MODEL1106220000
type: SBMLModel
reaction: 568290
species: 566453
reaction: 567006
reaction: 567011
species: 564844
species: 566364
species: 565985
reaction: 567822
species: 565721
reaction: 567971
species: 565319
reaction: 568010
reaction: 567639
species: 564763
reaction: 567766
species: 565763
species: 566234
compartment: 564338
reaction: 567053
species: 564625
species: 566614
species: 565346
reaction: 567081
species: 566174
species: 566525
species: 565084
reaction: 567110
reaction: 567474
species: 566722
reaction: 567801
species: 566373
species: 566371
reaction: 568091
reaction: 568169
reaction: 568259
species: 566092
reaction: 567447
species: 565664
species: 565825
species: 565856
reaction: 567715
species: 565247
reaction: 567624
reaction: 568311
species: 564550
species: 566581
species: 565355
species: 565015
species: 566270
reaction: 567895
species: 566485
species: 566302
species: 565805
reaction: 568083
reaction: 567093
reaction: 567518
reaction: 568028
reaction: 567591
reaction: 566896
species: 565748
reaction: 568298
reaction: 568356
reaction: 567000
species: 565622
species: 566378
reaction: 567169
species: 565196
species: 564348
species: 566646
species: 566295
reaction: 567994
reaction: 567844
reaction: 566974
species: 565706
species: 564643
reaction: 568219
reaction: 567782
species: 565364
reaction: 567811

568290
type: Reaction
reversible: true
notes: GPR_ASSOCIATION: RSP_0473 GENE_LIST: RSP_0473; SUBSYSTEM: Glycerophospholipid metabolism Equation: Phosphatidylglycerol + CDP-diacylglycerol + H+ <=> Cardiolipin + CMP Confidence Level: 1
fast: false
reactant: 313723
reactant: 313735
product: 313760
kinetic law: 313784
name: Cardiolipin synthase
reactant: 313748
product: 313772

313723
type: SpeciesReference
stoichiometry: 1.0
species: 564919

564919
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylglycerol

564339
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Cytosol

313735
type: SpeciesReference
stoichiometry: 1.0
species: 564856

564856
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CDP-diacylglycerol

313760
type: SpeciesReference
stoichiometry: 1.0
species: 566796

566796
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cardiolipin

574885
type: LocalParameter
value: 0.0

574883
type: LocalParameter
value: 0.0

574882
type: LocalParameter
value: 1000.0

574880
type: LocalParameter
value: -1000.0

313748
type: SpeciesReference
stoichiometry: 1.0
species: 564535

564535
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: H

313772
type: SpeciesReference
stoichiometry: 1.0
species: 564481

564481
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CMP

566453
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2',3'-CyclicUMP

567006
type: Reaction
product: 243173
product: 243161
kinetic law: 243197
name: phytoene synthase
product: 243185
fast: false
reversible: false
reactant: 243149
notes: GPR_ASSOCIATION: RSP_0270 GENE_LIST: RSP_0270; SUBSYSTEM: Carotenoid biosynthesis Equation: Prephytoene diphosphate <=> Phytoene + Diphosphate Confidence Level: 3

243173
type: SpeciesReference
stoichiometry: 1.0
species: 564378

564378
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Diphosphate

243161
type: SpeciesReference
stoichiometry: 1.0
species: 566382

566382
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phytoene

568788
type: LocalParameter
value: 0.0

568787
type: LocalParameter
value: 0.0

568786
type: LocalParameter
value: 1000.0

568785
type: LocalParameter
value: 0.0

243185
type: SpeciesReference
stoichiometry: 1.0
species: 564535

243149
type: SpeciesReference
stoichiometry: 1.0
species: 565568

565568
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Prephytoenediphosphate

567011
type: Reaction
kinetic law: 243389
product: 243377
reactant: 243365
reactant: 243353
notes: GPR_ASSOCIATION: RSP_0267 GENE_LIST: RSP_0267; SUBSYSTEM: Carotenoid biosynthesis Equation: Neurosporene + H2O <=> Hydroxyneurosporene Confidence Level: 3
fast: false
reversible: true
name: hydroxyneurosporene synthase

568804
type: LocalParameter
value: 0.0

568803
type: LocalParameter
value: 0.0

568802
type: LocalParameter
value: 1000.0

568801
type: LocalParameter
value: -1000.0

243377
type: SpeciesReference
stoichiometry: 1.0
species: 566402

566402
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxyneurosporene

243365
type: SpeciesReference
stoichiometry: 1.0
species: 564345

564345
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: H2O

243353
type: SpeciesReference
stoichiometry: 1.0
species: 566386

566386
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Neurosporene

564844
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hypoxanthine

566364
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylbut-2-enoyl-CoA

565985
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydantoin-5-propionate

567822
type: Reaction
fast: false
kinetic law: 285961
reactant: 285924
name: dihydrolipoamide acetyltransferase
reactant: 285912
reactant: 285900
notes: GPR_ASSOCIATION: RSP_0964 GENE_LIST: RSP_0964; SUBSYSTEM: Succinate metabolism Equation: Succinyl-CoA + Enzyme N6-(dihydrolipoyl)lysine + H+ <=> CoA + [Dihydrolipoyllysine-residue succinyltransferase]S-succinyldihydrolipoyllysine Confidence Level: 2
reversible: true
product: 285936
product: 285949

572310
type: LocalParameter
value: 0.0

572309
type: LocalParameter
value: 0.0

572307
type: LocalParameter
value: 1000.0

572306
type: LocalParameter
value: -1000.0

285924
type: SpeciesReference
stoichiometry: 1.0
species: 564535

285912
type: SpeciesReference
stoichiometry: 1.0
species: 565877

565877
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: EnzymeN6-(dihydrolipoyl)lysine

285900
type: SpeciesReference
stoichiometry: 1.0
species: 564559

564559
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Succinyl-CoA

285936
type: SpeciesReference
stoichiometry: 1.0
species: 564372

564372
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CoA

285949
type: SpeciesReference
stoichiometry: 1.0
species: 565885

565885
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residuesuccinyltransferase]

565721
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine

567971
type: Reaction
kinetic law: 295457
product: 295445
reactant: 295433
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-Alanine[e] <=> L-Alanine[p] Confidence Level: 2
fast: false
reversible: true
name: L-Alanine transport via diffusion

573133
type: LocalParameter
value: 0.0

573131
type: LocalParameter
value: 0.0

573130
type: LocalParameter
value: 1000.0

573128
type: LocalParameter
value: -1000.0

295445
type: SpeciesReference
stoichiometry: 1.0
species: 566320

566320
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Alanine[p]

564342
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Periplasm

295433
type: SpeciesReference
stoichiometry: 1.0
species: 566322

566322
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Alanine[e]

564338
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Extracellular

565319
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: GDP-4-dehydro-6-deoxy-D-mannose

568010
type: Reaction
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Valine, leucine and isoleucine degradation Equation: [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase]S-(3-methylbutanoyl)dihydrolipoyllysine + CoA <=> 3-Methylbutanoyl-CoA + Enzyme N6-(dihydrolipoyl)lysine Confidence Level: 1
reversible: true
product: 297849
reactant: 297813
product: 297861
reactant: 297825
fast: false
kinetic law: 297873
reactant: 297837

297849
type: SpeciesReference
stoichiometry: 1.0
species: 565877

297813
type: SpeciesReference
stoichiometry: 1.0
species: 566465

566465
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase]

297861
type: SpeciesReference
stoichiometry: 1.0
species: 565993

565993
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methylbutanoyl-CoA

297825
type: SpeciesReference
stoichiometry: 1.0
species: 564372

573351
type: LocalParameter
value: 0.0

573350
type: LocalParameter
value: 0.0

573348
type: LocalParameter
value: 1000.0

573347
type: LocalParameter
value: -1000.0

297837
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567639
type: Reaction
product: 273610
reversible: true
kinetic law: 273646
product: 273622
notes: GPR_ASSOCIATION: RSP_0263 GENE_LIST: RSP_0263; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 3-Hydroxyethylbacteriochlorophyllide a + Oxidized Ferredoxin <=> Bacteriochlorophyllide a + 2 H+ + Reduced Ferredoxin Confidence Level: 2
reactant: 273586
name: chlorophyll synthesis pathway, BchC
reactant: 273598
product: 273634
fast: false

273610
type: SpeciesReference
stoichiometry: 1.0
species: 564457

564457
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Bacteriochlorophyllidea

570987
type: LocalParameter
value: 0.0

570985
type: LocalParameter
value: 0.0

570984
type: LocalParameter
value: 1000.0

570983
type: LocalParameter
value: -1000.0

273622
type: SpeciesReference
stoichiometry: 1.0
species: 565943

565943
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Reducedferredoxin

273586
type: SpeciesReference
stoichiometry: 1.0
species: 565958

565958
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Hydroxyethylbacteriochlorophyllidea

273598
type: SpeciesReference
stoichiometry: 1.0
species: 565945

565945
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Oxidizedferredoxin

273634
type: SpeciesReference
stoichiometry: 2.0
species: 564535

564763
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribulose5-phosphate

567766
type: Reaction
kinetic law: 282146
product: 282134
product: 282110
reactant: 282074
product: 282122
fast: false
reversible: false
notes: GPR_ASSOCIATION: RSP_0368 GENE_LIST: RSP_0368; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + UTP + NH3 <=> ADP + Orthophosphate + CTP + 2H+ Confidence Level: 2
product: 282098
reactant: 282062
name: CTP synthetase
reactant: 282086

571645
type: LocalParameter
value: 0.0

571644
type: LocalParameter
value: 0.0

571642
type: LocalParameter
value: 1000.0

571641
type: LocalParameter
value: 0.0

282134
type: SpeciesReference
stoichiometry: 2.0
species: 564535

282110
type: SpeciesReference
stoichiometry: 1.0
species: 564369

564369
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Orthophosphate

282074
type: SpeciesReference
stoichiometry: 1.0
species: 564523

564523
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UTP

282122
type: SpeciesReference
stoichiometry: 1.0
species: 564499

564499
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CTP

282098
type: SpeciesReference
stoichiometry: 1.0
species: 564366

564366
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: ADP

282062
type: SpeciesReference
stoichiometry: 1.0
species: 564348

564348
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: ATP

282086
type: SpeciesReference
stoichiometry: 1.0
species: 564381

564381
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NH3

565763
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl1-phosphate

566234
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxycytidine

567053
type: Reaction
product: 245440
product: 245428
name: cystathionine gamma-synthase
notes: GPR_ASSOCIATION: RSP_2917 GENE_LIST: RSP_2917; SUBSYSTEM: Cysteine and methionine metabolism Equation: O-Acetyl-L-homoserine + L-Selenocysteine <=> L-Selenocystathionine + Acetate Confidence Level: 2
reactant: 245392
reversible: true
product: 245416
reactant: 245404
kinetic law: 245452
fast: false

245440
type: SpeciesReference
stoichiometry: 1.0
species: 564535

245428
type: SpeciesReference
stoichiometry: 1.0
species: 564427

564427
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetate

245392
type: SpeciesReference
stoichiometry: 1.0
species: 565259

565259
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: O-Acetyl-L-homoserine

245416
type: SpeciesReference
stoichiometry: 1.0
species: 566416

566416
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Selenocystathionine

245404
type: SpeciesReference
stoichiometry: 1.0
species: 566414

566414
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Selenocysteine

568925
type: LocalParameter
value: 0.0

568924
type: LocalParameter
value: 0.0

568923
type: LocalParameter
value: 1000.0

568922
type: LocalParameter
value: -1000.0

564625
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Biotin

566614
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Riboflavin[e]

565346
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose5-phosphate

567081
type: Reaction
kinetic law: 246406
product: 246394
reactant: 246382
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: zinc[e] <=> Confidence Level:
fast: false
reversible: false
name: zinc exchange

569011
type: LocalParameter
value: 0.0

569010
type: LocalParameter
value: 0.0

569009
type: LocalParameter
value: 1000.0

569008
type: LocalParameter
value: 0.0

246394
type: SpeciesReference
stoichiometry: 1.0
species: 566195

566195
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Zinc[e]

246382
type: SpeciesReference
stoichiometry: 1.0
species: 566194

566194
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Zinc[e]

566174
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glutathione[p]

566525
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Tryptophan[e]

565084
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxaminephosphate

567110
type: Reaction
kinetic law: 247201
product: 247189
reactant: 247177
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: phosphate[e] <=> Confidence Level:
fast: false
reversible: false
name: phosphate exchange

569100
type: LocalParameter
value: 0.0

569099
type: LocalParameter
value: 0.0

569098
type: LocalParameter
value: 1000.0

569097
type: LocalParameter
value: 0.0

247189
type: SpeciesReference
stoichiometry: 1.0
species: 566106

566106
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Orthophosphate[e]

247177
type: SpeciesReference
stoichiometry: 1.0
species: 566104

566104
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Orthophosphate[e]

567474
type: Reaction
reversible: false
name: D-amino acid dehydrogenase
reactant: 263371
product: 263407
product: 263395
kinetic law: 263419
product: 263383
notes: GPR_ASSOCIATION: RSP_2316 or RSP_3113 GENE_LIST: RSP_2316; RSP_3113; SUBSYSTEM: Nitrogen metabolism Equation: D-Phenylalanine + H2O + FAD <=> Phenylpyruvate + NH3 + FADH2 Confidence Level: 2
reactant: 263347
reactant: 263359
fast: false

263371
type: SpeciesReference
stoichiometry: 1.0
species: 564387

564387
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: FAD

263407
type: SpeciesReference
stoichiometry: 1.0
species: 565352

565352
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: FADH2

263395
type: SpeciesReference
stoichiometry: 1.0
species: 564381

570243
type: LocalParameter
value: 0.0

570241
type: LocalParameter
value: 0.0

570240
type: LocalParameter
value: 1000.0

570239
type: LocalParameter
value: 0.0

263383
type: SpeciesReference
stoichiometry: 1.0
species: 565934

565934
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phenylpyruvate

263347
type: SpeciesReference
stoichiometry: 1.0
species: 565933

565933
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Phenylalanine

263359
type: SpeciesReference
stoichiometry: 1.0
species: 564345

566722
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Altronate[p]

567801
type: Reaction
kinetic law: 284633
product: 284621
product: 284609
reactant: 284597
notes: GPR_ASSOCIATION: RSP_0758 GENE_LIST: RSP_0758; SUBSYSTEM: Riboflavin metabolism Equation: 2 6,7-Dimethyl-8-(1-D-ribityl)lumazine <=> Riboflavin + 5-Amino-6-(1-D-ribitylamino)uracil Confidence Level: 2
fast: false
reversible: false
name: riboflavin synthase

572196
type: LocalParameter
value: 0.0

572195
type: LocalParameter
value: 0.0

572193
type: LocalParameter
value: 1000.0

572192
type: LocalParameter
value: 0.0

284621
type: SpeciesReference
stoichiometry: 1.0
species: 565739

565739
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Amino-6-(1-D-ribitylamino)uracil

284609
type: SpeciesReference
stoichiometry: 1.0
species: 564835

564835
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Riboflavin

284597
type: SpeciesReference
stoichiometry: 2.0
species: 565667

565667
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 6,7-Dimethyl-8-(1-D-ribityl)lumazine

566373
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2E)-5-Methylhexa-2,4-dienoyl-CoA

566371
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Methylhex-4-enoyl-CoA

568091
type: Reaction
kinetic law: 302632
product: 302620
reactant: 302608
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Cytosine[e] <=> Confidence Level:
fast: false
reversible: false
name: Cytosine exchange

573796
type: LocalParameter
value: 0.0

573795
type: LocalParameter
value: 0.0

573793
type: LocalParameter
value: 1000.0

573792
type: LocalParameter
value: 0.0

302620
type: SpeciesReference
stoichiometry: 1.0
species: 566566

566566
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cytosine[e]

302608
type: SpeciesReference
stoichiometry: 1.0
species: 566565

566565
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cytosine[e]

568169
type: Reaction
kinetic law: 306146
product: 306134
reactant: 306122
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: D-Arabitol[e] <=> Confidence Level:
fast: false
reversible: false
name: D-Arabitol exchange

574220
type: LocalParameter
value: 0.0

574218
type: LocalParameter
value: 0.0

574217
type: LocalParameter
value: 1000.0

574215
type: LocalParameter
value: 0.0

306134
type: SpeciesReference
stoichiometry: 1.0
species: 566670

566670
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Arabitol[e]

306122
type: SpeciesReference
stoichiometry: 1.0
species: 566669

566669
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Arabitol[e]

568259
type: Reaction
fast: false
product: 311814
notes: GPR_ASSOCIATION: RSP_1352 GENE_LIST: RSP_1352; SUBSYSTEM: Vitamin B6 metabolism Equation: 4-Phospho-D-erythronate + NAD+ <=> 2-Oxo-3-hydroxy-4-phosphobutanoate + NADH + H+ Confidence Level: 1
name: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding subunit
reactant: 311778
product: 311802
reactant: 311790
product: 311826
kinetic law: 311838
reversible: true

311814
type: SpeciesReference
stoichiometry: 1.0
species: 564354

564354
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NADH

311778
type: SpeciesReference
stoichiometry: 1.0
species: 566765

566765
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Phospho-D-erythronate

311802
type: SpeciesReference
stoichiometry: 1.0
species: 566381

566381
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Oxo-3-hydroxy-4-phosphobutanoate

311790
type: SpeciesReference
stoichiometry: 1.0
species: 564351

564351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NAD

311826
type: SpeciesReference
stoichiometry: 1.0
species: 564535

574714
type: LocalParameter
value: 0.0

574713
type: LocalParameter
value: 0.0

574711
type: LocalParameter
value: 1000.0

574710
type: LocalParameter
value: -1000.0

566092
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Ribose[e]

567447
type: Reaction
product: 261971
product: 261995
product: 261983
reactant: 261947
reversible: true
notes: GPR_ASSOCIATION: RSP_2576 GENE_LIST: RSP_2576; SUBSYSTEM: Methane metabolism Equation: S-(Hydroxymethyl)glutathione + NAD+ <=> S-Formylglutathione + NADH + H+ Confidence Level: 3
reactant: 261959
name: alcohol dehydrogenase class III
fast: false
kinetic law: 262007

261971
type: SpeciesReference
stoichiometry: 1.0
species: 565247

565247
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: S-Formylglutathione

261995
type: SpeciesReference
stoichiometry: 1.0
species: 564535

261983
type: SpeciesReference
stoichiometry: 1.0
species: 564354

261947
type: SpeciesReference
stoichiometry: 1.0
species: 565871

565871
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: S-(Hydroxymethyl)glutathione

261959
type: SpeciesReference
stoichiometry: 1.0
species: 564351

570149
type: LocalParameter
value: 0.0

570148
type: LocalParameter
value: 0.0

570147
type: LocalParameter
value: 1000.0

570146
type: LocalParameter
value: -1000.0

565664
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Methyl-5-(2-phosphoethyl)-thiazole

565825
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Precorrin6Y

565856
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Phospho-4-(cytidine5'-diphospho)-2-C-methyl-D-erythritol

567715
type: Reaction
product: 278723
product: 278735
kinetic law: 278747
name: nucleoside triphosphate pyrophosphohydrolase
product: 278711
reversible: false
reactant: 278699
fast: false
notes: GPR_ASSOCIATION: RSP_2912 GENE_LIST: RSP_2912; SUBSYSTEM: Purine metabolism Equation: XTP + H2O <=> Xanthosine 5'-phosphate + Diphosphate + H+ Confidence Level: 2
reactant: 278687

278723
type: SpeciesReference
stoichiometry: 1.0
species: 564378

278735
type: SpeciesReference
stoichiometry: 1.0
species: 564535

571390
type: LocalParameter
value: 0.0

571389
type: LocalParameter
value: 0.0

571387
type: LocalParameter
value: 1000.0

571386
type: LocalParameter
value: 0.0

278711
type: SpeciesReference
stoichiometry: 1.0
species: 565087

565087
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Xanthosine5'-phosphate

278699
type: SpeciesReference
stoichiometry: 1.0
species: 564345

278687
type: SpeciesReference
stoichiometry: 1.0
species: 566446

566446
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: XTP

567624
type: Reaction
name: cob(I)yrinic acid a,c-diamide adenosyltransferase
reactant: 272422
kinetic law: 272459
reversible: true
reactant: 272410
product: 272447
product: 272435
fast: false
notes: GPR_ASSOCIATION: RSP_2831 GENE_LIST: RSP_2831; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Cob(I)yrinate a,c diamide + ATP <=> Adenosyl cobyrinate a,c diamide + Triphosphate Confidence Level: 2

272422
type: SpeciesReference
stoichiometry: 1.0
species: 565954

565954
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cob(I)yrinatea,cdiamide

570909
type: LocalParameter
value: 0.0

570907
type: LocalParameter
value: 0.0

570906
type: LocalParameter
value: 1000.0

570905
type: LocalParameter
value: -1000.0

272410
type: SpeciesReference
stoichiometry: 1.0
species: 564348

272447
type: SpeciesReference
stoichiometry: 1.0
species: 565841

565841
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Adenosylcobyrinatea,cdiamide

272435
type: SpeciesReference
stoichiometry: 1.0
species: 565045

565045
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Triphosphate

568311
type: Reaction
product: 314958
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 4-Coumarate[p] + H+[p] <=> 4-Coumarate + H+ Confidence Level: 1
fast: false
kinetic law: 314970
reactant: 314934
name: 4-Coumarate via proton symport
reactant: 314922
product: 314946
reversible: true

314958
type: SpeciesReference
stoichiometry: 1.0
species: 564535

575012
type: LocalParameter
value: 0.0

575010
type: LocalParameter
value: 0.0

575009
type: LocalParameter
value: 1000.0

575007
type: LocalParameter
value: -1000.0

314934
type: SpeciesReference
stoichiometry: 1.0
species: 566248

566248
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: H[p]

314922
type: SpeciesReference
stoichiometry: 1.0
species: 566824

566824
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 4-Coumarate[p]

314946
type: SpeciesReference
stoichiometry: 1.0
species: 565177

565177
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Coumarate

564550
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Urea

566581
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-Malate[e]

565355
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Potassium

565015
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTTP

566270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Oxygen[e]

567895
type: Reaction
product: 292155
product: 292142
reversible: false
reactant: 292118
product: 292130
notes: GPR_ASSOCIATION: RSP_0904 and RSP_0905 and RSP_0906 and RSP_0908 GENE_LIST: RSP_0904; RSP_0905; RSP_0906; RSP_0908; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Fe+2[p] <=> ADP + H+ + Orthophosphate + Fe+2 Confidence Level: 2
name: ABC Fe+2 transporter
fast: false
reactant: 292106
product: 292167
reactant: 292094
kinetic law: 292179

292155
type: SpeciesReference
stoichiometry: 1.0
species: 564369

292142
type: SpeciesReference
stoichiometry: 1.0
species: 564535

292118
type: SpeciesReference
stoichiometry: 1.0
species: 566196

566196
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Fe2[p]

292130
type: SpeciesReference
stoichiometry: 1.0
species: 564366

292106
type: SpeciesReference
stoichiometry: 1.0
species: 564345

292167
type: SpeciesReference
stoichiometry: 1.0
species: 565949

565949
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Fe2

292094
type: SpeciesReference
stoichiometry: 1.0
species: 564348

572712
type: LocalParameter
value: 0.0

572711
type: LocalParameter
value: 0.0

572709
type: LocalParameter
value: 1000.0

572708
type: LocalParameter
value: 0.0

566485
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sulfoacetaldehyde

566302
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3'-AMP[e]

565805
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: alpha-Ribazole

568083
type: Reaction
kinetic law: 302271
product: 302259
reactant: 302247
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Urea[e] <=> Urea[p] Confidence Level: 2
fast: false
reversible: true
name: Urea transport via diffusion

573752
type: LocalParameter
value: 0.0

573751
type: LocalParameter
value: 0.0

573749
type: LocalParameter
value: 1000.0

573748
type: LocalParameter
value: -1000.0

302259
type: SpeciesReference
stoichiometry: 1.0
species: 566552

566552
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Urea[p]

302247
type: SpeciesReference
stoichiometry: 1.0
species: 566553

566553
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Urea[e]

567093
type: Reaction
kinetic law: 246732
product: 246720
reactant: 246708
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: spermidine[e] <=> Confidence Level:
fast: false
reversible: false
name: spermidine exchange

569047
type: LocalParameter
value: 0.0

569046
type: LocalParameter
value: 0.0

569045
type: LocalParameter
value: 1000.0

569044
type: LocalParameter
value: 0.0

246720
type: SpeciesReference
stoichiometry: 1.0
species: 566041

566041
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: spermidine[e]

246708
type: SpeciesReference
stoichiometry: 1.0
species: 566040

566040
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: spermidine[e]

567518
type: Reaction
reactant: 265957
fast: false
product: 265993
notes: GPR_ASSOCIATION: RSP_0490 GENE_LIST: RSP_0490; SUBSYSTEM: Pentose and glucuronate interconversions Equation: ATP + 2-Dehydro-3-deoxy-D-gluconate <=> ADP + 2-Dehydro-3-deoxy-6-phospho-D-gluconate + H+ Confidence Level: 2
kinetic law: 266005
product: 265981
reactant: 265944
product: 265969
reversible: true
name: 2-keto-3-deoxygluconate kinase

265957
type: SpeciesReference
stoichiometry: 1.0
species: 564769

564769
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Dehydro-3-deoxy-D-gluconate

265993
type: SpeciesReference
stoichiometry: 1.0
species: 564535

570406
type: LocalParameter
value: 0.0

570404
type: LocalParameter
value: 0.0

570403
type: LocalParameter
value: 1000.0

570402
type: LocalParameter
value: -1000.0

265981
type: SpeciesReference
stoichiometry: 1.0
species: 565685

565685
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Dehydro-3-deoxy-6-phospho-D-gluconate

265944
type: SpeciesReference
stoichiometry: 1.0
species: 564348

265969
type: SpeciesReference
stoichiometry: 1.0
species: 564366

568028
type: Reaction
reversible: true
reactant: 299155
fast: false
reactant: 299167
product: 299191
product: 299179
product: 299203
kinetic law: 299215
name: dihydropyrimidine dehydrogenase
notes: GPR_ASSOCIATION: RSP_0187 GENE_LIST: RSP_0187; SUBSYSTEM: Pyrimidine metabolism Equation: 5,6-Dihydrouracil + NADP+ <=> Uracil + NADPH + H+ Confidence Level: 2

299155
type: SpeciesReference
stoichiometry: 1.0
species: 564985

564985
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,6-Dihydrouracil

299167
type: SpeciesReference
stoichiometry: 1.0
species: 564360

564360
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NADP

299191
type: SpeciesReference
stoichiometry: 1.0
species: 564357

564357
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NADPH

299179
type: SpeciesReference
stoichiometry: 1.0
species: 564595

564595
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Uracil

299203
type: SpeciesReference
stoichiometry: 1.0
species: 564535

573450
type: LocalParameter
value: 0.0

573449
type: LocalParameter
value: 0.0

573447
type: LocalParameter
value: 1000.0

573446
type: LocalParameter
value: -1000.0

567591
type: Reaction
kinetic law: 270111
notes: GPR_ASSOCIATION: RSP_0706 GENE_LIST: RSP_0706; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: Prephenate + H+ <=> Phenylpyruvate + H2O + CO2 Confidence Level: 2
product: 270087
reactant: 270062
product: 270099
reactant: 270050
fast: false
reversible: false
name: prephenate dehydratase
product: 270074

570741
type: LocalParameter
value: 0.0

570739
type: LocalParameter
value: 0.0

570738
type: LocalParameter
value: 1000.0

570737
type: LocalParameter
value: 0.0

270087
type: SpeciesReference
stoichiometry: 1.0
species: 564345

270062
type: SpeciesReference
stoichiometry: 1.0
species: 564535

270099
type: SpeciesReference
stoichiometry: 1.0
species: 564375

564375
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CO2

270050
type: SpeciesReference
stoichiometry: 1.0
species: 564832

564832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Prephenate

270074
type: SpeciesReference
stoichiometry: 1.0
species: 565934

566896
type: Reaction
name: aminotransferase
notes: GPR_ASSOCIATION: RSP_2176 GENE_LIST: RSP_2176; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: beta-Alanine + 2-Oxoglutarate <=> 3-Oxopropanoate + L-Glutamate Confidence Level: 2
reversible: true
reactant: 237191
kinetic law: 237240
product: 237228
reactant: 237203
product: 237216
fast: false

