flippase, cytoplasm to periplasm)

588021
type: LocalParameter
units: 456180
value: 0.0

588020
type: LocalParameter
units: 456180
value: 0.0

588018
type: LocalParameter
units: 456180
value: 1000.0

588017
type: LocalParameter
units: 456180
value: 0.0

513977
type: SpeciesReference
stoichiometry: 1.0
species: 578174

513965
type: SpeciesReference
stoichiometry: 1.0
species: 576412

581100
type: Reaction
reactant: 586303
fast: false
product: 586450
name: phosphatidylglycerophosphate transport via ABC system (n-C12:0, periplasm)
product: 586388
kinetic law: 586534
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 586498
product: 586413
reactant: 586267
reversible: false
reactant: 586340

586303
type: SpeciesReference
stoichiometry: 1.0
species: 575099

586450
type: SpeciesReference
stoichiometry: 1.0
species: 575785

586388
type: SpeciesReference
stoichiometry: 1.0
species: 574239

593883
type: LocalParameter
units: 456180
value: 0.0

593882
type: LocalParameter
units: 456180
value: 0.0

593880
type: LocalParameter
units: 456180
value: 1000.0

593879
type: LocalParameter
units: 456180
value: 0.0

586498
type: SpeciesReference
stoichiometry: 1.0
species: 578060

578060
type: Species
notes: FORMULA: C30H57O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)

586413
type: SpeciesReference
stoichiometry: 1.0
species: 575090

586267
type: SpeciesReference
stoichiometry: 1.0
species: 574373

586340
type: SpeciesReference
stoichiometry: 1.0
species: 575737

579439
type: Reaction
product: 501283
notes: GENE_ASSOCIATION: b4111 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 501259
kinetic law: 501295
name: cronobetaine outward transport (H+ antiport)
reactant: 501247
fast: false
product: 501271
reversible: true

501283
type: SpeciesReference
stoichiometry: 1.0
species: 575090

501259
type: SpeciesReference
stoichiometry: 1.0
species: 577887

586886
type: LocalParameter
units: 456180
value: 0.0

586884
type: LocalParameter
units: 456180
value: 0.0

586883
type: LocalParameter
units: 456180
value: 1000.0

586881
type: LocalParameter
units: 456180
value: -1000.0

501247
type: SpeciesReference
stoichiometry: 1.0
species: 577737

577737
type: Species
notes: FORMULA: C7H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: crotonobetaine

501271
type: SpeciesReference
stoichiometry: 1.0
species: 574515

575513
type: Species
notes: FORMULA: C8H24N3 CHARGE: 3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-3-aminopropyl-1,5-diaminopentane

581013
type: Reaction
kinetic law: 574950
product: 574938
reactant: 574926
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: phenethylacetaldehyde transport via diffusion (extracellular to periplasm)

593559
type: LocalParameter
units: 456180
value: 0.0

593557
type: LocalParameter
units: 456180
value: 0.0

593556
type: LocalParameter
units: 456180
value: 1000.0

593554
type: LocalParameter
units: 456180
value: -1000.0

574938
type: SpeciesReference
stoichiometry: 1.0
species: 578036

578036
type: Species
notes: FORMULA: C8H8O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phenylacetaldehyde

574926
type: SpeciesReference
stoichiometry: 1.0
species: 577263

577263
type: Species
notes: FORMULA: C8H8O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Phenylacetaldehyde

579703
type: Reaction
kinetic law: 511737
fast: false
product: 511724
product: 511712
notes: GENE_ASSOCIATION: b3564 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reactant: 511676
name: 1-Deoxy-D-xylulose kinase
reactant: 511688
reversible: false
product: 511700

587814
type: LocalParameter
units: 456180
value: 0.0

587812
type: LocalParameter
units: 456180
value: 0.0

587811
type: LocalParameter
units: 456180
value: 1000.0

587809
type: LocalParameter
units: 456180
value: 0.0

511724
type: SpeciesReference
stoichiometry: 1.0
species: 575090

511712
type: SpeciesReference
stoichiometry: 1.0
species: 574730

574730
type: Species
notes: FORMULA: C5H9O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-deoxy-D-xylulose 5-phosphate

511676
type: SpeciesReference
stoichiometry: 1.0
species: 574373

511688
type: SpeciesReference
stoichiometry: 1.0
species: 574727

574727
type: Species
notes: FORMULA: C5H10O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-deoxy-D-xylulose

511700
type: SpeciesReference
stoichiometry: 1.0
species: 574239

578489
type: Reaction
kinetic law: 463207
reactant: 463194
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Isoleucine exchange

582844
type: LocalParameter
units: 456180
value: 0.0

582843
type: LocalParameter
units: 456180
value: 0.0

582841
type: LocalParameter
units: 456180
value: 1000.0

582840
type: LocalParameter
units: 456180
value: 0.0

463194
type: SpeciesReference
stoichiometry: 1.0
species: 577086

577086
type: Species
notes: FORMULA: C6H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Isoleucine

575447
type: Species
notes: FORMULA: C6H14NO2S CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: S-Methyl-L-methionine

580319
type: Reaction
notes: GENE_ASSOCIATION: (b2866 and b2867 and b2868) SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
reactant: 542718
reactant: 542706
product: 542766
name: hypoxanthine dehydrogenase
reversible: false
fast: false
product: 542754
product: 542742
reactant: 542730
kinetic law: 542778

542718
type: SpeciesReference
stoichiometry: 1.0
species: 575198

542706
type: SpeciesReference
stoichiometry: 1.0
species: 575099

542766
type: SpeciesReference
stoichiometry: 1.0
species: 576448

542754
type: SpeciesReference
stoichiometry: 1.0
species: 575522

542742
type: SpeciesReference
stoichiometry: 1.0
species: 575090

542730
type: SpeciesReference
stoichiometry: 1.0
species: 575519

590509
type: LocalParameter
units: 456180
value: 0.0

590507
type: LocalParameter
units: 456180
value: 0.0

590506
type: LocalParameter
units: 456180
value: 1000.0

590504
type: LocalParameter
units: 456180
value: 0.0

576355
type: Species
notes: FORMULA: C23H33N4O20P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: UDP-N-acetylmuramoyl-L-alanine

577947
type: Species
notes: FORMULA: C9H15O9 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2(alpha-D-Mannosyl)-D-glycerate

579616
type: Reaction
reactant: 509506
product: 509542
notes: GENE_ASSOCIATION: b2232 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
fast: false
product: 509554
kinetic law: 509567
name: 3-Dimethylubiquinonol 3-methyltransferase
reactant: 509518
product: 509530

509506
type: SpeciesReference
stoichiometry: 1.0
species: 573924

573924
type: Species
notes: FORMULA: C48H74O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol

509542
type: SpeciesReference
stoichiometry: 1.0
species: 575090

509554
type: SpeciesReference
stoichiometry: 1.0
species: 575926

587610
type: LocalParameter
units: 456180
value: 0.0

587609
type: LocalParameter
units: 456180
value: 0.0

587607
type: LocalParameter
units: 456180
value: 1000.0

587606
type: LocalParameter
units: 456180
value: 0.0

509518
type: SpeciesReference
stoichiometry: 1.0
species: 574289

509530
type: SpeciesReference
stoichiometry: 1.0
species: 574255

580649
type: Reaction
kinetic law: 558310
product: 558298
reactant: 558285
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-methionine transport via diffusion (extracellular to periplasm)

591845
type: LocalParameter
units: 456180
value: 0.0

591843
type: LocalParameter
units: 456180
value: 0.0

591842
type: LocalParameter
units: 456180
value: 1000.0

591840
type: LocalParameter
units: 456180
value: -1000.0

558298
type: SpeciesReference
stoichiometry: 1.0
species: 577952

577952
type: Species
notes: FORMULA: C5H10NO2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Methionine

558285
type: SpeciesReference
stoichiometry: 1.0
species: 577173

577173
type: Species
notes: FORMULA: C5H10NO2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Methionine

574106
type: Species
notes: FORMULA: C4H6NO7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Phospho-L-aspartate

578388
type: Reaction
kinetic law: 461588
reactant: 461576
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Ferrichrome exchange

582533
type: LocalParameter
units: 456180
value: 0.0

582531
type: LocalParameter
units: 456180
value: 0.0

582530
type: LocalParameter
units: 456180
value: 1000.0

582528
type: LocalParameter
units: 456180
value: 0.0

461576
type: SpeciesReference
stoichiometry: 1.0
species: 576885

576885
type: Species
notes: FORMULA: C27H42FeN9O12 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Ferrichrome

580071
type: Reaction
kinetic law: 531145
product: 531133
reactant: 531121
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-glucuronate 1-phosphate transport via diffusion (extracellular to periplasm)

589473
type: LocalParameter
units: 456180
value: 0.0

589472
type: LocalParameter
units: 456180
value: 0.0

589470
type: LocalParameter
units: 456180
value: 1000.0

589469
type: LocalParameter
units: 456180
value: -1000.0

531133
type: SpeciesReference
stoichiometry: 1.0
species: 577862

577862
type: Species
notes: FORMULA: C6H8O10P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Glucuronate 1-phosphate

531121
type: SpeciesReference
stoichiometry: 1.0
species: 576990

581813
type: Reaction
kinetic law: 624562
product: 624550
reactant: 624538
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: xanthine transport via diffusion (extracellular to periplasm)

596516
type: LocalParameter
units: 456180
value: 0.0

596515
type: LocalParameter
units: 456180
value: 0.0

596513
type: LocalParameter
units: 456180
value: 1000.0

596512
type: LocalParameter
units: 456180
value: -1000.0

624550
type: SpeciesReference
stoichiometry: 1.0
species: 578181

624538
type: SpeciesReference
stoichiometry: 1.0
species: 577467

577467
type: Species
notes: FORMULA: C5H4N4O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Xanthine

578711
type: Reaction
kinetic law: 467049
product: 467037
reactant: 467025
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: 23cGMP transport via diffusion (extracellular to periplasm)

583642
type: LocalParameter
units: 456180
value: 0.0

583641
type: LocalParameter
units: 456180
value: 0.0

583639
type: LocalParameter
units: 456180
value: 1000.0

583638
type: LocalParameter
units: 456180
value: -1000.0

467037
type: SpeciesReference
stoichiometry: 1.0
species: 577574

577574
type: Species
notes: FORMULA: C10H11N5O7P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2',3'-Cyclic GMP

467025
type: SpeciesReference
stoichiometry: 1.0
species: 576499

576499
type: Species
notes: FORMULA: C10H11N5O7P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 2',3'-Cyclic GMP

576963
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Galacturonate

581787
type: Reaction
reactant: 623423
reactant: 623410
name: uricase
reversible: false
reactant: 623436
fast: false
product: 623449
kinetic law: 623488
product: 623462
product: 623475
notes: GENE_ASSOCIATION: SUBSYSTEM: Unassigned EC Number: 1.7.3.3

623423
type: SpeciesReference
stoichiometry: 1.0
species: 575558

623410
type: SpeciesReference
stoichiometry: 2.0
species: 575099

623436
type: SpeciesReference
stoichiometry: 1.0
species: 576424

623449
type: SpeciesReference
stoichiometry: 1.0
species: 574281

574281
type: Species
notes: FORMULA: C4H6N4O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Allantoin

596423
type: LocalParameter
units: 456180
value: 0.0

596421
type: LocalParameter
units: 456180
value: 0.0

596420
type: LocalParameter
units: 456180
value: 1000.0

596418
type: LocalParameter
units: 456180
value: 0.0

623462
type: SpeciesReference
stoichiometry: 1.0
species: 574476

623475
type: SpeciesReference
stoichiometry: 1.0
species: 575102

575102
type: Species
notes: FORMULA: H2O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hydrogen peroxide

578624
type: Reaction
kinetic law: 465394
reactant: 465382
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Sulfite exchange

583331
type: LocalParameter
units: 456180
value: 0.0

583330
type: LocalParameter
units: 456180
value: 0.0

583328
type: LocalParameter
units: 456180
value: 1000.0

583327
type: LocalParameter
units: 456180
value: 0.0

465382
type: SpeciesReference
stoichiometry: 1.0
species: 577356

577164
type: Species
notes: FORMULA: C9H15O9 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 2(alpha-D-Mannosyl)-D-glycerate

575678
type: Species
notes: FORMULA: C6H11O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-Pantoate

577746
type: Species
notes: FORMULA: C3H7NO2S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Cysteine

579015
type: Reaction
product: 480340
fast: false
name: adenosine transport in via proton symport (periplasm)
product: 480328
reversible: false
notes: GENE_ASSOCIATION: (b2964 or b2393) SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 480353
reactant: 480316
reactant: 480304

480340
type: SpeciesReference
stoichiometry: 1.0
species: 575090

480328
type: SpeciesReference
stoichiometry: 1.0
species: 574231

585111
type: LocalParameter
units: 456180
value: 0.0

585110
type: LocalParameter
units: 456180
value: 0.0

585108
type: LocalParameter
units: 456180
value: 1000.0

585107
type: LocalParameter
units: 456180
value: 0.0

480316
type: SpeciesReference
stoichiometry: 1.0
species: 577887

480304
type: SpeciesReference
stoichiometry: 1.0
species: 577656

579913
type: Reaction
fast: false
product: 522964
reactant: 522904
kinetic law: 522989
reactant: 522928
name: iron-sulfur cluster damage (nitrous oxide, spontaneous)
product: 522952
reactant: 522916
product: 522940
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 522976
reversible: false

522964
type: SpeciesReference
stoichiometry: 1.0
species: 575099

522904
type: SpeciesReference
stoichiometry: 2.0
species: 574092

588720
type: LocalParameter
units: 456180
value: 0.0

588718
type: LocalParameter
units: 456180
value: 0.0

588717
type: LocalParameter
units: 456180
value: 1000.0

588715
type: LocalParameter
units: 456180
value: 0.0

522928
type: SpeciesReference
stoichiometry: 2.0
species: 575546

575546
type: Species
notes: FORMULA: NO CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nitric oxide

522952
type: SpeciesReference
stoichiometry: 2.0
species: 574784

574784
type: Species
notes: FORMULA: Fe CHARGE: 3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Fe3+

522916
type: SpeciesReference
stoichiometry: 2.0
species: 575090

522940
type: SpeciesReference
stoichiometry: 2.0
species: 573971

573971
type: Species
notes: FORMULA: S4Fe3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: [3Fe-4S] damaged iron-sulfur cluster

522976
type: SpeciesReference
stoichiometry: 1.0
species: 575504

579270
type: Reaction
reactant: 492823
reversible: false
product: 492872
fast: false
product: 492860
reactant: 492847
kinetic law: 492884
reactant: 492835
notes: GENE_ASSOCIATION: (b3857 or (b3857 and b3856)) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
name: bis-molybdopterin guanine dinucleotide synthase

492823
type: SpeciesReference
stoichiometry: 1.0
species: 574385

574385
type: Species
notes: FORMULA: C30H32N15O20P3S4Mo CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: bis-molybdopterin mono-guanine dinucleotide

492872
type: SpeciesReference
stoichiometry: 1.0
species: 575824

492860
type: SpeciesReference
stoichiometry: 1.0
species: 574387

574387
type: Species
notes: FORMULA: C40H44N20O27P4S4Mo CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: bis-molybdopterin guanine dinucleotide

492847
type: SpeciesReference
stoichiometry: 1.0
species: 575090

586188
type: LocalParameter
units: 456180
value: 0.0

586187
type: LocalParameter
units: 456180
value: 0.0

586185
type: LocalParameter
units: 456180
value: 1000.0

586184
type: LocalParameter
units: 456180
value: 0.0

492835
type: SpeciesReference
stoichiometry: 1.0
species: 575081

580008
type: Reaction
kinetic law: 528004
product: 527980
name: D-galactarte transport via proton symport, reversible (periplasm)
notes: GENE_ASSOCIATION: (b2789 or b3127) SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: true
product: 527992
reactant: 527956
reactant: 527968
fast: false

589187
type: LocalParameter
units: 456180
value: 0.0

589186
type: LocalParameter
units: 456180
value: 0.0

589184
type: LocalParameter
units: 456180
value: 1000.0

589183
type: LocalParameter
units: 456180
value: -1000.0

527980
type: SpeciesReference
stoichiometry: 1.0
species: 574895

527992
type: SpeciesReference
stoichiometry: 1.0
species: 575090

527956
type: SpeciesReference
stoichiometry: 1.0
species: 577842

577842
type: Species
notes: FORMULA: C6H8O8 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Galactarate

527968
type: SpeciesReference
stoichiometry: 1.0
species: 577887

580381
type: Reaction
kinetic law: 545451
reactant: 545391
notes: GENE_ASSOCIATION: b0477 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.1.73
reactant: 545403
reversible: false
product: 545415
product: 545427
fast: false
name: insosine kinase
product: 545439

590745
type: LocalParameter
units: 456180
value: 0.0

590744
type: LocalParameter
units: 456180
value: 0.0

590742
type: LocalParameter
units: 456180
value: 1000.0

590741
type: LocalParameter
units: 456180
value: 0.0

545391
type: SpeciesReference
stoichiometry: 1.0
species: 574373

545403
type: SpeciesReference
stoichiometry: 1.0
species: 575240

545415
type: SpeciesReference
stoichiometry: 1.0
species: 574239

545427
type: SpeciesReference
stoichiometry: 1.0
species: 575090

545439
type: SpeciesReference
stoichiometry: 1.0
species: 575231

575950
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Ribulose

580635
type: Reaction
kinetic law: 557786
product: 557774
product: 557762
reactant: 557750
notes: GENE_ASSOCIATION: b2746 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
fast: false
reversible: false
name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

591793
type: LocalParameter
units: 456180
value: 0.0

591792
type: LocalParameter
units: 456180
value: 0.0

591790
type: LocalParameter
units: 456180
value: 1000.0

591789
type: LocalParameter
units: 456180
value: 0.0

557774
type: SpeciesReference
stoichiometry: 1.0
species: 574474

557762
type: SpeciesReference
stoichiometry: 1.0
species: 573912

573912
type: Species
notes: FORMULA: C5H10O9P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate

557750
type: SpeciesReference
stoichiometry: 1.0
species: 573934

573934
type: Species
notes: FORMULA: C14H22N3O17P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

580560
type: Reaction
product: 554477
notes: GENE_ASSOCIATION: b2323 SUBSYSTEM: Membrane Lipid Metabolism EC Number:
product: 554489
reactant: 554453
reversible: false
fast: false
kinetic law: 554501
name: Malonyl-ACP decarboxylase
reactant: 554465

554477
type: SpeciesReference
stoichiometry: 1.0
species: 574179

574179
type: Species
notes: FORMULA: C13H23N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Acetyl-ACP

554489
type: SpeciesReference
stoichiometry: 1.0
species: 574476

554453
type: SpeciesReference
stoichiometry: 1.0
species: 575090

591489
type: LocalParameter
units: 456180
value: 0.0

591487
type: LocalParameter
units: 456180
value: 0.0

591486
type: LocalParameter
units: 456180
value: 1000.0

591484
type: LocalParameter
units: 456180
value: 0.0

554465
type: SpeciesReference
stoichiometry: 1.0
species: 575357

576244
type: Species
notes: FORMULA: R CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tRNA(Gln)

575054
type: Species
notes: FORMULA: C10H12N5O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GMP

574561
type: Species
notes: FORMULA: C31H50N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Decanoyl-CoA (n-C10:0CoA)

580007
type: Reaction
kinetic law: 527944
product: 527932
reactant: 527920
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-galactonate transport via diffusion (extracellular to periplasm)

589182
type: LocalParameter
units: 456180
value: 0.0

589180
type: LocalParameter
units: 456180
value: 0.0

589179
type: LocalParameter
units: 456180
value: 1000.0

589177
type: LocalParameter
units: 456180
value: -1000.0

527932
type: SpeciesReference
stoichiometry: 1.0
species: 577844

577844
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Galactonate

527920
type: SpeciesReference
stoichiometry: 1.0
species: 576954

573904
type: Species
notes: FORMULA: C6H8N3O7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate

575627
type: Species
notes: FORMULA: C10H10N2O11P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Orotidine 5'-phosphate

576948
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: alpha-D-Galactose 1-phosphate

580682
type: Reaction
product: 559745
kinetic law: 559769
reactant: 559733
fast: false
name: murein L,D-carboxypeptidase (murein4p4p) (periplasm)
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
reactant: 559721
reversible: false
product: 559757

559745
type: SpeciesReference
stoichiometry: 1.0
species: 577664

591996
type: LocalParameter
units: 456180
value: 0.0

591994
type: LocalParameter
units: 456180
value: 0.0

591993
type: LocalParameter
units: 456180
value: 1000.0

591991
type: LocalParameter
units: 456180
value: 0.0

559733
type: SpeciesReference
stoichiometry: 1.0
species: 577976

577976
type: Species
notes: FORMULA: C74H114N14O40 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)

559721
type: SpeciesReference
stoichiometry: 1.0
species: 577890

559757
type: SpeciesReference
stoichiometry: 1.0
species: 577974

577974
type: Species
notes: FORMULA: C71H109N13O39 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)

579103
type: Reaction
product: 484553
reversible: false
fast: false
reactant: 484517
product: 484529
kinetic law: 484565
reactant: 484505
product: 484541
notes: GENE_ASSOCIATION: SUBSYSTEM: Alternate Carbon Metabolism EC Number:
name: aldehyde dehydrogenase (butanal, NAD)
reactant: 484493

484553
type: SpeciesReference
stoichiometry: 1.0
species: 575522

484517
type: SpeciesReference
stoichiometry: 1.0
species: 575519

484529
type: SpeciesReference
stoichiometry: 1.0
species: 574397

574397
type: Species
notes: FORMULA: C4H7O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Butyrate (n-C4:0)

585475
type: LocalParameter
units: 456180
value: 0.0

585474
type: LocalParameter
units: 456180
value: 0.0

585472
type: LocalParameter
units: 456180
value: 1000.0

585471
type: LocalParameter
units: 456180
value: 0.0

484505
type: SpeciesReference
stoichiometry: 1.0
species: 575099

484541
type: SpeciesReference
stoichiometry: 2.0
species: 575090

484493
type: SpeciesReference
stoichiometry: 1.0
species: 574389

574389
type: Species
notes: FORMULA: C4H8O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Butanal

581432
type: Reaction
fast: false
reactant: 608000
product: 608025
notes: GENE_ASSOCIATION: (((b2234 and b2235) and b3781) or ((b2234 and b2235) and b2582)) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 1.17.4.1
reactant: 608013
name: ribonucleoside-diphosphate reductase (UDP)
reversible: false
product: 608049
kinetic law: 608061
product: 608037

608000
type: SpeciesReference
stoichiometry: 1.0
species: 576220

576220
type: Species
notes: FORMULA: XH2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Reduced thioredoxin

608025
type: SpeciesReference
stoichiometry: 1.0
species: 574715

608013
type: SpeciesReference
stoichiometry: 1.0
species: 576370

608049
type: SpeciesReference
stoichiometry: 1.0
species: 576217

576217
type: Species
notes: FORMULA: X CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Oxidized thioredoxin

595097
type: LocalParameter
units: 456180
value: 0.0

595096
type: LocalParameter
units: 456180
value: 0.0

595094
type: LocalParameter
units: 456180
value: 1000.0

595093
type: LocalParameter
units: 456180
value: 0.0

608037
type: SpeciesReference
stoichiometry: 1.0
species: 575099

578715
type: Reaction
kinetic law: 467181
product: 467169
reactant: 467157
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: 2,3-diaminopropionate transport via diffusion

583658
type: LocalParameter
units: 456180
value: 0.0

583657
type: LocalParameter
units: 456180
value: 0.0

583655
type: LocalParameter
units: 456180
value: 1000.0

583654
type: LocalParameter
units: 456180
value: -1000.0

467169
type: SpeciesReference
stoichiometry: 1.0
species: 577577

577577
type: Species
notes: FORMULA: C3H9N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2,3-diaminopropionate

467157
type: SpeciesReference
stoichiometry: 1.0
species: 576505

576505
type: Species
notes: FORMULA: C3H9N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 2,3-diaminopropionate

579242
type: Reaction
kinetic law: 491431
reversible: true
name: aspartate transaminase
product: 491419
notes: GENE_ASSOCIATION: b0928 SUBSYSTEM: Alanine and Aspartate Metabolism EC Number: 2.6.1.1
product: 491407
reactant: 491383
fast: false
reactant: 491395

586073
type: LocalParameter
units: 456180
value: 0.0

586071
type: LocalParameter
units: 456180
value: 0.0

586070
type: LocalParameter
units: 456180
value: 1000.0

586068
type: LocalParameter
units: 456180
value: -1000.0

491419
type: SpeciesReference
stoichiometry: 1.0
species: 575564

491407
type: SpeciesReference
stoichiometry: 1.0
species: 574991

491383
type: SpeciesReference
stoichiometry: 1.0
species: 574263

491395
type: SpeciesReference
stoichiometry: 1.0
species: 574363

579171
type: Reaction
notes: GENE_ASSOCIATION: b0968 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.6.1.7
name: acylphosphatase (C16:0)
reversible: false
reactant: 487802
kinetic law: 487850
product: 487814
product: 487838
fast: false
product: 487826
reactant: 487790

487802
type: SpeciesReference
stoichiometry: 1.0
species: 575117

575117
type: Species
notes: FORMULA: C16H32O5P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecanoyl-phosphate (n-C16:0)

585756
type: LocalParameter
units: 456180
value: 0.0

585754
type: LocalParameter
units: 456180
value: 0.0

585753
type: LocalParameter
units: 456180
value: 1000.0

585751
type: LocalParameter
units: 456180
value: 0.0

487814
type: SpeciesReference
stoichiometry: 2.0
species: 575090

487838
type: SpeciesReference
stoichiometry: 1.0
species: 575785

487826
type: SpeciesReference
stoichiometry: 1.0
species: 575114

575114
type: Species
notes: FORMULA: C16H31O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexadecanoate (n-C16:0)

487790
type: SpeciesReference
stoichiometry: 1.0
species: 575099

577683
type: Species
notes: FORMULA: C22H33FeN4O13 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Aerobactin

580595
type: Reaction
notes: GENE_ASSOCIATION: (b0731 and b2415 and b2416) SUBSYSTEM: Transport, Inner Membrane EC Number:
name: 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm)
product: 556147
product: 556134
reactant: 556110
reactant: 556122
kinetic law: 556159
fast: false
reversible: false

556147
type: SpeciesReference
stoichiometry: 1.0
species: 575920

556134
type: SpeciesReference
stoichiometry: 1.0
species: 575396

575396
type: Species
notes: FORMULA: C9H14O12P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2(alpha-D-Mannosyl-6-phosphate)-D-glycerate

556110
type: SpeciesReference
stoichiometry: 1.0
species: 575711

556122
type: SpeciesReference
stoichiometry: 1.0
species: 577947

591637
type: LocalParameter
units: 456180
value: 0.0

591636
type: LocalParameter
units: 456180
value: 0.0

591634
type: LocalParameter
units: 456180
value: 1000.0

591633
type: LocalParameter
units: 456180
value: 0.0

581145
type: Reaction
fast: false
reversible: true
notes: GENE_ASSOCIATION: (b4054 or b0928 or b3770) SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 2.6.1.58
reactant: 593116
product: 593164
product: 593200
reactant: 593140
name: phenylalanine transaminase
kinetic law: 593236

593116
type: SpeciesReference
stoichiometry: 1.0
species: 574263

593164
type: SpeciesReference
stoichiometry: 1.0
species: 574991

593200
type: SpeciesReference
stoichiometry: 1.0
species: 575779

575779
type: Species
notes: FORMULA: C9H7O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Phenylpyruvate

593140
type: SpeciesReference
stoichiometry: 1.0
species: 575761

575761
type: Species
notes: FORMULA: C9H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Phenylalanine

594048
type: LocalParameter
units: 456180
value: 0.0

594047
type: LocalParameter
units: 456180
value: 0.0

594045
type: LocalParameter
units: 456180
value: 1000.0

594044
type: LocalParameter
units: 456180
value: -1000.0

578628
type: Reaction
kinetic law: 465467
reactant: 465455
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Succinate exchange

583348
type: LocalParameter
units: 456180
value: 0.0

583346
type: LocalParameter
units: 456180
value: 0.0

583345
type: LocalParameter
units: 456180
value: 1000.0

583343
type: LocalParameter
units: 456180
value: 0.0

465455
type: SpeciesReference
stoichiometry: 1.0
species: 577365

580536
type: Reaction
reactant: 553339
name: Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:0)
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5
kinetic law: 553399
fast: false
product: 553387
product: 553363
reactant: 553351
product: 553375
reversible: false

553339
type: SpeciesReference
stoichiometry: 1.0
species: 573848

591395
type: LocalParameter
units: 456180
value: 0.0

591394
type: LocalParameter
units: 456180
value: 0.0

591392
type: LocalParameter
units: 456180
value: 1000.0

591391
type: LocalParameter
units: 456180
value: 0.0

553387
type: SpeciesReference
stoichiometry: 1.0
species: 576301

553363
type: SpeciesReference
stoichiometry: 1.0
species: 574874

574874
type: Species
notes: FORMULA: C6H14O8P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glycerophosphoglycerol

553351
type: SpeciesReference
stoichiometry: 1.0
species: 575099

553375
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579155
type: Reaction
product: 486958
name: Ap5A hydrolase
fast: false
reversible: false
product: 486946
notes: GENE_ASSOCIATION: b0049 SUBSYSTEM: Nucleotide Salvage Pathway EC Number:
reactant: 486909
reactant: 486921
kinetic law: 486970
product: 486933

486958
type: SpeciesReference
stoichiometry: 2.0
species: 575090

486946
type: SpeciesReference
stoichiometry: 1.0
species: 574373

486909
type: SpeciesReference
stoichiometry: 1.0
species: 574313

486921
type: SpeciesReference
stoichiometry: 1.0
species: 575099

585690
type: LocalParameter
units: 456180
value: 0.0

585688
type: LocalParameter
units: 456180
value: 0.0

585687
type: LocalParameter
units: 456180
value: 1000.0

585685
type: LocalParameter
units: 456180
value: 0.0

486933
type: SpeciesReference
stoichiometry: 1.0
species: 574239

581295
type: Reaction
notes: GENE_ASSOCIATION: b1015 SUBSYSTEM: Transport, Inner Membrane EC Number:
product: 602556
kinetic law: 602580
name: Na+/Proline-L symporter (periplasm)
product: 602568
fast: false
reactant: 602532
reactant: 602544
reversible: false

602556
type: SpeciesReference
stoichiometry: 1.0
species: 575510

594609
type: LocalParameter
units: 456180
value: 0.0

594608
type: LocalParameter
units: 456180
value: 0.0

594606
type: LocalParameter
units: 456180
value: 1000.0

594605
type: LocalParameter
units: 456180
value: 0.0

602568
type: SpeciesReference
stoichiometry: 1.0
species: 575863

602532
type: SpeciesReference
stoichiometry: 1.0
species: 577994

602544
type: SpeciesReference
stoichiometry: 1.0
species: 578088

581058
type: Reaction
fast: false
product: 578548
product: 578572
kinetic law: 578584
reversible: false
name: phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)
product: 578560
product: 578536
reactant: 578524
reactant: 578500
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 578512

578548
type: SpeciesReference
stoichiometry: 1.0
species: 575090

578572
type: SpeciesReference
stoichiometry: 1.0
species: 578042

578042
type: Species
notes: FORMULA: C37H74N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dihexadecanoyl, n-C16:0)

593729
type: LocalParameter
units: 456180
value: 0.0

593728
type: LocalParameter
units: 456180
value: 0.0

593726
type: LocalParameter
units: 456180
value: 1000.0

593725
type: LocalParameter
units: 456180
value: 0.0

578560
type: SpeciesReference
stoichiometry: 1.0
species: 575785

578536
type: SpeciesReference
stoichiometry: 1.0
species: 574239

578524
type: SpeciesReference
stoichiometry: 1.0
species: 575699

575699
type: Species
notes: FORMULA: C37H74N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylethanolamine (dihexadecanoyl, n-C16:0)

578500
type: SpeciesReference
stoichiometry: 1.0
species: 574373

578512
type: SpeciesReference
stoichiometry: 1.0
species: 575099

579888
type: Reaction
product: 521555
kinetic law: 521567
name: ferrichrome transport via ton system (extracellular)
product: 521543
fast: false
reactant: 521530
reactant: 521517
notes: GENE_ASSOCIATION: (b0150 and (b1252 and b3005 and b3006)) SUBSYSTEM: Transport, Outer Membrane EC Number:
reversible: false

521555
type: SpeciesReference
stoichiometry: 1.0
species: 577809

588615
type: LocalParameter
units: 456180
value: 0.0

588614
type: LocalParameter
units: 456180
value: 0.0

588612
type: LocalParameter
units: 456180
value: 1000.0

588611
type: LocalParameter
units: 456180
value: 0.0

521543
type: SpeciesReference
stoichiometry: 1.0
species: 575090

521530
type: SpeciesReference
stoichiometry: 1.0
species: 577887

521517
type: SpeciesReference
stoichiometry: 1.0
species: 576885

580565
type: Reaction
reactant: 554746
name: malate synthase
product: 554783
product: 554795
kinetic law: 554819
notes: GENE_ASSOCIATION: (b4014 or b2976) SUBSYSTEM: Anaplerotic Reactions EC Number: 4.1.3.2
fast: false
reactant: 554771
reactant: 554758
product: 554807
reversible: false

554746
type: SpeciesReference
stoichiometry: 1.0
species: 574187

554783
type: SpeciesReference
stoichiometry: 1.0
species: 574478

554795
type: SpeciesReference
stoichiometry: 1.0
species: 575090

591516
type: LocalParameter
units: 456180
value: 0.0

591515
type: LocalParameter
units: 456180
value: 0.0

591513
type: LocalParameter
units: 456180
value: 1000.0

591512
type: LocalParameter
units: 456180
value: 0.0

554771
type: SpeciesReference
stoichiometry: 1.0
species: 575099

554758
type: SpeciesReference
stoichiometry: 1.0
species: 575009

554807
type: SpeciesReference
stoichiometry: 1.0
species: 575354

580449
type: Reaction
notes: GENE_ASSOCIATION: b0401 SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 548855
product: 548843
name: L-leucine reversible transport via proton symport (periplasm)
reactant: 548807
fast: false
reactant: 548819
reversible: true
product: 548831

591038
type: LocalParameter
units: 456180
value: 0.0

591036
type: LocalParameter
units: 456180
value: 0.0

591035
type: LocalParameter
units: 456180
value: 1000.0

591033
type: LocalParameter
units: 456180
value: -1000.0

548843
type: SpeciesReference
stoichiometry: 1.0
species: 575309

575309
type: Species
notes: FORMULA: C6H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Leucine