237191
type: SpeciesReference
stoichiometry: 1.0
species: 564580

564580
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: beta-Alanine

568451
type: LocalParameter
value: 0.0

568450
type: LocalParameter
value: 0.0

568449
type: LocalParameter
value: 1000.0

568448
type: LocalParameter
value: -1000.0

237228
type: SpeciesReference
stoichiometry: 1.0
species: 564408

564408
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamate

237203
type: SpeciesReference
stoichiometry: 1.0
species: 564411

564411
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Oxoglutarate

237216
type: SpeciesReference
stoichiometry: 1.0
species: 564793

564793
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxopropanoate

565748
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate

568298
type: Reaction
kinetic law: 314375
product: 314363
reactant: 314351
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Methanol[e] <=> Methanol[p] Confidence Level: 2
fast: false
reversible: true
name: Methanol transport via diffusion

574940
type: LocalParameter
value: 0.0

574939
type: LocalParameter
value: 0.0

574937
type: LocalParameter
value: 1000.0

574936
type: LocalParameter
value: -1000.0

314363
type: SpeciesReference
stoichiometry: 1.0
species: 566799

566799
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Methanol[p]

314351
type: SpeciesReference
stoichiometry: 1.0
species: 566800

566800
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Methanol[e]

568356
type: Reaction
kinetic law: 318244
name: 3'-UMP transport via proton symport
reversible: true
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-UMP[p] + H+[p] <=> 3'-UMP + H+ Confidence Level: 1
product: 318220
reactant: 318196
product: 318232
fast: false
reactant: 318208

575259
type: LocalParameter
value: 0.0

575258
type: LocalParameter
value: 0.0

575256
type: LocalParameter
value: 1000.0

575255
type: LocalParameter
value: -1000.0

318220
type: SpeciesReference
stoichiometry: 1.0
species: 566240

566240
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-UMP

318196
type: SpeciesReference
stoichiometry: 1.0
species: 566304

566304
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3'-UMP[p]

318232
type: SpeciesReference
stoichiometry: 1.0
species: 564535

318208
type: SpeciesReference
stoichiometry: 1.0
species: 566248

567000
type: Reaction
product: 242931
reactant: 242919
fast: false
reactant: 242907
name: methoxyneurosporene dehydrogenase (hydroxyneurosporene desaturase)
kinetic law: 242955
product: 242943
reversible: true
notes: GPR_ASSOCIATION: RSP_0266 GENE_LIST: RSP_0266; SUBSYSTEM: Carotenoid biosynthesis Equation: Rhodovibrin + FAD <=> Hydroxyspirilloxanthin + FADH2 Confidence Level: 4

242931
type: SpeciesReference
stoichiometry: 1.0
species: 566331

566331
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxyspirilloxanthin

242919
type: SpeciesReference
stoichiometry: 1.0
species: 564387

242907
type: SpeciesReference
stoichiometry: 1.0
species: 566330

566330
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Rhodovibrin

568772
type: LocalParameter
value: 0.0

568771
type: LocalParameter
value: 0.0

568770
type: LocalParameter
value: 1000.0

568769
type: LocalParameter
value: -1000.0

242943
type: SpeciesReference
stoichiometry: 1.0
species: 565352

565622
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylglycerophosphate

566378
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidyl-N-dimethylethanolamine

567169
type: Reaction
product: 249338
reversible: true
reactant: 249314
fast: false
reactant: 249326
name: Acyl-CoA dehydrogenase
kinetic law: 249362
notes: GPR_ASSOCIATION: RSP_1679 GENE_LIST: RSP_1679; SUBSYSTEM: Fatty acid biosynthesis Equation: Propanoyl-CoA + FAD <=> Propenoyl-CoA + FADH2 Confidence Level: 2
product: 249350

249338
type: SpeciesReference
stoichiometry: 1.0
species: 566366

566366
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Propenoyl-CoA

249314
type: SpeciesReference
stoichiometry: 1.0
species: 564583

564583
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Propanoyl-CoA

249326
type: SpeciesReference
stoichiometry: 1.0
species: 564387

569272
type: LocalParameter
value: 0.0

569271
type: LocalParameter
value: 0.0

569270
type: LocalParameter
value: 1000.0

569269
type: LocalParameter
value: -1000.0

249350
type: SpeciesReference
stoichiometry: 1.0
species: 565352

565196
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deamino-NAD

566646
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hydrogen[e]

566295
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxobutanoate[e]

567994
type: Reaction
kinetic law: 296848
product: 296836
product: 296824
reactant: 296812
notes: GPR_ASSOCIATION: RSP_3074 or RSP_0176 GENE_LIST: RSP_3074; RSP_0176; SUBSYSTEM: Valine, leucine and isoleucine biosynthesis Equation: 2,3-Dihydroxy-3-methylbutanoate <=> 3-Methyl-2-oxobutanoic acid + H2O Confidence Level: 2
fast: false
reversible: false
name: dihydroxy-acid dehydratase

573263
type: LocalParameter
value: 0.0

573262
type: LocalParameter
value: 0.0

573260
type: LocalParameter
value: 1000.0

573259
type: LocalParameter
value: 0.0

296836
type: SpeciesReference
stoichiometry: 1.0
species: 564345

296824
type: SpeciesReference
stoichiometry: 1.0
species: 564670

564670
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methyl-2-oxobutanoicacid

296812
type: SpeciesReference
stoichiometry: 1.0
species: 565631

565631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,3-Dihydroxy-3-methylbutanoate

567844
type: Reaction
name: putative hydoxyethylthiazole kinase
reversible: true
reactant: 287545
product: 287569
kinetic law: 287593
product: 287557
product: 287581
reactant: 287533
fast: false
notes: GPR_ASSOCIATION: RSP_0649 GENE_LIST: RSP_0649; SUBSYSTEM: Thiamine metabolism Equation: ATP + 5-(2-Hydroxyethyl)-4-methylthiazole <=> ADP + 4-Methyl-5-(2-phosphoethyl)-thiazole + H+ Confidence Level: 2

287545
type: SpeciesReference
stoichiometry: 1.0
species: 565658

565658
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-(2-Hydroxyethyl)-4-methylthiazole

287569
type: SpeciesReference
stoichiometry: 1.0
species: 565664

572431
type: LocalParameter
value: 0.0

572429
type: LocalParameter
value: 0.0

572428
type: LocalParameter
value: 1000.0

572426
type: LocalParameter
value: -1000.0

287557
type: SpeciesReference
stoichiometry: 1.0
species: 564366

287581
type: SpeciesReference
stoichiometry: 1.0
species: 564535

287533
type: SpeciesReference
stoichiometry: 1.0
species: 564348

566974
type: Reaction
notes: GPR_ASSOCIATION: RSP_1068 GENE_LIST: RSP_1068; SUBSYSTEM: Arginine and proline metabolism Equation: ATP + N-Acetyl-L-glutamate <=> ADP + N-Acetyl-L-glutamate 5-phosphate Confidence Level: 2
product: 241555
product: 241543
reversible: false
reactant: 241519
kinetic law: 241568
fast: false
reactant: 241531
name: acetylglutamate kinase

241555
type: SpeciesReference
stoichiometry: 1.0
species: 565643

565643
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-glutamate5-phosphate

241543
type: SpeciesReference
stoichiometry: 1.0
species: 564366

241519
type: SpeciesReference
stoichiometry: 1.0
species: 564348

568692
type: LocalParameter
value: 0.0

568691
type: LocalParameter
value: 0.0

568690
type: LocalParameter
value: 1000.0

568689
type: LocalParameter
value: 0.0

241531
type: SpeciesReference
stoichiometry: 1.0
species: 565072

565072
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-glutamate

565706
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Amino-2-methyl-5-phosphomethylpyrimidine

564643
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glutathionedisulfide

568219
type: Reaction
name: ABC Cys-Gly transporter
kinetic law: 308680
product: 308668
product: 308656
notes: GPR_ASSOCIATION: (RSP_0804 and RSP_0805 and RSP_0806 and RSP_0807) or (RSP_0803 and RSP_0805 and RSP_0806 and RSP_0807) or (RSP_1451 and RSP_1452 and RSP_1453 and RSP_1454) or (RSP_3524 and RSP_3523 and RSP_3522 and RSP_3520) or (RSP_3525 and RSP_3523 and RSP_3522 and RSP_3520) or (RSP_3248 and RSP_3249 and RSP_3250 and RSP_3251) or (RSP_3255 and RSP_3257 and RSP_3258 and RSP_3252) or (RSP_0704 and RSP_0703 and RSP_0702 and RSP_0701) or (RSP_3231 and RSP_3232 and RSP_3235 and RSP_3236) or (RSP_3231 and RSP_3232 and RSP_3235 and RSP_3235) or (RSP_2702 and RSP_2700 and RSP_2701 and RSP_2703) GENE_LIST: RSP_0804; RSP_0805; RSP_0806; RSP_0807; RSP_0803; RSP_0805; RSP_0806; RSP_0807; RSP_1451; RSP_1452; RSP_1453; RSP_1454; RSP_3524; RSP_3523; RSP_3522; RSP_3520; RSP_3525; RSP_3523; RSP_3522; RSP_3520; RSP_3248; RSP_3249; RSP_3250; RSP_3251; RSP_3255; RSP_3257; RSP_3258; RSP_3252; RSP_0704; RSP_0703; RSP_0702; RSP_0701; RSP_3231; RSP_3232; RSP_3235; RSP_3236; RSP_3231; RSP_3232; RSP_3235; RSP_3235; RSP_2702; RSP_2700; RSP_2701; RSP_2703; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Cys-Gly[p] <=> ADP + H+ + Orthophosphate + Cys-Gly Confidence Level: 3
product: 308632
reactant: 308608
fast: false
product: 308644
reactant: 308620
reactant: 308596
reversible: false

574495
type: LocalParameter
value: 0.0

574493
type: LocalParameter
value: 0.0

574492
type: LocalParameter
value: 1000.0

574490
type: LocalParameter
value: 0.0

308668
type: SpeciesReference
stoichiometry: 1.0
species: 565358

565358
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cys-Gly

308656
type: SpeciesReference
stoichiometry: 1.0
species: 564369

308632
type: SpeciesReference
stoichiometry: 1.0
species: 564366

308608
type: SpeciesReference
stoichiometry: 1.0
species: 564345

308644
type: SpeciesReference
stoichiometry: 1.0
species: 564535

308620
type: SpeciesReference
stoichiometry: 1.0
species: 566730

566730
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cys-Gly[p]

308596
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567782
type: Reaction
reactant: 283196
name: acetyl-coenzyme A synthetase
kinetic law: 283258
reactant: 283184
product: 283221
notes: GPR_ASSOCIATION: RSP_0579 GENE_LIST: RSP_0579; SUBSYSTEM: Pyruvate metabolism Equation: ATP + Acetate + CoA <=> AMP + Diphosphate + Acetyl-CoA Confidence Level: 4
product: 283234
reversible: false
fast: false
reactant: 283208
product: 283246

283196
type: SpeciesReference
stoichiometry: 1.0
species: 564427

571725
type: LocalParameter
value: 0.0

571724
type: LocalParameter
value: 0.0

571722
type: LocalParameter
value: 1000.0

571721
type: LocalParameter
value: 0.0

283184
type: SpeciesReference
stoichiometry: 1.0
species: 564348

283221
type: SpeciesReference
stoichiometry: 1.0
species: 564396

564396
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: AMP

283234
type: SpeciesReference
stoichiometry: 1.0
species: 564378

283208
type: SpeciesReference
stoichiometry: 1.0
species: 564372

283246
type: SpeciesReference
stoichiometry: 1.0
species: 564405

564405
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetyl-CoA

565364
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hippurate

567811
type: Reaction
kinetic law: 285260
product: 285248
reactant: 285236
notes: GPR_ASSOCIATION: RSP_2446 GENE_LIST: RSP_2446; SUBSYSTEM: Starch and sucrose metabolism Equation: Maltose <=> alpha,alpha-Trehalose Confidence Level: 2
fast: false
reversible: true
name: putative trehalose synthase

572251
type: LocalParameter
value: 0.0

572249
type: LocalParameter
value: 0.0

572248
type: LocalParameter
value: 1000.0

572246
type: LocalParameter
value: -1000.0

285248
type: SpeciesReference
stoichiometry: 1.0
species: 565268

565268
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: alpha,alpha-Trehalose

285236
type: SpeciesReference
stoichiometry: 1.0
species: 564772

564772
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Maltose

566192
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Zinc[p]

567495
type: Reaction
product: 264818
reactant: 264770
product: 264830
reactant: 264794
kinetic law: 264842
reversible: true
name: F0F1 ATP synthase subunit epsilon
fast: false
reactant: 264782
notes: GPR_ASSOCIATION: (RSP_2300 and RSP_2299 and RSP_2298 and RSP_2297 and RSP_2296 and RSP_1038 and RSP_1037 and RSP_1039 and (RSP_1035 or RSP_1036 or RSP_7012)) or (RSP_3933 and RSP_3931 and RSP_3930 and RSP_3929 and RSP_3936 and RSP_3935 and RSP_1037 and (RSP_1035 or RSP_1036 or RSP_7012)) GENE_LIST: RSP_2300; RSP_2299; RSP_2298; RSP_2297; RSP_2296; RSP_1038; RSP_1037; RSP_1039; RSP_1035; RSP_1036; RSP_7012; RSP_3933; RSP_3931; RSP_3930; RSP_3929; RSP_3936; RSP_3935; RSP_1037; RSP_1035; RSP_1036; RSP_7012; SUBSYSTEM: Oxidative phosphorylation Equation: ADP + 4 H+[p] + Orthophosphate <=> <=> ATP + 3 H+ + H20 Confidence Level: 2
product: 264806

264818
type: SpeciesReference
stoichiometry: 3.0
species: 564535

264770
type: SpeciesReference
stoichiometry: 1.0
species: 564366

264830
type: SpeciesReference
stoichiometry: 1.0
species: 564345

264794
type: SpeciesReference
stoichiometry: 1.0
species: 564369

570322
type: LocalParameter
value: 0.0

570320
type: LocalParameter
value: 0.0

570319
type: LocalParameter
value: 1000.0

570318
type: LocalParameter
value: -1000.0

264782
type: SpeciesReference
stoichiometry: 4.0
species: 566248

264806
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567979
type: Reaction
fast: false
reversible: false
notes: GPR_ASSOCIATION: RSP_1869 or RSP_1492 GENE_LIST: RSP_1869; RSP_1492; SUBSYSTEM: Ubiquinone and other terpenoid-quinone biosynthesis Equation: 2-Octaprenyl-6-methoxyphenol + Oxygen + NADPH <=> 2-Octaprenyl-6-methoxy-1,4-benzoquinone + NADP+ + H2O + H+ Confidence Level: 2
reactant: 295867
product: 295928
reactant: 295879
product: 295916
product: 295904
kinetic law: 295940
reactant: 295855
product: 295892
name: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase

295867
type: SpeciesReference
stoichiometry: 1.0
species: 564363

564363
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Oxygen

295928
type: SpeciesReference
stoichiometry: 1.0
species: 564535

295879
type: SpeciesReference
stoichiometry: 1.0
species: 564357

295916
type: SpeciesReference
stoichiometry: 1.0
species: 564345

295904
type: SpeciesReference
stoichiometry: 1.0
species: 564360

573176
type: LocalParameter
value: 0.0

573175
type: LocalParameter
value: 0.0

573174
type: LocalParameter
value: 1000.0

573173
type: LocalParameter
value: 0.0

295855
type: SpeciesReference
stoichiometry: 1.0
species: 565995

565995
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Octaprenyl-6-methoxyphenol

295892
type: SpeciesReference
stoichiometry: 1.0
species: 565997

565997
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Octaprenyl-6-methoxy-1,4-benzoquinone

566673
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Cysteate[e]

568179
type: Reaction
kinetic law: 306653
product: 306641
reactant: 306629
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 2',3'-Cyclic AMP[e] <=> 2',3'-Cyclic AMP[p] Confidence Level: 2
fast: false
reversible: true
name: 2',3'-Cyclic AMP transport via diffusion

574275
type: LocalParameter
value: 0.0

574273
type: LocalParameter
value: 0.0

574272
type: LocalParameter
value: 1000.0

574270
type: LocalParameter
value: -1000.0

306641
type: SpeciesReference
stoichiometry: 1.0
species: 566680

566680
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2',3'-CyclicAMP[p]

306629
type: SpeciesReference
stoichiometry: 1.0
species: 566681

566681
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicAMP[e]

568269
type: Reaction
kinetic law: 312408
product: 312396
reactant: 312384
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Photon[e] <=> Confidence Level:
fast: false
reversible: false
name: Photon exchange

574769
type: LocalParameter
value: 0.0

574768
type: LocalParameter
value: 0.0

574766
type: LocalParameter
value: 1000.0

574765
type: LocalParameter
value: 0.0

312396
type: SpeciesReference
stoichiometry: 1.0
species: 566775

566775
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Photon[e]

312384
type: SpeciesReference
stoichiometry: 1.0
species: 566774

566774
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Photon[e]

566077
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sucrose[e]

567696
type: Reaction
product: 277505
reactant: 277493
kinetic law: 277529
name: purine nucleoside phosphorylase
product: 277517
fast: false
reactant: 277481
reversible: true
notes: GPR_ASSOCIATION: RSP_2207 GENE_LIST: RSP_2207; SUBSYSTEM: Purine metabolism Equation: Guanosine + Orthophosphate <=> Guanine + alpha-D-Ribose 1-phosphate Confidence Level: 2

277505
type: SpeciesReference
stoichiometry: 1.0
species: 564820

564820
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Guanine

277493
type: SpeciesReference
stoichiometry: 1.0
species: 564369

571295
type: LocalParameter
value: 0.0

571294
type: LocalParameter
value: 0.0

571292
type: LocalParameter
value: 1000.0

571291
type: LocalParameter
value: -1000.0

277517
type: SpeciesReference
stoichiometry: 1.0
species: 565069

565069
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: alpha-D-Ribose1-phosphate

277481
type: SpeciesReference
stoichiometry: 1.0
species: 566227

566227
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Guanosine

567755
type: Reaction
name: 5-nucleotidase
reactant: 281409
notes: GPR_ASSOCIATION: RSP_0955 or RSP_2545 GENE_LIST: RSP_0955; RSP_2545; SUBSYSTEM: Pyrimidine metabolism Equation: dTMP + H2O <=> Thymidine + Orthophosphate Confidence Level: 2
product: 281421
fast: false
reactant: 281397
reversible: false
product: 281433
kinetic law: 281445

281409
type: SpeciesReference
stoichiometry: 1.0
species: 564345

281421
type: SpeciesReference
stoichiometry: 1.0
species: 566234

281397
type: SpeciesReference
stoichiometry: 1.0
species: 566232

566232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dCMP

281433
type: SpeciesReference
stoichiometry: 1.0
species: 564369

571590
type: LocalParameter
value: 0.0

571589
type: LocalParameter
value: 0.0

571587
type: LocalParameter
value: 1000.0

571586
type: LocalParameter
value: 0.0

567326
type: Reaction
reversible: true
fast: false
notes: GPR_ASSOCIATION: RSP_0113 GENE_LIST: RSP_0113; SUBSYSTEM: Glycerophospholipid metabolism Equation: Phosphatidylcholine + H2O <=> Phosphatidate + Choline + H+ Confidence Level: 2
reactant: 256059
product: 256083
product: 256108
kinetic law: 256120
product: 256095
reactant: 256071
name: phospholipase D/transphosphatidylase

256059
type: SpeciesReference
stoichiometry: 1.0
species: 564697

564697
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylcholine

256083
type: SpeciesReference
stoichiometry: 1.0
species: 564979

564979
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidate

256108
type: SpeciesReference
stoichiometry: 1.0
species: 564535

569705
type: LocalParameter
value: 0.0

569704
type: LocalParameter
value: 0.0

569703
type: LocalParameter
value: 1000.0

569702
type: LocalParameter
value: -1000.0

256095
type: SpeciesReference
stoichiometry: 1.0
species: 564610

564610
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Choline

256071
type: SpeciesReference
stoichiometry: 1.0
species: 564345

566490
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Xylitol

567725
type: Reaction
fast: false
reactant: 279426
reactant: 279414
name: RelA/SpoT family protein
notes: GPR_ASSOCIATION: RSP_1670 GENE_LIST: RSP_1670; SUBSYSTEM: Purine metabolism Equation: ATP + GTP <=> AMP + Guanosine 3'-diphosphate 5'-triphosphate + H+ Confidence Level: 2
product: 279450
kinetic law: 279475
product: 279463
product: 279438
reversible: false

279426
type: SpeciesReference
stoichiometry: 1.0
species: 564454

564454
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: GTP

279414
type: SpeciesReference
stoichiometry: 1.0
species: 564348

279450
type: SpeciesReference
stoichiometry: 1.0
species: 565697

565697
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Guanosine3'-diphosphate5'-triphosphate

571440
type: LocalParameter
value: 0.0

571439
type: LocalParameter
value: 0.0

571437
type: LocalParameter
value: 1000.0

571436
type: LocalParameter
value: 0.0

279463
type: SpeciesReference
stoichiometry: 1.0
species: 564535

279438
type: SpeciesReference
stoichiometry: 1.0
species: 564396

565946
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetylene

566946
type: Reaction
reversible: false
fast: false
notes: GPR_ASSOCIATION: RSP_3551 and RSP_4336 GENE_LIST: RSP_3551; RSP_4336; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Histidine + tRNA(His) <=> AMP + Diphosphate + L-Histidyl-tRNA(His) Confidence Level: 2
name: histidyl-tRNA synthetase
reactant: 240068
product: 240092
reactant: 240044
reactant: 240056
kinetic law: 240116
product: 240104
product: 240080

240068
type: SpeciesReference
stoichiometry: 1.0
species: 565385

565385
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(His)

240092
type: SpeciesReference
stoichiometry: 1.0
species: 564378

240044
type: SpeciesReference
stoichiometry: 1.0
species: 564348

240056
type: SpeciesReference
stoichiometry: 1.0
species: 564664

564664
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Histidine

568599
type: LocalParameter
value: 0.0

568598
type: LocalParameter
value: 0.0

568597
type: LocalParameter
value: 1000.0

568596
type: LocalParameter
value: 0.0

240104
type: SpeciesReference
stoichiometry: 1.0
species: 565505

565505
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Histidyl-tRNA(His)

240080
type: SpeciesReference
stoichiometry: 1.0
species: 564396

565901
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Hexadec-2-enoyl-[acp]

566781
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dimethylsulfoxide[e]

568185
type: Reaction
kinetic law: 306919
product: 306907
reactant: 306895
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 2',3'-Cyclic UMP[e] <=> 2',3'-Cyclic UMP[p] Confidence Level: 2
fast: false
reversible: true
name: 2',3'-Cyclic UMP transport via diffusion

574308
type: LocalParameter
value: 0.0

574306
type: LocalParameter
value: 0.0

574305
type: LocalParameter
value: 1000.0

574303
type: LocalParameter
value: -1000.0

306907
type: SpeciesReference
stoichiometry: 1.0
species: 566688

566688
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2',3'-CyclicUMP[p]

306895
type: SpeciesReference
stoichiometry: 1.0
species: 566689

566689
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicUMP[e]

567463
type: Reaction
reactant: 262781
product: 262829
product: 262853
fast: false
reactant: 262793
reversible: false
kinetic law: 262865
reactant: 262805
name: NAD synthetase
notes: GPR_ASSOCIATION: RSP_2333 GENE_LIST: RSP_2333; SUBSYSTEM: Nicotinate and nicotinamide metabolism Equation: ATP + Deamino-NAD+ + NH3 <=> AMP + Diphosphate + NAD+ + H+ Confidence Level: 2
product: 262817
product: 262841

262781
type: SpeciesReference
stoichiometry: 1.0
species: 564348

262829
type: SpeciesReference
stoichiometry: 1.0
species: 564378

262853
type: SpeciesReference
stoichiometry: 1.0
species: 564535

262793
type: SpeciesReference
stoichiometry: 1.0
species: 565196

570203
type: LocalParameter
value: 0.0

570202
type: LocalParameter
value: 0.0

570201
type: LocalParameter
value: 1000.0

570199
type: LocalParameter
value: 0.0

262805
type: SpeciesReference
stoichiometry: 1.0
species: 564381

262817
type: SpeciesReference
stoichiometry: 1.0
species: 564396

262841
type: SpeciesReference
stoichiometry: 1.0
species: 564351

565589
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Tryptophanyl-tRNA(Trp)

568341
type: Reaction
product: 317495
reactant: 317435
kinetic law: 317507
reactant: 317447
fast: false
product: 317471
notes: GPR_ASSOCIATION: RSP_4299 and ? GENE_LIST: RSP_4299; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Aspartate + tRNA(Asn) <=> AMP + Diphosphate + L-Aspartyl-tRNA(Asn) Confidence Level: 1
reactant: 317459
name: L-Aspartate:tRNAAsp ligase (AMP-forming)
product: 317483
reversible: false

317495
type: SpeciesReference
stoichiometry: 1.0
species: 565817

565817
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Aspartyl-tRNA(Asn)

317435
type: SpeciesReference
stoichiometry: 1.0
species: 564348

575177
type: LocalParameter
value: 0.0

575175
type: LocalParameter
value: 0.0

575174
type: LocalParameter
value: 1000.0

575172
type: LocalParameter
value: 0.0

317447
type: SpeciesReference
stoichiometry: 1.0
species: 564466

564466
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Aspartate

317471
type: SpeciesReference
stoichiometry: 1.0
species: 564396

317459
type: SpeciesReference
stoichiometry: 1.0
species: 566860

566860
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Asn)

317483
type: SpeciesReference
stoichiometry: 1.0
species: 564378

565176
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Sorbitol

567668
type: Reaction
reactant: 275542
fast: false
notes: GPR_ASSOCIATION: RSP_4009 or RSP_1255 GENE_LIST: RSP_4009; RSP_1255; SUBSYSTEM: Propanoate metabolism Equation: Propanoyl-CoA + Orthophosphate <=> Propanoyl phosphate + CoA Confidence Level: 2
kinetic law: 275578
reactant: 275530
product: 275566
reversible: true
product: 275554
name: phosphotransacetylase

275542
type: SpeciesReference
stoichiometry: 1.0
species: 564369

571140
type: LocalParameter
value: 0.0

571138
type: LocalParameter
value: 0.0

571137
type: LocalParameter
value: 1000.0

571136
type: LocalParameter
value: -1000.0

275530
type: SpeciesReference
stoichiometry: 1.0
species: 564583

275566
type: SpeciesReference
stoichiometry: 1.0
species: 566486

566486
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Propanoylphosphate

275554
type: SpeciesReference
stoichiometry: 1.0
species: 564372

566226
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Amino-4-imidazolecarboxyamide

568099
type: Reaction
kinetic law: 302995
product: 302983
fast: false
name: (S)-Lactate via proton symport
reactant: 302947
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: (S)-Lactate[p] + H+[p] <=> (S)-Lactate + H+ Confidence Level: 1
reversible: false
reactant: 302959
product: 302971

573840
type: LocalParameter
value: 0.0

573839
type: LocalParameter
value: 0.0

573837
type: LocalParameter
value: 1000.0

573836
type: LocalParameter
value: 0.0

302983
type: SpeciesReference
stoichiometry: 1.0
species: 564535

302947
type: SpeciesReference
stoichiometry: 1.0
species: 566576

566576
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (S)-Lactate[p]

302959
type: SpeciesReference
stoichiometry: 1.0
species: 566248

302971
type: SpeciesReference
stoichiometry: 1.0
species: 564745

564745
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Lactate

568158
type: Reaction
kinetic law: 305603
product: 305591
reactant: 305579
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Nitrite[e] <=> Nitrite[p] Confidence Level: 2
fast: false
reversible: true
name: Nitrite transport via diffusion

574159
type: LocalParameter
value: 0.0

574158
type: LocalParameter
value: 0.0

574156
type: LocalParameter
value: 1000.0

574155
type: LocalParameter
value: -1000.0

305591
type: SpeciesReference
stoichiometry: 1.0
species: 566652

566652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Nitrite[p]

305579
type: SpeciesReference
stoichiometry: 1.0
species: 566653

566653
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nitrite[e]

567292
type: Reaction
name: putative glutathione synthetase
product: 254800
kinetic law: 254837
fast: false
product: 254825
reactant: 254776
product: 254788
reversible: true
reactant: 254752
reactant: 254764
product: 254812
notes: GPR_ASSOCIATION: RSP_1005 GENE_LIST: RSP_1005; SUBSYSTEM: Glutathione metabolism Equation: ATP + L-Glutamate + L-Cysteine <=> ADP + Orthophosphate + gamma-L-Glutamyl-L-cysteine Confidence Level: 3