548807
type: SpeciesReference
stoichiometry: 1.0
species: 577887

548819
type: SpeciesReference
stoichiometry: 1.0
species: 577923

577923
type: Species
notes: FORMULA: C6H13NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Leucine

548831
type: SpeciesReference
stoichiometry: 1.0
species: 575090

577592
type: Species
notes: FORMULA: C20H40O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)

575318
type: Species
notes: FORMULA: C110H196N2O39P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: KDO(2)-lipid (A)

580478
type: Reaction
reactant: 550389
reactant: 550377
reversible: false
name: Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm)
kinetic law: 550438
product: 550426
product: 550413
product: 550401
fast: false
notes: GENE_ASSOCIATION: b0494 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5

550389
type: SpeciesReference
stoichiometry: 1.0
species: 577890

550377
type: SpeciesReference
stoichiometry: 1.0
species: 577518

577518
type: Species
notes: FORMULA: C17H36NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)

591159
type: LocalParameter
units: 456180
value: 0.0

591157
type: LocalParameter
units: 456180
value: 0.0

591156
type: LocalParameter
units: 456180
value: 1000.0

591154
type: LocalParameter
units: 456180
value: 0.0

550426
type: SpeciesReference
stoichiometry: 1.0
species: 577887

550413
type: SpeciesReference
stoichiometry: 1.0
species: 577830

550401
type: SpeciesReference
stoichiometry: 1.0
species: 577757

580564
type: Reaction
kinetic law: 554734
product: 554722
reactant: 554710
notes: GENE_ASSOCIATION: (b2215 or b1377 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-Malate transport via diffusion (extracellular to periplasm)

591511
type: LocalParameter
units: 456180
value: 0.0

591509
type: LocalParameter
units: 456180
value: 0.0

591508
type: LocalParameter
units: 456180
value: 1000.0

591506
type: LocalParameter
units: 456180
value: -1000.0

554722
type: SpeciesReference
stoichiometry: 1.0
species: 577934

577934
type: Species
notes: FORMULA: C4H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Malate

554710
type: SpeciesReference
stoichiometry: 1.0
species: 577137

577137
type: Species
notes: FORMULA: C4H4O5 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Malate

577929
type: Species
notes: FORMULA: XC16H30O1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: lipoprotein

578777
type: Reaction
reactant: 469422
notes: GENE_ASSOCIATION: b3553 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
name: 2-Dehydro-L-gulonate reductase to gluconate (NADH)
reversible: false
reactant: 469446
product: 469470
fast: false
reactant: 469434
kinetic law: 469482
product: 469458

469422
type: SpeciesReference
stoichiometry: 1.0
species: 573880

573880
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Dehydro-L-gulonate

469446
type: SpeciesReference
stoichiometry: 1.0
species: 575522

469470
type: SpeciesReference
stoichiometry: 1.0
species: 575519

469434
type: SpeciesReference
stoichiometry: 1.0
species: 575090

583916
type: LocalParameter
units: 456180
value: 0.0

583915
type: LocalParameter
units: 456180
value: 0.0

583913
type: LocalParameter
units: 456180
value: 1000.0

583912
type: LocalParameter
units: 456180
value: 0.0

469458
type: SpeciesReference
stoichiometry: 1.0
species: 574973

574973
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Gluconate

579450
type: Reaction
kinetic law: 501828
product: 501816
reactant: 501804
notes: GENE_ASSOCIATION: (b2215 or b0241 or b0929 or b1377) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: copper (Cu+2) transport via diffusion (extracellular to periplasm)

586930
type: LocalParameter
units: 456180
value: 0.0

586928
type: LocalParameter
units: 456180
value: 0.0

586927
type: LocalParameter
units: 456180
value: 1000.0

586925
type: LocalParameter
units: 456180
value: -1000.0

501816
type: SpeciesReference
stoichiometry: 1.0
species: 577740

501804
type: SpeciesReference
stoichiometry: 1.0
species: 576739

576739
type: Species
notes: FORMULA: Cu CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Cu2+

577668
type: Species
notes: FORMULA: C6H12O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Allose

579394
type: Reaction
kinetic law: 498913
product: 498889
reactant: 498853
fast: false
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
product: 498901
name: core oligosaccharide lipid A transport via ABC system (periplasm)
reversible: false
product: 498877
product: 498865
reactant: 498828
reactant: 498841

586700
type: LocalParameter
units: 456180
value: 0.0

586698
type: LocalParameter
units: 456180
value: 0.0

586697
type: LocalParameter
units: 456180
value: 1000.0

586695
type: LocalParameter
units: 456180
value: 0.0

498889
type: SpeciesReference
stoichiometry: 1.0
species: 575785

498853
type: SpeciesReference
stoichiometry: 1.0
species: 575099

498901
type: SpeciesReference
stoichiometry: 1.0
species: 577727

498877
type: SpeciesReference
stoichiometry: 1.0
species: 575090

498865
type: SpeciesReference
stoichiometry: 1.0
species: 574239

498828
type: SpeciesReference
stoichiometry: 1.0
species: 574373

498841
type: SpeciesReference
stoichiometry: 1.0
species: 574482

574482
type: Species
notes: FORMULA: C176H303N2O100P4 CHARGE: -11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: core oligosaccharide lipid A

580815
type: Reaction
reactant: 565310
notes: GENE_ASSOCIATION: (b2710 and b2711) SUBSYSTEM: Nitrogen Metabolism EC Number:
reactant: 565298
kinetic law: 565371
product: 565359
reactant: 565322
fast: false
name: NADH:flavorubredoxin oxidoreductase
product: 565334
product: 565346
reversible: false

565310
type: SpeciesReference
stoichiometry: 1.0
species: 575522

565298
type: SpeciesReference
stoichiometry: 1.0
species: 575090

592610
type: LocalParameter
units: 456180
value: 0.0

592609
type: LocalParameter
units: 456180
value: 0.0

592606
type: LocalParameter
units: 456180
value: 1000.0

592605
type: LocalParameter
units: 456180
value: 0.0

565359
type: SpeciesReference
stoichiometry: 1.0
species: 575519

565322
type: SpeciesReference
stoichiometry: 2.0
species: 575546

565334
type: SpeciesReference
stoichiometry: 1.0
species: 575099

565346
type: SpeciesReference
stoichiometry: 1.0
species: 575504

581318
type: Reaction
name: phosphoserine phosphatase (L-serine)
product: 603401
product: 603413
reversible: false
reactant: 603377
notes: GENE_ASSOCIATION: b4388 SUBSYSTEM: Glycine and Serine Metabolism EC Number: 3.1.3.3
kinetic law: 603425
reactant: 603389
fast: false

603401
type: SpeciesReference
stoichiometry: 1.0
species: 575785

603413
type: SpeciesReference
stoichiometry: 1.0
species: 576016

603377
type: SpeciesReference
stoichiometry: 1.0
species: 575099

594692
type: LocalParameter
units: 456180
value: 0.0

594690
type: LocalParameter
units: 456180
value: 0.0

594689
type: LocalParameter
units: 456180
value: 1000.0

594687
type: LocalParameter
units: 456180
value: 0.0

603389
type: SpeciesReference
stoichiometry: 1.0
species: 575899

581247
type: Reaction
product: 600334
reversible: false
notes: GENE_ASSOCIATION: b3639 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 4.1.1.36
reactant: 600309
kinetic law: 600358
product: 600346
fast: false
name: phosphopantothenoylcysteine decarboxylase
reactant: 600322

600334
type: SpeciesReference
stoichiometry: 1.0
species: 574476

600309
type: SpeciesReference
stoichiometry: 1.0
species: 574112

574112
type: Species
notes: FORMULA: C12H20N2O9PS CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-((R)-4-Phosphopantothenoyl)-L-cysteine

594428
type: LocalParameter
units: 456180
value: 0.0

594426
type: LocalParameter
units: 456180
value: 0.0

594425
type: LocalParameter
units: 456180
value: 1000.0

594423
type: LocalParameter
units: 456180
value: 0.0

600346
type: SpeciesReference
stoichiometry: 1.0
species: 575675

575675
type: Species
notes: FORMULA: C11H21N2O7PS CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Pantetheine 4'-phosphate

600322
type: SpeciesReference
stoichiometry: 1.0
species: 575090

576226
type: Species
notes: FORMULA: C12H21O14P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: alpha,alpha'-Trehalose 6-phosphate

575480
type: Species
notes: FORMULA: C20H22N10O12P2S2Cu CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: adenylated molybdopterin

578001
type: Species
notes: FORMULA: NO CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Nitric oxide

579314
type: Reaction
kinetic law: 495202
product: 495190
reactant: 495178
notes: GENE_ASSOCIATION: b3040 SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:
fast: false
reversible: false
name: cadmium (+2) transport in via permease (no H+)

586370
type: LocalParameter
units: 456180
value: 0.0

586368
type: LocalParameter
units: 456180
value: 0.0

586367
type: LocalParameter
units: 456180
value: 1000.0

586365
type: LocalParameter
units: 456180
value: 0.0

495190
type: SpeciesReference
stoichiometry: 1.0
species: 574427

495178
type: SpeciesReference
stoichiometry: 1.0
species: 577701

580983
type: Reaction
notes: GENE_ASSOCIATION: (b2965 or b0693) SUBSYSTEM: Arginine and Proline Metabolism EC Number: 4.1.1.17
name: Ornithine Decarboxylase
product: 572994
reactant: 572970
reversible: false
kinetic law: 573006
reactant: 572958
fast: false
product: 572982

572994
type: SpeciesReference
stoichiometry: 1.0
species: 575902

575902
type: Species
notes: FORMULA: C4H14N2 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Putrescine

572970
type: SpeciesReference
stoichiometry: 1.0
species: 575621

575621
type: Species
notes: FORMULA: C5H13N2O2 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Ornithine

593428
type: LocalParameter
units: 456180
value: 0.0

593425
type: LocalParameter
units: 456180
value: 0.0

593424
type: LocalParameter
units: 456180
value: 1000.0

593421
type: LocalParameter
units: 456180
value: 0.0

572958
type: SpeciesReference
stoichiometry: 1.0
species: 575090

572982
type: SpeciesReference
stoichiometry: 1.0
species: 574476

575818
type: Species
notes: FORMULA: C10H11N5O17P4 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Guanosine 3',5'-bis(diphosphate)

580386
type: Reaction
kinetic law: 545644
product: 545632
reactant: 545620
notes: GENE_ASSOCIATION: b0411 SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: true
name: inosine transport via diffusion (extracellular to periplasm)

590767
type: LocalParameter
units: 456180
value: 0.0

590766
type: LocalParameter
units: 456180
value: 0.0

590764
type: LocalParameter
units: 456180
value: 1000.0

590763
type: LocalParameter
units: 456180
value: -1000.0

545632
type: SpeciesReference
stoichiometry: 1.0
species: 577913

577913
type: Species
notes: FORMULA: C10H12N4O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Inosine

545620
type: SpeciesReference
stoichiometry: 1.0
species: 577098

577098
type: Species
notes: FORMULA: C10H12N4O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Inosine

578252
type: Reaction
kinetic law: 459394
reactant: 459381
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: N-Acetyl-D-glucosamine 1-phosphate exchange

582061
type: LocalParameter
units: 456180
value: 0.0

582060
type: LocalParameter
units: 456180
value: 0.0

582059
type: LocalParameter
units: 456180
value: 1000.0

582058
type: LocalParameter
units: 456180
value: 0.0

459381
type: SpeciesReference
stoichiometry: 1.0
species: 576580

576580
type: Species
notes: FORMULA: C8H14NO9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: N-Acetyl-D-glucosamine 1-phosphate

577617
type: Species
notes: FORMULA: C10H12N5O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 3'-GMP

575549
type: Species
notes: FORMULA: NO2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Nitrite

579227
type: Reaction
kinetic law: 490708
product: 490695
reactant: 490683
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: L-asparagine transport via diffusion (extracellular to periplasm)

586012
type: LocalParameter
units: 456180
value: 0.0

586011
type: LocalParameter
units: 456180
value: 0.0

586010
type: LocalParameter
units: 456180
value: 1000.0

585982
type: LocalParameter
units: 456180
value: -1000.0

490695
type: SpeciesReference
stoichiometry: 1.0
species: 577688

577688
type: Species
notes: FORMULA: C4H8N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Asparagine

490683
type: SpeciesReference
stoichiometry: 1.0
species: 576658

576658
type: Species
notes: FORMULA: C4H8N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Asparagine

578135
type: Species
notes: FORMULA: C12H17N4OS CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Thiamin

580982
type: Reaction
product: 572910
name: 3-Oxo-pimeloyl-[ACP] methyl ester synthase
reversible: false
reactant: 572874
reactant: 572898
notes: GENE_ASSOCIATION: b2323 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 2.3.1.41
kinetic law: 572946
fast: false
product: 572934
product: 572922
reactant: 572886

572910
type: SpeciesReference
stoichiometry: 1.0
species: 574155

572874
type: SpeciesReference
stoichiometry: 1.0
species: 575042

575042
type: Species
notes: FORMULA: C17H29N2O10PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glutaryl-[acyl-carrier protein] methyl ester

572898
type: SpeciesReference
stoichiometry: 1.0
species: 575357

593420
type: LocalParameter
units: 456180
value: 0.0

593419
type: LocalParameter
units: 456180
value: 0.0

593416
type: LocalParameter
units: 456180
value: 1000.0

593415
type: LocalParameter
units: 456180
value: 0.0

572934
type: SpeciesReference
stoichiometry: 1.0
species: 575618

572922
type: SpeciesReference
stoichiometry: 1.0
species: 574476

572886
type: SpeciesReference
stoichiometry: 1.0
species: 575090

573942
type: Species
notes: FORMULA: C11H10O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate

580866
type: Reaction
fast: false
kinetic law: 567630
name: 5'-nucleotidase (dIMP) (periplasm)
reactant: 567594
reactant: 567582
product: 567606
product: 567618
reversible: false
notes: GENE_ASSOCIATION: (b0480 or b4055) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.3.5

592858
type: LocalParameter
units: 456180
value: 0.0

592857
type: LocalParameter
units: 456180
value: 0.0

592854
type: LocalParameter
units: 456180
value: 1000.0

592853
type: LocalParameter
units: 456180
value: 0.0

567594
type: SpeciesReference
stoichiometry: 1.0
species: 577890

567582
type: SpeciesReference
stoichiometry: 1.0
species: 577763

577763
type: Species
notes: FORMULA: C10H11N4O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: dIMP

567606
type: SpeciesReference
stoichiometry: 1.0
species: 577764

567618
type: SpeciesReference
stoichiometry: 1.0
species: 578076

579691
type: Reaction
kinetic law: 511147
product: 511135
reactant: 511123
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: dUMP transport via diffusion (extracellular to periplasm)

587764
type: LocalParameter
units: 456180
value: 0.0

587763
type: LocalParameter
units: 456180
value: 0.0

587761
type: LocalParameter
units: 456180
value: 1000.0

587760
type: LocalParameter
units: 456180
value: -1000.0

511135
type: SpeciesReference
stoichiometry: 1.0
species: 577781

577781
type: Species
notes: FORMULA: C9H11N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: dUMP

511123
type: SpeciesReference
stoichiometry: 1.0
species: 576837

576837
type: Species
notes: FORMULA: C9H11N2O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: dUMP

580952
type: Reaction
name: Octaprenyl pyrophosphate synthase
reactant: 571474
product: 571486
reactant: 571462
kinetic law: 571510
product: 571498
fast: false
reversible: false
notes: GENE_ASSOCIATION: b3187 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:

571474
type: SpeciesReference
stoichiometry: 5.0
species: 575243

571486
type: SpeciesReference
stoichiometry: 1.0
species: 575597

575597
type: Species
notes: FORMULA: C40H65O7P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: all-trans-Octaprenyl diphosphate

571462
type: SpeciesReference
stoichiometry: 1.0
species: 574841

593280
type: LocalParameter
units: 456180
value: 0.0

593279
type: LocalParameter
units: 456180
value: 0.0

593276
type: LocalParameter
units: 456180
value: 1000.0

593275
type: LocalParameter
units: 456180
value: 0.0

571498
type: SpeciesReference
stoichiometry: 5.0
species: 575824

580902
type: Reaction
product: 569167
product: 569155
reactant: 569119
reversible: false
kinetic law: 569179
reactant: 569131
notes: GENE_ASSOCIATION: b4161 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.6.1.15
fast: false
product: 569143
name: nucleoside-triphosphatase (CTP)

569167
type: SpeciesReference
stoichiometry: 1.0
species: 575785

569155
type: SpeciesReference
stoichiometry: 1.0
species: 575090

569119
type: SpeciesReference
stoichiometry: 1.0
species: 574519

593026
type: LocalParameter
units: 456180
value: 0.0

593025
type: LocalParameter
units: 456180
value: 0.0

593022
type: LocalParameter
units: 456180
value: 1000.0

593021
type: LocalParameter
units: 456180
value: 0.0

569131
type: SpeciesReference
stoichiometry: 1.0
species: 575099

569143
type: SpeciesReference
stoichiometry: 1.0
species: 574435

574435
type: Species
notes: FORMULA: C9H12N3O11P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CDP

580529
type: Reaction
reversible: false
reactant: 552831
kinetic law: 552891
reactant: 552843
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5
name: Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:0)
fast: false
product: 552879
product: 552855
product: 552867

552831
type: SpeciesReference
stoichiometry: 1.0
species: 573834

573834
type: Species
notes: FORMULA: C19H40NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)

591357
type: LocalParameter
units: 456180
value: 0.0

591355
type: LocalParameter
units: 456180
value: 0.0

591354
type: LocalParameter
units: 456180
value: 1000.0

591352
type: LocalParameter
units: 456180
value: 0.0

552843
type: SpeciesReference
stoichiometry: 1.0
species: 575099

552879
type: SpeciesReference
stoichiometry: 1.0
species: 576301

552855
type: SpeciesReference
stoichiometry: 1.0
species: 574871

552867
type: SpeciesReference
stoichiometry: 1.0
species: 575090

580865
type: Reaction
product: 567546
product: 567558
reversible: false
reactant: 567522
name: 5'-nucleotidase (dIMP)
kinetic law: 567570
notes: GENE_ASSOCIATION: (b2291 or b2744) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.1.3.5
reactant: 567534
fast: false

567546
type: SpeciesReference
stoichiometry: 1.0
species: 574649

574649
type: Species
notes: FORMULA: C10H12N4O4 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Deoxyinosine

567558
type: SpeciesReference
stoichiometry: 1.0
species: 575785

567522
type: SpeciesReference
stoichiometry: 1.0
species: 574646

574646
type: Species
notes: FORMULA: C10H11N4O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dIMP

592852
type: LocalParameter
units: 456180
value: 0.0

592849
type: LocalParameter
units: 456180
value: 0.0

592848
type: LocalParameter
units: 456180
value: 1000.0

592845
type: LocalParameter
units: 456180
value: 0.0

567534
type: SpeciesReference
stoichiometry: 1.0
species: 575099

578691
type: Reaction
kinetic law: 466519
product: 466506
reactant: 466494
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, Inner Membrane EC Number:
fast: false
reversible: false
name: 1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:1)

583572
type: LocalParameter
units: 456180
value: 0.0

583570
type: LocalParameter
units: 456180
value: 0.0

583569
type: LocalParameter
units: 456180
value: 1000.0

583567
type: LocalParameter
units: 456180
value: 0.0

466506
type: SpeciesReference
stoichiometry: 1.0
species: 573764

573764
type: Species
notes: FORMULA: C31H56O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)

466494
type: SpeciesReference
stoichiometry: 1.0
species: 577491

577491
type: Species
notes: FORMULA: C31H56O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)

579861
type: Reaction
reversible: false
reactant: 520074
name: ferric 2,3-dihydroxybenzoylserine transport via ABC system (periplasm)
reactant: 520050
product: 520098
fast: false
product: 520086
kinetic law: 520135
reactant: 520062
product: 520122
product: 520110
notes: GENE_ASSOCIATION: (b0592 and b0588 and b0590 and b0589) SUBSYSTEM: Inorganic Ion Transport and Metabolism EC Number:

520074
type: SpeciesReference
stoichiometry: 1.0
species: 577805

577805
type: Species
notes: FORMULA: C10H10NO6Fe CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: ferric 2,3-dihydroxybenzoylserine

520050
type: SpeciesReference
stoichiometry: 1.0
species: 574373

520098
type: SpeciesReference
stoichiometry: 1.0
species: 574787

574787
type: Species
notes: FORMULA: C10H10NO6Fe CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: ferric 2,3-dihydroxybenzoylserine

520086
type: SpeciesReference
stoichiometry: 1.0
species: 574239

588505
type: LocalParameter
units: 456180
value: 0.0

588504
type: LocalParameter
units: 456180
value: 0.0

588502
type: LocalParameter
units: 456180
value: 1000.0

588501
type: LocalParameter
units: 456180
value: 0.0

520062
type: SpeciesReference
stoichiometry: 1.0
species: 575099

520122
type: SpeciesReference
stoichiometry: 1.0
species: 575785

520110
type: SpeciesReference
stoichiometry: 1.0
species: 575090

578946
type: Reaction
product: 477252
kinetic law: 477264
reversible: false
notes: GENE_ASSOCIATION: b2428 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
name: N-acetylmuramate 6-phosphate hydrolase
reactant: 477215
reactant: 477227
product: 477239

477252
type: SpeciesReference
stoichiometry: 1.0
species: 575294

575294
type: Species
notes: FORMULA: C3H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Lactate

584587
type: LocalParameter
units: 456180
value: 0.0

584586
type: LocalParameter
units: 456180
value: 0.0

584584
type: LocalParameter
units: 456180
value: 1000.0

584583
type: LocalParameter
units: 456180
value: 0.0

477215
type: SpeciesReference
stoichiometry: 1.0
species: 574211

574211
type: Species
notes: FORMULA: C11H17NO11P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-acetylmuramate 6-phosphate

477227
type: SpeciesReference
stoichiometry: 1.0
species: 575099

477239
type: SpeciesReference
stoichiometry: 1.0
species: 574199

581706
type: Reaction
fast: false
reactant: 619946
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
reversible: false
product: 619970
reactant: 619958
kinetic law: 619994
product: 619982
reactant: 619934
name: ThDP adenylyl transferase

619946
type: SpeciesReference
stoichiometry: 1.0
species: 575090

619970
type: SpeciesReference
stoichiometry: 1.0
species: 574371

574371
type: Species
notes: FORMULA: C22H28N9O13P3S CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: adenosine thiamine triphosphate

619958
type: SpeciesReference
stoichiometry: 1.0
species: 576181

596120
type: LocalParameter
units: 456180
value: 0.0

596119
type: LocalParameter
units: 456180
value: 0.0

596117
type: LocalParameter
units: 456180
value: 1000.0

596116
type: LocalParameter
units: 456180
value: 0.0

619982
type: SpeciesReference
stoichiometry: 1.0
species: 575785

619934
type: SpeciesReference
stoichiometry: 1.0
species: 574239

579761
type: Reaction
kinetic law: 514657
product: 514633
reversible: false
product: 514645
notes: GENE_ASSOCIATION: b2378 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
name: Endotoxin Synthesis (palmitoleoyl ACP)
reactant: 514620
fast: false
reactant: 514608

588093
type: LocalParameter
units: 456180
value: 0.0

588091
type: LocalParameter
units: 456180
value: 0.0

588090
type: LocalParameter
units: 456180
value: 1000.0

588088
type: LocalParameter
units: 456180
value: 0.0

514633
type: SpeciesReference
stoichiometry: 1.0
species: 574155

514645
type: SpeciesReference
stoichiometry: 1.0
species: 575282

514620
type: SpeciesReference
stoichiometry: 1.0
species: 575276

575276
type: Species
notes: FORMULA: C84H148N2O37P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: KDO(2)-lipid IV(A)

514608
type: SpeciesReference
stoichiometry: 1.0
species: 575132

578859
type: Reaction
kinetic law: 473216
product: 473204
reactant: 473192
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: 3UMP transport via diffusion (extracellular to periplasm)

584230
type: LocalParameter
units: 456180
value: 0.0

584228
type: LocalParameter
units: 456180
value: 0.0

584227
type: LocalParameter
units: 456180
value: 1000.0

584225
type: LocalParameter
units: 456180
value: -1000.0

473204
type: SpeciesReference
stoichiometry: 1.0
species: 577623

577623
type: Species
notes: FORMULA: C9H11N2O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 3'-UMP

473192
type: SpeciesReference
stoichiometry: 1.0
species: 576535

576535
type: Species
notes: FORMULA: C9H11N2O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: 3'-UMP

580451
type: Reaction
kinetic law: 548941
product: 548929
reactant: 548917
reactant: 548904
notes: GENE_ASSOCIATION: b1651 SUBSYSTEM: Methylglyoxal Metabolism EC Number: 4.4.1.5
fast: false
reversible: false
name: lactoylglutathione lyase

591049
type: LocalParameter
units: 456180
value: 0.0

591047
type: LocalParameter
units: 456180
value: 0.0

591046
type: LocalParameter
units: 456180
value: 1000.0

591044
type: LocalParameter
units: 456180
value: 0.0

548929
type: SpeciesReference
stoichiometry: 1.0
species: 575315

575315
type: Species
notes: FORMULA: C13H20N3O8S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (R)-S-Lactoylglutathione

548917
type: SpeciesReference
stoichiometry: 1.0
species: 575495

575495
type: Species
notes: FORMULA: C3H4O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Methylglyoxal

548904
type: SpeciesReference
stoichiometry: 1.0
species: 575078

574403
type: Species
notes: FORMULA: C4H9O3S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: butanesulfonate

581753
type: Reaction
reactant: 621958
kinetic law: 622031
reactant: 621983
reversible: false
fast: false
name: Ureidoglycolate hydrolase
product: 622019
reactant: 621971
product: 622007
notes: GENE_ASSOCIATION: b0505 SUBSYSTEM: Nitrogen Metabolism EC Number: 3.5.3.19
product: 621995

621958
type: SpeciesReference
stoichiometry: 2.0
species: 575090

596296
type: LocalParameter
units: 456180
value: 0.0

596295
type: LocalParameter
units: 456180
value: 0.0

596293
type: LocalParameter
units: 456180
value: 1000.0

596292
type: LocalParameter
units: 456180
value: 0.0

621983
type: SpeciesReference
stoichiometry: 1.0
species: 576427

576427
type: Species
notes: FORMULA: C3H5N2O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: (-)-Ureidoglycolate

622019
type: SpeciesReference
stoichiometry: 2.0
species: 575534

621971
type: SpeciesReference
stoichiometry: 1.0
species: 575099

622007
type: SpeciesReference
stoichiometry: 1.0
species: 575009

621995
type: SpeciesReference
stoichiometry: 1.0
species: 574476

579487
type: Reaction
product: 503640
name: cytidine transport in via proton symport (periplasm)
reactant: 503616
fast: false
product: 503652
kinetic law: 503664
reactant: 503628
notes: GENE_ASSOCIATION: (b2393 or b2964) SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false

503640
type: SpeciesReference
stoichiometry: 1.0
species: 574538

574538
type: Species
notes: FORMULA: C9H13N3O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Cytidine

503616
type: SpeciesReference
stoichiometry: 1.0
species: 577748

503652
type: SpeciesReference
stoichiometry: 1.0
species: 575090

587084
type: LocalParameter
units: 456180
value: 0.0

587082
type: LocalParameter
units: 456180
value: 0.0

587081
type: LocalParameter
units: 456180
value: 1000.0

587079
type: LocalParameter
units: 456180
value: 0.0

503628
type: SpeciesReference
stoichiometry: 1.0
species: 577887

573938
type: Species
notes: FORMULA: C2H2O6P CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Phosphoglycolate

578750
type: Reaction
name: 2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:0)
reactant: 468247
product: 468272
reactant: 468235
kinetic law: 468308
reactant: 468259
fast: false
product: 468296
notes: GENE_ASSOCIATION: b2836 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.3.1.40
reversible: false
product: 468284

468247
type: SpeciesReference
stoichiometry: 1.0
species: 574373

468272
type: SpeciesReference
stoichiometry: 1.0
species: 574295

468235
type: SpeciesReference
stoichiometry: 1.0
species: 573838

583784
type: LocalParameter
units: 456180
value: 0.0

583783
type: LocalParameter
units: 456180
value: 0.0

583781
type: LocalParameter
units: 456180
value: 1000.0

583780
type: LocalParameter
units: 456180
value: 0.0

468259
type: SpeciesReference
stoichiometry: 1.0
species: 575114

468296
type: SpeciesReference
stoichiometry: 1.0
species: 575824

468284
type: SpeciesReference
stoichiometry: 1.0
species: 575699

578427
type: Reaction
kinetic law: 462218
reactant: 462206
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: D-Galacturonate exchange

582655
type: LocalParameter
units: 456180
value: 0.0

582653
type: LocalParameter
units: 456180
value: 0.0

582652
type: LocalParameter
units: 456180
value: 1000.0

582650
type: LocalParameter
units: 456180
value: 0.0

462206
type: SpeciesReference
stoichiometry: 1.0
species: 576963

576781
type: Species
notes: FORMULA: C3H6O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Dihydroxyacetone

576706
type: Species
notes: FORMULA: C9H12N3O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: CMP

579437
type: Reaction
product: 501107
product: 501094
reversible: false
name: Crotonobetaine-CoA Ligase
product: 501120
kinetic law: 501133
reactant: 501055
reactant: 501068
notes: GENE_ASSOCIATION: b0037 SUBSYSTEM: Oxidative Phosphorylation EC Number:
reactant: 501081
fast: false

501107
type: SpeciesReference
stoichiometry: 1.0
species: 574517

501094
type: SpeciesReference
stoichiometry: 1.0
species: 574239

501120
type: SpeciesReference
stoichiometry: 1.0
species: 575785

586875
type: LocalParameter
units: 456180
value: 0.0

586873
type: LocalParameter
units: 456180
value: 0.0

586872
type: LocalParameter
units: 456180
value: 1000.0

586870
type: LocalParameter
units: 456180
value: 0.0

501055
type: SpeciesReference
stoichiometry: 1.0
species: 574373

501068
type: SpeciesReference
stoichiometry: 1.0
species: 574478

501081
type: SpeciesReference
stoichiometry: 1.0
species: 574515

579760
type: Reaction
reactant: 514548
reversible: false
kinetic law: 514596
name: Endotoxin Synthesis (myristoyl transferase)
reactant: 514560
fast: false
notes: GENE_ASSOCIATION: b1855 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
product: 514572
product: 514584

514548
type: SpeciesReference
stoichiometry: 1.0
species: 575279

575279
type: Species
notes: FORMULA: C96H170N2O38P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: KDO(2)-lipid IV(A) with laurate

588087
type: LocalParameter
units: 456180
value: 0.0

588086
type: LocalParameter
units: 456180
value: 0.0

588084
type: LocalParameter
units: 456180
value: 1000.0

588083
type: LocalParameter
units: 456180
value: 0.0

514560
type: SpeciesReference
stoichiometry: 1.0
species: 575501

575501
type: Species
notes: FORMULA: C25H47N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Myristoyl-ACP (n-C14:0ACP)

514572
type: SpeciesReference
stoichiometry: 1.0
species: 574155

514584
type: SpeciesReference
stoichiometry: 1.0
species: 575318

578057
type: Species
notes: FORMULA: C42H82O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerol (dioctadecanoyl, n-C18:0)

578577
type: Reaction
kinetic law: 464640
reactant: 464627
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Phenylacetaldehyde exchange

583161
type: LocalParameter
units: 456180
value: 0.0

583160
type: LocalParameter
units: 456180
value: 0.0

583158
type: LocalParameter
units: 456180
value: 1000.0

583157
type: LocalParameter
units: 456180
value: 0.0

464627
type: SpeciesReference
stoichiometry: 1.0
species: 577263

578115
type: Species
notes: FORMULA: C7H9O5 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Shikimate

581666
type: Reaction
product: 618348
reversible: false
notes: GENE_ASSOCIATION: (b2417 and b2415 and b2416 and b4240) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 618312
name: trehalose transport via PEP:Pyr PTS (periplasm)
fast: false
reactant: 618324
product: 618336
kinetic law: 618360

618348
type: SpeciesReference
stoichiometry: 1.0
species: 576226

618312
type: SpeciesReference
stoichiometry: 1.0
species: 575711

618324
type: SpeciesReference
stoichiometry: 1.0
species: 578145

578145
type: Species
notes: FORMULA: C12H22O11 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Trehalose

618336
type: SpeciesReference
stoichiometry: 1.0
species: 575920

595972
type: LocalParameter
units: 456180
value: 0.0

595970
type: LocalParameter
units: 456180
value: 0.0

595969
type: LocalParameter
units: 456180
value: 1000.0

595967
type: LocalParameter
units: 456180
value: 0.0

580907
type: Reaction
fast: false
reactant: 569349
reversible: false
product: 569385
name: Nucleoside triphosphate pyrophosphorylase (xtp)
product: 569373
notes: GENE_ASSOCIATION: b2954 SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 3.6.1.19
kinetic law: 569397
reactant: 569337
product: 569361

569349
type: SpeciesReference
stoichiometry: 1.0
species: 576457

569385
type: SpeciesReference
stoichiometry: 1.0
species: 576454

576454
type: Species
notes: FORMULA: C10H11N4O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Xanthosine 5'-phosphate

569373
type: SpeciesReference
stoichiometry: 1.0
species: 575824

593048
type: LocalParameter
units: 456180
value: 0.0

593045
type: LocalParameter
units: 456180
value: 0.0

593044
type: LocalParameter
units: 456180
value: 1000.0

593041
type: LocalParameter
units: 456180
value: 0.0

569337
type: SpeciesReference
stoichiometry: 1.0
species: 575099

569361
type: SpeciesReference
stoichiometry: 1.0
species: 575090

578663
type: Reaction
kinetic law: 466020
reactant: 466008
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Phosphotyrosine exchange

583471
type: LocalParameter
units: 456180
value: 0.0

583470
type: LocalParameter
units: 456180
value: 0.0

583468
type: LocalParameter
units: 456180
value: 1000.0

583467
type: LocalParameter
units: 456180
value: 0.0

466008
type: SpeciesReference
stoichiometry: 1.0
species: 577434

577434
type: Species
notes: FORMULA: C9H10NO6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Phosphotyrosine

578012
type: Species
notes: FORMULA: C191H310N4O107P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (O16 antigen)x4 undecaprenyl diphosphate

574597
type: Species
notes: FORMULA: C10H12N5O13P3 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dGTP

581607
type: Reaction
kinetic law: 615775
product: 615763
reactant: 615751
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: thymidine transport via diffusion (extracellular to periplasm)