254800
type: SpeciesReference
stoichiometry: 1.0
species: 564369

569625
type: LocalParameter
value: 0.0

569624
type: LocalParameter
value: 0.0

569623
type: LocalParameter
value: 1000.0

569622
type: LocalParameter
value: -1000.0

254825
type: SpeciesReference
stoichiometry: 1.0
species: 564535

254776
type: SpeciesReference
stoichiometry: 1.0
species: 564577

564577
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Cysteine

254788
type: SpeciesReference
stoichiometry: 1.0
species: 564366

254752
type: SpeciesReference
stoichiometry: 1.0
species: 564348

254764
type: SpeciesReference
stoichiometry: 1.0
species: 564408

254812
type: SpeciesReference
stoichiometry: 1.0
species: 565096

565096
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: gamma-L-Glutamyl-L-cysteine

567382
type: Reaction
product: 258830
reactant: 258805
fast: false
product: 258818
product: 258842
name: isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase
kinetic law: 258854
reversible: true
notes: GPR_ASSOCIATION: RSP_3389 or RSP_3388 or RSP_4031 GENE_LIST: RSP_3389; RSP_3388; RSP_4031; SUBSYSTEM: Glyoxylate and dicarboxylate metabolism Equation: meso-Tartaric acid + NAD+ <=> 2-Hydroxy-3-oxosuccinate + NADH + H+ Confidence Level: 4
reactant: 258793

258830
type: SpeciesReference
stoichiometry: 1.0
species: 564354

258805
type: SpeciesReference
stoichiometry: 1.0
species: 564351

258818
type: SpeciesReference
stoichiometry: 1.0
species: 565574

565574
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Hydroxy-3-oxosuccinate

258842
type: SpeciesReference
stoichiometry: 1.0
species: 564535

569917
type: LocalParameter
value: 0.0

569916
type: LocalParameter
value: 0.0

569915
type: LocalParameter
value: 1000.0

569914
type: LocalParameter
value: -1000.0

258793
type: SpeciesReference
stoichiometry: 1.0
species: 565051

565051
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: meso-Tartaricacid

566123
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UroporphyrinogenI

566026
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Molybdate[p]

567704
type: Reaction
product: 277997
reversible: true
product: 277985
notes: GPR_ASSOCIATION: RSP_2914 GENE_LIST: RSP_2914; SUBSYSTEM: Purine metabolism Equation: Xanthosine + H2O <=> Xanthine + D-Ribose Confidence Level: 2
kinetic law: 278009
reactant: 277961
name: nucleoside hydrolase
reactant: 277973
fast: false

277997
type: SpeciesReference
stoichiometry: 1.0
species: 564628

564628
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribose

277985
type: SpeciesReference
stoichiometry: 1.0
species: 564958

564958
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Xanthine

571335
type: LocalParameter
value: 0.0

571334
type: LocalParameter
value: 0.0

571332
type: LocalParameter
value: 1000.0

571331
type: LocalParameter
value: -1000.0

277961
type: SpeciesReference
stoichiometry: 1.0
species: 566230

566230
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Xanthosine

277973
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567584
type: Reaction
reactant: 269626
name: anthranilate phosphoribosyltransferase
fast: false
notes: GPR_ASSOCIATION: RSP_2001 GENE_LIST: RSP_2001; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: N-(5-Phospho-D-ribosyl)anthranilate + Diphosphate <=> Anthranilate + 5-Phospho-alpha-D-ribose 1-diphosphate Confidence Level: 2
product: 269651
product: 269664
reversible: true
kinetic law: 269676
reactant: 269639

269626
type: SpeciesReference
stoichiometry: 1.0
species: 565661

565661
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-(5-Phospho-D-ribosyl)anthranilate

269651
type: SpeciesReference
stoichiometry: 1.0
species: 564598

564598
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Anthranilate

269664
type: SpeciesReference
stoichiometry: 1.0
species: 564622

564622
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Phospho-alpha-D-ribose1-diphosphate

570703
type: LocalParameter
value: 0.0

570701
type: LocalParameter
value: 0.0

570700
type: LocalParameter
value: 1000.0

570699
type: LocalParameter
value: -1000.0

269639
type: SpeciesReference
stoichiometry: 1.0
species: 564378

564997
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Formimino-L-glutamate

566334
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-4-Hydroxy-L-proline

567613
type: Reaction
notes: GPR_ASSOCIATION: RSP_2820 or RSP_1944 GENE_LIST: RSP_2820; RSP_1944; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 2 S-Adenosyl-L-methionine + Uroporphyrinogen III + H+ <=> 2 S-Adenosyl-L-homocysteine + Precorrin 2 Confidence Level: 2
fast: false
reversible: true
name: uroporphyrin-III C-methyltransferase
product: 271589
reactant: 271564
reactant: 271552
reactant: 271540
product: 271576
kinetic law: 271601

271589
type: SpeciesReference
stoichiometry: 1.0
species: 565454

565454
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Precorrin2

271564
type: SpeciesReference
stoichiometry: 1.0
species: 564535

271552
type: SpeciesReference
stoichiometry: 1.0
species: 565256

565256
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UroporphyrinogenIII

271540
type: SpeciesReference
stoichiometry: 2.0
species: 564393

564393
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: S-Adenosyl-L-methionine

271576
type: SpeciesReference
stoichiometry: 2.0
species: 564399

564399
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: S-Adenosyl-L-homocysteine

570852
type: LocalParameter
value: 0.0

570850
type: LocalParameter
value: 0.0

570849
type: LocalParameter
value: 1000.0

570848
type: LocalParameter
value: -1000.0

566470
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-2,3-Dihydroxy-3-methylpentanoate

565868
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate

566053
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-proline[e]

567264
type: Reaction
product: 253647
reactant: 253598
product: 253634
product: 253671
reversible: true
kinetic law: 253683
name: folylpolyglutamate synthetase
fast: false
product: 253659
reactant: 253622
notes: GPR_ASSOCIATION: RSP_0930 GENE_LIST: RSP_0930; SUBSYSTEM: Folate biosynthesis Equation: ATP + Dihydropteroate + L-Glutamate <=> ADP + Orthophosphate + Dihydrofolate Confidence Level: 2
reactant: 253610

253647
type: SpeciesReference
stoichiometry: 1.0
species: 564369

253598
type: SpeciesReference
stoichiometry: 1.0
species: 564348

253634
type: SpeciesReference
stoichiometry: 1.0
species: 564366

253671
type: SpeciesReference
stoichiometry: 1.0
species: 564535

569549
type: LocalParameter
value: 0.0

569548
type: LocalParameter
value: 0.0

569547
type: LocalParameter
value: 1000.0

569546
type: LocalParameter
value: -1000.0

253659
type: SpeciesReference
stoichiometry: 1.0
species: 564976

564976
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dihydrofolate

253622
type: SpeciesReference
stoichiometry: 1.0
species: 564408

253610
type: SpeciesReference
stoichiometry: 1.0
species: 565220

565220
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dihydropteroate

564562
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glucose6-phosphate

567527
type: Reaction
kinetic law: 266356
product: 266344
reactant: 266332
notes: GPR_ASSOCIATION: RSP_1176 GENE_LIST: RSP_1176; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Xylose <=> D-Xylulose Confidence Level: 2
fast: false
reversible: true
name: xylose isomerase

570442
type: LocalParameter
value: 0.0

570440
type: LocalParameter
value: 0.0

570439
type: LocalParameter
value: 1000.0

570438
type: LocalParameter
value: -1000.0

266344
type: SpeciesReference
stoichiometry: 1.0
species: 564889

564889
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Xylulose

266332
type: SpeciesReference
stoichiometry: 1.0
species: 566094

566094
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Xylose

565909
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Tetrahydrofolyl-[Glu](2)

567555
type: Reaction
fast: false
kinetic law: 267638
product: 267602
product: 267626
name: D-isomer specific 2-hydroxyacid dehydrogenase
reactant: 267590
product: 267614
notes: GPR_ASSOCIATION: RSP_3366 GENE_LIST: RSP_3366; SUBSYSTEM: Pentose phosphate pathway Equation: D-Gluconic acid + NADP+ <=> 2-Keto-D-gluconic acid + NADPH + H+ Confidence Level: 2
reversible: true
reactant: 267578

570554
type: LocalParameter
value: 0.0

570552
type: LocalParameter
value: 0.0

570551
type: LocalParameter
value: 1000.0

570550
type: LocalParameter
value: -1000.0

267602
type: SpeciesReference
stoichiometry: 1.0
species: 565837

565837
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Keto-D-gluconicacid

267626
type: SpeciesReference
stoichiometry: 1.0
species: 564535

267590
type: SpeciesReference
stoichiometry: 1.0
species: 564360

267614
type: SpeciesReference
stoichiometry: 1.0
species: 564357

267578
type: SpeciesReference
stoichiometry: 1.0
species: 564841

564841
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Gluconicacid

567884
type: Reaction
fast: false
reactant: 291077
product: 291089
name: ABC L-Glycine transporter
kinetic law: 291138
product: 291101
reversible: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Glycine[p] <=> ADP + H+ + Orthophosphate + Glycine Confidence Level: 2
product: 291113
product: 291126
reactant: 291065
reactant: 291052

291077
type: SpeciesReference
stoichiometry: 1.0
species: 566324

566324
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glycine[p]

291089
type: SpeciesReference
stoichiometry: 1.0
species: 564366

572652
type: LocalParameter
value: 0.0

572650
type: LocalParameter
value: 0.0

572649
type: LocalParameter
value: 1000.0

572648
type: LocalParameter
value: 0.0

291101
type: SpeciesReference
stoichiometry: 1.0
species: 564535

291113
type: SpeciesReference
stoichiometry: 1.0
species: 564369

291126
type: SpeciesReference
stoichiometry: 1.0
species: 564436

564436
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycine

291065
type: SpeciesReference
stoichiometry: 1.0
species: 564345

291052
type: SpeciesReference
stoichiometry: 1.0
species: 564348

568235
type: Reaction
kinetic law: 309463
product: 309451
reactant: 309439
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Acetamide[e] <=> Confidence Level:
fast: false
reversible: false
name: Acetamide exchange

574582
type: LocalParameter
value: 0.0

574581
type: LocalParameter
value: 0.0

574579
type: LocalParameter
value: 1000.0

574578
type: LocalParameter
value: 0.0

309451
type: SpeciesReference
stoichiometry: 1.0
species: 566749

566749
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Acetamide[e]

309439
type: SpeciesReference
stoichiometry: 1.0
species: 566747

566747
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Acetamide[e]

567455
type: Reaction
notes: GPR_ASSOCIATION: RSP_2207 GENE_LIST: RSP_2207; SUBSYSTEM: Nicotinate and nicotinamide metabolism Equation: N-Ribosylnicotinamide + Orthophosphate <=> Nicotinamide + alpha-D-Ribose 1-phosphate + H+ Confidence Level: 2
reversible: false
product: 262380
name: purine nucleoside phosphorylase
reactant: 262356
fast: false
product: 262393
kinetic law: 262418
product: 262405
reactant: 262368

262380
type: SpeciesReference
stoichiometry: 1.0
species: 564691

564691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Nicotinamide

262356
type: SpeciesReference
stoichiometry: 1.0
species: 566228

566228
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Ribosylnicotinamide

262393
type: SpeciesReference
stoichiometry: 1.0
species: 565069

570176
type: LocalParameter
value: 0.0

570175
type: LocalParameter
value: 0.0

570174
type: LocalParameter
value: 1000.0

570173
type: LocalParameter
value: 0.0

262405
type: SpeciesReference
stoichiometry: 1.0
species: 564535

262368
type: SpeciesReference
stoichiometry: 1.0
species: 564369

564469
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glutathione

568229
type: Reaction
kinetic law: 309161
name: D-1-Aminopropan-2-ol O-phosphate via proton symport
fast: false
product: 309137
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: D-1-Aminopropan-2-ol O-phosphate[p] + H+[p] <=> D-1-Aminopropan-2-ol O-phosphate + H+ Confidence Level: 1
product: 309149
reactant: 309125
reactant: 309113
reversible: true

574549
type: LocalParameter
value: 0.0

574548
type: LocalParameter
value: 0.0

574546
type: LocalParameter
value: 1000.0

574545
type: LocalParameter
value: -1000.0

309137
type: SpeciesReference
stoichiometry: 1.0
species: 565640

565640
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-1-Aminopropan-2-olO-phosphate

309149
type: SpeciesReference
stoichiometry: 1.0
species: 564535

309125
type: SpeciesReference
stoichiometry: 1.0
species: 566248

309113
type: SpeciesReference
stoichiometry: 1.0
species: 566742

566742
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-1-Aminopropan-2-olO-phosphate[p]

565181
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyribose

568072
type: Reaction
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Formate[p] + H+[p] <=> Formate + H+ Confidence Level: 1
kinetic law: 301811
reactant: 301763
name: Formate via proton symport
reversible: true
product: 301799
product: 301787
reactant: 301775

573692
type: LocalParameter
value: 0.0

573691
type: LocalParameter
value: 0.0

573689
type: LocalParameter
value: 1000.0

573688
type: LocalParameter
value: -1000.0

301763
type: SpeciesReference
stoichiometry: 1.0
species: 566540

566540
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Formate[p]

301799
type: SpeciesReference
stoichiometry: 1.0
species: 564535

301787
type: SpeciesReference
stoichiometry: 1.0
species: 564484

564484
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Formate

301775
type: SpeciesReference
stoichiometry: 1.0
species: 566248

567798
type: Reaction
product: 284416
reversible: false
reactant: 284379
product: 284404
kinetic law: 284428
notes: GPR_ASSOCIATION: RSP_0393 GENE_LIST: RSP_0393; SUBSYSTEM: Riboflavin metabolism Equation: 2,5-Diamino-6-(5'-phosphoribosylamino)-4-pyrimidineone + H2O <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + NH3 Confidence Level: 2
name: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
fast: false
reactant: 284392

284416
type: SpeciesReference
stoichiometry: 1.0
species: 564381

284379
type: SpeciesReference
stoichiometry: 1.0
species: 565349

565349
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,5-Diamino-6-(5'-phosphoribosylamino)-4-pyrimidineone

284404
type: SpeciesReference
stoichiometry: 1.0
species: 565334

565334
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Amino-6-(5'-phosphoribosylamino)uracil

572180
type: LocalParameter
value: 0.0

572178
type: LocalParameter
value: 0.0

572177
type: LocalParameter
value: 1000.0

572175
type: LocalParameter
value: 0.0

284392
type: SpeciesReference
stoichiometry: 1.0
species: 564345

565009
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans,trans-Farnesyldiphosphate

565793
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Methylcytosine

567094
type: Reaction
kinetic law: 246768
product: 246756
reactant: 246744
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: betaine[e] <=> Confidence Level:
fast: false
reversible: false
name: glycine betaine exchange

569051
type: LocalParameter
value: 0.0

569050
type: LocalParameter
value: 0.0

569049
type: LocalParameter
value: 1000.0

569048
type: LocalParameter
value: 0.0

246756
type: SpeciesReference
stoichiometry: 1.0
species: 566051

566051
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: betaine[e]

246744
type: SpeciesReference
stoichiometry: 1.0
species: 566049

566049
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: betaine[e]

566786
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,5-Diaminopyrimidinenucleosidetriphosphate

564718
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Carbamoylphosphate

568058
type: Reaction
kinetic law: 301073
product: 301061
reactant: 301049
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-phenylalanine[e] <=> Confidence Level:
fast: false
reversible: false
name: L-phenylalanine exchange

573615
type: LocalParameter
value: 0.0

573614
type: LocalParameter
value: 0.0

573612
type: LocalParameter
value: 1000.0

573611
type: LocalParameter
value: 0.0

301061
type: SpeciesReference
stoichiometry: 1.0
species: 566522

566522
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Phenylalanine[e]

301049
type: SpeciesReference
stoichiometry: 1.0
species: 566521

566521
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Phenylalanine[e]

566741
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Chitobiose[e]

567184
type: Reaction
reactant: 250085
reactant: 250109
reactant: 250097
notes: GPR_ASSOCIATION: RSP_3888 or RSP_3440 or RSP_3062 or RSP_2538 or RSP_2461 or RSP_2371 or RSP_0610 GENE_LIST: RSP_3888; RSP_3440; RSP_3062; RSP_2538; RSP_2461; RSP_2371; RSP_0610; SUBSYSTEM: Fatty acid biosynthesis Equation: 3-Oxostearoyl-[acp] + NADPH + H+ <=> 3-Hydroxyoctadecanoyl-[acp] + NADP+ Confidence Level: 2
reversible: true
name: 3-oxoacyl-[acyl-carrier-protein] reductase
product: 250121
product: 250133
kinetic law: 250146
fast: false

250085
type: SpeciesReference
stoichiometry: 1.0
species: 566432

566432
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxostearoyl-[acp]

250109
type: SpeciesReference
stoichiometry: 1.0
species: 564535

250097
type: SpeciesReference
stoichiometry: 1.0
species: 564357

250121
type: SpeciesReference
stoichiometry: 1.0
species: 566433

566433
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Hydroxyoctadecanoyl-[acp]

250133
type: SpeciesReference
stoichiometry: 1.0
species: 564360

569316
type: LocalParameter
value: 0.0

569315
type: LocalParameter
value: 0.0

569314
type: LocalParameter
value: 1000.0

569313
type: LocalParameter
value: -1000.0

568148
type: Reaction
kinetic law: 305156
product: 305144
reactant: 305132
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Ethanol[e] <=> Confidence Level:
fast: false
reversible: false
name: Ethanol exchange

574104
type: LocalParameter
value: 0.0

574103
type: LocalParameter
value: 0.0

574101
type: LocalParameter
value: 1000.0

574100
type: LocalParameter
value: 0.0

305144
type: SpeciesReference
stoichiometry: 1.0
species: 566642

566642
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Ethanol[e]

305132
type: SpeciesReference
stoichiometry: 1.0
species: 566641

566641
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Ethanol[e]

566175
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glutathione[e]

568280
type: Reaction
product: 312929
reactant: 312904
reactant: 312891
product: 312917
kinetic law: 312953
reversible: false
product: 312941
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Folate biosynthesis Equation: 2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate + 3 H2O <=> 2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine + 3 Orthophosphate + H+ Confidence Level: 1
fast: false

312929
type: SpeciesReference
stoichiometry: 3.0
species: 564369

312904
type: SpeciesReference
stoichiometry: 3.0
species: 564345

312891
type: SpeciesReference
stoichiometry: 1.0
species: 566788

566788
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine

312917
type: SpeciesReference
stoichiometry: 1.0
species: 565769

565769
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-

574830
type: LocalParameter
value: 0.0

574828
type: LocalParameter
value: 0.0

574827
type: LocalParameter
value: 1000.0

574825
type: LocalParameter
value: 0.0

312941
type: SpeciesReference
stoichiometry: 3.0
species: 564535

567426
type: Reaction
kinetic law: 260984
fast: false
reversible: false
reactant: 260948
reactant: 260936
product: 260960
product: 260972
reactant: 260924
notes: GPR_ASSOCIATION: RSP_3849 GENE_LIST: RSP_3849; SUBSYSTEM: Lipopolysaccharide biosynthesis Equation: Phosphoenolpyruvate + D-Arabinose 5-phosphate + H2O <=> 3-Deoxy-D-manno-octulosonate 8-phosphate + Orthophosphate Confidence Level: 2
name: 2-dehydro-3-deoxyphosphooctonate aldolase

570072
type: LocalParameter
value: 0.0

570071
type: LocalParameter
value: 0.0

570070
type: LocalParameter
value: 1000.0

570068
type: LocalParameter
value: 0.0

260948
type: SpeciesReference
stoichiometry: 1.0
species: 564345

260936
type: SpeciesReference
stoichiometry: 1.0
species: 565283

565283
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Arabinose5-phosphate

260960
type: SpeciesReference
stoichiometry: 1.0
species: 565694

565694
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Deoxy-D-manno-octulosonate8-phosphate

260972
type: SpeciesReference
stoichiometry: 1.0
species: 564369

260924
type: SpeciesReference
stoichiometry: 1.0
species: 564520

564520
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphoenolpyruvate

567915
type: Reaction
kinetic law: 293421
product: 293409
reactant: 293397
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-leucine[e] <=> L-leucine[p] Confidence Level: 2
fast: false
reversible: true
name: L-leucine transport via diffusion

572822
type: LocalParameter
value: 0.0

572820
type: LocalParameter
value: 0.0

572819
type: LocalParameter
value: 1000.0

572817
type: LocalParameter
value: -1000.0

293409
type: SpeciesReference
stoichiometry: 1.0
species: 566148

566148
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Leucine[p]

293397
type: SpeciesReference
stoichiometry: 1.0
species: 566150

566150
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Leucine[e]

567634
type: Reaction
reactant: 273198
kinetic law: 273246
fast: false
notes: GPR_ASSOCIATION: RSP_1508 GENE_LIST: RSP_1508; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Protoporphyrinogen IX + 3 Oxygen <=> Protoporphyrin + 3 H2O2 Confidence Level: 2
reversible: false
reactant: 273210
product: 273222
product: 273234

273198
type: SpeciesReference
stoichiometry: 1.0
species: 565262

565262
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: ProtoporphyrinogenIX

570961
type: LocalParameter
value: 0.0

570959
type: LocalParameter
value: 0.0

570958
type: LocalParameter
value: 1000.0

570957
type: LocalParameter
value: 0.0

273210
type: SpeciesReference
stoichiometry: 3.0
species: 564363

273222
type: SpeciesReference
stoichiometry: 1.0
species: 565442

565442
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Protoporphyrin

273234
type: SpeciesReference
stoichiometry: 3.0
species: 564418

564418
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: H2O2

567604
type: Reaction
reactant: 270983
reversible: false
kinetic law: 271068
reactant: 271007
name: coproporphyrinogen III oxidase
reactant: 270995
product: 271056
product: 271019
notes: GPR_ASSOCIATION: RSP_0317 or RSP_0699 or RSP_1224 GENE_LIST: RSP_0317; RSP_0699; RSP_1224; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Coproporphyrinogen III + 2 S-Adenosyl-L-methionine + 2 H+ <=> Protoporphyrinogen IX + 2 CO2 + 2 L-Methionine + 2 5'-Deoxyadenosine Confidence Level: 4
product: 271044
fast: false
product: 271032

270983
type: SpeciesReference
stoichiometry: 1.0
species: 565538

565538
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CoproporphyrinogenIII

570807
type: LocalParameter
value: 0.0

570805
type: LocalParameter
value: 0.0

570804
type: LocalParameter
value: 1000.0

570803
type: LocalParameter
value: 0.0

271007
type: SpeciesReference
stoichiometry: 2.0
species: 564535

270995
type: SpeciesReference
stoichiometry: 2.0
species: 564393

271056
type: SpeciesReference
stoichiometry: 2.0
species: 565784

565784
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5'-Deoxyadenosine

271019
type: SpeciesReference
stoichiometry: 1.0
species: 565262

271044
type: SpeciesReference
stoichiometry: 2.0
species: 564517

564517
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Methionine

271032
type: SpeciesReference
stoichiometry: 2.0
species: 564375

568287
type: Reaction
reactant: 313482
kinetic law: 313542
fast: false
product: 313518
product: 313530
reversible: false
reactant: 313494
notes: GPR_ASSOCIATION: RSP_1041 GENE_LIST: RSP_1041; SUBSYSTEM: Glycerophospholipid metabolism Equation: ATP + Octadecanoic acid + CoA <=> AMP + Diphosphate + Acyl-CoA Confidence Level: 1
product: 313506
reactant: 313470

313482
type: SpeciesReference
stoichiometry: 1.0
species: 566789

566789
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Octadecanoicacid

574868
type: LocalParameter
value: 0.0

574867
type: LocalParameter
value: 0.0

574865
type: LocalParameter
value: 1000.0

574864
type: LocalParameter
value: 0.0

313518
type: SpeciesReference
stoichiometry: 1.0
species: 564396

313530
type: SpeciesReference
stoichiometry: 1.0
species: 564442

564442
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acyl-CoA

313494
type: SpeciesReference
stoichiometry: 1.0
species: 564372

313506
type: SpeciesReference
stoichiometry: 1.0
species: 564378

313470
type: SpeciesReference
stoichiometry: 1.0
species: 564348

566343
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Biotinyl-5'-AMP

567158
type: Reaction
fast: false
reactant: 248831
reversible: true
reactant: 248818
name: 3-oxoacyl-[acyl-carrier-protein] synthase III
notes: GPR_ASSOCIATION: RSP_2612 GENE_LIST: RSP_2612; SUBSYSTEM: Fatty acid biosynthesis Equation: Acetyl-CoA + Acyl-carrier protein + H+ <=> CoA + Acetyl-[acyl-carrier protein] Confidence Level: 3
product: 248868
kinetic law: 248880
reactant: 248844
product: 248856

248831
type: SpeciesReference
stoichiometry: 1.0
species: 564802

564802
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acyl-carrierprotein

248818
type: SpeciesReference
stoichiometry: 1.0
species: 564405

248868
type: SpeciesReference
stoichiometry: 1.0
species: 565898

565898
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetyl-[acyl-carrierprotein]

569240
type: LocalParameter
value: 0.0

569239
type: LocalParameter
value: 0.0

569238
type: LocalParameter
value: 1000.0

569237
type: LocalParameter
value: -1000.0

248844
type: SpeciesReference
stoichiometry: 1.0
species: 564535

248856
type: SpeciesReference
stoichiometry: 1.0
species: 564372

567833
type: Reaction
kinetic law: 286804
fast: false
notes: GPR_ASSOCIATION: RSP_2835 GENE_LIST: RSP_2835; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 2-C-Methyl-D-erythritol 4-phosphate + CTP + H+ <=> 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol + Diphosphate Confidence Level: 2
product: 286779
reactant: 286767
reactant: 286743
product: 286792
reactant: 286755
reversible: true
name: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

572371
type: LocalParameter
value: 0.0

572369
type: LocalParameter
value: 0.0

572368
type: LocalParameter
value: 1000.0

572366
type: LocalParameter
value: -1000.0

286779
type: SpeciesReference
stoichiometry: 1.0
species: 565855

565855
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-(Cytidine5'-diphospho)-2-C-methyl-D-erythritol

286767
type: SpeciesReference
stoichiometry: 1.0
species: 564535

286743
type: SpeciesReference
stoichiometry: 1.0
species: 565853

565853
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-C-Methyl-D-erythritol4-phosphate

286792
type: SpeciesReference
stoichiometry: 1.0
species: 564378

286755
type: SpeciesReference
stoichiometry: 1.0
species: 564499

565700
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-alpha-D-glucosamine1-phosphate

567771
type: Reaction
product: 282462
reactant: 282426
fast: false
kinetic law: 282474
notes: GPR_ASSOCIATION: RSP_0183 or RSP_3462 GENE_LIST: RSP_0183; RSP_3462; SUBSYSTEM: Pyrimidine metabolism Equation: 5,6-Dihydrothymine + H2O <=> 3-Ureidoisobutyrate + H+ Confidence Level: 2
product: 282450
name: phenylhydantoinase
reactant: 282438
reversible: true

282462
type: SpeciesReference
stoichiometry: 1.0
species: 564535

282426
type: SpeciesReference
stoichiometry: 1.0
species: 565790

565790
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,6-Dihydrothymine

571670
type: LocalParameter
value: 0.0

571669
type: LocalParameter
value: 0.0

571667
type: LocalParameter
value: 1000.0

571666
type: LocalParameter
value: -1000.0

282450
type: SpeciesReference
stoichiometry: 1.0
species: 566336

566336
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Ureidoisobutyrate

282438
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567342
type: Reaction
product: 256797
product: 256785
reactant: 256761
fast: false
kinetic law: 256809
reactant: 256773
reversible: true
name: serine-pyruvate aminotransferase/aspartate aminotransferase
notes: GPR_ASSOCIATION: RSP_0245 GENE_LIST: RSP_0245; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: L-Serine + Glyoxylate <=> Hydroxypyruvate + Glycine Confidence Level: 2

256797
type: SpeciesReference
stoichiometry: 1.0
species: 564436

256785
type: SpeciesReference
stoichiometry: 1.0
species: 564715

564715
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxypyruvate

256761
type: SpeciesReference
stoichiometry: 1.0
species: 564505

564505
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Serine

569755
type: LocalParameter
value: 0.0

569753
type: LocalParameter
value: 0.0

569752
type: LocalParameter
value: 1000.0

569751
type: LocalParameter
value: -1000.0

256773
type: SpeciesReference
stoichiometry: 1.0
species: 564463

564463
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glyoxylate

568305
type: Reaction
name: Methanethiol via proton symport
product: 314692
reversible: true
reactant: 314667
kinetic law: 314704
reactant: 314655
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Methanethiol[p] + H+[p] <=> Methanethiol + H+ Confidence Level: 1
product: 314679