595752
type: LocalParameter
units: 456180
value: 0.0

595750
type: LocalParameter
units: 456180
value: 0.0

595749
type: LocalParameter
units: 456180
value: 1000.0

595747
type: LocalParameter
units: 456180
value: -1000.0

615763
type: SpeciesReference
stoichiometry: 1.0
species: 578141

615751
type: SpeciesReference
stoichiometry: 1.0
species: 577398

580737
type: Reaction
reversible: false
name: molybdenum cofactor synthase
product: 561885
kinetic law: 561910
fast: false
product: 561861
product: 561897
reactant: 561849
reactant: 561837
notes: GENE_ASSOCIATION: b0827 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 561873
reactant: 561825

561885
type: SpeciesReference
stoichiometry: 1.0
species: 575099

592229
type: LocalParameter
units: 456180
value: 0.0

592228
type: LocalParameter
units: 456180
value: 0.0

592225
type: LocalParameter
units: 456180
value: 1000.0

592224
type: LocalParameter
units: 456180
value: 0.0

561861
type: SpeciesReference
stoichiometry: 1.0
species: 574295

561897
type: SpeciesReference
stoichiometry: 1.0
species: 575468

575468
type: Species
notes: FORMULA: C10H10N5O8PS2Mo CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: molybdenum cofactor

561849
type: SpeciesReference
stoichiometry: 1.0
species: 575480

561837
type: SpeciesReference
stoichiometry: 1.0
species: 575465

575465
type: Species
notes: FORMULA: MoO4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Molybdate

561873
type: SpeciesReference
stoichiometry: 1.0
species: 574523

561825
type: SpeciesReference
stoichiometry: 2.0
species: 575090

581579
type: Reaction
reversible: false
product: 614630
product: 614654
kinetic law: 614666
name: taurine transport via ABC system (periplasm)
reactant: 614594
fast: false
product: 614618
reactant: 614582
reactant: 614606
product: 614642
notes: GENE_ASSOCIATION: (b0365 and b0366 and b0367) SUBSYSTEM: Transport, Inner Membrane EC Number:

614630
type: SpeciesReference
stoichiometry: 1.0
species: 575090

614654
type: SpeciesReference
stoichiometry: 1.0
species: 576139

576139
type: Species
notes: FORMULA: C2H7NO3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Taurine

595647
type: LocalParameter
units: 456180
value: 0.0

595646
type: LocalParameter
units: 456180
value: 0.0

595644
type: LocalParameter
units: 456180
value: 1000.0

595643
type: LocalParameter
units: 456180
value: 0.0

614594
type: SpeciesReference
stoichiometry: 1.0
species: 575099

614618
type: SpeciesReference
stoichiometry: 1.0
species: 574239

614582
type: SpeciesReference
stoichiometry: 1.0
species: 574373

614606
type: SpeciesReference
stoichiometry: 1.0
species: 578132

578132
type: Species
notes: FORMULA: C2H7NO3S CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Taurine

614642
type: SpeciesReference
stoichiometry: 1.0
species: 575785

579733
type: Reaction
kinetic law: 513430
reactant: 513368
name: enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)
notes: GENE_ASSOCIATION: b1288 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.3.1.10
reactant: 513380
product: 513416
product: 513405
reactant: 513392
fast: false
reversible: false

587977
type: LocalParameter
units: 456180
value: 0.0

587976
type: LocalParameter
units: 456180
value: 0.0

587974
type: LocalParameter
units: 456180
value: 1000.0

587973
type: LocalParameter
units: 456180
value: 0.0

513368
type: SpeciesReference
stoichiometry: 1.0
species: 575090

513380
type: SpeciesReference
stoichiometry: 1.0
species: 575528

513416
type: SpeciesReference
stoichiometry: 1.0
species: 575525

513405
type: SpeciesReference
stoichiometry: 1.0
species: 575138

575138
type: Species
notes: FORMULA: C17H31N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Hexanoyl-ACP (n-C6:0ACP)

513392
type: SpeciesReference
stoichiometry: 1.0
species: 576166

576166
type: Species
notes: FORMULA: C17H29N2O8PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: trans-Hex-2-enoyl-[acyl-carrier protein]

578576
type: Reaction
kinetic law: 464614
reactant: 464601
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Orotate exchange

583156
type: LocalParameter
units: 456180
value: 0.0

583154
type: LocalParameter
units: 456180
value: 0.0

583153
type: LocalParameter
units: 456180
value: 1000.0

583151
type: LocalParameter
units: 456180
value: 0.0

464601
type: SpeciesReference
stoichiometry: 1.0
species: 577260

577260
type: Species
notes: FORMULA: C5H3N2O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Orotate

579389
type: Reaction
kinetic law: 498622
product: 498610
reactant: 498598
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: cobalt (Co+2) transport via diffusion (extracellular to periplasm)

586678
type: LocalParameter
units: 456180
value: 0.0

586676
type: LocalParameter
units: 456180
value: 0.0

586675
type: LocalParameter
units: 456180
value: 1000.0

586673
type: LocalParameter
units: 456180
value: -1000.0

498610
type: SpeciesReference
stoichiometry: 1.0
species: 577725

577725
type: Species
notes: FORMULA: Co CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Co2+

498598
type: SpeciesReference
stoichiometry: 1.0
species: 576712

576583
type: Species
notes: FORMULA: C8H15NO6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: N-Acetyl-D-mannosamine

578289
type: Reaction
kinetic law: 459996
reactant: 459984
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: L-Ascorbate exchange

582185
type: LocalParameter
units: 456180
value: 0.0

582184
type: LocalParameter
units: 456180
value: 0.0

582183
type: LocalParameter
units: 456180
value: 1000.0

582182
type: LocalParameter
units: 456180
value: 0.0

459984
type: SpeciesReference
stoichiometry: 1.0
species: 576655

576655
type: Species
notes: FORMULA: C6H8O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Ascorbate

579575
type: Reaction
reactant: 507564
kinetic law: 507612
product: 507588
fast: false
reversible: false
notes: GENE_ASSOCIATION: b0031 SUBSYSTEM: Threonine and Lysine Metabolism EC Number: 1.3.1.26
product: 507600
reactant: 507552
reactant: 507576
name: dihydrodipicolinate reductase (NADPH)

507564
type: SpeciesReference
stoichiometry: 1.0
species: 575090

587445
type: LocalParameter
units: 456180
value: 0.0

587443
type: LocalParameter
units: 456180
value: 0.0

587442
type: LocalParameter
units: 456180
value: 1000.0

587440
type: LocalParameter
units: 456180
value: 0.0

507588
type: SpeciesReference
stoichiometry: 1.0
species: 575525

507600
type: SpeciesReference
stoichiometry: 1.0
species: 576163

507552
type: SpeciesReference
stoichiometry: 1.0
species: 573814

573814
type: Species
notes: FORMULA: C7H5NO4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2,3-Dihydrodipicolinate

507576
type: SpeciesReference
stoichiometry: 1.0
species: 575528

580260
type: Reaction
kinetic law: 540084
product: 540072
reactant: 540060
notes: GENE_ASSOCIATION: b2344 SUBSYSTEM: Transport, Outer Membrane EC Number:
fast: false
reversible: false
name: Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)

590283
type: LocalParameter
units: 456180
value: 0.0

590282
type: LocalParameter
units: 456180
value: 0.0

590280
type: LocalParameter
units: 456180
value: 1000.0

590279
type: LocalParameter
units: 456180
value: 0.0

540072
type: SpeciesReference
stoichiometry: 1.0
species: 577895

540060
type: SpeciesReference
stoichiometry: 1.0
species: 577062

581549
type: Reaction
reactant: 613338
fast: false
product: 613362
kinetic law: 613374
product: 613350
reactant: 613326
notes: GENE_ASSOCIATION: (b0721 and b0722 and b0723 and b0724) SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.3.99.1
reversible: false
name: succinate dehydrogenase (irreversible)

613338
type: SpeciesReference
stoichiometry: 1.0
species: 576070

613362
type: SpeciesReference
stoichiometry: 1.0
species: 575926

595537
type: LocalParameter
units: 456180
value: 0.0

595536
type: LocalParameter
units: 456180
value: 0.0

595534
type: LocalParameter
units: 456180
value: 1000.0

595533
type: LocalParameter
units: 456180
value: 0.0

613350
type: SpeciesReference
stoichiometry: 1.0
species: 574859

613326
type: SpeciesReference
stoichiometry: 1.0
species: 575923

574096
type: Species
notes: FORMULA: C7H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Hydroxybenzoate

574682
type: Species
notes: FORMULA: C42H41N4O16 CHARGE: -7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: dihydrosirohydrochlorin

576766
type: Species
notes: FORMULA: C9H12N3O7P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: dCMP

578871
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: b4265 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 473744
kinetic law: 473780
reactant: 473732
product: 473768
fast: false
name: 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)
product: 473756

473744
type: SpeciesReference
stoichiometry: 1.0
species: 577887

584279
type: LocalParameter
units: 456180
value: 0.0

584278
type: LocalParameter
units: 456180
value: 0.0

584276
type: LocalParameter
units: 456180
value: 1000.0

584275
type: LocalParameter
units: 456180
value: -1000.0

473732
type: SpeciesReference
stoichiometry: 1.0
species: 577628

577628
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 5-Dehydro-D-gluconate

473768
type: SpeciesReference
stoichiometry: 1.0
species: 575090

473756
type: SpeciesReference
stoichiometry: 1.0
species: 574128

574128
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 5-Dehydro-D-gluconate

581832
type: Reaction
reactant: 625192
product: 625240
product: 625252
name: D-xylose transport via ABC system (periplasm)
reactant: 625204
product: 625228
product: 625216
reactant: 625180
kinetic law: 625264
notes: GENE_ASSOCIATION: (b3566 and b3567 and b3568) SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
fast: false

625192
type: SpeciesReference
stoichiometry: 1.0
species: 575099

625240
type: SpeciesReference
stoichiometry: 1.0
species: 575785

625252
type: SpeciesReference
stoichiometry: 1.0
species: 576469

576469
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Xylose

625204
type: SpeciesReference
stoichiometry: 1.0
species: 578186

578186
type: Species
notes: FORMULA: C5H10O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Xylose

625228
type: SpeciesReference
stoichiometry: 1.0
species: 575090

625216
type: SpeciesReference
stoichiometry: 1.0
species: 574239

625180
type: SpeciesReference
stoichiometry: 1.0
species: 574373

596588
type: LocalParameter
units: 456180
value: 0.0

596586
type: LocalParameter
units: 456180
value: 0.0

596585
type: LocalParameter
units: 456180
value: 1000.0

596583
type: LocalParameter
units: 456180
value: 0.0

580191
type: Reaction
reactant: 537165
product: 537189
kinetic law: 537201
fast: false
name: Glutathionylspermidine amidase
reversible: false
product: 537177
reactant: 537153
notes: GENE_ASSOCIATION: b2988 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 3.5.1.78

537165
type: SpeciesReference
stoichiometry: 1.0
species: 575099

537189
type: SpeciesReference
stoichiometry: 1.0
species: 576055

589985
type: LocalParameter
units: 456180
value: 0.0

589983
type: LocalParameter
units: 456180
value: 0.0

589982
type: LocalParameter
units: 456180
value: 1000.0

589980
type: LocalParameter
units: 456180
value: 0.0

537177
type: SpeciesReference
stoichiometry: 1.0
species: 575078

537153
type: SpeciesReference
stoichiometry: 1.0
species: 575084

575084
type: Species
notes: FORMULA: C17H36N6O5S CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Glutathionylspermidine

581342
type: Reaction
name: putrescine transport in via proton symport
product: 604510
reactant: 604485
kinetic law: 604522
notes: GENE_ASSOCIATION: (b1296 or b0692) SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
fast: false
product: 604497
reactant: 604473

604510
type: SpeciesReference
stoichiometry: 1.0
species: 575902

604485
type: SpeciesReference
stoichiometry: 1.0
species: 578094

578094
type: Species
notes: FORMULA: C4H14N2 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Putrescine

594780
type: LocalParameter
units: 456180
value: 0.0

594778
type: LocalParameter
units: 456180
value: 0.0

594777
type: LocalParameter
units: 456180
value: 1000.0

594775
type: LocalParameter
units: 456180
value: 0.0

604497
type: SpeciesReference
stoichiometry: 1.0
species: 575090

604473
type: SpeciesReference
stoichiometry: 1.0
species: 577887

576966
type: Species
notes: FORMULA: C6H14NO5 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glucosamine

578070
type: Species
notes: FORMULA: C42H81O13P2 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)

579941
type: Reaction
product: 524284
kinetic law: 524296
reactant: 524248
reversible: false
fast: false
notes: GENE_ASSOCIATION: b3374 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
product: 524260
name: Fructoselysine Kinase
product: 524272
reactant: 524236

524284
type: SpeciesReference
stoichiometry: 1.0
species: 575090

588835
type: LocalParameter
units: 456180
value: 0.0

588834
type: LocalParameter
units: 456180
value: 0.0

588832
type: LocalParameter
units: 456180
value: 1000.0

588831
type: LocalParameter
units: 456180
value: 0.0

524248
type: SpeciesReference
stoichiometry: 1.0
species: 574847

524260
type: SpeciesReference
stoichiometry: 1.0
species: 574239

524272
type: SpeciesReference
stoichiometry: 1.0
species: 574850

574850
type: Species
notes: FORMULA: C12H24N2O10P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: fructoselysine Phosphate

524236
type: SpeciesReference
stoichiometry: 1.0
species: 574373

579050
type: Reaction
fast: false
name: agmatinase
kinetic law: 481978
product: 481953
notes: GENE_ASSOCIATION: b2937 SUBSYSTEM: Arginine and Proline Metabolism EC Number: 3.5.3.11
reversible: false
product: 481966
reactant: 481929
reactant: 481941

585255
type: LocalParameter
units: 456180
value: 0.0

585254
type: LocalParameter
units: 456180
value: 0.0

585252
type: LocalParameter
units: 456180
value: 1000.0

585251
type: LocalParameter
units: 456180
value: 0.0

481953
type: SpeciesReference
stoichiometry: 1.0
species: 575902

481966
type: SpeciesReference
stoichiometry: 1.0
species: 576430

576430
type: Species
notes: FORMULA: CH4N2O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Urea

481929
type: SpeciesReference
stoichiometry: 1.0
species: 574253

574253
type: Species
notes: FORMULA: C5H16N4 CHARGE: 2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Agmatine

481941
type: SpeciesReference
stoichiometry: 1.0
species: 575099

579121
type: Reaction
name: aldose reductase (acetol)
reactant: 485303
notes: GENE_ASSOCIATION: b3945 SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
fast: false
product: 485339
kinetic law: 485351
reactant: 485315
reactant: 485291
reversible: false
product: 485327

485303
type: SpeciesReference
stoichiometry: 1.0
species: 575090

485339
type: SpeciesReference
stoichiometry: 1.0
species: 575519

585547
type: LocalParameter
units: 456180
value: 0.0

585545
type: LocalParameter
units: 456180
value: 0.0

585544
type: LocalParameter
units: 456180
value: 1000.0

585542
type: LocalParameter
units: 456180
value: 0.0

485315
type: SpeciesReference
stoichiometry: 1.0
species: 575522

485291
type: SpeciesReference
stoichiometry: 1.0
species: 574189

574189
type: Species
notes: FORMULA: C3H6O2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Acetol

485327
type: SpeciesReference
stoichiometry: 1.0
species: 573774

581261
type: Reaction
reactant: 600866
fast: false
name: prephenate dehydrogenase
kinetic law: 600914
product: 600890
product: 600902
product: 600878
reactant: 600854
notes: GENE_ASSOCIATION: b2600 SUBSYSTEM: Tyrosine, Tryptophan, and Phenylalanine Metabolism EC Number: 1.3.1.12
reversible: false

600866
type: SpeciesReference
stoichiometry: 1.0
species: 575821

575821
type: Species
notes: FORMULA: C10H8O6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Prephenate

594477
type: LocalParameter
units: 456180
value: 0.0

594476
type: LocalParameter
units: 456180
value: 0.0

594474
type: LocalParameter
units: 456180
value: 1000.0

594473
type: LocalParameter
units: 456180
value: 0.0

600890
type: SpeciesReference
stoichiometry: 1.0
species: 574476

600902
type: SpeciesReference
stoichiometry: 1.0
species: 575522

600878
type: SpeciesReference
stoichiometry: 1.0
species: 573951

573951
type: Species
notes: FORMULA: C9H7O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-(4-Hydroxyphenyl)pyruvate

600854
type: SpeciesReference
stoichiometry: 1.0
species: 575519

578901
type: Reaction
reactant: 475225
fast: false
kinetic law: 475273
product: 475261
name: 4-aminobutyrate transport in via proton symport (periplasm)
product: 475249
notes: GENE_ASSOCIATION: b2663 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 475237
reversible: false

475225
type: SpeciesReference
stoichiometry: 1.0
species: 577625

584400
type: LocalParameter
units: 456180
value: 0.0

584399
type: LocalParameter
units: 456180
value: 0.0

584397
type: LocalParameter
units: 456180
value: 1000.0

584396
type: LocalParameter
units: 456180
value: 0.0

475261
type: SpeciesReference
stoichiometry: 1.0
species: 575090

475249
type: SpeciesReference
stoichiometry: 1.0
species: 574076

574076
type: Species
notes: FORMULA: C4H9NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 4-Aminobutanoate

475237
type: SpeciesReference
stoichiometry: 1.0
species: 577887

581802
type: Reaction
reversible: true
product: 624127
reactant: 624115
reactant: 624103
product: 624140
name: L-valine reversible transport via proton symport (periplasm)
fast: false
notes: GENE_ASSOCIATION: (b0401 or (b2683 and b2682)) SUBSYSTEM: Transport, Inner Membrane EC Number:
kinetic law: 624152

624127
type: SpeciesReference
stoichiometry: 1.0
species: 575090

624115
type: SpeciesReference
stoichiometry: 1.0
species: 578180

578180
type: Species
notes: FORMULA: C5H11NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Valine

624103
type: SpeciesReference
stoichiometry: 1.0
species: 577887

624140
type: SpeciesReference
stoichiometry: 1.0
species: 576439

596478
type: LocalParameter
units: 456180
value: 0.0

596476
type: LocalParameter
units: 456180
value: 0.0

596475
type: LocalParameter
units: 456180
value: 1000.0

596473
type: LocalParameter
units: 456180
value: -1000.0

581024
type: Reaction
reactant: 575496
product: 575533
fast: false
kinetic law: 575545
reversible: false
name: Phosphatidate phosphatase (periplasmic, n-C14:0)
product: 575521
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
reactant: 575509

575496
type: SpeciesReference
stoichiometry: 1.0
species: 577890

575533
type: SpeciesReference
stoichiometry: 1.0
species: 578076

593597
type: LocalParameter
units: 456180
value: 0.0

593596
type: LocalParameter
units: 456180
value: 0.0

593594
type: LocalParameter
units: 456180
value: 1000.0

593593
type: LocalParameter
units: 456180
value: 0.0

575521
type: SpeciesReference
stoichiometry: 1.0
species: 577488

577488
type: Species
notes: FORMULA: C31H60O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)

575509
type: SpeciesReference
stoichiometry: 1.0
species: 578027

578027
type: Species
notes: FORMULA: C31H59O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-ditetradecanoyl-sn-glycerol 3-phosphate

580161
type: Reaction
kinetic law: 535843
product: 535831
reactant: 535819
notes: GENE_ASSOCIATION: (b1377 or b2215 or b0241 or b0929) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: GMP transport via diffusion (extracellular to periplasm)

589875
type: LocalParameter
units: 456180
value: 0.0

589873
type: LocalParameter
units: 456180
value: 0.0

589872
type: LocalParameter
units: 456180
value: 1000.0

589870
type: LocalParameter
units: 456180
value: -1000.0

535831
type: SpeciesReference
stoichiometry: 1.0
species: 577878

577878
type: Species
notes: FORMULA: C10H12N5O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: GMP

535819
type: SpeciesReference
stoichiometry: 1.0
species: 577023

577023
type: Species
notes: FORMULA: C10H12N5O8P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: GMP

581174
type: Reaction
reactant: 596977
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.32
name: Phospholipase A1 (phosphatidylethanolamine, n-C18:0) (periplasm)
kinetic law: 597025
fast: false
product: 597001
product: 596989
product: 597013
reversible: false
reactant: 596965

596977
type: SpeciesReference
stoichiometry: 1.0
species: 578045

578045
type: Species
notes: FORMULA: C41H82N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: phosphatidylethanolamine (dioctadecanoyl, n-C18:0)

594158
type: LocalParameter
units: 456180
value: 0.0

594157
type: LocalParameter
units: 456180
value: 0.0

594155
type: LocalParameter
units: 456180
value: 1000.0

594154
type: LocalParameter
units: 456180
value: 0.0

597001
type: SpeciesReference
stoichiometry: 1.0
species: 577887

596989
type: SpeciesReference
stoichiometry: 1.0
species: 577587

577587
type: Species
notes: FORMULA: C23H48NO7P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)

597013
type: SpeciesReference
stoichiometry: 1.0
species: 578018

578018
type: Species
notes: FORMULA: C18H35O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: octadecanoate (n-C18:0)

596965
type: SpeciesReference
stoichiometry: 1.0
species: 577890

580415
type: Reaction
notes: GENE_ASSOCIATION: (b3605 or (b0306 and b0307 and b0308)) SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.1.2.3
product: 547211
name: L-Lactate dehydrogenase (ubiquinone)
product: 547223
fast: false
kinetic law: 547235
reversible: false
reactant: 547199
reactant: 547186

547211
type: SpeciesReference
stoichiometry: 1.0
species: 575920

547223
type: SpeciesReference
stoichiometry: 1.0
species: 575926

590894
type: LocalParameter
units: 456180
value: 0.0

590892
type: LocalParameter
units: 456180
value: 0.0

590891
type: LocalParameter
units: 456180
value: 1000.0

590889
type: LocalParameter
units: 456180
value: 0.0

547199
type: SpeciesReference
stoichiometry: 1.0
species: 575923

547186
type: SpeciesReference
stoichiometry: 1.0
species: 575297

575297
type: Species
notes: FORMULA: C3H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Lactate

579940
type: Reaction
kinetic law: 524223
product: 524211
reactant: 524199
notes: GENE_ASSOCIATION: b4474 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
reversible: true
name: fructoselysine 3-epimerase

588830
type: LocalParameter
units: 456180
value: 0.0

588828
type: LocalParameter
units: 456180
value: 0.0

588827
type: LocalParameter
units: 456180
value: 1000.0

588825
type: LocalParameter
units: 456180
value: -1000.0

524211
type: SpeciesReference
stoichiometry: 1.0
species: 574847

524199
type: SpeciesReference
stoichiometry: 1.0
species: 575896

579034
type: Reaction
product: 481258
kinetic law: 481271
reversible: false
reactant: 481222
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase
fast: false
notes: GENE_ASSOCIATION: b0110 SUBSYSTEM: Murein Recycling EC Number:
reactant: 481234
product: 481246

481258
type: SpeciesReference
stoichiometry: 1.0
species: 574297

574297
type: Species
notes: FORMULA: C19H29N2O12 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid

585189
type: LocalParameter
units: 456180
value: 0.0

585188
type: LocalParameter
units: 456180
value: 0.0

585186
type: LocalParameter
units: 456180
value: 1000.0

585185
type: LocalParameter
units: 456180
value: 0.0

481222
type: SpeciesReference
stoichiometry: 1.0
species: 574299

574299
type: Species
notes: FORMULA: C34H52N6O19 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide

481234
type: SpeciesReference
stoichiometry: 1.0
species: 575099

481246
type: SpeciesReference
stoichiometry: 1.0
species: 574159

574159
type: Species
notes: FORMULA: C15H25N4O8 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate

576568
type: Species
notes: FORMULA: C2H4O CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Acetaldehyde

580200
type: Reaction
name: glutathione export via ABC system (cytoplasm to periplasm)
notes: GENE_ASSOCIATION: (b0886 and b0887) SUBSYSTEM: Transport, Inner Membrane EC Number:
reversible: false
product: 537603
fast: false
product: 537627
reactant: 537566
reactant: 537579
kinetic law: 537639
product: 537591
reactant: 537554
product: 537615

537603
type: SpeciesReference
stoichiometry: 1.0
species: 575090

537627
type: SpeciesReference
stoichiometry: 1.0
species: 577883

577883
type: Species
notes: FORMULA: C10H16N3O6S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Reduced glutathione

537566
type: SpeciesReference
stoichiometry: 1.0
species: 575078

537579
type: SpeciesReference
stoichiometry: 1.0
species: 575099

590021
type: LocalParameter
units: 456180
value: 0.0

590020
type: LocalParameter
units: 456180
value: 0.0

590017
type: LocalParameter
units: 456180
value: 1000.0

590016
type: LocalParameter
units: 456180
value: 0.0

537591
type: SpeciesReference
stoichiometry: 1.0
species: 574239

537554
type: SpeciesReference
stoichiometry: 1.0
species: 574373

537615
type: SpeciesReference
stoichiometry: 1.0
species: 575785

580074
type: Reaction
kinetic law: 531244
product: 531232
reactant: 531220
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-glucuronat transport via diffusion (extracellular to periplasm)

589484
type: LocalParameter
units: 456180
value: 0.0

589483
type: LocalParameter
units: 456180
value: 0.0

589481
type: LocalParameter
units: 456180
value: 1000.0

589480
type: LocalParameter
units: 456180
value: -1000.0

531232
type: SpeciesReference
stoichiometry: 1.0
species: 577860

577860
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: D-Glucuronate

531220
type: SpeciesReference
stoichiometry: 1.0
species: 576987

576987
type: Species
notes: FORMULA: C6H9O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Glucuronate

580444
type: Reaction
notes: GENE_ASSOCIATION: b2133 SUBSYSTEM: Oxidative Phosphorylation EC Number: 1.1.2.4
reactant: 548516
name: D-lactate dehydrogenase
reversible: false
product: 548528
fast: false
reactant: 548504
product: 548540
kinetic law: 548552

548516
type: SpeciesReference
stoichiometry: 1.0
species: 575923

548528
type: SpeciesReference
stoichiometry: 1.0
species: 575920

548504
type: SpeciesReference
stoichiometry: 1.0
species: 575294

548540
type: SpeciesReference
stoichiometry: 1.0
species: 575926

591016
type: LocalParameter
units: 456180
value: 0.0

591014
type: LocalParameter
units: 456180
value: 0.0

591013
type: LocalParameter
units: 456180
value: 1000.0

591011
type: LocalParameter
units: 456180
value: 0.0

581087
type: Reaction
reactant: 584910
kinetic law: 584984
reversible: false
product: 584946
fast: false
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 584897
product: 584959
product: 584971
reactant: 584922
product: 584934
name: phosphatidylglycerol transport via ABC system (n-C18:1, periplasm)

584910
type: SpeciesReference
stoichiometry: 1.0
species: 575099

593834
type: LocalParameter
units: 456180
value: 0.0

593832
type: LocalParameter
units: 456180
value: 0.0

593831
type: LocalParameter
units: 456180
value: 1000.0

593829
type: LocalParameter
units: 456180
value: 0.0

584946
type: SpeciesReference
stoichiometry: 1.0
species: 575090

584897
type: SpeciesReference
stoichiometry: 1.0
species: 574373

584959
type: SpeciesReference
stoichiometry: 1.0
species: 575785

584971
type: SpeciesReference
stoichiometry: 1.0
species: 578058

584922
type: SpeciesReference
stoichiometry: 1.0
species: 575734

584934
type: SpeciesReference
stoichiometry: 1.0
species: 574239

580530
type: Reaction
kinetic law: 552965
reactant: 552903
reversible: false
fast: false
product: 552939
reactant: 552915
product: 552927
name: Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:1)
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.5
product: 552952

591362
type: LocalParameter
units: 456180
value: 0.0

591361
type: LocalParameter
units: 456180
value: 0.0

591359
type: LocalParameter
units: 456180
value: 1000.0

591358
type: LocalParameter
units: 456180
value: 0.0

552903
type: SpeciesReference
stoichiometry: 1.0
species: 573836

552939
type: SpeciesReference
stoichiometry: 1.0
species: 575090

552915
type: SpeciesReference
stoichiometry: 1.0
species: 575099

552927
type: SpeciesReference
stoichiometry: 1.0
species: 574871

552952
type: SpeciesReference
stoichiometry: 1.0
species: 576307

576307
type: Species
notes: FORMULA: C14H25O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tetradecenoate (n-C14:1)

580113
type: Reaction
kinetic law: 533255
product: 533243
reactant: 533231
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: Glyceraldehyde transport via diffusion (extracellular to periplasm)

589649
type: LocalParameter
units: 456180
value: 0.0

589648
type: LocalParameter
units: 456180
value: 0.0

589646
type: LocalParameter
units: 456180
value: 1000.0

589645
type: LocalParameter
units: 456180
value: -1000.0

533243
type: SpeciesReference
stoichiometry: 1.0
species: 577868

533231
type: SpeciesReference
stoichiometry: 1.0
species: 577002

577826
type: Species
notes: FORMULA: C31H48O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: fusidic acid

580680
type: Reaction
reversible: false
fast: false
name: murein L,D-carboxypeptidase (murein5px4p) (periplasm)
reactant: 559660
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.17.13
product: 559697
product: 559685
kinetic law: 559709
reactant: 559673

559660
type: SpeciesReference
stoichiometry: 1.0
species: 577890

559697
type: SpeciesReference
stoichiometry: 1.0
species: 577973

577973
type: Species
notes: FORMULA: C71H107N13O38 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)

559685
type: SpeciesReference
stoichiometry: 1.0
species: 577667

591990
type: LocalParameter
units: 456180
value: 0.0

591989
type: LocalParameter
units: 456180
value: 0.0

591987
type: LocalParameter
units: 456180
value: 1000.0

591986
type: LocalParameter
units: 456180
value: 0.0

559673
type: SpeciesReference
stoichiometry: 1.0
species: 577989

580443
type: Reaction
name: D-lactate dehydrogenase
product: 548456
fast: false
kinetic law: 548492
reversible: true
product: 548480
product: 548468
notes: GENE_ASSOCIATION: (b2133 or b1380) SUBSYSTEM: Pyruvate Metabolism EC Number: 1.1.1.28
reactant: 548444
reactant: 548432

548456
type: SpeciesReference
stoichiometry: 1.0
species: 575090

591010
type: LocalParameter
units: 456180
value: 0.0

591009
type: LocalParameter
units: 456180
value: 0.0

591007
type: LocalParameter
units: 456180
value: 1000.0

591006
type: LocalParameter
units: 456180
value: -1000.0

548480
type: SpeciesReference
stoichiometry: 1.0
species: 575920

548468
type: SpeciesReference
stoichiometry: 1.0
species: 575522

548444
type: SpeciesReference
stoichiometry: 1.0
species: 575519

548432
type: SpeciesReference
stoichiometry: 1.0
species: 575294

581330
type: Reaction
fast: false
kinetic law: 603991
notes: GENE_ASSOCIATION: b2585 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.7.8.8
name: Phosphatidylserine syntase (n-C18:1)
product: 603967
reversible: false
product: 603955
product: 603979
reactant: 603931
reactant: 603943

594736
type: LocalParameter
units: 456180
value: 0.0

594734
type: LocalParameter
units: 456180
value: 0.0

594733
type: LocalParameter
units: 456180
value: 1000.0

594731
type: LocalParameter
units: 456180
value: 0.0

603967
type: SpeciesReference
stoichiometry: 1.0
species: 575090

603955
type: SpeciesReference
stoichiometry: 1.0
species: 574474

603979
type: SpeciesReference
stoichiometry: 1.0
species: 575893

575893
type: Species
notes: FORMULA: C42H77N1O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylserine (dioctadec-11-enoyl, n-C18:1)

603931
type: SpeciesReference
stoichiometry: 1.0
species: 574443

574443
type: Species
notes: FORMULA: C48H83N3O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: CDP-1,2-dioctadec-11-enoylglycerol

603943
type: SpeciesReference
stoichiometry: 1.0
species: 576016

580593
type: Reaction
product: 556062
product: 556074
reactant: 556038
notes: GENE_ASSOCIATION: b4323 SUBSYSTEM: Alternate Carbon Metabolism EC Number: 1.1.1.57
reactant: 556050
product: 556086
reversible: true
kinetic law: 556098
name: Mannonate oxidoreductase
fast: false

556062
type: SpeciesReference
stoichiometry: 1.0
species: 574853

556074
type: SpeciesReference
stoichiometry: 1.0
species: 575090

556038
type: SpeciesReference
stoichiometry: 1.0
species: 575399

575399
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannonate

556050
type: SpeciesReference
stoichiometry: 1.0
species: 575519

556086
type: SpeciesReference
stoichiometry: 1.0
species: 575522

591632
type: LocalParameter
units: 456180
value: 0.0

591630
type: LocalParameter
units: 456180
value: 0.0

591629
type: LocalParameter
units: 456180
value: 1000.0

591627
type: LocalParameter
units: 456180
value: -1000.0

579815
type: Reaction
product: 517408
product: 517420
reactant: 517370
product: 517396
fast: false
kinetic law: 517444
name: fatty-acid-CoA ligase (tetradecenoate transport via vectoral Co-A coupling)
product: 517432
reversible: false
reactant: 517346
reactant: 517358
reactant: 517383
notes: GENE_ASSOCIATION: (b1701 or b1805) SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 6.2.1.3

517408
type: SpeciesReference
stoichiometry: 1.0
species: 575090

517420
type: SpeciesReference
stoichiometry: 1.0
species: 575824

517370
type: SpeciesReference
stoichiometry: 1.0
species: 577887

517396
type: SpeciesReference
stoichiometry: 1.0
species: 574295

588313
type: LocalParameter
units: 456180
value: 0.0

588311
type: LocalParameter
units: 456180
value: 0.0

588310
type: LocalParameter
units: 456180
value: 1000.0

588308
type: LocalParameter
units: 456180
value: 0.0

517432
type: SpeciesReference
stoichiometry: 1.0
species: 576160

576160
type: Species
notes: FORMULA: C35H56N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Tetradecenoyl-CoA (n-C14:1CoA)

517346
type: SpeciesReference
stoichiometry: 1.0
species: 574373

517358
type: SpeciesReference
stoichiometry: 1.0
species: 574478

517383
type: SpeciesReference
stoichiometry: 1.0
species: 578151

578151
type: Species
notes: FORMULA: C14H25O2 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: tetradecenoate (n-C14:1)

581463
type: Reaction
kinetic law: 609735
product: 609723
reactant: 609711
notes: GENE_ASSOCIATION: (b0241 or b0929 or b1377 or b2215) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: D-sorbitol transport via diffusion (extracellular to periplasm)

595203
type: LocalParameter
units: 456180
value: 0.0

595202
type: LocalParameter
units: 456180
value: 0.0

595200
type: LocalParameter
units: 456180
value: 1000.0

595199
type: LocalParameter
units: 456180
value: -1000.0

609723
type: SpeciesReference
stoichiometry: 1.0
species: 578109

609711
type: SpeciesReference
stoichiometry: 1.0
species: 577335

577335
type: Species
notes: FORMULA: C6H14O6 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: D-Sorbitol