314692
type: SpeciesReference
stoichiometry: 1.0
species: 564535

314667
type: SpeciesReference
stoichiometry: 1.0
species: 566248

574979
type: LocalParameter
value: 0.0

574977
type: LocalParameter
value: 0.0

574976
type: LocalParameter
value: 1000.0

574974
type: LocalParameter
value: -1000.0

314655
type: SpeciesReference
stoichiometry: 1.0
species: 566816

566816
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Methanethiol[p]

314679
type: SpeciesReference
stoichiometry: 1.0
species: 564973

564973
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Methanethiol

567394
type: Reaction
reactant: 259338
name: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
product: 259362
fast: false
notes: GPR_ASSOCIATION: RSP_0661 GENE_LIST: RSP_0661; SUBSYSTEM: Glyoxylate and dicarboxylate metabolism Equation: 5,10-Methylenetetrahydrofolate + NADP+ <=> 5,10-Methenyltetrahydrofolate + NADPH Confidence Level: 2
product: 259350
kinetic law: 259374
reactant: 259326
reversible: true

259338
type: SpeciesReference
stoichiometry: 1.0
species: 564360

259362
type: SpeciesReference
stoichiometry: 1.0
species: 564357

259350
type: SpeciesReference
stoichiometry: 1.0
species: 565006

565006
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,10-Methenyltetrahydrofolate

569952
type: LocalParameter
value: 0.0

569951
type: LocalParameter
value: 0.0

569950
type: LocalParameter
value: 1000.0

569949
type: LocalParameter
value: -1000.0

259326
type: SpeciesReference
stoichiometry: 1.0
species: 564673

564673
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5,10-Methylenetetrahydrofolate

565918
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Diacylglyceryl-N,N,N-trimethylhomoserine

567968
type: Reaction
kinetic law: 295347
product: 295335
reactant: 295323
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 3'-GMP[e] <=> 3'-GMP[p] Confidence Level: 2
fast: false
reversible: true
name: 3'-GMP transport via diffusion

573116
type: LocalParameter
value: 0.0

573115
type: LocalParameter
value: 0.0

573113
type: LocalParameter
value: 1000.0

573112
type: LocalParameter
value: -1000.0

295335
type: SpeciesReference
stoichiometry: 1.0
species: 566308

566308
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3'-GMP[p]

295323
type: SpeciesReference
stoichiometry: 1.0
species: 566310

566310
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3'-GMP[e]

566803
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 5'-Methylthioadenosine[p]

565376
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Cys)

565829
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Precorrin3B

567875
type: Reaction
reversible: false
name: ABC xylose transporter
reactant: 290194
product: 290254
kinetic law: 290278
reactant: 290218
product: 290230
product: 290266
fast: false
reactant: 290206
notes: GPR_ASSOCIATION: (RSP_1178 and RSP_1179 and RSP_1180) or (RSP_3701 and RSP_3703 and RSP_3702) GENE_LIST: RSP_1178; RSP_1179; RSP_1180; RSP_3701; RSP_3703; RSP_3702; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + D-xylose[p] <=> ADP + H+ + Orthophosphate + D-xylose Confidence Level: 2
product: 290242

290194
type: SpeciesReference
stoichiometry: 1.0
species: 564348

290254
type: SpeciesReference
stoichiometry: 1.0
species: 564369

572603
type: LocalParameter
value: 0.0

572601
type: LocalParameter
value: 0.0

572600
type: LocalParameter
value: 1000.0

572598
type: LocalParameter
value: 0.0

290218
type: SpeciesReference
stoichiometry: 1.0
species: 566095

566095
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Xylose[p]

290230
type: SpeciesReference
stoichiometry: 1.0
species: 564366

290266
type: SpeciesReference
stoichiometry: 1.0
species: 566094

290206
type: SpeciesReference
stoichiometry: 1.0
species: 564345

290242
type: SpeciesReference
stoichiometry: 1.0
species: 564535

565036
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: ADP-glucose

568037
type: Reaction
name: aminotransferase
reactant: 299784
reactant: 299772
product: 299808
fast: false
notes: GPR_ASSOCIATION: RSP_0943 GENE_LIST: RSP_0943; SUBSYSTEM: Taurine and hypotaurine metabolism Equation: Taurine + Pyruvate <=> Sulfoacetaldehyde + L-Alanine Confidence Level: 2
reversible: true
kinetic law: 299820
product: 299796

299784
type: SpeciesReference
stoichiometry: 1.0
species: 564402

564402
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyruvate

299772
type: SpeciesReference
stoichiometry: 1.0
species: 565976

565976
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Taurine

299808
type: SpeciesReference
stoichiometry: 1.0
species: 564445

564445
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Alanine

573500
type: LocalParameter
value: 0.0

573498
type: LocalParameter
value: 0.0

573497
type: LocalParameter
value: 1000.0

573495
type: LocalParameter
value: -1000.0

299796
type: SpeciesReference
stoichiometry: 1.0
species: 566485

564511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thiamindiphosphate

565742
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxododecanoyl-CoA

567685
type: Reaction
notes: GPR_ASSOCIATION: RSP_1836 GENE_LIST: RSP_1836; SUBSYSTEM: Purine metabolism Equation: 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide + Diphosphate + H+ <=> 5-Amino-4-imidazolecarboxyamide + 5-Phospho-alpha-D-ribose 1-diphosphate Confidence Level: 2
reactant: 276828
product: 276852
fast: false
product: 276840
reactant: 276816
kinetic law: 276864
reversible: true
name: adenine phosphoribosyltransferase
reactant: 276804

276828
type: SpeciesReference
stoichiometry: 1.0
species: 564535

276852
type: SpeciesReference
stoichiometry: 1.0
species: 564622

276840
type: SpeciesReference
stoichiometry: 1.0
species: 566226

276816
type: SpeciesReference
stoichiometry: 1.0
species: 564378

571228
type: LocalParameter
value: 0.0

571226
type: LocalParameter
value: 0.0

571225
type: LocalParameter
value: 1000.0

571224
type: LocalParameter
value: -1000.0

276804
type: SpeciesReference
stoichiometry: 1.0
species: 565922

565922
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide

567256
type: Reaction
reactant: 253088
notes: GPR_ASSOCIATION: RSP_1668 GENE_LIST: RSP_1668; SUBSYSTEM: Folate biosynthesis Equation: ATP + 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine <=> AMP + 2-Amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine Confidence Level: 2
reversible: true
kinetic law: 253138
fast: false
reactant: 253100
product: 253113
name: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
product: 253126

253088
type: SpeciesReference
stoichiometry: 1.0
species: 564348

569518
type: LocalParameter
value: 0.0

569517
type: LocalParameter
value: 0.0

569516
type: LocalParameter
value: 1000.0

569515
type: LocalParameter
value: -1000.0

253100
type: SpeciesReference
stoichiometry: 1.0
species: 565343

565343
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine

253113
type: SpeciesReference
stoichiometry: 1.0
species: 564396

253126
type: SpeciesReference
stoichiometry: 1.0
species: 565757

565757
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine

567315
type: Reaction
notes: GPR_ASSOCIATION: RSP_0735 or RSP_3827 GENE_LIST: RSP_0735; RSP_3827; SUBSYSTEM: Glycerophospholipid metabolism Equation: Phosphatidate + CoA <=> 1-Acyl-sn-glycerol 3-phosphate + Acyl-CoA Confidence Level: 2
reactant: 255927
fast: false
kinetic law: 255975
reactant: 255939
product: 255963
reversible: true
product: 255951
name: phospholipid/glycerol acyltransferase

255927
type: SpeciesReference
stoichiometry: 1.0
species: 564979

569697
type: LocalParameter
value: 0.0

569696
type: LocalParameter
value: 0.0

569695
type: LocalParameter
value: 1000.0

569694
type: LocalParameter
value: -1000.0

255939
type: SpeciesReference
stoichiometry: 1.0
species: 564372

255963
type: SpeciesReference
stoichiometry: 1.0
species: 564442

255951
type: SpeciesReference
stoichiometry: 1.0
species: 565111

565111
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-Acyl-sn-glycerol3-phosphate

567690
type: Reaction
reactant: 277130
reactant: 277118
product: 277154
name: 5-nucleotidase
fast: false
product: 277142
kinetic law: 277166
notes: GPR_ASSOCIATION: RSP_0955 or RSP_2545 GENE_LIST: RSP_0955; RSP_2545; SUBSYSTEM: Purine metabolism Equation: dGMP + H2O <=> Deoxyguanosine + Orthophosphate Confidence Level: 2
reversible: false

277130
type: SpeciesReference
stoichiometry: 1.0
species: 564345

277118
type: SpeciesReference
stoichiometry: 1.0
species: 566235

566235
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dGMP

277154
type: SpeciesReference
stoichiometry: 1.0
species: 564369

277142
type: SpeciesReference
stoichiometry: 1.0
species: 564901

564901
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyguanosine

571255
type: LocalParameter
value: 0.0

571253
type: LocalParameter
value: 0.0

571252
type: LocalParameter
value: 1000.0

571250
type: LocalParameter
value: 0.0

567405
type: Reaction
notes: GPR_ASSOCIATION: RSP_0632 or RSP_2155 GENE_LIST: RSP_0632; RSP_2155; SUBSYSTEM: Histidine metabolism Equation: L-Histidinol + 2 NAD+ + H2O <=> L-Histidine + 2 NADH + 3 H+ Confidence Level: 2
kinetic law: 259870
reactant: 259820
reversible: true
product: 259832
product: 259857
reactant: 259808
name: histidinol dehydrogenase
reactant: 259796
product: 259844
fast: false

569992
type: LocalParameter
value: 0.0

569991
type: LocalParameter
value: 0.0

569990
type: LocalParameter
value: 1000.0

569988
type: LocalParameter
value: -1000.0

259820
type: SpeciesReference
stoichiometry: 1.0
species: 564345

259832
type: SpeciesReference
stoichiometry: 1.0
species: 564664

259857
type: SpeciesReference
stoichiometry: 3.0
species: 564535

259808
type: SpeciesReference
stoichiometry: 2.0
species: 564351

259796
type: SpeciesReference
stoichiometry: 1.0
species: 565199

565199
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Histidinol

259844
type: SpeciesReference
stoichiometry: 2.0
species: 564354

566457
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 7-Methyl-3-oxo-6-octenoyl-CoA

566244
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: H2O[p]

565190
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTDP-glucose

568359
type: Reaction
kinetic law: 318401
product: 318389
reactant: 318377
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: H+[e] <=> H+[p] Confidence Level: 2
fast: false
reversible: true
name: H+ transport via diffusion

575276
type: LocalParameter
value: 0.0

575274
type: LocalParameter
value: 0.0

575273
type: LocalParameter
value: 1000.0

575271
type: LocalParameter
value: -1000.0

318389
type: SpeciesReference
stoichiometry: 1.0
species: 566248

318377
type: SpeciesReference
stoichiometry: 1.0
species: 566276

566276
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: H[e]

566155
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Isoleucine[e]

566717
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxoglutarate[e]

566504
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Malyl-CoA

566582
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-Malate[e]

568364
type: Reaction
name: Sulfite via proton symport
kinetic law: 318702
fast: false
product: 318678
reactant: 318666
reactant: 318654
product: 318690
reversible: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Sulfite[p] + H+[p] <=> Sulfite + H+ Confidence Level: 1

575303
type: LocalParameter
value: 0.0

575302
type: LocalParameter
value: 0.0

575300
type: LocalParameter
value: 1000.0

575299
type: LocalParameter
value: 0.0

318678
type: SpeciesReference
stoichiometry: 1.0
species: 564568

564568
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sulfite

318666
type: SpeciesReference
stoichiometry: 1.0
species: 566248

318654
type: SpeciesReference
stoichiometry: 1.0
species: 566864

566864
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Sulfite[p]

318690
type: SpeciesReference
stoichiometry: 1.0
species: 564535

565989
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Divinylprotochlorophyllide

568174
type: Reaction
product: 306423
product: 306435
kinetic law: 306447
reactant: 306375
reversible: false
reactant: 306363
name: ABC D-Aspartate transporter
fast: false
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + D-Aspartate[p] <=> ADP + H+ + Orthophosphate + D-Aspartate Confidence Level: 1
reactant: 306387
product: 306399
product: 306411

306423
type: SpeciesReference
stoichiometry: 1.0
species: 564369

306435
type: SpeciesReference
stoichiometry: 1.0
species: 566417

566417
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Aspartate

574247
type: LocalParameter
value: 0.0

574246
type: LocalParameter
value: 0.0

574244
type: LocalParameter
value: 1000.0

574243
type: LocalParameter
value: 0.0

306375
type: SpeciesReference
stoichiometry: 1.0
species: 564345

306363
type: SpeciesReference
stoichiometry: 1.0
species: 564348

306387
type: SpeciesReference
stoichiometry: 1.0
species: 566676

566676
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Aspartate[p]

306399
type: SpeciesReference
stoichiometry: 1.0
species: 564366

306411
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567820
type: Reaction
reactant: 285768
reactant: 285756
name: 2-oxoglutarate dehydrogenase E1 component
notes: GPR_ASSOCIATION: RSP_0965 GENE_LIST: RSP_0965; SUBSYSTEM: Succinate metabolism Equation: 2-Oxoadipate + Enzyme N6-(lipoyl)lysine + 2 H+ <=> [Dihydrolipoyllysine-residue succinyltransferase] S-glutaryldihydrolipoyllysine + CO2 Confidence Level: 2
fast: false
reversible: false
product: 285780
kinetic law: 285804
reactant: 285744
product: 285792

285768
type: SpeciesReference
stoichiometry: 2.0
species: 564535

285756
type: SpeciesReference
stoichiometry: 1.0
species: 565876

565876
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: EnzymeN6-(lipoyl)lysine

285780
type: SpeciesReference
stoichiometry: 1.0
species: 566484

566484
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residuesuccinyltransferase]

572299
type: LocalParameter
value: 0.0

572298
type: LocalParameter
value: 0.0

572296
type: LocalParameter
value: 1000.0

572295
type: LocalParameter
value: 0.0

285744
type: SpeciesReference
stoichiometry: 1.0
species: 566482

566482
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Oxoadipate

285792
type: SpeciesReference
stoichiometry: 1.0
species: 564375

568330
type: Reaction
kinetic law: 316831
name: 5'-Deoxyadenosine via proton symport
reversible: true
product: 316819
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 5'-Deoxyadenosine[p] + H+[p] <=> 5'-5'-Deoxyadenosine + H+ Confidence Level: 1
reactant: 316783
fast: false
product: 316807
reactant: 316795

575116
type: LocalParameter
value: 0.0

575115
type: LocalParameter
value: 0.0

575113
type: LocalParameter
value: 1000.0

575112
type: LocalParameter
value: -1000.0

316819
type: SpeciesReference
stoichiometry: 1.0
species: 564535

316783
type: SpeciesReference
stoichiometry: 1.0
species: 566844

566844
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 5'-Deoxyadenosine[p]

316807
type: SpeciesReference
stoichiometry: 1.0
species: 565784

316795
type: SpeciesReference
stoichiometry: 1.0
species: 566248

568278
type: Reaction
kinetic law: 312831
product: 312819
reactant: 312807
notes: GPR_ASSOCIATION: RSP_1852 GENE_LIST: RSP_1852; SUBSYSTEM: Folate biosynthesis Equation: 2,5-Diaminopyrimidine nucleoside triphosphate <=> 2,5-Diamino-6-(5'-triphosphoryl-3',4'-trihydroxy-2'-oxopentyl)-amino-4-oxopyrimidine Confidence Level: 1
fast: false
reversible: true
name: putative GTP cyclohydrolase

574819
type: LocalParameter
value: 0.0

574817
type: LocalParameter
value: 0.0

574816
type: LocalParameter
value: 1000.0

574814
type: LocalParameter
value: -1000.0

312819
type: SpeciesReference
stoichiometry: 1.0
species: 566787

566787
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,5-Diamino-6-(5'-triphosphoryl-3',4'-trihydroxy-2'-oxopentyl)-

312807
type: SpeciesReference
stoichiometry: 1.0
species: 566786

567471
type: Reaction
reversible: true
fast: false
reactant: 263239
product: 263251
kinetic law: 263275
notes: GPR_ASSOCIATION: RSP_1377 GENE_LIST: RSP_1377; SUBSYSTEM: Nitrogen metabolism Equation: HCO3- + H+ <=> CO2 + H2O Confidence Level: 2
product: 263263
reactant: 263227
name: carbonic anhydrase

263239
type: SpeciesReference
stoichiometry: 1.0
species: 564535

263251
type: SpeciesReference
stoichiometry: 1.0
species: 564375

570233
type: LocalParameter
value: 0.0

570231
type: LocalParameter
value: 0.0

570230
type: LocalParameter
value: 1000.0

570228
type: LocalParameter
value: -1000.0

263263
type: SpeciesReference
stoichiometry: 1.0
species: 564345

263227
type: SpeciesReference
stoichiometry: 1.0
species: 564871

564871
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: HCO3-

566071
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Sorbitol[e]

568088
type: Reaction
kinetic law: 302499
product: 302487
reactant: 302475
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Uracil[e] <=> Confidence Level:
fast: false
reversible: false
name: Uracil exchange

573780
type: LocalParameter
value: 0.0

573778
type: LocalParameter
value: 0.0

573777
type: LocalParameter
value: 1000.0

573775
type: LocalParameter
value: 0.0

302487
type: SpeciesReference
stoichiometry: 1.0
species: 566562

566562
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Uracil[e]

302475
type: SpeciesReference
stoichiometry: 1.0
species: 566561

566561
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Uracil[e]

567281
type: Reaction
kinetic law: 254366
product: 254353
reactant: 254339
notes: GPR_ASSOCIATION: RSP_0834 or RSP_4053 GENE_LIST: RSP_0834; RSP_4053; SUBSYSTEM: Fructose and mannose metabolism Equation: D-Mannose 6-phosphate <=> D-Fructose 6-phosphate Confidence Level: 2
fast: false
reversible: true
name: D-mannose-6-phosphate aldose-ketose-isomerase

569591
type: LocalParameter
value: 0.0

569590
type: LocalParameter
value: 0.0

569589
type: LocalParameter
value: 1000.0

569588
type: LocalParameter
value: -1000.0

254353
type: SpeciesReference
stoichiometry: 1.0
species: 564547

564547
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Fructose6-phosphate

254339
type: SpeciesReference
stoichiometry: 1.0
species: 564859

564859
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Mannose6-phosphate

567371
type: Reaction
kinetic law: 258323
product: 258311
reactant: 258299
notes: GPR_ASSOCIATION: RSP_2736 GENE_LIST: RSP_2736; SUBSYSTEM: Glycolysis / Gluconeogenesis Equation: D-Glucose 6-phosphate <=> D-Fructose 6-phosphate Confidence Level: 2
fast: false
reversible: true
name: glucose-6-phosphate isomerase

569879
type: LocalParameter
value: 0.0

569878
type: LocalParameter
value: 0.0

569877
type: LocalParameter
value: 1000.0

569875
type: LocalParameter
value: -1000.0

258311
type: SpeciesReference
stoichiometry: 1.0
species: 564547

258299
type: SpeciesReference
stoichiometry: 1.0
species: 564562

567763
type: Reaction
reactant: 281880
product: 281905
notes: GPR_ASSOCIATION: RSP_3591 GENE_LIST: RSP_3591; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + CMP <=> ADP + CDP Confidence Level: 2
fast: false
reversible: false
product: 281917
kinetic law: 281929
name: cytidylate kinase
reactant: 281893

281880
type: SpeciesReference
stoichiometry: 1.0
species: 564348

281905
type: SpeciesReference
stoichiometry: 1.0
species: 564366

281917
type: SpeciesReference
stoichiometry: 1.0
species: 564607

564607
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CDP

571630
type: LocalParameter
value: 0.0

571629
type: LocalParameter
value: 0.0

571627
type: LocalParameter
value: 1000.0

571626
type: LocalParameter
value: 0.0

281893
type: SpeciesReference
stoichiometry: 1.0
species: 564481

566618
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hypoxanthine[e]

567573
type: Reaction
kinetic law: 269011
product: 268999
product: 268987
reactant: 268975
notes: GPR_ASSOCIATION: RSP_0382 or RSP_1257 GENE_LIST: RSP_0382; RSP_1257; SUBSYSTEM: PHB Synthesis Equation: n (R)-3-Hydroxybutanoyl-CoA <=> Poly-beta-hydroxybutyrate + n CoA Confidence Level: 3
fast: false
reversible: true
name: poly-beta-hydroxybutyrate polymerase

570646
type: LocalParameter
value: 0.0

570644
type: LocalParameter
value: 0.0

570643
type: LocalParameter
value: 1000.0

570642
type: LocalParameter
value: -1000.0

268999
type: SpeciesReference
stoichiometry: 1.0
species: 564372

268987
type: SpeciesReference
stoichiometry: 1.0
species: 565897

565897
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Poly-beta-hydroxybutyrate

268975
type: SpeciesReference
stoichiometry: 1.0
species: 565895

565895
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-3-Hydroxybutanoyl-CoA

568108
type: Reaction
fast: false
reactant: 303332
kinetic law: 303368
reactant: 303320
product: 303344
reversible: true
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Gluconate[p] + H+[p] <=> Gluconate + H+ Confidence Level: 1
product: 303356
name: Gluconate via proton symport

303332
type: SpeciesReference
stoichiometry: 1.0
species: 566248

573890
type: LocalParameter
value: 0.0

573888
type: LocalParameter
value: 0.0

573887
type: LocalParameter
value: 1000.0

573885
type: LocalParameter
value: -1000.0

303320
type: SpeciesReference
stoichiometry: 1.0
species: 566588

566588
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Gluconicacid[p]

303344
type: SpeciesReference
stoichiometry: 1.0
species: 564841

303356
type: SpeciesReference
stoichiometry: 1.0
species: 564535

566135
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Histidine[e]

567927
type: Reaction
kinetic law: 293857
product: 293845
reactant: 293833
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Fe+2[e] <=> Fe+2[p] Confidence Level: 2
fast: false
reversible: true
name: Fe+2 transport via diffusion

572888
type: LocalParameter
value: 0.0

572886
type: LocalParameter
value: 0.0

572885
type: LocalParameter
value: 1000.0

572883
type: LocalParameter
value: -1000.0

293845
type: SpeciesReference
stoichiometry: 1.0
species: 566196

293833
type: SpeciesReference
stoichiometry: 1.0
species: 566198

566198
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Fe2[e]

567677
type: Reaction
product: 276363
reactant: 276290
product: 276339
reactant: 276315
fast: false
notes: GPR_ASSOCIATION: RSP_1570 GENE_LIST: RSP_1570; SUBSYSTEM: Purine metabolism Equation: ATP + Aminoimidazole ribotide + HCO3- <=> ADP + Orthophosphate + 5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole + H+ Confidence Level: 2
product: 276327
reversible: false
name: phosphoribosylaminoimidazole carboxylase
product: 276351
reactant: 276303
kinetic law: 276376

276363
type: SpeciesReference
stoichiometry: 1.0
species: 564535

276290
type: SpeciesReference
stoichiometry: 1.0
species: 564348

276339
type: SpeciesReference
stoichiometry: 1.0
species: 564369

276315
type: SpeciesReference
stoichiometry: 1.0
species: 564871

276327
type: SpeciesReference
stoichiometry: 1.0
species: 564366

276351
type: SpeciesReference
stoichiometry: 1.0
species: 566224

566224
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole

276303
type: SpeciesReference
stoichiometry: 1.0
species: 565553

565553
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Aminoimidazoleribotide

571186
type: LocalParameter
value: 0.0

571184
type: LocalParameter
value: 0.0

571183
type: LocalParameter
value: 1000.0

571182
type: LocalParameter
value: 0.0

566899
type: Reaction
reactant: 237325
product: 237373
notes: GPR_ASSOCIATION: RSP_1455 or RSP_0184 GENE_LIST: RSP_1455; RSP_0184; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: 3-Ureidopropionate + H2O + 2 H+ <=> beta-Alanine + CO2 + NH3 Confidence Level: 2
product: 237361
fast: false
name: allantoate amidohydrolase
product: 237349
reversible: false
reactant: 237337
reactant: 237313
kinetic law: 237385

237325
type: SpeciesReference
stoichiometry: 1.0
species: 564345

237373
type: SpeciesReference
stoichiometry: 1.0
species: 564381

237361
type: SpeciesReference
stoichiometry: 1.0
species: 564375

237349
type: SpeciesReference
stoichiometry: 1.0
species: 564580

237337
type: SpeciesReference
stoichiometry: 2.0
species: 564535

237313
type: SpeciesReference
stoichiometry: 1.0
species: 565475

565475
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Ureidopropionate

568459
type: LocalParameter
value: 0.0

568458
type: LocalParameter
value: 0.0

568457
type: LocalParameter
value: 1000.0

568456
type: LocalParameter
value: 0.0

566726
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Deoxyribose[p]

566862
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Gln)

567644
type: Reaction
notes: GPR_ASSOCIATION: RSP_0294 GENE_LIST: RSP_0294; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 13(1)-Oxo-magnesium-protoporphyrin IX 13-monomethyl ester + NADPH + Oxygen <=> Divinylprotochlorophyllide + NADP+ + 2 H2O Confidence Level: 2
product: 273973
name: magnesium-protoporphyrin IX monomethyl ester cyclase
reactant: 273912
kinetic law: 273985
reversible: false
reactant: 273924
fast: false
reactant: 273936
product: 273961
product: 273948

273973
type: SpeciesReference
stoichiometry: 2.0
species: 564345

273912
type: SpeciesReference
stoichiometry: 1.0
species: 565987

565987
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 13(1)-Oxo-magnesium-protoporphyrinIX13-monomethylester

571016
type: LocalParameter
value: 0.0

571014
type: LocalParameter
value: 0.0

571013
type: LocalParameter
value: 1000.0

571012
type: LocalParameter
value: 0.0

273924
type: SpeciesReference
stoichiometry: 1.0
species: 564357

273936
type: SpeciesReference
stoichiometry: 1.0
species: 564363

273961
type: SpeciesReference
stoichiometry: 1.0
species: 564360

273948
type: SpeciesReference
stoichiometry: 1.0
species: 565989

565421
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Lipoylprotein

566296
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2-Oxopentanoicacid[p]

567305
type: Reaction
name: phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase
notes: GPR_ASSOCIATION: RSP_0721 GENE_LIST: RSP_0721; SUBSYSTEM: Glycerophospholipid metabolism Equation: S-Adenosyl-L-methionine + Phosphatidyl-N-dimethylethanolamine <=> S-Adenosyl-L-homocysteine + Phosphatidylcholine Confidence Level: 4
reactant: 255419
fast: false
kinetic law: 255456
reactant: 255407
reversible: true
product: 255444
product: 255432

255419
type: SpeciesReference
stoichiometry: 1.0
species: 566378

569663
type: LocalParameter
value: 0.0

569662
type: LocalParameter
value: 0.0

569661
type: LocalParameter
value: 1000.0

569660
type: LocalParameter
value: -1000.0

255407
type: SpeciesReference
stoichiometry: 1.0
species: 564393

255444
type: SpeciesReference
stoichiometry: 1.0
species: 564697

255432
type: SpeciesReference
stoichiometry: 1.0
species: 564399

566160
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Methionine[p]

567115
type: Reaction
kinetic law: 247347
product: 247335
reactant: 247322
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: H2O[e] <=> Confidence Level:
fast: false
reversible: false
name: H2O exchange

569116
type: LocalParameter
value: 0.0

569115
type: LocalParameter
value: 0.0

569114
type: LocalParameter
value: 1000.0

569113
type: LocalParameter
value: 0.0

247335
type: SpeciesReference
stoichiometry: 1.0
species: 566247

566247
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: H2O[e]

247322
type: SpeciesReference
stoichiometry: 1.0
species: 566246

566246
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: H2O[e]

568166
type: Reaction
kinetic law: 305977
product: 305965
reactant: 305953
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Propanoate[e] <=> Confidence Level:
fast: false
reversible: false
name: Propanoate exchange

574203
type: LocalParameter
value: 0.0

574202
type: LocalParameter
value: 0.0

574200
type: LocalParameter
value: 1000.0

574199
type: LocalParameter
value: 0.0

305965
type: SpeciesReference
stoichiometry: 1.0
species: 566666

566666
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Propanoate[e]