580710
type: Reaction
kinetic law: 560822
name: S-methylmethionine permease (periplasm)
reactant: 560786
product: 560810
reactant: 560773
product: 560798
fast: false
reversible: false
notes: GENE_ASSOCIATION: b0260 SUBSYSTEM: Transport, Inner Membrane EC Number:

592116
type: LocalParameter
units: 456180
value: 0.0

592115
type: LocalParameter
units: 456180
value: 0.0

592112
type: LocalParameter
units: 456180
value: 1000.0

592111
type: LocalParameter
units: 456180
value: 0.0

560786
type: SpeciesReference
stoichiometry: 1.0
species: 577962

577962
type: Species
notes: FORMULA: C6H14NO2S CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: S-Methyl-L-methionine

560810
type: SpeciesReference
stoichiometry: 1.0
species: 575447

560773
type: SpeciesReference
stoichiometry: 1.0
species: 577887

560798
type: SpeciesReference
stoichiometry: 1.0
species: 575090

577789
type: Species
notes: FORMULA: C151H234N12O67P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: (enterobacterial common antigen)x4 undecaprenyl-diphosphate

579273
type: Reaction
product: 493016
reactant: 492980
reactant: 492956
kinetic law: 493028
fast: false
reversible: false
reactant: 492968
name: Biotin sulfoxide reductase
product: 493004
product: 492992
notes: GENE_ASSOCIATION: b3551 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:

493016
type: SpeciesReference
stoichiometry: 1.0
species: 575519

492980
type: SpeciesReference
stoichiometry: 1.0
species: 575522

492956
type: SpeciesReference
stoichiometry: 1.0
species: 574395

574395
type: Species
notes: FORMULA: C10H15N2O4S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: d-biotin d-sulfoxide

586199
type: LocalParameter
units: 456180
value: 0.0

586198
type: LocalParameter
units: 456180
value: 0.0

586196
type: LocalParameter
units: 456180
value: 1000.0

586195
type: LocalParameter
units: 456180
value: 0.0

492968
type: SpeciesReference
stoichiometry: 1.0
species: 575090

493004
type: SpeciesReference
stoichiometry: 1.0
species: 575099

492992
type: SpeciesReference
stoichiometry: 1.0
species: 574393

574393
type: Species
notes: FORMULA: C10H15N2O3S CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Biotin

574283
type: Species
notes: FORMULA: C4H7N4O4 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Allantoate

580623
type: Reaction
kinetic law: 557211
product: 557199
reactant: 557187
reactant: 557175
notes: GENE_ASSOCIATION: (b3182 or b2328 or b2134) SUBSYSTEM: Murein Recycling EC Number:
fast: false
reversible: false
name: murein D,D-endopeptidase (murein3px4p) (periplasm)

591743
type: LocalParameter
units: 456180
value: 0.0

591741
type: LocalParameter
units: 456180
value: 0.0

591740
type: LocalParameter
units: 456180
value: 1000.0

591738
type: LocalParameter
units: 456180
value: 0.0

557199
type: SpeciesReference
stoichiometry: 1.0
species: 577974

557187
type: SpeciesReference
stoichiometry: 1.0
species: 577973

557175
type: SpeciesReference
stoichiometry: 1.0
species: 577890

581265
type: Reaction
product: 601082
fast: false
kinetic law: 601106
reversible: false
notes: GENE_ASSOCIATION: b3850 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number: 1.3.3.4
reactant: 601070
name: protoporphyrinogen oxidase (anaerobic)
product: 601094
reactant: 601058

601082
type: SpeciesReference
stoichiometry: 1.0
species: 575827

575827
type: Species
notes: FORMULA: C34H32N4O4 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Protoporphyrin

594494
type: LocalParameter
units: 456180
value: 0.0

594492
type: LocalParameter
units: 456180
value: 0.0

594491
type: LocalParameter
units: 456180
value: 1000.0

594489
type: LocalParameter
units: 456180
value: 0.0

601070
type: SpeciesReference
stoichiometry: 1.0
species: 575830

601094
type: SpeciesReference
stoichiometry: 3.0
species: 576070

601058
type: SpeciesReference
stoichiometry: 3.0
species: 574859

580352
type: Reaction
reactant: 544161
kinetic law: 544221
product: 544209
product: 544197
reactant: 544185
reversible: true
name: L-idonate 5-dehydrogenase
notes: GENE_ASSOCIATION: b4267 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
reactant: 544173

544161
type: SpeciesReference
stoichiometry: 1.0
species: 574128

590635
type: LocalParameter
units: 456180
value: 0.0

590634
type: LocalParameter
units: 456180
value: 0.0

590632
type: LocalParameter
units: 456180
value: 1000.0

590631
type: LocalParameter
units: 456180
value: -1000.0

544209
type: SpeciesReference
stoichiometry: 1.0
species: 575519

544197
type: SpeciesReference
stoichiometry: 1.0
species: 575216

575216
type: Species
notes: FORMULA: C6H11O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Idonate

544185
type: SpeciesReference
stoichiometry: 1.0
species: 575522

544173
type: SpeciesReference
stoichiometry: 1.0
species: 575090

578097
type: Species
notes: FORMULA: C8H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Pyridoxal

581522
type: Reaction
kinetic law: 612199
notes: GENE_ASSOCIATION: b1748 SUBSYSTEM: Arginine and Proline Metabolism EC Number:
reactant: 612151
fast: false
name: Succinylornithine transaminase
product: 612175
reversible: false
reactant: 612163
product: 612188

595439
type: LocalParameter
units: 456180
value: 0.0

595437
type: LocalParameter
units: 456180
value: 0.0

595436
type: LocalParameter
units: 456180
value: 1000.0

595434
type: LocalParameter
units: 456180
value: 0.0

612151
type: SpeciesReference
stoichiometry: 1.0
species: 574263

612175
type: SpeciesReference
stoichiometry: 1.0
species: 574991

612163
type: SpeciesReference
stoichiometry: 1.0
species: 576085

612188
type: SpeciesReference
stoichiometry: 1.0
species: 576079

576079
type: Species
notes: FORMULA: C9H11NO6 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: N2-Succinyl-L-glutamate 5-semialdehyde

581178
type: Reaction
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.1.32
product: 597222
name: Phospholipase A1 (phosphatidylglycerol, n-C14:0) (periplasm)
reversible: false
fast: false
product: 597209
kinetic law: 597246
product: 597234
reactant: 597185
reactant: 597197

597222
type: SpeciesReference
stoichiometry: 1.0
species: 577887

597209
type: SpeciesReference
stoichiometry: 1.0
species: 577592

594175
type: LocalParameter
units: 456180
value: 0.0

594173
type: LocalParameter
units: 456180
value: 0.0

594172
type: LocalParameter
units: 456180
value: 1000.0

594170
type: LocalParameter
units: 456180
value: 0.0

597234
type: SpeciesReference
stoichiometry: 1.0
species: 578150

597185
type: SpeciesReference
stoichiometry: 1.0
species: 577890

597197
type: SpeciesReference
stoichiometry: 1.0
species: 578051

580265
type: Reaction
product: 540256
product: 540244
notes: GENE_ASSOCIATION: b3630 SUBSYSTEM: Lipopolysaccharide Biosynthesis / Recycling EC Number:
fast: false
reactant: 540219
reactant: 540207
reversible: false
product: 540232
kinetic law: 540268
name: LPS heptose kinase I (LPS core synthesis)

540256
type: SpeciesReference
stoichiometry: 1.0
species: 575770

575770
type: Species
notes: FORMULA: C124H219N2O54P3 CHARGE: -8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phospho-heptosyl-heptosyl-kdo2-lipidA

540244
type: SpeciesReference
stoichiometry: 1.0
species: 575090

540219
type: SpeciesReference
stoichiometry: 1.0
species: 575147

575147
type: Species
notes: FORMULA: C124H220N2O51P2 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: heptosyl-heptosyl-kdo2-lipidA

540207
type: SpeciesReference
stoichiometry: 1.0
species: 574373

540232
type: SpeciesReference
stoichiometry: 1.0
species: 574239

590300
type: LocalParameter
units: 456180
value: 0.0

590298
type: LocalParameter
units: 456180
value: 0.0

590297
type: LocalParameter
units: 456180
value: 1000.0

590295
type: LocalParameter
units: 456180
value: 0.0

581435
type: Reaction
name: ribonucleoside-triphosphate reductase (ATP) (flavodoxin)
product: 608206
reactant: 608158
product: 608182
reactant: 608170
reversible: false
kinetic law: 608219
fast: false
reactant: 608146
product: 608194
notes: GENE_ASSOCIATION: ((b0684 and b3924 and b4238 and b4237) or (b2895 and b3924 and b4238 and b4237) or (b0684 and b4238) or (b2895 and b4238)) SUBSYSTEM: Nucleotide Salvage Pathway EC Number:

608206
type: SpeciesReference
stoichiometry: 1.0
species: 575099

608158
type: SpeciesReference
stoichiometry: 2.0
species: 574814

574814
type: Species
notes: FORMULA: XH CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Flavodoxin reduced

608182
type: SpeciesReference
stoichiometry: 1.0
species: 574550

608170
type: SpeciesReference
stoichiometry: 2.0
species: 575090

595106
type: LocalParameter
units: 456180
value: 0.0

595105
type: LocalParameter
units: 456180
value: 0.0

595104
type: LocalParameter
units: 456180
value: 1000.0

595103
type: LocalParameter
units: 456180
value: 0.0

608146
type: SpeciesReference
stoichiometry: 1.0
species: 574373

608194
type: SpeciesReference
stoichiometry: 2.0
species: 574817

574817
type: Species
notes: FORMULA: XH CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: flavodoxin semi oxidized

581231
type: Reaction
name: pyruvate synthase
product: 599667
reversible: true
fast: false
kinetic law: 599703
reactant: 599619
product: 599691
reactant: 599631
product: 599679
product: 599655
reactant: 599643
notes: GENE_ASSOCIATION: ((b0684 and b1378) or (b2895 and b1378)) SUBSYSTEM: Pyruvate Metabolism EC Number: 1.2.7.1

599667
type: SpeciesReference
stoichiometry: 1.0
species: 574476

594367
type: LocalParameter
units: 456180
value: 0.0

594366
type: LocalParameter
units: 456180
value: 0.0

594364
type: LocalParameter
units: 456180
value: 1000.0

594363
type: LocalParameter
units: 456180
value: -1000.0

599619
type: SpeciesReference
stoichiometry: 1.0
species: 574478

599691
type: SpeciesReference
stoichiometry: 1.0
species: 575090

599631
type: SpeciesReference
stoichiometry: 2.0
species: 574817

599679
type: SpeciesReference
stoichiometry: 2.0
species: 574814

599655
type: SpeciesReference
stoichiometry: 1.0
species: 574187

599643
type: SpeciesReference
stoichiometry: 1.0
species: 575920

579106
type: Reaction
kinetic law: 484673
product: 484661
reactant: 484649
notes: GENE_ASSOCIATION: b4090 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
reversible: true
name: Allose 6-phosphate isomerase

585486
type: LocalParameter
units: 456180
value: 0.0

585485
type: LocalParameter
units: 456180
value: 0.0

585483
type: LocalParameter
units: 456180
value: 1000.0

585482
type: LocalParameter
units: 456180
value: -1000.0

484661
type: SpeciesReference
stoichiometry: 1.0
species: 574285

574285
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Allulose 6-phosphate

484649
type: SpeciesReference
stoichiometry: 1.0
species: 574279

574279
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Allose 6-phosphate

581364
type: Reaction
kinetic law: 605402
product: 605390
reactant: 605378
notes: GENE_ASSOCIATION: (b2215 or b0929 or b1377 or b0241) SUBSYSTEM: Transport, Outer Membrane Porin EC Number:
fast: false
reversible: true
name: pyridoxine transport via diffusion (extracellular)

594862
type: LocalParameter
units: 456180
value: 0.0

594860
type: LocalParameter
units: 456180
value: 0.0

594859
type: LocalParameter
units: 456180
value: 1000.0

594857
type: LocalParameter
units: 456180
value: -1000.0

605390
type: SpeciesReference
stoichiometry: 1.0
species: 578099

578099
type: Species
notes: FORMULA: C8H11NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Pyridoxine

605378
type: SpeciesReference
stoichiometry: 1.0
species: 577314

577314
type: Species
notes: FORMULA: C8H11NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Pyridoxine

579245
type: Reaction
reactant: 491527
notes: GENE_ASSOCIATION: (b0655 and b0654 and b0653 and b0652) SUBSYSTEM: Transport, Inner Membrane EC Number:
reactant: 491539
kinetic law: 491612
reactant: 491551
product: 491588
fast: false
product: 491576
reversible: false
product: 491600
product: 491564
name: L-aspartate transport via ABC system (periplasm)

491527
type: SpeciesReference
stoichiometry: 1.0
species: 574373

491539
type: SpeciesReference
stoichiometry: 1.0
species: 575099

586084
type: LocalParameter
units: 456180
value: 0.0

586082
type: LocalParameter
units: 456180
value: 0.0

586081
type: LocalParameter
units: 456180
value: 1000.0

586079
type: LocalParameter
units: 456180
value: 0.0

491551
type: SpeciesReference
stoichiometry: 1.0
species: 577691

491588
type: SpeciesReference
stoichiometry: 1.0
species: 575090

491576
type: SpeciesReference
stoichiometry: 1.0
species: 574363

491600
type: SpeciesReference
stoichiometry: 1.0
species: 575785

491564
type: SpeciesReference
stoichiometry: 1.0
species: 574239

579174
type: Reaction
product: 487959
product: 487971
kinetic law: 487995
name: acylphosphatase (C18:0)
product: 487983
reversible: false
reactant: 487935
reactant: 487947
fast: false
notes: GENE_ASSOCIATION: b0968 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.6.1.7

487959
type: SpeciesReference
stoichiometry: 2.0
species: 575090

487971
type: SpeciesReference
stoichiometry: 1.0
species: 575576

585767
type: LocalParameter
units: 456180
value: 0.0

585765
type: LocalParameter
units: 456180
value: 0.0

585764
type: LocalParameter
units: 456180
value: 1000.0

585762
type: LocalParameter
units: 456180
value: 0.0

487983
type: SpeciesReference
stoichiometry: 1.0
species: 575785

487935
type: SpeciesReference
stoichiometry: 1.0
species: 575099

487947
type: SpeciesReference
stoichiometry: 1.0
species: 575582

575582
type: Species
notes: FORMULA: C18H36O5P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Octadecanoyl-phosphate (n-C18:0)

580598
type: Reaction
reactant: 556220
product: 556245
kinetic law: 556257
reactant: 556208
name: 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase
reversible: false
notes: GENE_ASSOCIATION: b0732 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false
product: 556232

556220
type: SpeciesReference
stoichiometry: 1.0
species: 575396

556245
type: SpeciesReference
stoichiometry: 1.0
species: 575393

575393
type: Species
notes: FORMULA: C6H11O9P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: D-Mannose 6-phosphate

591648
type: LocalParameter
units: 456180
value: 0.0

591647
type: LocalParameter
units: 456180
value: 0.0

591645
type: LocalParameter
units: 456180
value: 1000.0

591644
type: LocalParameter
units: 456180
value: 0.0

556208
type: SpeciesReference
stoichiometry: 1.0
species: 575099

556232
type: SpeciesReference
stoichiometry: 1.0
species: 575024

579019
type: Reaction
name: Adenosyl cobinamide kinase
product: 480497
notes: GENE_ASSOCIATION: b1993 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 480510
reversible: false
reactant: 480461
fast: false
kinetic law: 480522
product: 480485
reactant: 480473

480497
type: SpeciesReference
stoichiometry: 1.0
species: 574239

480510
type: SpeciesReference
stoichiometry: 1.0
species: 575090

480461
type: SpeciesReference
stoichiometry: 1.0
species: 574233

574233
type: Species
notes: FORMULA: C58H84CoN16O11 CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Adenosyl cobinamide

585129
type: LocalParameter
units: 456180
value: 0.0

585126
type: LocalParameter
units: 456180
value: 0.0

585125
type: LocalParameter
units: 456180
value: 1000.0

585123
type: LocalParameter
units: 456180
value: 0.0

480485
type: SpeciesReference
stoichiometry: 1.0
species: 574235

574235
type: Species
notes: FORMULA: C58H83CoN16O14P CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Adenosyl cobinamide phosphate

480473
type: SpeciesReference
stoichiometry: 1.0
species: 574373

579967
type: Reaction
notes: GENE_ASSOCIATION: b4055 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
name: glycerol 2-phosphate phosphatase (periplasmic)
reactant: 525570
reversible: false
fast: false
kinetic law: 525606
product: 525594
product: 525582
reactant: 525558

525570
type: SpeciesReference
stoichiometry: 1.0
species: 577890

588967
type: LocalParameter
units: 456180
value: 0.0

588966
type: LocalParameter
units: 456180
value: 0.0

588964
type: LocalParameter
units: 456180
value: 1000.0

588963
type: LocalParameter
units: 456180
value: 0.0

525594
type: SpeciesReference
stoichiometry: 1.0
species: 578076

525582
type: SpeciesReference
stoichiometry: 1.0
species: 577871

525558
type: SpeciesReference
stoichiometry: 1.0
species: 577874

577874
type: Species
notes: FORMULA: C3H7O6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Glycerol 2-phosphate

577113
type: Species
notes: FORMULA: C3H5O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: L-Lactate