305953
type: SpeciesReference
stoichiometry: 1.0
species: 566665

566665
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Propanoate[e]

566464
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase]

565998
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone

567933
type: Reaction
kinetic law: 294076
product: 294063
reactant: 294051
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: thiamine[e] <=> thiamine[p] Confidence Level: 2
fast: false
reversible: true
name: thiamine transport via diffusion

572920
type: LocalParameter
value: 0.0

572919
type: LocalParameter
value: 0.0

572917
type: LocalParameter
value: 1000.0

572916
type: LocalParameter
value: -1000.0

294063
type: SpeciesReference
stoichiometry: 1.0
species: 566030

566030
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: thiamine[p]

294051
type: SpeciesReference
stoichiometry: 1.0
species: 566032

566032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: thiamine[e]

566200
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Mn2

565862
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Hydroxyisourate

566002
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Octaprenylphenol

567712
type: Reaction
product: 278505
product: 278517
reversible: false
product: 278493
fast: false
notes: GPR_ASSOCIATION: RSP_2912 GENE_LIST: RSP_2912; SUBSYSTEM: Purine metabolism Equation: GTP + H2O <=> GMP + Diphosphate + H+ Confidence Level: 2
kinetic law: 278529
reactant: 278469
reactant: 278481
name: nucleoside triphosphate pyrophosphohydrolase

278505
type: SpeciesReference
stoichiometry: 1.0
species: 564378

278517
type: SpeciesReference
stoichiometry: 1.0
species: 564535

278493
type: SpeciesReference
stoichiometry: 1.0
species: 564676

564676
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: GMP

571375
type: LocalParameter
value: 0.0

571374
type: LocalParameter
value: 0.0

571372
type: LocalParameter
value: 1000.0

571371
type: LocalParameter
value: 0.0

278469
type: SpeciesReference
stoichiometry: 1.0
species: 564454

278481
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567650
type: Reaction
product: 274505
notes: GPR_ASSOCIATION: RSP_2191 and RSP_2189 GENE_LIST: RSP_2191; RSP_2189; SUBSYSTEM: Propanoate metabolism Equation: ATP + Propanoyl-CoA + HCO3- <=> ADP + Orthophosphate + (S)-Methylmalonyl-CoA + H+ Confidence Level: 3
reactant: 274468
reactant: 274492
reversible: false
name: propionyl-CoA carboxylase
fast: false
reactant: 274480
kinetic law: 274553
product: 274541
product: 274517
product: 274529

274505
type: SpeciesReference
stoichiometry: 1.0
species: 564366

274468
type: SpeciesReference
stoichiometry: 1.0
species: 564348

274492
type: SpeciesReference
stoichiometry: 1.0
species: 564871

274480
type: SpeciesReference
stoichiometry: 1.0
species: 564583

571047
type: LocalParameter
value: 0.0

571046
type: LocalParameter
value: 0.0

571045
type: LocalParameter
value: 1000.0

571043
type: LocalParameter
value: 0.0

274541
type: SpeciesReference
stoichiometry: 1.0
species: 564535

274517
type: SpeciesReference
stoichiometry: 1.0
species: 564369

274529
type: SpeciesReference
stoichiometry: 1.0
species: 565114

565114
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2S)-Methylmalonyl-CoA

567358
type: Reaction
product: 257646
reactant: 257610
reactant: 257597
reactant: 257622
product: 257658
reversible: true
name: dimethylglycine dehydrogenase
fast: false
kinetic law: 257670
notes: GPR_ASSOCIATION: RSP_3566 GENE_LIST: RSP_3566; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: N,N-Dimethylglycine + FAD + H2O <=> Sarcosine + Formaldehyde + FADH2 Confidence Level: 2
product: 257634

257646
type: SpeciesReference
stoichiometry: 1.0
species: 564508

564508
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Formaldehyde

257610
type: SpeciesReference
stoichiometry: 1.0
species: 564387

257597
type: SpeciesReference
stoichiometry: 1.0
species: 565919

565919
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N,N-Dimethylglycine

257622
type: SpeciesReference
stoichiometry: 1.0
species: 564345

257658
type: SpeciesReference
stoichiometry: 1.0
species: 565352

569831
type: LocalParameter
value: 0.0

569829
type: LocalParameter
value: 0.0

569828
type: LocalParameter
value: 1000.0

569819
type: LocalParameter
value: -1000.0

257634
type: SpeciesReference
stoichiometry: 1.0
species: 564778

564778
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sarcosine

567363
type: Reaction
reversible: true
name: (R)-1-Aminopropan-2-ol:NAD+ oxidoreductase
reactant: 257876
kinetic law: 257926
product: 257902
product: 257914
fast: false
reactant: 257889
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Glycine, serine and threonine metabolism Equation: (R)-1-Aminopropan-2-ol + NAD+ <=> Aminoacetone + NADH Confidence Level: 1

257876
type: SpeciesReference
stoichiometry: 1.0
species: 566494

566494
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-1-Aminopropan-2-ol

569850
type: LocalParameter
value: 0.0

569849
type: LocalParameter
value: 0.0

569848
type: LocalParameter
value: 1000.0

569846
type: LocalParameter
value: -1000.0

257902
type: SpeciesReference
stoichiometry: 1.0
species: 566496

566496
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Aminoacetone

257914
type: SpeciesReference
stoichiometry: 1.0
species: 564354

257889
type: SpeciesReference
stoichiometry: 1.0
species: 564351

566987
type: Reaction
product: 242250
notes: GPR_ASSOCIATION: RSP_1284 or RSP_3267 GENE_LIST: RSP_1284; RSP_3267; SUBSYSTEM: Carbon fixation in photosynthetic organisms Equation: ATP + D-Ribulose 5-phosphate <=> ADP + D-Ribulose 1,5-bisphosphate Confidence Level: 4
name: phosphoribulokinase
reactant: 242238
product: 242274
reversible: true
reactant: 242226
fast: false
kinetic law: 242286
product: 242262

242250
type: SpeciesReference
stoichiometry: 1.0
species: 564366

242238
type: SpeciesReference
stoichiometry: 1.0
species: 564763

242274
type: SpeciesReference
stoichiometry: 1.0
species: 564535

242226
type: SpeciesReference
stoichiometry: 1.0
species: 564348

568732
type: LocalParameter
value: 0.0

568731
type: LocalParameter
value: 0.0

568730
type: LocalParameter
value: 1000.0

568729
type: LocalParameter
value: -1000.0

242262
type: SpeciesReference
stoichiometry: 1.0
species: 565304

565304
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribulose1,5-bisphosphate

567083
type: Reaction
kinetic law: 246478
product: 246466
reactant: 246454
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Fe+2[e] <=> Confidence Level:
fast: false
reversible: false
name: Fe+2 exchange

569019
type: LocalParameter
value: 0.0

569018
type: LocalParameter
value: 0.0

569017
type: LocalParameter
value: 1000.0

569016
type: LocalParameter
value: 0.0

246466
type: SpeciesReference
stoichiometry: 1.0
species: 566199

566199
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Fe2[e]

246454
type: SpeciesReference
stoichiometry: 1.0
species: 566198

568047
type: Reaction
reversible: false
fast: false
product: 300424
notes: GPR_ASSOCIATION: RSP_1851 GENE_LIST: RSP_1851; SUBSYSTEM: Cysteine and methionine metabolism Equation: L-Methionine + H2O <=> Methanethiol + 2-Oxobutanoate + NH3 Confidence Level: 2
product: 300411
reactant: 300387
product: 300436
reactant: 300399
name: O-succinylhomoserine sulfhydrylase
kinetic law: 300448

300424
type: SpeciesReference
stoichiometry: 1.0
species: 564601

564601
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Oxobutanoate

300411
type: SpeciesReference
stoichiometry: 1.0
species: 564973

300387
type: SpeciesReference
stoichiometry: 1.0
species: 564517

300436
type: SpeciesReference
stoichiometry: 1.0
species: 564381

300399
type: SpeciesReference
stoichiometry: 1.0
species: 564345

573555
type: LocalParameter
value: 0.0

573553
type: LocalParameter
value: 0.0

573552
type: LocalParameter
value: 1000.0

573550
type: LocalParameter
value: 0.0

567173
type: Reaction
reactant: 249506
name: Acyl-CoA dehydrogenase
reactant: 249518
kinetic law: 249567
reversible: true
fast: false
reactant: 249494
notes: GPR_ASSOCIATION: RSP_1295 GENE_LIST: RSP_1295; SUBSYSTEM: Fatty acid biosynthesis Equation: Glutaryl-CoA + H+ + FAD <=> FADH2 + Crotonoyl-CoA + CO2 Confidence Level: 2
product: 249531
product: 249543
product: 249555

249506
type: SpeciesReference
stoichiometry: 1.0
species: 564535

249518
type: SpeciesReference
stoichiometry: 1.0
species: 564387

569284
type: LocalParameter
value: 0.0

569283
type: LocalParameter
value: 0.0

569282
type: LocalParameter
value: 1000.0

569281
type: LocalParameter
value: -1000.0

249494
type: SpeciesReference
stoichiometry: 1.0
species: 566374

566374
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glutaryl-CoA

249531
type: SpeciesReference
stoichiometry: 1.0
species: 566375

566375
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Crotonoyl-CoA

249543
type: SpeciesReference
stoichiometry: 1.0
species: 565352

249555
type: SpeciesReference
stoichiometry: 1.0
species: 564375

568137
type: Reaction
kinetic law: 304646
product: 304632
reactant: 304619
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 5,6-Dihydrouracil[e] <=> Confidence Level:
fast: false
reversible: false
name: 5,6-Dihydrouracil exchange

574044
type: LocalParameter
value: 0.0

574042
type: LocalParameter
value: 0.0

574041
type: LocalParameter
value: 1000.0

574039
type: LocalParameter
value: 0.0

304632
type: SpeciesReference
stoichiometry: 1.0
species: 566626

566626
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5,6-Dihydrouracil[e]

304619
type: SpeciesReference
stoichiometry: 1.0
species: 566625

566625
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5,6-Dihydrouracil[e]

566886
type: Reaction
reactant: 236583
name: aspartate aminotransferase
product: 236607
fast: false
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Cysteine + 2-Oxoglutarate <=> Mercaptopyruvate + L-Glutamate Confidence Level: 2
product: 236595
reactant: 236571
reversible: true
kinetic law: 236619

236583
type: SpeciesReference
stoichiometry: 1.0
species: 564411

236607
type: SpeciesReference
stoichiometry: 1.0
species: 564408

236595
type: SpeciesReference
stoichiometry: 1.0
species: 566214

566214
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Mercaptopyruvate

236571
type: SpeciesReference
stoichiometry: 1.0
species: 564577

568419
type: LocalParameter
value: 0.0

568418
type: LocalParameter
value: 0.0

568417
type: LocalParameter
value: 1000.0

568416
type: LocalParameter
value: -1000.0

565514
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Phospho-L-aspartate

567564
type: Reaction
product: 268336
notes: GPR_ASSOCIATION: RSP_2100 GENE_LIST: RSP_2100; SUBSYSTEM: Peptidoglycan biosynthesis Equation: ATP + UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysine + D-Alanyl-D-alanine <=> ADP + Orthophosphate + UDPMurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala) Confidence Level: 2
reactant: 268264
fast: false
reactant: 268288
kinetic law: 268348
name: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
reversible: true
product: 268300
reactant: 268276
product: 268324
product: 268312

268336
type: SpeciesReference
stoichiometry: 1.0
species: 564535

268264
type: SpeciesReference
stoichiometry: 1.0
species: 564348

268288
type: SpeciesReference
stoichiometry: 1.0
species: 565238

565238
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Alanyl-D-alanine

570600
type: LocalParameter
value: 0.0

570598
type: LocalParameter
value: 0.0

570597
type: LocalParameter
value: 1000.0

570596
type: LocalParameter
value: -1000.0

268300
type: SpeciesReference
stoichiometry: 1.0
species: 564366

268276
type: SpeciesReference
stoichiometry: 1.0
species: 565808

565808
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysine

268324
type: SpeciesReference
stoichiometry: 1.0
species: 565736

565736
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDPMurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala)

268312
type: SpeciesReference
stoichiometry: 1.0
species: 564369

567904
type: Reaction
product: 292855
reactant: 292831
reversible: true
notes: GPR_ASSOCIATION: RSP_3330 or RSP_0656 GENE_LIST: RSP_3330; RSP_0656; SUBSYSTEM: Transport, inner membrane Equation: Sulfate[p] + Sodium[p] <=> Sulfate + Sodium Confidence Level: 2
reactant: 292843
name: Sodium/Sulfate symporter
fast: false
product: 292867
kinetic law: 292879

292855
type: SpeciesReference
stoichiometry: 1.0
species: 564487

564487
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sulfate

292831
type: SpeciesReference
stoichiometry: 1.0
species: 566021

566021
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: sulfate[p]

292843
type: SpeciesReference
stoichiometry: 1.0
species: 566255

566255
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Sodium[p]

292867
type: SpeciesReference
stoichiometry: 1.0
species: 566254

566254
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sodium

572762
type: LocalParameter
value: 0.0

572760
type: LocalParameter
value: 0.0

572759
type: LocalParameter
value: 1000.0

572757
type: LocalParameter
value: -1000.0

567623
type: Reaction
notes: GPR_ASSOCIATION: RSP_2831 GENE_LIST: RSP_2831; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: ATP + Cobinamide + H+ <=> Triphosphate + Adenosyl cobinamide Confidence Level: 2
product: 272374
product: 272386
fast: false
reactant: 272338
reversible: true
name: cob(I)yrinic acid a,c-diamide adenosyltransferase
reactant: 272362
reactant: 272350
kinetic law: 272398

272374
type: SpeciesReference
stoichiometry: 1.0
species: 565045

272386
type: SpeciesReference
stoichiometry: 1.0
species: 565844

565844
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Adenosylcobinamide

272338
type: SpeciesReference
stoichiometry: 1.0
species: 564348

272362
type: SpeciesReference
stoichiometry: 1.0
species: 564535

272350
type: SpeciesReference
stoichiometry: 1.0
species: 565193

565193
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cobinamide

570904
type: LocalParameter
value: 0.0

570902
type: LocalParameter
value: 0.0

570901
type: LocalParameter
value: 1000.0

570900
type: LocalParameter
value: -1000.0

567893
type: Reaction
product: 291935
name: ABC cobalamin (Cobamide coenzyme) transporter
reactant: 291899
reversible: false
product: 291971
fast: false
reactant: 291923
reactant: 291911
notes: GPR_ASSOCIATION: (RSP_3413 and RSP_3414 and RSP_3415 and RSP_3416) or (RSP_3392 and RSP_3391 and RSP_3390) or (RSP_2403 and RSP_2404 and RSP_2405) or (RSP_1439 and RSP_1437 and RSP_1438) or (RSP_3079 and RSP_3220 and RSP_3222 and RSP_3221) GENE_LIST: RSP_3413; RSP_3414; RSP_3415; RSP_3416; RSP_3392; RSP_3391; RSP_3390; RSP_2403; RSP_2404; RSP_2405; RSP_1439; RSP_1437; RSP_1438; RSP_3079; RSP_3220; RSP_3222; RSP_3221; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + cobalamin[p] <=> ADP + H+ + Orthophosphate + cobalamin Confidence Level: 2
product: 291947
kinetic law: 291983
product: 291959

291935
type: SpeciesReference
stoichiometry: 1.0
species: 564366

291899
type: SpeciesReference
stoichiometry: 1.0
species: 564348

291971
type: SpeciesReference
stoichiometry: 1.0
species: 564754

564754
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cobamidecoenzyme

291923
type: SpeciesReference
stoichiometry: 1.0
species: 566182

566182
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cobamidecoenzyme[p]

291911
type: SpeciesReference
stoichiometry: 1.0
species: 564345

291947
type: SpeciesReference
stoichiometry: 1.0
species: 564535

572701
type: LocalParameter
value: 0.0

572700
type: LocalParameter
value: 0.0

572698
type: LocalParameter
value: 1000.0

572697
type: LocalParameter
value: 0.0

291959
type: SpeciesReference
stoichiometry: 1.0
species: 564369

566538
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glyoxylate[e]

568321
type: Reaction
kinetic law: 315407
product: 315395
reactant: 315383
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Aminoacetaldehyde[e] <=> Confidence Level:
fast: false
reversible: false
name: Aminoacetaldehyde exchange

575067
type: LocalParameter
value: 0.0

575065
type: LocalParameter
value: 0.0

575064
type: LocalParameter
value: 1000.0

575062
type: LocalParameter
value: 0.0

315395
type: SpeciesReference
stoichiometry: 1.0
species: 566839

566839
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Aminoacetaldehyde[e]

315383
type: SpeciesReference
stoichiometry: 1.0
species: 566838

566838
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Aminoacetaldehyde[e]

565448
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycyl-tRNA(Gly)

568238
type: Reaction
product: 309608
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Cysteine and methionine metabolism Equation: Betaine + L-Homocysteine <=> N,N-Dimethylglycine + L-Methionine Confidence Level: 1
kinetic law: 309632
fast: false
reactant: 309584
reversible: false
product: 309620
reactant: 309596

309608
type: SpeciesReference
stoichiometry: 1.0
species: 565919

574599
type: LocalParameter
value: 0.0

574597
type: LocalParameter
value: 0.0

574596
type: LocalParameter
value: 1000.0

574594
type: LocalParameter
value: 0.0

309584
type: SpeciesReference
stoichiometry: 1.0
species: 565132

565132
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Betaine

309620
type: SpeciesReference
stoichiometry: 1.0
species: 564517

309596
type: SpeciesReference
stoichiometry: 1.0
species: 564694

564694
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Homocysteine

568328
type: Reaction
kinetic law: 315743
product: 315731
reactant: 315719
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Dethiobiotin[e] <=> Dethiobiotin[p] Confidence Level: 2
fast: false
reversible: true
name: Dethiobiotin transport via diffusion

575105
type: LocalParameter
value: 0.0

575104
type: LocalParameter
value: 0.0

575102
type: LocalParameter
value: 1000.0

575101
type: LocalParameter
value: -1000.0

315731
type: SpeciesReference
stoichiometry: 1.0
species: 566812

566812
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Dethiobiotin[p]

315719
type: SpeciesReference
stoichiometry: 1.0
species: 566814

566814
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dethiobiotin[e]

566355
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Lauroyl-CoA

568053
type: Reaction
kinetic law: 300808
product: 300796
reactant: 300784
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Glucose[e] <=> Glucose[p] Confidence Level: 2
fast: false
reversible: true
name: Glucose transport via diffusion

573588
type: LocalParameter
value: 0.0

573586
type: LocalParameter
value: 0.0

573585
type: LocalParameter
value: 1000.0

573583
type: LocalParameter
value: -1000.0

300796
type: SpeciesReference
stoichiometry: 1.0
species: 566512

566512
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Glucose[p]

300784
type: SpeciesReference
stoichiometry: 1.0
species: 566513

566513
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Glucose[e]

566735
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hippurate[e]

567331
type: Reaction
reactant: 256278
notes: GPR_ASSOCIATION: RSP_0565 GENE_LIST: RSP_0565; SUBSYSTEM: Glycerophospholipid metabolism Equation: CDP-diacylglycerol + Choline <=> CMP + Phosphatidylcholine + H+ Confidence Level: 2
kinetic law: 256326
product: 256314
product: 256290
reversible: true
product: 256302
reactant: 256266
fast: false
name: CDP-diacylglycerol-choline O-phosphatidyltransferase

256278
type: SpeciesReference
stoichiometry: 1.0
species: 564610

569718
type: LocalParameter
value: 0.0

569717
type: LocalParameter
value: 0.0

569716
type: LocalParameter
value: 1000.0

569715
type: LocalParameter
value: -1000.0

256314
type: SpeciesReference
stoichiometry: 1.0
species: 564535

256290
type: SpeciesReference
stoichiometry: 1.0
species: 564481

256302
type: SpeciesReference
stoichiometry: 1.0
species: 564697

256266
type: SpeciesReference
stoichiometry: 1.0
species: 564856

567107
type: Reaction
kinetic law: 247128
product: 247116
reactant: 247104
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: xylose[e] <=> Confidence Level:
fast: false
reversible: false
name: xylose exchange

569092
type: LocalParameter
value: 0.0

569091
type: LocalParameter
value: 0.0

569090
type: LocalParameter
value: 1000.0

569089
type: LocalParameter
value: 0.0

247116
type: SpeciesReference
stoichiometry: 1.0
species: 566098

566098
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Xylose[e]

247104
type: SpeciesReference
stoichiometry: 1.0
species: 566096

566096
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Xylose[e]

567864
type: Reaction
product: 289224
product: 289236
kinetic law: 289248
fast: false
reactant: 289200
reactant: 289212
name: (S)-Malate transport via Na+ symport
notes: GPR_ASSOCIATION: RSP_0910 and RSP_0911 and RSP_0912 GENE_LIST: RSP_0910; RSP_0911; RSP_0912; SUBSYSTEM: Transport, inner membrane Equation: Malate[p] + 2 Sodium[p] <=> Malate + 2 Sodium Confidence Level: 3
reversible: true

289224
type: SpeciesReference
stoichiometry: 1.0
species: 564685

564685
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Malate

289236
type: SpeciesReference
stoichiometry: 2.0
species: 566254

572541
type: LocalParameter
value: 0.0

572539
type: LocalParameter
value: 0.0

572538
type: LocalParameter
value: 1000.0

572536
type: LocalParameter
value: -1000.0

289200
type: SpeciesReference
stoichiometry: 1.0
species: 566279

566279
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (S)-Malate[p]

289212
type: SpeciesReference
stoichiometry: 2.0
species: 566255

567435
type: Reaction
reactant: 261430
reactant: 261442
fast: false
product: 261466
name: dihydrodipicolinate synthase
reversible: false
product: 261454
notes: GPR_ASSOCIATION: RSP_0882 or RSP_4002 or RSP_3456 or RSP_3408 GENE_LIST: RSP_0882; RSP_4002; RSP_3456; RSP_3408; SUBSYSTEM: Lysine biosynthesis Equation: L-Aspartate 4-semialdehyde + Pyruvate <=> L-2,3-Dihydrodipicolinate + H+ Confidence Level: 2
product: 261478
kinetic law: 261490

261430
type: SpeciesReference
stoichiometry: 1.0
species: 565003

565003
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Aspartate4-semialdehyde

261442
type: SpeciesReference
stoichiometry: 1.0
species: 564402

261466
type: SpeciesReference
stoichiometry: 2.0
species: 564345

261454
type: SpeciesReference
stoichiometry: 1.0
species: 565550

565550
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-2,3-Dihydrodipicolinate

261478
type: SpeciesReference
stoichiometry: 1.0
species: 564535

570107
type: LocalParameter
value: 0.0

570106
type: LocalParameter
value: 0.0

570105
type: LocalParameter
value: 1000.0

570103
type: LocalParameter
value: 0.0

567160
type: Reaction
reactant: 248904
name: Acyl-CoA dehydrogenase
reversible: true
notes: GPR_ASSOCIATION: RSP_0156 or RSP_1679 GENE_LIST: RSP_0156; RSP_1679; SUBSYSTEM: Fatty acid biosynthesis Equation: Hexanoyl-CoA + FAD <=> trans-Hex-2-enoyl-CoA + FADH2 Confidence Level: 2
product: 248928
fast: false
kinetic law: 248940
reactant: 248892
product: 248916

248904
type: SpeciesReference
stoichiometry: 1.0
species: 564387

248928
type: SpeciesReference
stoichiometry: 1.0
species: 565352

569244
type: LocalParameter
value: 0.0

569243
type: LocalParameter
value: 0.0

569242
type: LocalParameter
value: 1000.0

569241
type: LocalParameter
value: -1000.0

248892
type: SpeciesReference
stoichiometry: 1.0
species: 566347

566347
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hexanoyl-CoA

248916
type: SpeciesReference
stoichiometry: 1.0
species: 566348

566348
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Hex-2-enoyl-CoA

567245
type: Reaction
fast: false
name: 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
product: 252628
reversible: true
product: 252640
reactant: 252603
product: 252615
notes: GPR_ASSOCIATION: RSP_3535 or RSP_2196 GENE_LIST: RSP_3535; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: (S)-3-Hydroxydodecanoyl-CoA + NAD+ <=> 3-Oxododecanoyl-CoA + NADH + H+ Confidence Level: 2
reactant: 252591
kinetic law: 252652

252628
type: SpeciesReference
stoichiometry: 1.0
species: 564354

252640
type: SpeciesReference
stoichiometry: 1.0
species: 564535

252603
type: SpeciesReference
stoichiometry: 1.0
species: 564351

252615
type: SpeciesReference
stoichiometry: 1.0
species: 565742

252591
type: SpeciesReference
stoichiometry: 1.0
species: 565652

565652
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxydodecanoyl-CoA

569490
type: LocalParameter
value: 0.0

569489
type: LocalParameter
value: 0.0

569488
type: LocalParameter
value: 1000.0

569487
type: LocalParameter
value: -1000.0

567250
type: Reaction
fast: false
notes: GPR_ASSOCIATION: RSP_3535 or RSP_2196 GENE_LIST: RSP_3535; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: (S)-Hydroxyhexanoyl-CoA + NAD+ <=> 3-Oxohexanoyl-CoA + NADH + H+ Confidence Level: 2
product: 252846
reactant: 252821
kinetic law: 252870
product: 252858
name: 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
product: 252834
reactant: 252809
reversible: true

252846
type: SpeciesReference
stoichiometry: 1.0
species: 564354

252821
type: SpeciesReference
stoichiometry: 1.0
species: 564351

569502
type: LocalParameter
value: 0.0

569501
type: LocalParameter
value: 0.0

569500
type: LocalParameter
value: 1000.0

569499
type: LocalParameter
value: -1000.0

252858
type: SpeciesReference
stoichiometry: 1.0
species: 564535

252834
type: SpeciesReference
stoichiometry: 1.0
species: 565786

565786
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxohexanoyl-CoA

252809
type: SpeciesReference
stoichiometry: 1.0
species: 565565

565565
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Hydroxyhexanoyl-CoA

566256
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sodium[e]

565523
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Cysteinyl-tRNA(Cys)

567780
type: Reaction
notes: GPR_ASSOCIATION: RSP_1680 GENE_LIST: RSP_1680; SUBSYSTEM: Pyruvate metabolism Equation: ATP + Oxaloacetate <=> ADP + Phosphoenolpyruvate + CO2 Confidence Level: 3
product: 283064
fast: false
reactant: 283028
product: 283040
reversible: false
name: phosphoenolpyruvate carboxykinase
product: 283052
reactant: 283016
kinetic law: 283076

283064
type: SpeciesReference
stoichiometry: 1.0
species: 564375

283028
type: SpeciesReference
stoichiometry: 1.0
species: 564433

564433
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Oxaloacetate

283040
type: SpeciesReference
stoichiometry: 1.0
species: 564366

283052
type: SpeciesReference
stoichiometry: 1.0
species: 564520

283016
type: SpeciesReference
stoichiometry: 1.0
species: 564348

571715
type: LocalParameter
value: 0.0

571714
type: LocalParameter
value: 0.0

571712
type: LocalParameter
value: 1000.0

571711
type: LocalParameter
value: 0.0

568260
type: Reaction
kinetic law: 311887
product: 311874
product: 311862
reactant: 311850
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Gluconic acid <=> 2-Dehydro-3-deoxy-D-gluconate + H2O Confidence Level: 1
fast: false
reversible: false

574720
type: LocalParameter
value: 0.0

574718
type: LocalParameter
value: 0.0

574717
type: LocalParameter
value: 1000.0

574715
type: LocalParameter
value: 0.0

311874
type: SpeciesReference
stoichiometry: 1.0
species: 564345

311862
type: SpeciesReference
stoichiometry: 1.0
species: 564769

311850
type: SpeciesReference
stoichiometry: 1.0
species: 564841

567493
type: Reaction
product: 264638
product: 264650
reactant: 264614
reversible: true
reactant: 264602
name: putative NADH dehydrogenase I and II
reactant: 264626
product: 264662
notes: GPR_ASSOCIATION: (RSP_0100 and RSP_0101 and RSP_0102 and RSP_0103 and RSP_0104 and RSP_0105 and RSP_0106 and RSP_0107 and RSP_0108 and RSP_0109 and RSP_0110 and RSP_0111 and RSP_0112) or (RSP_2512 and RSP_2513 and RSP_2514 and RSP_2515 and RSP_2516 and RSP_2518 and RSP_2521 and RSP_2522 and RSP_2523 and RSP_2525 and RSP_2526 and RSP_2527 and RSP_2529 and RSP_2530) GENE_LIST: RSP_0100; RSP_0101; RSP_0102; RSP_0103; RSP_0104; RSP_0105; RSP_0106; RSP_0107; RSP_0108; RSP_0109; RSP_0110; RSP_0111; RSP_0112; RSP_2512; RSP_2513; RSP_2514; RSP_2515; RSP_2516; RSP_2518; RSP_2521; RSP_2522; RSP_2523; RSP_2525; RSP_2526; RSP_2527; RSP_2529; RSP_2530; SUBSYSTEM: Oxidative phosphorylation Equation: Ubiquinone + NADH + 5 H+ <=> Ubiquinol + NAD+ + 4H+[p] Confidence Level: 3
kinetic law: 264674
fast: false