579158
type: Reaction
product: 487090
notes: GENE_ASSOCIATION: b3059 SUBSYSTEM: Glycerophospholipid Metabolism EC Number:
name: acyl-phosphate:glycerol-3-phosphate acyltransferase (C12:0)
product: 487102
reactant: 487054
reactant: 487066
fast: false
product: 487078
reversible: false
kinetic law: 487114

487090
type: SpeciesReference
stoichiometry: 1.0
species: 575090

487102
type: SpeciesReference
stoichiometry: 1.0
species: 575785

487054
type: SpeciesReference
stoichiometry: 1.0
species: 574586

487066
type: SpeciesReference
stoichiometry: 1.0
species: 575030

487078
type: SpeciesReference
stoichiometry: 1.0
species: 573786

573786
type: Species
notes: FORMULA: C15H29O7P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 1-dodecanoyl-sn-glycerol 3-phosphate

585701
type: LocalParameter
units: 456180
value: 0.0

585699
type: LocalParameter
units: 456180
value: 0.0

585698
type: LocalParameter
units: 456180
value: 1000.0

585696
type: LocalParameter
units: 456180
value: 0.0

579087
type: Reaction
reversible: false
product: 483669
fast: false
notes: GENE_ASSOCIATION: b2697 SUBSYSTEM: tRNA Charging EC Number: 6.1.1.7
reactant: 483608
reactant: 483620
product: 483644
name: Alanyl-tRNA synthetase
kinetic law: 483681
product: 483657
reactant: 483632

483669
type: SpeciesReference
stoichiometry: 1.0
species: 575824

483608
type: SpeciesReference
stoichiometry: 1.0
species: 574269

574269
type: Species
notes: FORMULA: C3H7NO2 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Alanine

483620
type: SpeciesReference
stoichiometry: 1.0
species: 574373

483644
type: SpeciesReference
stoichiometry: 1.0
species: 574275

574275
type: Species
notes: FORMULA: C3H6NOR CHARGE: 1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Alanyl-tRNA(Ala)

585409
type: LocalParameter
units: 456180
value: 0.0

585408
type: LocalParameter
units: 456180
value: 0.0

585406
type: LocalParameter
units: 456180
value: 1000.0

585405
type: LocalParameter
units: 456180
value: 0.0

483657
type: SpeciesReference
stoichiometry: 1.0
species: 574295

483632
type: SpeciesReference
stoichiometry: 1.0
species: 576229

576229
type: Species
notes: FORMULA: R CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: tRNA(Ala)

574355
type: Species
notes: FORMULA: C4H8N2O3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: L-Asparagine

581334
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: b4055 SUBSYSTEM: Threonine and Lysine Metabolism EC Number:
reactant: 604136
product: 604148
kinetic law: 604172
reactant: 604124
product: 604160
name: phospho-L-threonine phosphatase (periplasmic)
fast: false

604136
type: SpeciesReference
stoichiometry: 1.0
species: 578138

578138
type: Species
notes: FORMULA: C4H8NO6P CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Threonine O-3-phosphate

604148
type: SpeciesReference
stoichiometry: 1.0
species: 578076

594752
type: LocalParameter
units: 456180
value: 0.0

594751
type: LocalParameter
units: 456180
value: 0.0

594749
type: LocalParameter
units: 456180
value: 1000.0

594748
type: LocalParameter
units: 456180
value: 0.0

604124
type: SpeciesReference
stoichiometry: 1.0
species: 577890

604160
type: SpeciesReference
stoichiometry: 1.0
species: 578136

578136
type: Species
notes: FORMULA: C4H9NO3 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: L-Threonine

580166
type: Reaction
reactant: 536013
fast: false
reversible: false
name: GDP-4-oxo-L-fucose reductase
product: 536037
notes: GENE_ASSOCIATION: b2052 SUBSYSTEM: Cell Envelope Biosynthesis EC Number:
kinetic law: 536061
reactant: 536001
reactant: 536025
product: 536049

536013
type: SpeciesReference
stoichiometry: 1.0
species: 575090

536037
type: SpeciesReference
stoichiometry: 1.0
species: 574934

574934
type: Species
notes: FORMULA: C16H23N5O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP-L-fucose

589891
type: LocalParameter
units: 456180
value: 0.0

589890
type: LocalParameter
units: 456180
value: 0.0

589888
type: LocalParameter
units: 456180
value: 1000.0

589887
type: LocalParameter
units: 456180
value: 0.0

536001
type: SpeciesReference
stoichiometry: 1.0
species: 574940

574940
type: Species
notes: FORMULA: C16H21N5O15P2 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: GDP-4-oxo-L-fucose

536025
type: SpeciesReference
stoichiometry: 1.0
species: 575528

536049
type: SpeciesReference
stoichiometry: 1.0
species: 575525

578825
type: Reaction
reactant: 471270
reversible: true
kinetic law: 471331
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)
fast: false
product: 471319
product: 471307
reactant: 471295
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis EC Number: 1.1.1.100
reactant: 471282

471270
type: SpeciesReference
stoichiometry: 1.0
species: 574040

574040
type: Species
notes: FORMULA: C23H41N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxododecanoyl-[acyl-carrier protein]

584092
type: LocalParameter
units: 456180
value: 0.0

584090
type: LocalParameter
units: 456180
value: 0.0

584089
type: LocalParameter
units: 456180
value: 1000.0

584087
type: LocalParameter
units: 456180
value: -1000.0

471319
type: SpeciesReference
stoichiometry: 1.0
species: 575525

471307
type: SpeciesReference
stoichiometry: 1.0
species: 573993

471295
type: SpeciesReference
stoichiometry: 1.0
species: 575528

471282
type: SpeciesReference
stoichiometry: 1.0
species: 575090

579333
type: Reaction
reactant: 496145
product: 496181
kinetic law: 496206
reactant: 496157
product: 496169
notes: GENE_ASSOCIATION: b1661 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.1.1.79
reversible: false
fast: false
name: cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)
product: 496193

496145
type: SpeciesReference
stoichiometry: 2.0
species: 574289

496181
type: SpeciesReference
stoichiometry: 1.0
species: 574490

574490
type: Species
notes: FORMULA: C44H82O10P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: cyclopropane phosphatidylglycerol (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)

586447
type: LocalParameter
units: 456180
value: 0.0

586445
type: LocalParameter
units: 456180
value: 0.0

586444
type: LocalParameter
units: 456180
value: 1000.0

586442
type: LocalParameter
units: 456180
value: 0.0

496157
type: SpeciesReference
stoichiometry: 1.0
species: 575734

496169
type: SpeciesReference
stoichiometry: 2.0
species: 574255

496193
type: SpeciesReference
stoichiometry: 2.0
species: 575090

581307
type: Reaction
reactant: 602990
reactant: 602978
fast: false
notes: GENE_ASSOCIATION: b4160 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 4.1.1.65
name: Phosphatidylserine decarboxylase (n-C14:1)
kinetic law: 603027
product: 603014
reversible: false
product: 603002

602990
type: SpeciesReference
stoichiometry: 1.0
species: 575881

602978
type: SpeciesReference
stoichiometry: 1.0
species: 575090

594653
type: LocalParameter
units: 456180
value: 0.0

594652
type: LocalParameter
units: 456180
value: 0.0

594650
type: LocalParameter
units: 456180
value: 1000.0

594649
type: LocalParameter
units: 456180
value: 0.0

603014
type: SpeciesReference
stoichiometry: 1.0
species: 575696

575696
type: Species
notes: FORMULA: C33H62N1O8P1 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)

603002
type: SpeciesReference
stoichiometry: 1.0
species: 574476

574050
type: Species
notes: FORMULA: C25H45N2O9PRS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 3-Oxotetradecanoyl-[acyl-carrier protein]

578975
type: Reaction
kinetic law: 478519
product: 478507
product: 478495
reactant: 478483
notes: GENE_ASSOCIATION: (b0118 or b1276) SUBSYSTEM: Citric Acid Cycle EC Number: 4.2.1.3
fast: false
reversible: true
name: aconitase (half-reaction A, Citrate hydro-lyase)

584708
type: LocalParameter
units: 456180
value: 0.0

584707
type: LocalParameter
units: 456180
value: 0.0

584705
type: LocalParameter
units: 456180
value: 1000.0

584704
type: LocalParameter
units: 456180
value: -1000.0

478507
type: SpeciesReference
stoichiometry: 1.0
species: 575099

478495
type: SpeciesReference
stoichiometry: 1.0
species: 574215

478483
type: SpeciesReference
stoichiometry: 1.0
species: 574466

574466
type: Species
notes: FORMULA: C6H5O7 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Citrate

578769
type: Reaction
reactant: 469010
product: 469058
reactant: 468998
product: 469046
fast: false
notes: GENE_ASSOCIATION: b2836 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 2.3.1.40
product: 469034
reactant: 469022
name: 2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1)
reversible: false
kinetic law: 469071

469010
type: SpeciesReference
stoichiometry: 1.0
species: 574373

469058
type: SpeciesReference
stoichiometry: 1.0
species: 575824

468998
type: SpeciesReference
stoichiometry: 1.0
species: 573850

573850
type: Species
notes: FORMULA: C20H38O9P1 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)

469046
type: SpeciesReference
stoichiometry: 1.0
species: 575720

469034
type: SpeciesReference
stoichiometry: 1.0
species: 574295

469022
type: SpeciesReference
stoichiometry: 1.0
species: 576307

583889
type: LocalParameter
units: 456180
value: 0.0

583887
type: LocalParameter
units: 456180
value: 0.0

583886
type: LocalParameter
units: 456180
value: 1000.0

583884
type: LocalParameter
units: 456180
value: 0.0

576873
type: Species
notes: FORMULA: C12H10FeO14 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Fe(III)dicitrate

574584
type: Species
notes: FORMULA: C33H54N7O17P3S CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: Dodecanoyl-CoA (n-C12:0CoA)

580803
type: Reaction
product: 564901
reversible: true
product: 564889
reactant: 564865
notes: GENE_ASSOCIATION: (b2518 or b0474) SUBSYSTEM: Nucleotide Salvage Pathway EC Number: 2.7.4.6
reactant: 564877
fast: false
kinetic law: 564913
name: nucleoside-diphosphate kinase (ATP:CDP)

564901
type: SpeciesReference
stoichiometry: 1.0
species: 574519

564889
type: SpeciesReference
stoichiometry: 1.0
species: 574239

564865
type: SpeciesReference
stoichiometry: 1.0
species: 574373

564877
type: SpeciesReference
stoichiometry: 1.0
species: 574435

592557
type: LocalParameter
units: 456180
value: 0.0

592556
type: LocalParameter
units: 456180
value: 0.0

592553
type: LocalParameter
units: 456180
value: 1000.0

592552
type: LocalParameter
units: 456180
value: -1000.0

581030
type: Reaction
fast: false
reactant: 575799
name: Phosphatidate phosphatase (periplasmic, n-C16:0)
reversible: false
product: 575811
kinetic law: 575835
product: 575823
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism EC Number: 3.1.3.4
reactant: 575787

575799
type: SpeciesReference
stoichiometry: 1.0
species: 578030

578030
type: Species
notes: FORMULA: C35H67O8P1 CHARGE: -2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-dihexadecanoyl-sn-glycerol 3-phosphate

575811
type: SpeciesReference
stoichiometry: 1.0
species: 577494

577494
type: Species
notes: FORMULA: C35H68O5 CHARGE: 0
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: 1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)

593619
type: LocalParameter
units: 456180
value: 0.0

593618
type: LocalParameter
units: 456180
value: 0.0

593616
type: LocalParameter
units: 456180
value: 1000.0

593615
type: LocalParameter
units: 456180
value: 0.0

575823
type: SpeciesReference
stoichiometry: 1.0
species: 578076

575787
type: SpeciesReference
stoichiometry: 1.0
species: 577890

581235
type: Reaction
kinetic law: 599922
reversible: false
name: inorganic triphosphatase
fast: false
product: 599898
notes: GENE_ASSOCIATION: (b2502 or b2744) SUBSYSTEM: Anaplerotic Reactions EC Number: 3.6.1.1
reactant: 599861
reactant: 599873
product: 599910
product: 599886

594384
type: LocalParameter
units: 456180
value: 0.0

594382
type: LocalParameter
units: 456180
value: 0.0

594381
type: LocalParameter
units: 456180
value: 1000.0

594379
type: LocalParameter
units: 456180
value: 0.0

599898
type: SpeciesReference
stoichiometry: 1.0
species: 575785

599861
type: SpeciesReference
stoichiometry: 1.0
species: 575099

599873
type: SpeciesReference
stoichiometry: 1.0
species: 575833

599910
type: SpeciesReference
stoichiometry: 1.0
species: 575824

599886
type: SpeciesReference
stoichiometry: 1.0
species: 575090

578456
type: Reaction
kinetic law: 462677
reactant: 462665
notes: GENE_ASSOCIATION: SUBSYSTEM: EC Number:
fast: false
reversible: true
name: Glycolate exchange

582735
type: LocalParameter
units: 456180
value: 0.0

582734
type: LocalParameter
units: 456180
value: 0.0

582733
type: LocalParameter
units: 456180
value: 1000.0

582732
type: LocalParameter
units: 456180
value: 0.0

462665
type: SpeciesReference
stoichiometry: 1.0
species: 577020

577020
type: Species
notes: FORMULA: C2H3O3 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573753
name: Glycolate

580703
type: Reaction
kinetic law: 560517
product: 560505
product: 560493
reactant: 560481
notes: GENE_ASSOCIATION: (b2701 or b1193 or b2963 or b2558 or b4392 or b2813) SUBSYSTEM: Murein Recycling EC Number:
fast: false
reversible: false
name: murein lytic transglycosylase (murein4px4p4p) (periplasm)

592085
type: LocalParameter
units: 456180
value: 0.0

592083
type: LocalParameter
units: 456180
value: 0.0

592082
type: LocalParameter
units: 456180
value: 1000.0

592080
type: LocalParameter
units: 456180
value: 0.0

560505
type: SpeciesReference
stoichiometry: 1.0
species: 577977

577977
type: Species
notes: FORMULA: C74H112N14O39 CHARGE: -4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)

560493
type: SpeciesReference
stoichiometry: 1.0
species: 577677

560481
type: SpeciesReference
stoichiometry: 1.0
species: 577979

577979
type: Species
notes: FORMULA: C111H169N21O59 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala), one uncrosslinked tetrapaptide) (middle of chain)

577808
type: Species
notes: FORMULA: C9H18O6N3 CHARGE: -3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Fe(III)hydoxamate, unloaded

578133
type: Species
notes: FORMULA: CNS CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: Thiocyanate

580971
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis EC Number:
product: 572403
product: 572451
fast: false
reactant: 572379
name: 2-octaprenyl-6-methoxyphenol hydroxylase (anaerobic)
reversible: false
product: 572439
reactant: 572391
reactant: 572367
reactant: 572354
product: 572427
kinetic law: 572463
product: 572415

572403
type: SpeciesReference
stoichiometry: 1.0
species: 573922

572451
type: SpeciesReference
stoichiometry: 2.0
species: 575785

572379
type: SpeciesReference
stoichiometry: 3.0
species: 575099

572439
type: SpeciesReference
stoichiometry: 1.0
species: 575522

572391
type: SpeciesReference
stoichiometry: 1.0
species: 575519

572367
type: SpeciesReference
stoichiometry: 2.0
species: 574373

572354
type: SpeciesReference
stoichiometry: 1.0
species: 573928

572427
type: SpeciesReference
stoichiometry: 3.0
species: 575090

593372
type: LocalParameter
units: 456180
value: 0.0

593369
type: LocalParameter
units: 456180
value: 0.0

593368
type: LocalParameter
units: 456180
value: 1000.0

593365
type: LocalParameter
units: 456180
value: 0.0

572415
type: SpeciesReference
stoichiometry: 2.0
species: 574239

580616
type: Reaction
reactant: 556897
reactant: 556885
notes: GENE_ASSOCIATION: (b0632 or b3182 or b0839 or b2010) SUBSYSTEM: Murein Biosynthesis EC Number: 3.4.16.4
product: 556909
fast: false
name: murein D,D-carboxypeptidase (murein5px4px4p) (periplasm)
reversible: false
kinetic law: 556933
product: 556921

556897
type: SpeciesReference
stoichiometry: 1.0
species: 577991

556885
type: SpeciesReference
stoichiometry: 1.0
species: 577890

556909
type: SpeciesReference
stoichiometry: 1.0
species: 577664

591715
type: LocalParameter
units: 456180
value: 0.0

591714
type: LocalParameter
units: 456180
value: 0.0

591712
type: LocalParameter
units: 456180
value: 1000.0

591711
type: LocalParameter
units: 456180
value: 0.0

556921
type: SpeciesReference
stoichiometry: 1.0
species: 577980

577980
type: Species
notes: FORMULA: C111H167N21O58 CHARGE: -6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573755
name: three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)

579612
type: Reaction
product: 509325
name: 2,5-diketo-D-gluconate reductase (NADPH)
reactant: 509288
product: 509337
reversible: false
reactant: 509313
kinetic law: 509349
reactant: 509301
notes: GENE_ASSOCIATION: b3553 SUBSYSTEM: Alternate Carbon Metabolism EC Number:
fast: false

509325
type: SpeciesReference
stoichiometry: 1.0
species: 574128

509288
type: SpeciesReference
stoichiometry: 1.0
species: 573824

573824
type: Species
notes: FORMULA: C6H7O7 CHARGE: -1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 573750
name: 2,5-diketo-D-gluconate

509337
type: SpeciesReference
stoichiometry: 1.0
species: 575525