264638
type: SpeciesReference
stoichiometry: 1.0
species: 564961

564961
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ubiquinol

264650
type: SpeciesReference
stoichiometry: 1.0
species: 564351

264614
type: SpeciesReference
stoichiometry: 1.0
species: 564354

264602
type: SpeciesReference
stoichiometry: 1.0
species: 564964

564964
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ubiquinone

264626
type: SpeciesReference
stoichiometry: 5.0
species: 564535

264662
type: SpeciesReference
stoichiometry: 4.0
species: 566248

570312
type: LocalParameter
value: 0.0

570311
type: LocalParameter
value: 0.0

570310
type: LocalParameter
value: 1000.0

570309
type: LocalParameter
value: -1000.0

567132
type: Reaction
kinetic law: 247757
product: 247745
reactant: 247733
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 2-Oxopentanoic acid[e] <=> Confidence Level:
fast: false
reversible: false
name: 2-Oxopentanoic acid exchange

569160
type: LocalParameter
value: 0.0

569159
type: LocalParameter
value: 0.0

569158
type: LocalParameter
value: 1000.0

569157
type: LocalParameter
value: 0.0

247745
type: SpeciesReference
stoichiometry: 1.0
species: 566299

566299
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxopentanoicacid[e]

247733
type: SpeciesReference
stoichiometry: 1.0
species: 566298

566298
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxopentanoicacid[e]

566592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Glucuronate[p]

566935
type: Reaction
product: 239427
kinetic law: 239452
product: 239440
reactant: 239379
fast: false
reactant: 239403
reversible: false
name: methionyl-tRNA synthetase
reactant: 239391
product: 239415
notes: GPR_ASSOCIATION: RSP_0425 and (RSP_4303 or RSP_4307 or RSP_4315 or RSP_4351 or RSP_4356) GENE_LIST: RSP_0425; RSP_4303; RSP_4307; RSP_4315; RSP_4351; RSP_4356; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Methionine + tRNA(Met) <=> AMP + Diphosphate + L-Methionyl-tRNA(Met) Confidence Level: 2

239427
type: SpeciesReference
stoichiometry: 1.0
species: 564378

568567
type: LocalParameter
value: 0.0

568566
type: LocalParameter
value: 0.0

568565
type: LocalParameter
value: 1000.0

568564
type: LocalParameter
value: 0.0

239440
type: SpeciesReference
stoichiometry: 1.0
species: 565451

565451
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Methionyl-tRNA

239379
type: SpeciesReference
stoichiometry: 1.0
species: 564348

239403
type: SpeciesReference
stoichiometry: 1.0
species: 565397

565397
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Met)

239391
type: SpeciesReference
stoichiometry: 1.0
species: 564517

239415
type: SpeciesReference
stoichiometry: 1.0
species: 564396

568267
type: Reaction
kinetic law: 312336
product: 312324
reactant: 312312
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Nicotinate[e] <=> Confidence Level:
fast: false
reversible: false
name: Nicotinate exchange

574758
type: LocalParameter
value: 0.0

574757
type: LocalParameter
value: 0.0

574755
type: LocalParameter
value: 1000.0

574754
type: LocalParameter
value: 0.0

312324
type: SpeciesReference
stoichiometry: 1.0
species: 566773

566773
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nicotinate[e]

312312
type: SpeciesReference
stoichiometry: 1.0
species: 566771

566771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nicotinate[e]

567523
type: Reaction
reactant: 266164
name: D-mannonate oxidoreductase
product: 266200
kinetic law: 266212
notes: GPR_ASSOCIATION: RSP_0480 GENE_LIST: RSP_0480; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Mannonate + NAD+ <=> D-Fructuronate + NADH + H+ Confidence Level: 2
product: 266188
reactant: 266151
fast: false
reversible: true
product: 266176

266164
type: SpeciesReference
stoichiometry: 1.0
species: 564351

266200
type: SpeciesReference
stoichiometry: 1.0
species: 564535

570427
type: LocalParameter
value: 0.0

570425
type: LocalParameter
value: 0.0

570424
type: LocalParameter
value: 1000.0

570423
type: LocalParameter
value: -1000.0

266188
type: SpeciesReference
stoichiometry: 1.0
species: 564354

266151
type: SpeciesReference
stoichiometry: 1.0
species: 565039

565039
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Mannonate

266176
type: SpeciesReference
stoichiometry: 1.0
species: 565217

565217
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Fructuronate

567976
type: Reaction
product: 295710
reactant: 295674
reactant: 295686
name: 4-hydroxybenzoate polyprenyltransferase
notes: GPR_ASSOCIATION: RSP_1008 GENE_LIST: RSP_1008; SUBSYSTEM: Ubiquinone and other terpenoid-quinone biosynthesis Equation: all-trans-Octaprenyl diphosphate + 4-Hydroxybenzoate <=> 3-Octaprenyl-4-hydroxybenzoate + Diphosphate Confidence Level: 2
kinetic law: 295722
product: 295698
fast: false
reversible: false

295710
type: SpeciesReference
stoichiometry: 1.0
species: 564378

295674
type: SpeciesReference
stoichiometry: 1.0
species: 565983

565983
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: all-trans-Octaprenyldiphosphate

295686
type: SpeciesReference
stoichiometry: 1.0
species: 566003

566003
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Hydroxybenzoate

573160
type: LocalParameter
value: 0.0

573158
type: LocalParameter
value: 0.0

573157
type: LocalParameter
value: 1000.0

573156
type: LocalParameter
value: 0.0

295698
type: SpeciesReference
stoichiometry: 1.0
species: 566001

566001
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Octaprenyl-4-hydroxybenzoate

567943
type: Reaction
kinetic law: 294438
product: 294425
reactant: 294413
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Mannitol[e] <=> Mannitol[p] Confidence Level: 2
fast: false
reversible: true
name: Mannitol transport via diffusion

572975
type: LocalParameter
value: 0.0

572974
type: LocalParameter
value: 0.0

572972
type: LocalParameter
value: 1000.0

572971
type: LocalParameter
value: -1000.0

294425
type: SpeciesReference
stoichiometry: 1.0
species: 566072

566072
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Mannitol[p]

294413
type: SpeciesReference
stoichiometry: 1.0
species: 566073

566073
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Mannitol[e]

566083
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: alpha,alpha-Trehalose[e]

567693
type: Reaction
product: 277324
product: 277336
name: stationary phase survival protein SurE
fast: false
notes: GPR_ASSOCIATION: RSP_2545 GENE_LIST: RSP_2545; SUBSYSTEM: Purine metabolism Equation: 3'-GMP + H2O <=> Guanosine + Orthophosphate Confidence Level: 2
reversible: false
kinetic law: 277348
reactant: 277300
reactant: 277312

277324
type: SpeciesReference
stoichiometry: 1.0
species: 566227

277336
type: SpeciesReference
stoichiometry: 1.0
species: 564369

571280
type: LocalParameter
value: 0.0

571279
type: LocalParameter
value: 0.0

571277
type: LocalParameter
value: 1000.0

571276
type: LocalParameter
value: 0.0

277300
type: SpeciesReference
stoichiometry: 1.0
species: 566242

566242
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-GMP

277312
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567752
type: Reaction
kinetic law: 281264
product: 281252
reactant: 281240
reactant: 281228
notes: GPR_ASSOCIATION: RSP_1100 GENE_LIST: RSP_1100; SUBSYSTEM: Pyrimidine metabolism Equation: IMP + H2O <=> 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide Confidence Level: 2
fast: false
reversible: true
name: IMP cyclohydrolase

571575
type: LocalParameter
value: 0.0

571574
type: LocalParameter
value: 0.0

571572
type: LocalParameter
value: 1000.0

571571
type: LocalParameter
value: -1000.0

281252
type: SpeciesReference
stoichiometry: 1.0
species: 565965

565965
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide

281240
type: SpeciesReference
stoichiometry: 1.0
species: 564345

281228
type: SpeciesReference
stoichiometry: 1.0
species: 564649

564649
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: IMP

567829
type: Reaction
product: 286442
name: sulfoacetaldehyde acetyltransferase
reactant: 286430
product: 286454
kinetic law: 286478
reversible: false
fast: false
reactant: 286418
notes: GPR_ASSOCIATION: RSP_4011 GENE_LIST: RSP_4011; SUBSYSTEM: Taurine and hypotaurine metabolism Equation: Sulfoacetaldehyde + Orthophosphate <=> Acetyl phosphate + Sulfite + H+ Confidence Level: 3
product: 286466

286442
type: SpeciesReference
stoichiometry: 1.0
species: 564799

564799
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetylphosphate

286430
type: SpeciesReference
stoichiometry: 1.0
species: 564369

286454
type: SpeciesReference
stoichiometry: 1.0
species: 564568

572349
type: LocalParameter
value: 0.0

572347
type: LocalParameter
value: 0.0

572346
type: LocalParameter
value: 1000.0

572344
type: LocalParameter
value: 0.0

286418
type: SpeciesReference
stoichiometry: 1.0
species: 566485

286466
type: SpeciesReference
stoichiometry: 1.0
species: 564535

566100
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Fructose[e]

565847
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Adenosine-GDP-cobinamide

566400
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Spheroidenone

566034
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: putrescine[p]

567581
type: Reaction
kinetic law: 269481
fast: false
reversible: true
product: 269469
reactant: 269445
product: 269457
name: 3-phosphoshikimate 1-carboxyvinyltransferase
reactant: 269433
notes: GPR_ASSOCIATION: RSP_3592 GENE_LIST: RSP_3592; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: Phosphoenolpyruvate + Shikimate 3-phosphate <=> Orthophosphate + 5-O-(1-Carboxyvinyl)-3-phosphoshikimate Confidence Level: 2

570687
type: LocalParameter
value: 0.0

570685
type: LocalParameter
value: 0.0

570684
type: LocalParameter
value: 1000.0

570683
type: LocalParameter
value: -1000.0

269469
type: SpeciesReference
stoichiometry: 1.0
species: 565337

565337
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-O-(1-Carboxyvinyl)-3-phosphoshikimate

269445
type: SpeciesReference
stoichiometry: 1.0
species: 565529

565529
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Shikimate3-phosphate

269457
type: SpeciesReference
stoichiometry: 1.0
species: 564369

269433
type: SpeciesReference
stoichiometry: 1.0
species: 564520

567666
type: Reaction
kinetic law: 275455
product: 275442
reactant: 275429
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Propanoate metabolism Equation: Citramalyl-CoA <=> L-erythro-3-Methylmalyl-CoA Confidence Level: 3
fast: false
reversible: false

571130
type: LocalParameter
value: 0.0

571128
type: LocalParameter
value: 0.0

571127
type: LocalParameter
value: 1000.0

571126
type: LocalParameter
value: 0.0

275442
type: SpeciesReference
stoichiometry: 1.0
species: 566502

566502
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-erythro-3-Methylmalyl-CoA

275429
type: SpeciesReference
stoichiometry: 1.0
species: 566505

566505
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Citramalyl-CoA

567237
type: Reaction
kinetic law: 252276
product: 252264
product: 252252
reactant: 252240
notes: GPR_ASSOCIATION: RSP_0155 or RSP_3833 or RSP_0913 or RSP_1340 or RSP_2196 GENE_LIST: RSP_0155; RSP_3833; RSP_0913; RSP_1340; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: 2-Methylprop-2-enoyl-CoA + H2O <=> (S)-3-Hydroxyisobutyryl-CoA Confidence Level: 2
fast: false
reversible: true
name: enoyl-CoA hydratase

569465
type: LocalParameter
value: 0.0

569464
type: LocalParameter
value: 0.0

569463
type: LocalParameter
value: 1000.0

569462
type: LocalParameter
value: -1000.0

252264
type: SpeciesReference
stoichiometry: 1.0
species: 564345

252252
type: SpeciesReference
stoichiometry: 1.0
species: 566368

566368
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylprop-2-enoyl-CoA

252240
type: SpeciesReference
stoichiometry: 1.0
species: 565496

565496
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxyisobutyryl-CoA

568333
type: Reaction
kinetic law: 316939
product: 316927
reactant: 316915
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: H+[e] <=> Confidence Level:
fast: false
reversible: false
name: H+ exchange

575133
type: LocalParameter
value: 0.0

575131
type: LocalParameter
value: 0.0

575130
type: LocalParameter
value: 1000.0

575128
type: LocalParameter
value: 0.0

316927
type: SpeciesReference
stoichiometry: 1.0
species: 566278

566278
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: H[e]

316915
type: SpeciesReference
stoichiometry: 1.0
species: 566276

568016
type: Reaction
reversible: false
kinetic law: 298297
product: 298284
product: 298272
fast: false
notes: GPR_ASSOCIATION: RSP_2345 GENE_LIST: RSP_2345; SUBSYSTEM: Vitamin B6 metabolism Equation: Pyridoxine phosphate + Oxygen <=> H2O2 + Pyridoxal phosphate Confidence Level: 2
reactant: 298248
reactant: 298260
name: pyridoxamine 5-phosphate oxidase

573384
type: LocalParameter
value: 0.0

573383
type: LocalParameter
value: 0.0

573381
type: LocalParameter
value: 1000.0

573380
type: LocalParameter
value: 0.0

298284
type: SpeciesReference
stoichiometry: 1.0
species: 564418

298272
type: SpeciesReference
stoichiometry: 1.0
species: 564390

564390
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxalphosphate

298248
type: SpeciesReference
stoichiometry: 1.0
species: 565991

565991
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxinephosphate

298260
type: SpeciesReference
stoichiometry: 1.0
species: 564363

565963
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Propanoate

566914
type: Reaction
product: 238182
product: 238194
name: bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
fast: false
reactant: 238146
kinetic law: 238207
reversible: true
reactant: 238170
notes: GPR_ASSOCIATION: RSP_2503 GENE_LIST: RSP_2503; SUBSYSTEM: Amino sugar and nucleotide sugar metabolism Equation: UTP + N-Acetyl-alpha-D-glucosamine 1-phosphate <=> Diphosphate + UDP-N-acetyl-D-glucosamine Confidence Level: 2
reactant: 238158

238182
type: SpeciesReference
stoichiometry: 1.0
species: 564378

238194
type: SpeciesReference
stoichiometry: 1.0
species: 564451

564451
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetyl-D-glucosamine

238146
type: SpeciesReference
stoichiometry: 1.0
species: 564523

568503
type: LocalParameter
value: 0.0

568502
type: LocalParameter
value: 0.0

568501
type: LocalParameter
value: 1000.0

568500
type: LocalParameter
value: -1000.0

238170
type: SpeciesReference
stoichiometry: 1.0
species: 564535

238158
type: SpeciesReference
stoichiometry: 1.0
species: 565700

567380
type: Reaction
name: alcohol dehydrogenase class III
reactant: 258733
product: 258757
reversible: true
product: 258745
notes: GPR_ASSOCIATION: RSP_1824 or RSP_2576 or RSP_2799 or RSP_3537 GENE_LIST: RSP_1824; RSP_2576; RSP_2799; RSP_3537; SUBSYSTEM: Glycolysis / Gluconeogenesis Equation: Ethanol + NAD+ <=> Acetaldehyde + NADH + H+ Confidence Level: 2
reactant: 258721
kinetic law: 258781
product: 258769
fast: false

258733
type: SpeciesReference
stoichiometry: 1.0
species: 564351

258757
type: SpeciesReference
stoichiometry: 1.0
species: 564354

258745
type: SpeciesReference
stoichiometry: 1.0
species: 564544

564544
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetaldehyde

258721
type: SpeciesReference
stoichiometry: 1.0
species: 565910

565910
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ethanol

569913
type: LocalParameter
value: 0.0

569912
type: LocalParameter
value: 0.0

569911
type: LocalParameter
value: 1000.0

569910
type: LocalParameter
value: -1000.0

258769
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567502
type: Reaction
name: pantoate--beta-alanine ligase
notes: GPR_ASSOCIATION: RSP_1757 GENE_LIST: RSP_1757; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + (R)-Pantoate + beta-Alanine <=> AMP + Diphosphate + Pantothenate + H= Confidence Level: 2
product: 265160
reversible: true
product: 265172
product: 265148
product: 265136
kinetic law: 265184
fast: false
reactant: 265099
reactant: 265124
reactant: 265112

265160
type: SpeciesReference
stoichiometry: 1.0
species: 565202

565202
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pantothenate

265172
type: SpeciesReference
stoichiometry: 1.0
species: 564535

265148
type: SpeciesReference
stoichiometry: 1.0
species: 564378

265136
type: SpeciesReference
stoichiometry: 1.0
species: 564396

570347
type: LocalParameter
value: 0.0

570345
type: LocalParameter
value: 0.0

570344
type: LocalParameter
value: 1000.0

570343
type: LocalParameter
value: -1000.0

265099
type: SpeciesReference
stoichiometry: 1.0
species: 564348

265124
type: SpeciesReference
stoichiometry: 1.0
species: 564580

265112
type: SpeciesReference
stoichiometry: 1.0
species: 565042

565042
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-Pantoate

566127
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Photon

568252
type: Reaction
product: 311256
reversible: true
product: 311268
reactant: 311232
kinetic law: 311280
notes: GPR_ASSOCIATION: RSP_2914 GENE_LIST: RSP_2914; SUBSYSTEM: Pyrimidine metabolism Equation: Cytidine + H2O <=> Cytosine + D-Ribose Confidence Level: 2
reactant: 311244
fast: false

311256
type: SpeciesReference
stoichiometry: 1.0
species: 564955

564955
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cytosine

311268
type: SpeciesReference
stoichiometry: 1.0
species: 564628

311232
type: SpeciesReference
stoichiometry: 1.0
species: 565027

565027
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cytidine

574676
type: LocalParameter
value: 0.0

574674
type: LocalParameter
value: 0.0

574673
type: LocalParameter
value: 1000.0

574671
type: LocalParameter
value: -1000.0

311244
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567922
type: Reaction
kinetic law: 293674
product: 293662
reactant: 293650
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Glutathione disulfide[e] <=> Glutathione disulfide[p] Confidence Level: 2
fast: false
reversible: true
name: Glutathione disulfide transport via diffusion

572860
type: LocalParameter
value: 0.0

572859
type: LocalParameter
value: 0.0

572857
type: LocalParameter
value: 1000.0

572856
type: LocalParameter
value: -1000.0

293662
type: SpeciesReference
stoichiometry: 1.0
species: 566178

566178
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glutathionedisulfide[p]

293650
type: SpeciesReference
stoichiometry: 1.0
species: 566179

566179
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glutathionedisulfide[e]

568062
type: Reaction
kinetic law: 301280
product: 301268
reactant: 301256
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-Tryptophan[e] <=> L-Tryptophan[p] Confidence Level: 2
fast: false
reversible: true
name: L-Tryptophan transport via diffusion

573637
type: LocalParameter
value: 0.0

573636
type: LocalParameter
value: 0.0

573634
type: LocalParameter
value: 1000.0

573633
type: LocalParameter
value: -1000.0

301268
type: SpeciesReference
stoichiometry: 1.0
species: 566524

566524
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Tryptophan[p]

301256
type: SpeciesReference
stoichiometry: 1.0
species: 566525

566476
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-2-Aceto-2-hydroxybutanoate

566856
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Proline[p]

566212
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Heme[e]

564898
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Citrulline

567262
type: Reaction
product: 253454
reactant: 253442
fast: false
kinetic law: 253490
reversible: true
reactant: 253429
product: 253466
notes: GPR_ASSOCIATION: RSP_0389 GENE_LIST: RSP_0389; SUBSYSTEM: Folate biosynthesis Equation: Dihydrofolate + NAD+ <=> Folate + NADH + H+ Confidence Level: 2
product: 253478
name: dihydrofolate reductase

253454
type: SpeciesReference
stoichiometry: 1.0
species: 565907

565907
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Folate

253442
type: SpeciesReference
stoichiometry: 1.0
species: 564360

569541
type: LocalParameter
value: 0.0

569540
type: LocalParameter
value: 0.0

569538
type: LocalParameter
value: 1000.0

569537
type: LocalParameter
value: -1000.0

253429
type: SpeciesReference
stoichiometry: 1.0
species: 564976

253466
type: SpeciesReference
stoichiometry: 1.0
species: 564357

253478
type: SpeciesReference
stoichiometry: 1.0
species: 564535

568069
type: Reaction
fast: false
kinetic law: 301679
reactant: 301631
product: 301667
product: 301655
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Glyoxylate[p] + Sodium[p] <=> Glyoxylate + Sodium Confidence Level: 1
reactant: 301643
reversible: false
name: Glyoxylate via Na+ symport

573676
type: LocalParameter
value: 0.0

573674
type: LocalParameter
value: 0.0

573673
type: LocalParameter
value: 1000.0

573671
type: LocalParameter
value: 0.0

301631
type: SpeciesReference
stoichiometry: 1.0
species: 566536

566536
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glyoxylate[p]

301667
type: SpeciesReference
stoichiometry: 1.0
species: 566254

301655
type: SpeciesReference
stoichiometry: 1.0
species: 564463

301643
type: SpeciesReference
stoichiometry: 1.0
species: 566255

566458
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Methyl-3-oxo-4-hexenoyl-CoA

566014
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Fe3

566767
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Biotin[e]

566720
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Hydroxy-2-oxoglutarate[e]

567352
type: Reaction
reversible: false
name: glycine cleavage system aminomethyltransferase T
reactant: 257294
reactant: 257282
product: 257306
fast: false
product: 257318
notes: GPR_ASSOCIATION: RSP_2193 GENE_LIST: RSP_2193; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: S-Aminomethyldihydrolipoylprotein + Tetrahydrofolate + H+ <=> Dihydrolipoylprotein + 5,10-Methylenetetrahydrofolate + NH3 Confidence Level: 2
reactant: 257270
kinetic law: 257342
product: 257330

257294
type: SpeciesReference
stoichiometry: 1.0
species: 564535

257282
type: SpeciesReference
stoichiometry: 1.0
species: 564586

564586
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Tetrahydrofolate

257306
type: SpeciesReference
stoichiometry: 1.0
species: 565610

565610
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dihydrolipoylprotein

257318
type: SpeciesReference
stoichiometry: 1.0
species: 564673

257270
type: SpeciesReference
stoichiometry: 1.0
species: 565595

565595
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: S-Aminomethyldihydrolipoylprotein

569803
type: LocalParameter
value: 0.0

569801
type: LocalParameter
value: 0.0

569800
type: LocalParameter
value: 1000.0

569799
type: LocalParameter
value: 0.0

257330
type: SpeciesReference
stoichiometry: 1.0
species: 564381

566154
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Isoleucine[e]

568097
type: Reaction
kinetic law: 302899
product: 302887
reactant: 302875
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: (R)-Lactate[e] <=> Confidence Level:
fast: false
reversible: false
name: (R)-Lactate exchange

573829
type: LocalParameter
value: 0.0

573828
type: LocalParameter
value: 0.0

573826
type: LocalParameter
value: 1000.0

573825
type: LocalParameter
value: 0.0

302887
type: SpeciesReference
stoichiometry: 1.0
species: 566574

566574
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-Lactate[e]

302875
type: SpeciesReference
stoichiometry: 1.0
species: 566573

566573
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-Lactate[e]

566290
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Pyruvate[e]

567743
type: Reaction
notes: GPR_ASSOCIATION: RSP_2894 GENE_LIST: RSP_2894; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + dTDP <=> ADP + dTTP Confidence Level: 2
product: 280673
fast: false
product: 280661
kinetic law: 280685
reactant: 280637
reactant: 280649
name: nucleoside diphosphate kinase
reversible: true

280673
type: SpeciesReference
stoichiometry: 1.0
species: 565015

280661
type: SpeciesReference
stoichiometry: 1.0
species: 564366

571530
type: LocalParameter
value: 0.0

571529
type: LocalParameter
value: 0.0

571527
type: LocalParameter
value: 1000.0

571526
type: LocalParameter
value: -1000.0

280637
type: SpeciesReference
stoichiometry: 1.0
species: 564348

280649
type: SpeciesReference
stoichiometry: 1.0
species: 564946

564946
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTDP

566875
type: Reaction
reversible: false
name: L-glutamine synthetase
product: 235951
kinetic law: 235999
reactant: 235939
notes: GPR_ASSOCIATION: RSP_0147 or RSP_2319 or RSP_0375 or RSP_0377 or RSP_1568 GENE_LIST: RSP_0147; RSP_2319; RSP_0375; RSP_0377; RSP_1568; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: ATP + L-Glutamate + NH3 <=> ADP + Orthophosphate + L-Glutamine + H+ Confidence Level: 3
reactant: 235927
reactant: 235915
product: 235963
fast: false
product: 235987
product: 235975

235951
type: SpeciesReference
stoichiometry: 1.0
species: 564366

568387
type: LocalParameter
value: 0.0

568386
type: LocalParameter
value: 0.0

568385
type: LocalParameter
value: 1000.0

568384
type: LocalParameter
value: 0.0

235939
type: SpeciesReference
stoichiometry: 1.0
species: 564381

235927
type: SpeciesReference
stoichiometry: 1.0
species: 564408

235915
type: SpeciesReference
stoichiometry: 1.0
species: 564348

235963
type: SpeciesReference
stoichiometry: 1.0
species: 564369

235987
type: SpeciesReference
stoichiometry: 1.0
species: 564535

235975
type: SpeciesReference
stoichiometry: 1.0
species: 564502

564502
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamine

567553
type: Reaction
kinetic law: 267506
product: 267494
product: 267482
reactant: 267470
notes: GPR_ASSOCIATION: RSP_2645 GENE_LIST: RSP_2645; SUBSYSTEM: Pentose phosphate pathway Equation: 4-Hydroxy-2-oxoglutarate <=> Pyruvate + Glyoxylate Confidence Level: 2
fast: false
reversible: true
name: 2-keto-3-deoxy-phosphogluconate aldolase

570544
type: LocalParameter
value: 0.0

570542
type: LocalParameter
value: 0.0

570541
type: LocalParameter
value: 1000.0

570540
type: LocalParameter
value: -1000.0

267494
type: SpeciesReference
stoichiometry: 1.0
species: 564463

267482
type: SpeciesReference
stoichiometry: 1.0
species: 564402

267470
type: SpeciesReference
stoichiometry: 1.0
species: 565117

565117
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Hydroxy-2-oxoglutarate

567124
type: Reaction
kinetic law: 247529
product: 247516
reactant: 247504
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: O2[e] <=> Confidence Level:
fast: false
reversible: false
name: O2 exchange

569136
type: LocalParameter
value: 0.0

569135
type: LocalParameter
value: 0.0

569134
type: LocalParameter
value: 1000.0

569133
type: LocalParameter
value: 0.0

247516
type: SpeciesReference
stoichiometry: 1.0
species: 566271

566271
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Oxygen[e]

247504
type: SpeciesReference
stoichiometry: 1.0
species: 566270

567453
type: Reaction
product: 262259
notes: GPR_ASSOCIATION: RSP_0955 or RSP_2545 GENE_LIST: RSP_0955; RSP_2545; SUBSYSTEM: Nicotinate and nicotinamide metabolism Equation: Nicotinate D-ribonucleotide + H2O <=> Nicotinate D-ribonucleoside + Orthophosphate Confidence Level: 2
product: 262247
reversible: false
reactant: 262235
kinetic law: 262271
reactant: 262223
name: 5-nucleotidase
fast: false

262259
type: SpeciesReference
stoichiometry: 1.0
species: 564369

262247
type: SpeciesReference
stoichiometry: 1.0
species: 566231

566231
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NicotinateD-ribonucleoside

262235
type: SpeciesReference
stoichiometry: 1.0
species: 564345

570168
type: LocalParameter
value: 0.0

570167
type: LocalParameter
value: 0.0

570166
type: LocalParameter
value: 1000.0

570165
type: LocalParameter
value: 0.0

262223
type: SpeciesReference
stoichiometry: 1.0
species: 565307

565307
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NicotinateD-ribonucleotide

568310
type: Reaction
kinetic law: 314910
product: 314898
reactant: 314886
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: meso-Tartaric acid[e] <=> meso-Tartaric acid[p] Confidence Level: 2
fast: false
reversible: true
name: meso-Tartaric acid transport via diffusion

575006
type: LocalParameter
value: 0.0

575005
type: LocalParameter
value: 0.0

575003
type: LocalParameter
value: 1000.0

575002
type: LocalParameter
value: -1000.0

314898
type: SpeciesReference
stoichiometry: 1.0
species: 566820

566820
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: meso-Tartaricacid[p]

314886
type: SpeciesReference
stoichiometry: 1.0
species: 566822

566822
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: meso-Tartaricacid[e]

568227
type: Reaction
kinetic law: 309017
product: 309005
reactant: 308993
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Chitobiose[e] <=> Chitobiose[p] Confidence Level: 2
fast: false
reversible: true
name: Chitobiose transport via diffusion

574538
type: LocalParameter
value: 0.0

574537
type: LocalParameter
value: 0.0

574535
type: LocalParameter
value: 1000.0

574534
type: LocalParameter
value: -1000.0

309005
type: SpeciesReference
stoichiometry: 1.0
species: 566738

566738
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Chitobiose[p]

308993
type: SpeciesReference
stoichiometry: 1.0
species: 566739

566739
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Chitobiose[e]

566996
type: Reaction
reversible: true
product: 242710
product: 242722
reactant: 242686
product: 242734
kinetic law: 242746
name: phytoene dehydrogenase
fast: false
reactant: 242698
notes: GPR_ASSOCIATION: RSP_0271 GENE_LIST: RSP_0271; SUBSYSTEM: Carotenoid biosynthesis Equation: Phytofluene + NAD+ <=> zeta-Carotene + NADH + H+ Confidence Level: 4

242710
type: SpeciesReference
stoichiometry: 1.0
species: 566385

566385
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: zeta-Carotene

242722
type: SpeciesReference
stoichiometry: 1.0
species: 564354

242686
type: SpeciesReference
stoichiometry: 1.0
species: 566383

566383
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phytofluene

242734
type: SpeciesReference
stoichiometry: 1.0
species: 564535

568760
type: LocalParameter
value: 0.0

568759
type: LocalParameter
value: 0.0

568758
type: LocalParameter
value: 1000.0

568757
type: LocalParameter
value: -1000.0

242698
type: SpeciesReference
stoichiometry: 1.0
species: 564351

565138
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Urocanate

567182
type: Reaction
product: 250049
reactant: 250013
notes: GPR_ASSOCIATION: RSP_3888 or RSP_3440 or RSP_3062 or RSP_2538 or RSP_2461 or RSP_2371 or RSP_0610 GENE_LIST: RSP_3888; RSP_3440; RSP_3062; RSP_2538; RSP_2461; RSP_2371; RSP_0610; SUBSYSTEM: Fatty acid biosynthesis Equation: (3R)-3-Hydroxypalmitoyl-[acyl-carrier protein] + NADP+ <=> 3-Oxohexadecanoyl-[acp] + NADPH + H+ Confidence Level: 2
product: 250061
product: 250037
fast: false
reversible: true
name: 3-oxoacyl-[acyl-carrier-protein] reductase
reactant: 250025
kinetic law: 250073

250049
type: SpeciesReference
stoichiometry: 1.0
species: 564357

250013
type: SpeciesReference
stoichiometry: 1.0
species: 566429

566429
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (3R)-3-Hydroxypalmitoyl-[acyl-carrierprotein]

250061
type: SpeciesReference
stoichiometry: 1.0
species: 564535

250037
type: SpeciesReference
stoichiometry: 1.0
species: 566430

566430
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxohexadecanoyl-[acp]

250025
type: SpeciesReference
stoichiometry: 1.0
species: 564360

569312
type: LocalParameter
value: 0.0

569311
type: LocalParameter
value: 0.0

569310
type: LocalParameter
value: 1000.0

569309
type: LocalParameter
value: -1000.0

568146
type: Reaction
kinetic law: 305060
product: 305048
reactant: 305036
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: D-Glycerate[e] <=> D-Glycerate[p] Confidence Level: 2
fast: false
reversible: true
name: D-Glycerate transport via diffusion

574093
type: LocalParameter
value: 0.0

574092
type: LocalParameter
value: 0.0

574090
type: LocalParameter
value: 1000.0

574089
type: LocalParameter
value: -1000.0

305048
type: SpeciesReference
stoichiometry: 1.0
species: 566636

566636
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Glycerate[p]

305036
type: SpeciesReference
stoichiometry: 1.0
species: 566637

566637
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Glycerate[e]

565274
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Histidinolphosphate

566664
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Propanoate[p]

567913
type: Reaction
kinetic law: 293349
product: 293337
reactant: 293325
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-cysteine[e] <=> L-cysteine[p] Confidence Level: 2
fast: false
reversible: true
name: cysteine transport via diffusion

572811
type: LocalParameter
value: 0.0

572809
type: LocalParameter
value: 0.0

572808
type: LocalParameter
value: 1000.0

572806
type: LocalParameter
value: -1000.0

293337
type: SpeciesReference
stoichiometry: 1.0
species: 566140

566140
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Cysteine[p]

293325
type: SpeciesReference
stoichiometry: 1.0
species: 566142

566142
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Cysteine[e]

564934
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Geranylgeranyldiphosphate

566438
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dodecanoyl-[acyl-carrierprotein]

567631
type: Reaction
product: 273015
notes: GPR_ASSOCIATION: RSP_2427 GENE_LIST: RSP_2427; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Adenosine-GDP-cobinamide + alpha-Ribazole <=> Cobamide coenzyme + GMP + H+ Confidence Level: 2
kinetic law: 273052
product: 273027
product: 273039
reactant: 273003
name: cobalamin-5-phosphate synthase
fast: false
reactant: 272991
reversible: true

273015
type: SpeciesReference
stoichiometry: 1.0
species: 564754

570946
type: LocalParameter
value: 0.0

570944
type: LocalParameter
value: 0.0

570943
type: LocalParameter
value: 1000.0

570942
type: LocalParameter
value: -1000.0

273027
type: SpeciesReference
stoichiometry: 1.0
species: 564676

273039
type: SpeciesReference
stoichiometry: 1.0
species: 564535

273003
type: SpeciesReference
stoichiometry: 1.0
species: 565805

272991
type: SpeciesReference
stoichiometry: 1.0
species: 565847

568082
type: Reaction
kinetic law: 302235
product: 302223
reactant: 302211
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Urea[e] <=> Confidence Level:
fast: false
reversible: false
name: Urea exchange

573747
type: LocalParameter
value: 0.0

573745
type: LocalParameter
value: 0.0

573744
type: LocalParameter
value: 1000.0

573742
type: LocalParameter
value: 0.0

302223
type: SpeciesReference
stoichiometry: 1.0
species: 566554

566554
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Urea[e]

302211
type: SpeciesReference
stoichiometry: 1.0
species: 566553

568111
type: Reaction
product: 303489
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: D-Glucuronate[p] + H+[p] <=> D-Glucuronate + H+ Confidence Level: 1
product: 303476
reactant: 303452
reversible: true
name: D-Glucuronate via proton symport
fast: false
kinetic law: 303501
reactant: 303464

303489
type: SpeciesReference
stoichiometry: 1.0
species: 564535

303476
type: SpeciesReference
stoichiometry: 1.0
species: 564751

564751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glucuronate

303452
type: SpeciesReference
stoichiometry: 1.0
species: 566592

573906
type: LocalParameter
value: 0.0

573905
type: LocalParameter
value: 0.0

573903
type: LocalParameter
value: 1000.0

573902
type: LocalParameter
value: -1000.0

303464
type: SpeciesReference
stoichiometry: 1.0
species: 566248

565968
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dGDP

566967
type: Reaction
kinetic law: 241228
product: 241216
reactant: 241204
notes: GPR_ASSOCIATION: RSP_3519 GENE_LIST: RSP_3519; SUBSYSTEM: Arginine and proline metabolism Equation: L-Proline <=> D-Proline Confidence Level: 2
fast: false
reversible: true
name: putative proline racemase

568672
type: LocalParameter
value: 0.0

568671
type: LocalParameter
value: 0.0

568670
type: LocalParameter
value: 1000.0

568669
type: LocalParameter
value: -1000.0

241216
type: SpeciesReference
stoichiometry: 1.0
species: 565135

565135
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Proline

241204
type: SpeciesReference
stoichiometry: 1.0
species: 564682

564682
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Proline

567545
type: Reaction
kinetic law: 267191
product: 267179
product: 267167
reactant: 267155
notes: GPR_ASSOCIATION: RSP_3739 GENE_LIST: RSP_3739; SUBSYSTEM: Pentose phosphate pathway Equation: 2-Deoxy-D-ribose 5-phosphate <=> D-Glyceraldehyde 3-phosphate + Acetaldehyde Confidence Level: 2
fast: false
reversible: true
name: deoxyribose phosphate aldolase

570513
type: LocalParameter
value: 0.0

570511
type: LocalParameter
value: 0.0

570510
type: LocalParameter
value: 1000.0

570509
type: LocalParameter
value: -1000.0

267179
type: SpeciesReference
stoichiometry: 1.0
species: 564544

267167
type: SpeciesReference
stoichiometry: 1.0
species: 564619

564619
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glyceraldehyde3-phosphate

267155
type: SpeciesReference
stoichiometry: 1.0
species: 565105

565105
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Deoxy-D-ribose5-phosphate

567062
type: Reaction
kinetic law: 245899
product: 245887
reactant: 245875
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-arginine[e] <=> Confidence Level:
fast: false
reversible: false
name: arginine exchange

568954
type: LocalParameter
value: 0.0

568953
type: LocalParameter
value: 0.0

568951
type: LocalParameter
value: 1000.0

568950
type: LocalParameter
value: 0.0

245887
type: SpeciesReference
stoichiometry: 1.0
species: 566131

566131
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Arginine[e]

245875
type: SpeciesReference
stoichiometry: 1.0
species: 566130

566130
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Arginine[e]

565709
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: di-trans,poly-cis-Undecaprenyldiphosphate

568212
type: Reaction
kinetic law: 308282
product: 308270
reactant: 308258
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: D-Altronate[e] <=> Confidence Level:
fast: false
reversible: false
name: D-Altronate exchange

574456
type: LocalParameter
value: 0.0

574455
type: LocalParameter
value: 0.0

574453
type: LocalParameter
value: 1000.0

574452
type: LocalParameter
value: 0.0

308270
type: SpeciesReference
stoichiometry: 1.0
species: 566725

566725
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Altronate[e]

308258
type: SpeciesReference
stoichiometry: 1.0
species: 566724

566724
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Altronate[e]

566895
type: Reaction
product: 237166
fast: false
product: 237142
name: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
reactant: 237105
product: 237154
notes: GPR_ASSOCIATION: RSP_2166 GENE_LIST: RSP_2166; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-1-Pyrroline-3-hydroxy-5-carboxylate + NADP+ + 2 H2O <=> L-erythro-4-Hydroxyglutamate + NADPH + H+ Confidence Level: 2
reactant: 237130
reactant: 237117
kinetic law: 237178
reversible: true

237166
type: SpeciesReference
stoichiometry: 2.0
species: 564535

237142
type: SpeciesReference
stoichiometry: 1.0
species: 566119

566119
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-erythro-4-Hydroxyglutamate

237105
type: SpeciesReference
stoichiometry: 1.0
species: 566122

566122
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-1-Pyrroline-3-hydroxy-5-carboxylate

237154
type: SpeciesReference
stoichiometry: 1.0
species: 564357

237130
type: SpeciesReference
stoichiometry: 2.0
species: 564345

237117
type: SpeciesReference
stoichiometry: 1.0
species: 564360

568447
type: LocalParameter
value: 0.0

568446
type: LocalParameter
value: 0.0

568445
type: LocalParameter
value: 1000.0

568444
type: LocalParameter
value: -1000.0

568302
type: Reaction
reversible: true
reactant: 314522
product: 314547
fast: false
product: 314559
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Glycolaldehyde[p] + H+[p] <=> Glycolaldehyde + H+ Confidence Level: 1
name: Glycolaldehyde via proton symport
kinetic law: 314571
reactant: 314535

314522
type: SpeciesReference
stoichiometry: 1.0
species: 566808

566808
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glycolaldehyde[p]

314547
type: SpeciesReference
stoichiometry: 1.0
species: 564853

564853
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycolaldehyde

314559
type: SpeciesReference
stoichiometry: 1.0
species: 564535

574962
type: LocalParameter
value: 0.0

574961
type: LocalParameter
value: 0.0

574959
type: LocalParameter
value: 1000.0

574958
type: LocalParameter
value: -1000.0

314535
type: SpeciesReference
stoichiometry: 1.0
species: 566248

566924
type: Reaction
reactant: 238681
fast: false
product: 238705
product: 238717
reversible: false
notes: GPR_ASSOCIATION: (RSP_2270 and RSP_1986 and RSP_6043) or (RSP_1493 and RSP_1986 and RSP_6043) or (RSP_3369 and RSP_1986 and RSP_6043) GENE_LIST: RSP_2270; RSP_1986; RSP_6043; RSP_1493; RSP_1986; RSP_6043; RSP_3369; RSP_1986; RSP_6043; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: L-Aspartyl-tRNA(Asn) + L-Glutamine + ATP + H2O <=> L-Asparaginyl-tRNA(Asn) + L-Glutamate + Orthophosphate + ADP Confidence Level: 2
product: 238729
reactant: 238656
kinetic law: 238753
reactant: 238693
product: 238741
name: aspartyl/glutamyl-tRNA amidotransferase
reactant: 238669

238681
type: SpeciesReference
stoichiometry: 1.0
species: 564348

238705
type: SpeciesReference
stoichiometry: 1.0
species: 565559

565559
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Asparaginyl-tRNA(Asn)

238717
type: SpeciesReference
stoichiometry: 1.0
species: 564408

238729
type: SpeciesReference
stoichiometry: 1.0
species: 564369

238656
type: SpeciesReference
stoichiometry: 1.0
species: 565817

568535
type: LocalParameter
value: 0.0

568534
type: LocalParameter
value: 0.0

568533
type: LocalParameter
value: 1000.0

568532
type: LocalParameter
value: 0.0

238693
type: SpeciesReference
stoichiometry: 1.0
species: 564345

238741
type: SpeciesReference
stoichiometry: 1.0
species: 564366

238669
type: SpeciesReference
stoichiometry: 1.0
species: 564502

567965
type: Reaction
kinetic law: 295239
product: 295227
reactant: 295215
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 2-Oxopentanoic acid[e] <=> 2-Oxopentanoic acid[p] Confidence Level: 2
fast: false
reversible: true
name: 2-Oxopentanoic acid transport via diffusion

573100
type: LocalParameter
value: 0.0

573098
type: LocalParameter
value: 0.0

573097
type: LocalParameter
value: 1000.0

573095
type: LocalParameter
value: -1000.0

295227
type: SpeciesReference
stoichiometry: 1.0
species: 566296

295215
type: SpeciesReference
stoichiometry: 1.0
species: 566298

567682
type: Reaction
product: 276657
reactant: 276633
name: phosphoribosylaminoimidazolecarboxamide formyltransferase
product: 276645
reactant: 276621
notes: GPR_ASSOCIATION: RSP_1100 GENE_LIST: RSP_1100; SUBSYSTEM: Purine metabolism Equation: 10-Formyltetrahydrofolate + 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide <=> Tetrahydrofolate + 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide Confidence Level: 2
reversible: true
fast: false
kinetic law: 276669

276657
type: SpeciesReference
stoichiometry: 1.0
species: 565965

276633
type: SpeciesReference
stoichiometry: 1.0
species: 565922

276645
type: SpeciesReference
stoichiometry: 1.0
species: 564586

276621
type: SpeciesReference
stoichiometry: 1.0
species: 564811

564811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 10-Formyltetrahydrofolate

571213
type: LocalParameter
value: 0.0

571211
type: LocalParameter
value: 0.0

571210
type: LocalParameter
value: 1000.0

571209
type: LocalParameter
value: -1000.0

567312
type: Reaction
kinetic law: 255855
fast: false
product: 255831
reactant: 255807
notes: GPR_ASSOCIATION: RSP_0719 GENE_LIST: RSP_0719; SUBSYSTEM: Glycerophospholipid metabolism Equation: Phosphatidylserine <=> Phosphatidylethanolamine + CO2 Confidence Level: 3
product: 255843
reversible: false
name: phosphatidylserine decarboxylase
reactant: 255819

569688
type: LocalParameter
value: 0.0

569687
type: LocalParameter
value: 0.0

569686
type: LocalParameter
value: 1000.0

569685
type: LocalParameter
value: 0.0

255831
type: SpeciesReference
stoichiometry: 1.0
species: 564928

564928
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylethanolamine

255807
type: SpeciesReference
stoichiometry: 1.0
species: 565481

565481
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidylserine

255843
type: SpeciesReference
stoichiometry: 1.0
species: 564375

255819
type: SpeciesReference
stoichiometry: 1.0
species: 564535

566508
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Nickel[p]

566114
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Aspartate[e]

566644
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Hydrogen[p]

565205
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dephospho-CoA

565777
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-D-

564988
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Aminolevulinate

566754
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3-Phospho-D-glycerate[p]

566188
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Cu2+[e]

567570
type: Reaction
reactant: 268756
product: 268780
reactant: 268744
reversible: true
notes: GPR_ASSOCIATION: RSP_2107 GENE_LIST: RSP_2107; SUBSYSTEM: Peptidoglycan biosynthesis Equation: MurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala)-diphospho- undecaprenol + UDP-N-acetyl-D-glucosamine + 2 H+ <=> Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L- alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine + UDP Confidence Level: 2
fast: false
kinetic law: 268792
product: 268768
reactant: 268732

268756
type: SpeciesReference
stoichiometry: 2.0
species: 564535

268780
type: SpeciesReference
stoichiometry: 1.0
species: 564384

564384
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP

268744
type: SpeciesReference
stoichiometry: 1.0
species: 564451

570631
type: LocalParameter
value: 0.0

570629
type: LocalParameter
value: 0.0

570628
type: LocalParameter
value: 1000.0

570627
type: LocalParameter
value: -1000.0

268768
type: SpeciesReference
stoichiometry: 1.0
species: 566493

566493
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine

268732
type: SpeciesReference
stoichiometry: 1.0
species: 565766

565766
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: MurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala)-diphospho-

567141
type: Reaction
kinetic law: 248009
product: 247997
reactant: 247985
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Glycine[e] <=> Confidence Level:
fast: false
reversible: false
name: Glycine exchange

569188
type: LocalParameter
value: 0.0

569187
type: LocalParameter
value: 0.0

569186
type: LocalParameter
value: 1000.0

569185
type: LocalParameter
value: 0.0

247997
type: SpeciesReference
stoichiometry: 1.0
species: 566327

566327
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycine[e]

247985
type: SpeciesReference
stoichiometry: 1.0
species: 566326

566326
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycine[e]

566143
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Cysteine[e]

567226
type: Reaction
kinetic law: 251937
product: 251925
product: 251913
reactant: 251901
notes: GPR_ASSOCIATION: RSP_0155 or RSP_3833 or RSP_0913 or RSP_1340 or RSP_2196 GENE_LIST: RSP_0155; RSP_3833; RSP_0913; RSP_1340; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: (S)-3-Hydroxytetradecanoyl-CoA <=> trans-Tetradec-2-enoyl-CoA + H2O Confidence Level: 2
fast: false
reversible: true
name: enoyl-CoA hydratase

569437
type: LocalParameter
value: 0.0

569436
type: LocalParameter
value: 0.0

569435
type: LocalParameter
value: 1000.0

569434
type: LocalParameter
value: -1000.0

251925
type: SpeciesReference
stoichiometry: 1.0
species: 564345

251913
type: SpeciesReference
stoichiometry: 1.0
species: 566354

566354
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Tetradec-2-enoyl-CoA

251901
type: SpeciesReference
stoichiometry: 1.0
species: 565655

565655
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxytetradecanoyl-CoA

567231
type: Reaction
kinetic law: 252083
product: 252071
product: 252059
reactant: 252046
notes: GPR_ASSOCIATION: RSP_0155 or RSP_3833 or RSP_0913 or RSP_1340 or RSP_2196 GENE_LIST: RSP_0155; RSP_3833; RSP_0913; RSP_1340; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: (S)-Hydroxyoctanoyl-CoA <=> trans-Oct-2-enoyl-CoA + H2O Confidence Level: 2
fast: false
reversible: true
name: enoyl-CoA hydratase

569449
type: LocalParameter
value: 0.0

569448
type: LocalParameter
value: 0.0

569447
type: LocalParameter
value: 1000.0

569446
type: LocalParameter
value: -1000.0

252071
type: SpeciesReference
stoichiometry: 1.0
species: 564345

252059
type: SpeciesReference
stoichiometry: 1.0
species: 566362

566362
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Oct-2-enoyl-CoA

252046
type: SpeciesReference
stoichiometry: 1.0
species: 565613

565613
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Hydroxyoctanoyl-CoA

567014
type: Reaction
kinetic law: 243485
product: 243473
reactant: 243461
reactant: 243449
notes: GPR_ASSOCIATION: RSP_0267 GENE_LIST: RSP_0267; SUBSYSTEM: Carotenoid biosynthesis Equation: Spheroidenone + H2O <=> Hydroxyspheroidenone Confidence Level: 3
fast: false
reversible: true
name: hydroxyneurosporene synthase

568812
type: LocalParameter
value: 0.0

568811
type: LocalParameter
value: 0.0

568810
type: LocalParameter
value: 1000.0

568809
type: LocalParameter
value: -1000.0

243473
type: SpeciesReference
stoichiometry: 1.0
species: 566401

566401
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxyspheroidenone

243461
type: SpeciesReference
stoichiometry: 1.0
species: 564345

243449
type: SpeciesReference
stoichiometry: 1.0
species: 566400

566075
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Mannitol[e]

568005
type: Reaction
notes: GPR_ASSOCIATION: RSP_1294 GENE_LIST: RSP_1294; SUBSYSTEM: Valine, leucine and isoleucine degradation Equation: 3-Methyl-2-oxobutanoic acid + Enzyme N6-(lipoyl)lysine + H+ <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylpropanoyl)dihydrolipoyllysine + CO2 Confidence Level: 2
name: branched-chain alpha-keto acid dehydrogenase E1 component
fast: false
product: 297500
reversible: true
reactant: 297464
product: 297512
reactant: 297488
reactant: 297476
kinetic law: 297524

297500
type: SpeciesReference
stoichiometry: 1.0
species: 565879

565879
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: [Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase]

297464
type: SpeciesReference
stoichiometry: 1.0
species: 564670

297512
type: SpeciesReference
stoichiometry: 1.0
species: 564375

297488
type: SpeciesReference
stoichiometry: 1.0
species: 564535

297476
type: SpeciesReference
stoichiometry: 1.0
species: 565876

573324
type: LocalParameter
value: 0.0

573322
type: LocalParameter
value: 0.0

573321
type: LocalParameter
value: 1000.0

573319
type: LocalParameter
value: -1000.0

565891
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-6-sulfoquinovose

567952
type: Reaction
kinetic law: 294765
product: 294753
reactant: 294741
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: aspartate[e] <=> aspartate[p] Confidence Level: 2
fast: false
reversible: true
name: L-aspartate transport via diffusion

573025
type: LocalParameter
value: 0.0

573023
type: LocalParameter
value: 0.0

573022
type: LocalParameter
value: 1000.0

573020
type: LocalParameter
value: -1000.0

294753
type: SpeciesReference
stoichiometry: 1.0
species: 566111

566111
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Aspartate[p]

294741
type: SpeciesReference
stoichiometry: 1.0
species: 566112

566112
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Aspartate[e]

566959
type: Reaction
product: 240781
reactant: 240745
name: hypothetical protein/gamma-glutamylputrescine oxidase
reactant: 240757
product: 240805
reversible: false
kinetic law: 240817
reactant: 240769
fast: false
product: 240793
notes: GPR_ASSOCIATION: RSP_0378 GENE_LIST: RSP_0378; SUBSYSTEM: Arginine and proline metabolism Equation: gamma-L-Glutamylputrescine + H2O + Oxygen <=> gamma-Glutamyl-gamma-aminobutyraldehyde + NH3 + H2O2 Confidence Level: 2

240781
type: SpeciesReference
stoichiometry: 1.0
species: 565915

565915
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: gamma-Glutamyl-gamma-aminobutyraldehyde

240745
type: SpeciesReference
stoichiometry: 1.0
species: 565913

565913
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: gamma-L-Glutamylputrescine

240757
type: SpeciesReference
stoichiometry: 1.0
species: 564345

240805
type: SpeciesReference
stoichiometry: 1.0
species: 564418

568648
type: LocalParameter
value: 0.0

568647
type: LocalParameter
value: 0.0

568646
type: LocalParameter
value: 1000.0

568645
type: LocalParameter
value: 0.0

240769
type: SpeciesReference
stoichiometry: 1.0
species: 564363

240793
type: SpeciesReference
stoichiometry: 1.0
species: 564381

568241
type: Reaction
kinetic law: 309764
product: 309752
reactant: 309740
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: (R)-2-Methylmalate[e] <=> (R)-2-Methylmalate[p] Confidence Level: 2
fast: false
reversible: true
name: (R)-2-Methylmalate transport via diffusion

574615
type: LocalParameter
value: 0.0

574614
type: LocalParameter
value: 0.0

574612
type: LocalParameter
value: 1000.0

574611
type: LocalParameter
value: -1000.0

309752
type: SpeciesReference
stoichiometry: 1.0
species: 566750

566750
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (R)-2-Methylmalate[p]

309740
type: SpeciesReference
stoichiometry: 1.0
species: 566751

566751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-2-Methylmalate[e]

568106
type: Reaction
kinetic law: 303272
product: 303260
reactant: 303248
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Magnesium[e] <=> Confidence Level:
fast: false
reversible: false
name: Magnesium exchange

573879
type: LocalParameter
value: 0.0

573877
type: LocalParameter
value: 0.0

573876
type: LocalParameter
value: 1000.0

573874
type: LocalParameter
value: 0.0

303260
type: SpeciesReference
stoichiometry: 1.0
species: 566586

566586
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Magnesium[e]

303248
type: SpeciesReference
stoichiometry: 1.0
species: 566585

566585
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Magnesium[e]

567986
type: Reaction
kinetic law: 296351
product: 296339
product: 296326
reactant: 296313
notes: GPR_ASSOCIATION: RSP_0863 and RSP_0862 GENE_LIST: RSP_0863; RSP_0862; SUBSYSTEM: Valine, leucine and isoleucine biosynthesis Equation: D-erythro-3-Methylmalate <=> 2-Methylmaleate Confidence Level: 2
fast: false
reversible: true
name: isopropylmalate isomerase

573209
type: LocalParameter
value: 0.0

573208
type: LocalParameter
value: 0.0

573207
type: LocalParameter
value: 1000.0

573205
type: LocalParameter
value: -1000.0

296339
type: SpeciesReference
stoichiometry: 1.0
species: 564345

296326
type: SpeciesReference
stoichiometry: 1.0
species: 566481

566481
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylmaleate

296313
type: SpeciesReference
stoichiometry: 1.0
species: 565814

565814
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-erythro-3-Methylmalate

567192
type: Reaction
name: 3-oxoacyl-[acyl-carrier-protein] synthase I
product: 250616
notes: GPR_ASSOCIATION: RSP_3177 or RSP_3468 or RSP_2464 or RSP_2777 GENE_LIST: RSP_3177; RSP_3468; RSP_2464; RSP_2777; SUBSYSTEM: Fatty acid biosynthesis Equation: Dodecanoyl-[acyl-carrier protein] + Malonyl-[acyl-carrier protein] <=> 3-Oxotetradecanoyl-[acp] + CO2 + Acyl-carrier protein Confidence Level: 2
product: 250629
fast: false
reversible: true
reactant: 250579
product: 250604
reactant: 250591
kinetic law: 250641

250616
type: SpeciesReference
stoichiometry: 1.0
species: 564375

250629
type: SpeciesReference
stoichiometry: 1.0
species: 564802

250579
type: SpeciesReference
stoichiometry: 1.0
species: 566438

250604
type: SpeciesReference
stoichiometry: 1.0
species: 566426

566426
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxotetradecanoyl-[acp]

250591
type: SpeciesReference
stoichiometry: 1.0
species: 565313

565313
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Malonyl-[acyl-carrierprotein]

569344
type: LocalParameter
value: 0.0

569343
type: LocalParameter
value: 0.0

569342
type: LocalParameter
value: 1000.0

569341
type: LocalParameter
value: -1000.0

567803
type: Reaction
reactant: 284742
kinetic law: 284778
reversible: true
name: FMN adenylyltransferase / riboflavin kinase
reactant: 284729
product: 284766
notes: GPR_ASSOCIATION: RSP_2304 GENE_LIST: RSP_2304; SUBSYSTEM: Riboflavin metabolism Equation: ATP + FMN + 2 H+ <=> Diphosphate + FAD Confidence Level: 2
fast: false
product: 284754
reactant: 284717

284742
type: SpeciesReference
stoichiometry: 1.0
species: 564535

572207
type: LocalParameter
value: 0.0

572206
type: LocalParameter
value: 0.0

572204
type: LocalParameter
value: 1000.0

572203
type: LocalParameter
value: -1000.0

284729
type: SpeciesReference
stoichiometry: 1.0
species: 564493

564493
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: FMN

284766
type: SpeciesReference
stoichiometry: 1.0
species: 564387

284754
type: SpeciesReference
stoichiometry: 1.0
species: 564378

284717
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567298
type: Reaction
kinetic law: 255153
product: 255141
fast: false
product: 255129
product: 255117
reactant: 255105
name: glycerol kinase
notes: GPR_ASSOCIATION: RSP_2662 GENE_LIST: RSP_2662; SUBSYSTEM: Glycerophospholipid metabolism Equation: ATP + Glycerol <=> ADP + sn-Glycerol 3-phosphate Confidence Level: 4
reactant: 255094
reversible: true

569643
type: LocalParameter
value: 0.0

569642
type: LocalParameter
value: 0.0

569641
type: LocalParameter
value: 1000.0

569640
type: LocalParameter
value: -1000.0

255141
type: SpeciesReference
stoichiometry: 1.0
species: 564535

255129
type: SpeciesReference
stoichiometry: 1.0
species: 564565

564565
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: sn-Glycerol3-phosphate

255117
type: SpeciesReference
stoichiometry: 1.0
species: 564366

255105
type: SpeciesReference
stoichiometry: 1.0
species: 564613

564613
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glycerol

255094
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567732
type: Reaction
name: 2,3-cyclic-nucleotide 2-phosphodiesterase
reactant: 279925
kinetic law: 279973
reversible: true
fast: false
notes: GPR_ASSOCIATION: RSP_0709 GENE_LIST: RSP_0709; SUBSYSTEM: Purine metabolism Equation: 2',3'-Cyclic GMP + H2O <=> Guanosine 3'-phosphate + H+ Confidence Level: 2
product: 279949
product: 279961
reactant: 279937

279925
type: SpeciesReference
stoichiometry: 1.0
species: 566454

566454
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2',3'-CyclicGMP

571475
type: LocalParameter
value: 0.0

571474
type: LocalParameter
value: 0.0

571472
type: LocalParameter
value: 1000.0

571471
type: LocalParameter
value: -1000.0

279949
type: SpeciesReference
stoichiometry: 1.0
species: 566242

279961
type: SpeciesReference
stoichiometry: 1.0
species: 564535

279937
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567303
type: Reaction
notes: GPR_ASSOCIATION: RSP_0721 GENE_LIST: RSP_0721; SUBSYSTEM: Glycerophospholipid metabolism Equation: S-Adenosyl-L-methionine + Phosphatidyl-N-methylethanolamine <=> S-Adenosyl-L-homocysteine + Phosphatidyl-N-dimethylethanolamine Confidence Level: 4
reactant: 255358
reactant: 255346
product: 255370
reversible: true
kinetic law: 255395
name: phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase
fast: false
product: 255382

255358
type: SpeciesReference
stoichiometry: 1.0
species: 565325

565325
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phosphatidyl-N-methylethanolamine

255346
type: SpeciesReference
stoichiometry: 1.0
species: 564393

255370
type: SpeciesReference
stoichiometry: 1.0
species: 564399

569659
type: LocalParameter
value: 0.0

569658
type: LocalParameter
value: 0.0

569657
type: LocalParameter
value: 1000.0

569656
type: LocalParameter
value: -1000.0

255382
type: SpeciesReference
stoichiometry: 1.0
species: 566378

567113
type: Reaction
kinetic law: 247274
product: 247262
reactant: 247250
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: aspartate[e] <=> Confidence Level:
fast: false
reversible: false
name: aspartate exchange

569108
type: LocalParameter
value: 0.0

569107
type: LocalParameter
value: 0.0

569106
type: LocalParameter
value: 1000.0

569105
type: LocalParameter
value: 0.0

247262
type: SpeciesReference
stoichiometry: 1.0
species: 566114

247250
type: SpeciesReference
stoichiometry: 1.0
species: 566112

566468
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2R,3S)-3-Isopropylmalate

566682
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicAMP[e]

566206
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Co2[p]

566593
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Glucuronate[e]

564733
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Agmatine

566006
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glutaminyl-tRNA

565604
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-4-Amino-5-oxopentanoate

566316
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Alanine[p]

566846
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5'-Deoxyadenosine[e]

566452
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2',3'-CyclicCMP

566363
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-2-Methylbutanoyl-CoA

566712
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycolate[e]

567854
type: Reaction
reactant: 288320
name: ABC Fe3+ transport
kinetic law: 288392
reactant: 288308
reversible: false
product: 288368
notes: GPR_ASSOCIATION: (RSP_3413 and RSP_3414 and RSP_3415 and RSP_3416) or (RSP_3392 and RSP_3391 and RSP_3390) or (RSP_2403 and RSP_2404 and RSP_2405) or (RSP_1439 and RSP_1437 and RSP_1438) or (RSP_3079 and RSP_3220 and RSP_3222 and RSP_3221) GENE_LIST: RSP_3413; RSP_3414; RSP_3415; RSP_3416; RSP_3392; RSP_3391; RSP_3390; RSP_2403; RSP_2404; RSP_2405; RSP_1439; RSP_1437; RSP_1438; RSP_3079; RSP_3220; RSP_3222; RSP_3221; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Fe3+[p] <=> ADP + H+ + Orthophosphate + Fe3+ Confidence Level: 3
reactant: 288332
fast: false
product: 288380
product: 288344
product: 288356

288320
type: SpeciesReference
stoichiometry: 1.0
species: 564345

572486
type: LocalParameter
value: 0.0

572484
type: LocalParameter
value: 0.0

572483
type: LocalParameter
value: 1000.0

572481
type: LocalParameter
value: 0.0

288308
type: SpeciesReference
stoichiometry: 1.0
species: 564348

288368
type: SpeciesReference
stoichiometry: 1.0
species: 564369

288332
type: SpeciesReference
stoichiometry: 1.0
species: 566042

566042
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Fe3[p]

288380
type: SpeciesReference
stoichiometry: 1.0
species: 566014

288344
type: SpeciesReference
stoichiometry: 1.0
species: 564366

288356
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567902
type: Reaction
name: Sodium/Calcium antiporter (1:1)
reactant: 292723
product: 292735
reversible: true
reactant: 292711
notes: GPR_ASSOCIATION: RSP_2638 GENE_LIST: RSP_2638; SUBSYSTEM: Transport, inner membrane Equation: Calcium + Sodium[p] <=> <=> Calcium[p] + Sodium Confidence Level: 2
kinetic law: 292759
product: 292747
fast: false

292723
type: SpeciesReference
stoichiometry: 1.0
species: 566255

292735
type: SpeciesReference
stoichiometry: 1.0
species: 566260

566260
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Calcium[p]

292711
type: SpeciesReference
stoichiometry: 1.0
species: 566259

566259
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Calcium

572751
type: LocalParameter
value: 0.0

572749
type: LocalParameter
value: 0.0

572748
type: LocalParameter
value: 1000.0

572746
type: LocalParameter
value: -1000.0

292747
type: SpeciesReference
stoichiometry: 1.0
species: 566254

566033
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: thiamine[e]

567561
type: Reaction
reactant: 267998
notes: GPR_ASSOCIATION: RSP_2103 GENE_LIST: RSP_2103; SUBSYSTEM: Peptidoglycan biosynthesis Equation: ATP + UDP-N-acetylmuramoyl-L-alanine + D-Glutamate <=> ADP + Confidence Level: 2
fast: false
product: 268058
reactant: 267986
kinetic law: 268071
product: 268022
reactant: 268010
reversible: true
product: 268034
name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
product: 268046

267998
type: SpeciesReference
stoichiometry: 1.0
species: 565316

565316
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramoyl-L-alanine

268058
type: SpeciesReference
stoichiometry: 1.0
species: 564535

267986
type: SpeciesReference
stoichiometry: 1.0
species: 564348

570585
type: LocalParameter
value: 0.0

570583
type: LocalParameter
value: 0.0

570582
type: LocalParameter
value: 1000.0

570581
type: LocalParameter
value: -1000.0

268022
type: SpeciesReference
stoichiometry: 1.0
species: 564366

268010
type: SpeciesReference
stoichiometry: 1.0
species: 564787

564787
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glutamate

268034
type: SpeciesReference
stoichiometry: 1.0
species: 564369

268046
type: SpeciesReference
stoichiometry: 1.0
species: 565126

565126
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate

568071
type: Reaction
kinetic law: 301751
product: 301739
reactant: 301727
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Glyoxylate[e] <=> Glyoxylate[p] Confidence Level: 2
fast: false
reversible: true
name: Glyoxylate transport via diffusion

573687
type: LocalParameter
value: 0.0

573685
type: LocalParameter
value: 0.0

573684
type: LocalParameter
value: 1000.0

573682
type: LocalParameter
value: -1000.0

301739
type: SpeciesReference
stoichiometry: 1.0
species: 566536

301727
type: SpeciesReference
stoichiometry: 1.0
species: 566537

566537
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glyoxylate[e]

567797
type: Reaction
kinetic law: 284367
fast: false
reactant: 284294
reversible: false
product: 284318
reactant: 284306
product: 284355
name: GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
notes: GPR_ASSOCIATION: RSP_0846 or RSP_0757 GENE_LIST: RSP_0846; RSP_0757; SUBSYSTEM: Riboflavin metabolism Equation: GTP + 3 H2O <=> Formate + 2,5-Diamino-6-(5'-phosphoribosylamino)-4-pyrimidineone + Diphosphate + H+ Confidence Level: 2
product: 284343
product: 284330

572174
type: LocalParameter
value: 0.0

572173
type: LocalParameter
value: 0.0

572171
type: LocalParameter
value: 1000.0

572170
type: LocalParameter
value: 0.0

284294
type: SpeciesReference
stoichiometry: 1.0
species: 564454

284318
type: SpeciesReference
stoichiometry: 1.0
species: 564484

284306
type: SpeciesReference
stoichiometry: 3.0
species: 564345

284355
type: SpeciesReference
stoichiometry: 1.0
species: 564535

284343
type: SpeciesReference
stoichiometry: 1.0
species: 564378

284330
type: SpeciesReference
stoichiometry: 1.0
species: 565349

566264
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: CO2[p]

566128
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Arginine[p]

567534
type: Reaction
fast: false
product: 266694
reactant: 266670
kinetic law: 266706
notes: GPR_ASSOCIATION: RSP_2956 or RSP_3268 GENE_LIST: RSP_2956; RSP_3268; SUBSYSTEM: Pentose phosphate pathway Equation: D-Fructose 6-phosphate + D-Glyceraldehyde 3-phosphate <=> D-Erythrose 4-phosphate + D-Xylulose 5-phosphate Confidence Level: 3
product: 266682
reversible: true
name: transketolase
reactant: 266658

266694
type: SpeciesReference
stoichiometry: 1.0
species: 564805

564805
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Xylulose5-phosphate

266670
type: SpeciesReference
stoichiometry: 1.0
species: 564619

570468
type: LocalParameter
value: 0.0

570466
type: LocalParameter
value: 0.0

570465
type: LocalParameter
value: 1000.0

570464
type: LocalParameter
value: -1000.0

266682
type: SpeciesReference
stoichiometry: 1.0
species: 564862

564862
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Erythrose4-phosphate

266658
type: SpeciesReference
stoichiometry: 1.0
species: 564547

566262
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Calcium[e]

566613
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Riboflavin[e]

567105
type: Reaction
kinetic law: 247056
product: 247044
reactant: 247032
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: glycerol[e] <=> Confidence Level:
fast: false
reversible: false
name: glycerol exchange

569084
type: LocalParameter
value: 0.0

569083
type: LocalParameter
value: 0.0

569082
type: LocalParameter
value: 1000.0

569081
type: LocalParameter
value: 0.0

247044
type: SpeciesReference
stoichiometry: 1.0
species: 566088

566088
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycerol[e]

247032
type: SpeciesReference
stoichiometry: 1.0
species: 566087

566087
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycerol[e]

568201
type: Reaction
kinetic law: 307788
product: 307776
reactant: 307764
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Ribitol[e] <=> Ribitol[p] Confidence Level: 2
fast: false
reversible: true
name: Ribitol transport via diffusion

574396
type: LocalParameter
value: 0.0

574394
type: LocalParameter
value: 0.0

574393
type: LocalParameter
value: 1000.0

574391
type: LocalParameter
value: -1000.0

307776
type: SpeciesReference
stoichiometry: 1.0
species: 566707

566707
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Ribitol[p]

307764
type: SpeciesReference
stoichiometry: 1.0
species: 566709

566709
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Ribitol[e]

566884
type: Reaction
product: 236535
notes: GPR_ASSOCIATION: RSP_0763 or RSP_3439 or RSP_2980 or RSP_3437 or RSP_1984 or RSP_2284 or RSP_0886 GENE_LIST: RSP_0763; RSP_3439; RSP_2980; RSP_3437; RSP_1984; RSP_2284; RSP_0886; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Tyrosine + 2-Oxoglutarate <=> 3-(4-Hydroxyphenyl)pyruvate + L-Glutamate Confidence Level: 2
reactant: 236511
product: 236547
fast: false
name: aspartate aminotransferase
reversible: true
kinetic law: 236559
reactant: 236523

236535
type: SpeciesReference
stoichiometry: 1.0
species: 565301

565301
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-(4-Hydroxyphenyl)pyruvate

236511
type: SpeciesReference
stoichiometry: 1.0
species: 564538

564538
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Tyrosine

236547
type: SpeciesReference
stoichiometry: 1.0
species: 564408

568415
type: LocalParameter
value: 0.0

568414
type: LocalParameter
value: 0.0

568413
type: LocalParameter
value: 1000.0

568412
type: LocalParameter
value: -1000.0

236523
type: SpeciesReference
stoichiometry: 1.0
species: 564411

564529
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Tryptophan

568120
type: Reaction
product: 303911
notes: GPR_ASSOCIATION: RSP_3174 GENE_LIST: RSP_3174; SUBSYSTEM: Transport, inner membrane Equation: Thymine[p] + Sodium[p] <=> Thymine + Sodium Confidence Level: 2
reactant: 303887
reversible: false
reactant: 303899
kinetic law: 303935
fast: false
product: 303923
name: Thymine via Na+ symport

303911
type: SpeciesReference
stoichiometry: 1.0
species: 564730

564730
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thymine

303887
type: SpeciesReference
stoichiometry: 1.0
species: 566604

566604
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Thymine[p]

303899
type: SpeciesReference
stoichiometry: 1.0
species: 566255

573956
type: LocalParameter
value: 0.0

573954
type: LocalParameter
value: 0.0

573953
type: LocalParameter
value: 1000.0

573951
type: LocalParameter
value: 0.0

303923
type: SpeciesReference
stoichiometry: 1.0
species: 566254

567393
type: Reaction
reversible: false
notes: GPR_ASSOCIATION: (RSP_1078 and RSP_1079 and RSP_1080 and RSP_1082) or (RSP_1078 and RSP_1079 and RSP_1082 and RSP_1821) GENE_LIST: RSP_1078; RSP_1079; RSP_1080; RSP_1082; RSP_1078; RSP_1079; RSP_1082; RSP_1821; SUBSYSTEM: Glyoxylate and dicarboxylate metabolism Equation: Formate + NAD+ <=> CO2 + NADH Confidence Level: 2
kinetic law: 259314
name: formate dehydrogenase
fast: false
product: 259301
product: 259289
reactant: 259265
reactant: 259278

569948
type: LocalParameter
value: 0.0

569946
type: LocalParameter
value: 0.0

569945
type: LocalParameter
value: 1000.0

569943
type: LocalParameter
value: 0.0

259301
type: SpeciesReference
stoichiometry: 1.0
species: 564354

259289
type: SpeciesReference
stoichiometry: 1.0
species: 564375

259265
type: SpeciesReference
stoichiometry: 1.0
species: 564484

259278
type: SpeciesReference
stoichiometry: 1.0
species: 564351

567996
type: Reaction
fast: false
product: 296944
kinetic law: 296968
reversible: true
name: branched-chain amino acid aminotransferase
product: 296956
reactant: 296920
reactant: 296932
notes: GPR_ASSOCIATION: RSP_1140 or RSP_2216 or RSP_1215 GENE_LIST: RSP_1140; RSP_2216; RSP_1215; SUBSYSTEM: Valine, leucine and isoleucine biosynthesis Equation: L-Leucine + 2-Oxoglutarate <=> 4-Methyl-2-oxopentanoate + L-Glutamate Confidence Level: 2

296944
type: SpeciesReference
stoichiometry: 1.0
species: 566462

566462
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Methyl-2-oxopentanoate

573274
type: LocalParameter
value: 0.0

573273
type: LocalParameter
value: 0.0

573271
type: LocalParameter
value: 1000.0

573270
type: LocalParameter
value: -1000.0

296956
type: SpeciesReference
stoichiometry: 1.0
species: 564408

296920
type: SpeciesReference
stoichiometry: 1.0
species: 564634

564634
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Leucine

296932
type: SpeciesReference
stoichiometry: 1.0
species: 564411

567846
type: Reaction
reactant: 287689
reversible: true
notes: GPR_ASSOCIATION: RSP_1786 and RSP_1788 GENE_LIST: RSP_1786; RSP_1788; SUBSYSTEM: Transport, inner membrane Equation: D-fructose[p] + Phosphoenolpyruvate <=> Fructose-1-phosphate + Pyruvate Confidence Level: 4
name: Fructose transport via PEP:Pyr PTS
product: 287713
product: 287701
fast: false
kinetic law: 287726
reactant: 287677

287689
type: SpeciesReference
stoichiometry: 1.0
species: 564520

287713
type: SpeciesReference
stoichiometry: 1.0
species: 564402

287701
type: SpeciesReference
stoichiometry: 1.0
species: 565271

565271
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Fructose1-phosphate

572442
type: LocalParameter
value: 0.0

572440
type: LocalParameter
value: 0.0

572439
type: LocalParameter
value: 1000.0

572437
type: LocalParameter
value: -1000.0

287677
type: SpeciesReference
stoichiometry: 1.0
species: 566099

566099
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Fructose[p]

566091
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Ribose[e]

567874
type: Reaction
fast: false
kinetic law: 290182
name: ABC ribose transporter
notes: GPR_ASSOCIATION: (RSP_6150 and RSP_1247 and RSP_1249) or (RSP_2365 and RSP_2367 and RSP_2366 and RSP_2368) or (RSP_3732 and RSP_3735 and RSP_3734 and RSP_3733) or (RSP_3687 and RSP_3689 and RSP_3688) GENE_LIST: RSP_6150; RSP_1247; RSP_1249; RSP_2365; RSP_2367; RSP_2366; RSP_2368; RSP_3732; RSP_3735; RSP_3734; RSP_3733; RSP_3687; RSP_3689; RSP_3688; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + ribose[p] <=> ADP + H+ + Orthophosphate + ribose Confidence Level: 2
reversible: false
product: 290146
reactant: 290098
reactant: 290122
product: 290158
product: 290134
reactant: 290110
product: 290170

572597
type: LocalParameter
value: 0.0

572596
type: LocalParameter
value: 0.0

572594
type: LocalParameter
value: 1000.0

572593
type: LocalParameter
value: 0.0

290146
type: SpeciesReference
stoichiometry: 1.0
species: 564535

290098
type: SpeciesReference
stoichiometry: 1.0
species: 564348

290122
type: SpeciesReference
stoichiometry: 1.0
species: 566090

566090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Ribose[p]

290158
type: SpeciesReference
stoichiometry: 1.0
species: 564369

290134
type: SpeciesReference
stoichiometry: 1.0
species: 564366

290110
type: SpeciesReference
stoichiometry: 1.0
species: 564345

290170
type: SpeciesReference
stoichiometry: 1.0
species: 564628

566975
type: Reaction
kinetic law: 241652
fast: false
name: N-acetyl-gamma-glutamyl-phosphate reductase
reactant: 241604
reactant: 241592
notes: GPR_ASSOCIATION: RSP_2946 GENE_LIST: RSP_2946; SUBSYSTEM: Arginine and proline metabolism Equation: N-Acetyl-L-glutamate 5-semialdehyde + Orthophosphate + NADP+ <=> N-Acetyl-L-glutamate 5-phosphate + NADPH + H+ Confidence Level: 2
product: 241628
reactant: 241580
reversible: true
product: 241616
product: 241640

568696
type: LocalParameter
value: 0.0

568695
type: LocalParameter
value: 0.0

568694
type: LocalParameter
value: 1000.0

568693
type: LocalParameter
value: -1000.0

241604
type: SpeciesReference
stoichiometry: 1.0
species: 564360

241592
type: SpeciesReference
stoichiometry: 1.0
species: 564369

241628
type: SpeciesReference
stoichiometry: 1.0
species: 564357

241580
type: SpeciesReference
stoichiometry: 1.0
species: 565328

565328
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N-Acetyl-L-glutamate5-semialdehyde

241616
type: SpeciesReference
stoichiometry: 1.0
species: 565643

241640
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567071
type: Reaction
kinetic law: 246151
product: 246139
reactant: 246127
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-valine[e] <=> Confidence Level:
fast: false
reversible: false
name: L-valine exchange

568982
type: LocalParameter
value: 0.0

568981
type: LocalParameter
value: 0.0

568980
type: LocalParameter
value: 1000.0

568979
type: LocalParameter
value: 0.0

246139
type: SpeciesReference
stoichiometry: 1.0
species: 566159

566159
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Valine[e]

246127
type: SpeciesReference
stoichiometry: 1.0
species: 566158

566158
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Valine[e]

567130
type: Reaction
kinetic law: 247721
product: 247708
reactant: 247695
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 2-Oxobutanoate[e] <=> Confidence Level:
fast: false
reversible: false
name: 2-Oxobutanoate exchange

569156
type: LocalParameter
value: 0.0

569155
type: LocalParameter
value: 0.0

569154
type: LocalParameter
value: 1000.0

569153
type: LocalParameter
value: 0.0

247708
type: SpeciesReference
stoichiometry: 1.0
species: 566295

247695
type: SpeciesReference
stoichiometry: 1.0
species: 566294

566294
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxobutanoate[e]

566598
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Potassium[e]

567003
type: Reaction
reactant: 243041
name: methoxyneurosporene dehydrogenase (hydroxyneurosporene desaturase)
notes: GPR_ASSOCIATION: RSP_0266 GENE_LIST: RSP_0266; SUBSYSTEM: Carotenoid biosynthesis Equation: Hydroxyneurosporene + FAD <=> Demethylspheroidene + FADH2 Confidence Level: 4
reactant: 243029
fast: false
reversible: true
product: 243065
kinetic law: 243077
product: 243053

243041
type: SpeciesReference
stoichiometry: 1.0
species: 564387

243029
type: SpeciesReference
stoichiometry: 1.0
species: 566402

243065
type: SpeciesReference
stoichiometry: 1.0
species: 566404

566404
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Demethylspheroidene

568780
type: LocalParameter
value: 0.0

568779
type: LocalParameter
value: 0.0

568778
type: LocalParameter
value: 1000.0

568777
type: LocalParameter
value: -1000.0

243053
type: SpeciesReference
stoichiometry: 1.0
species: 565352

567611
type: Reaction
kinetic law: 271478
product: 271466
product: 271454
reactant: 271442
notes: GPR_ASSOCIATION: RSP_6208 GENE_LIST: RSP_6208; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Hydroxymethylbilane <=> Uroporphyrinogen III + H2O Confidence Level: 2
fast: false
reversible: true
name: hypothetical protein

570842
type: LocalParameter
value: 0.0

570840
type: LocalParameter
value: 0.0

570839
type: LocalParameter
value: 1000.0

570838
type: LocalParameter
value: -1000.0

271466
type: SpeciesReference
stoichiometry: 1.0
species: 564345

271454
type: SpeciesReference
stoichiometry: 1.0
species: 565256

271442
type: SpeciesReference
stoichiometry: 1.0
species: 565244

565244
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydroxymethylbilane

568358
type: Reaction
kinetic law: 318365
product: 318341
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-CMP[p] + H+[p] <=> 3'-CMP + H+ Confidence Level: 1
fast: false
product: 318353
name: 3'-CMP transport via proton symport
reversible: true
reactant: 318329
reactant: 318316

575270
type: LocalParameter
value: 0.0

575269
type: LocalParameter
value: 0.0

575267
type: LocalParameter
value: 1000.0

575266
type: LocalParameter
value: -1000.0

318341
type: SpeciesReference
stoichiometry: 1.0
species: 566243

566243
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-CMP

318353
type: SpeciesReference
stoichiometry: 1.0
species: 564535

318329
type: SpeciesReference
stoichiometry: 1.0
species: 566248

318316
type: SpeciesReference
stoichiometry: 1.0
species: 566312

566312
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3'-CMP[p]

564604
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Glyceronephosphate

567941
type: Reaction
kinetic law: 294365
product: 294353
reactant: 294341
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: glycerol-3-phosphate[e] <=> glycerol-3-phosphate[p] Confidence Level: 2
fast: false
reversible: true
name: glycerol-3-phosphate transport via diffusion

572964
type: LocalParameter
value: 0.0

572963
type: LocalParameter
value: 0.0

572961
type: LocalParameter
value: 1000.0

572960
type: LocalParameter
value: -1000.0

294353
type: SpeciesReference
stoichiometry: 1.0
species: 566064

566064
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: glycerol-3-phosphate[p]

294341
type: SpeciesReference
stoichiometry: 1.0
species: 566065

566065
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: glycerol-3-phosphate[e]

566948
type: Reaction
fast: false
product: 240260
notes: GPR_ASSOCIATION: RSP_4041 GENE_LIST: RSP_4041; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Tyrosine + tRNA(Tyr) <=> AMP + Diphosphate + L-Tyrosyl-tRNA(Tyr) Confidence Level: 2
kinetic law: 240284
reactant: 240224
reactant: 240212
reactant: 240236
product: 240272
name: tyrosyl-tRNA synthetase
product: 240248
reversible: false

240260
type: SpeciesReference
stoichiometry: 1.0
species: 564378

568607
type: LocalParameter
value: 0.0

568606
type: LocalParameter
value: 0.0

568605
type: LocalParameter
value: 1000.0

568604
type: LocalParameter
value: 0.0

240224
type: SpeciesReference
stoichiometry: 1.0
species: 564538

240212
type: SpeciesReference
stoichiometry: 1.0
species: 564348

240236
type: SpeciesReference
stoichiometry: 1.0
species: 565141

565141
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Tyr)

240272
type: SpeciesReference
stoichiometry: 1.0
species: 565493

565493
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Tyrosyl-tRNA(Tyr)

240248
type: SpeciesReference
stoichiometry: 1.0
species: 564396

566580
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (R)-Malate[p]

565490
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2S,3S)-3-Hydroxy-2-methylbutanoyl-CoA

567498
type: Reaction
product: 264954
name: polyphosphate kinase
product: 264941
kinetic law: 264967
reversible: false
notes: GPR_ASSOCIATION: RSP_0781 GENE_LIST: RSP_0781; SUBSYSTEM: Oxidative phosphorylation Equation: ATP + orthophosphate <=> ADP + diphosphate Confidence Level: 2
reactant: 264916
fast: false
reactant: 264929

264954
type: SpeciesReference
stoichiometry: 1.0
species: 564378

264941
type: SpeciesReference
stoichiometry: 1.0
species: 564366

570332
type: LocalParameter
value: 0.0

570330
type: LocalParameter
value: 0.0

570329
type: LocalParameter
value: 1000.0

570328
type: LocalParameter
value: 0.0

264916
type: SpeciesReference
stoichiometry: 1.0
species: 564348

264929
type: SpeciesReference
stoichiometry: 1.0
species: 564369

564982
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Lactaldehyde

568187
type: Reaction
kinetic law: 307015
product: 307003
reactant: 306991
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 2',3'-Cyclic GMP[e] <=> Confidence Level:
fast: false
reversible: false
name: 2',3'-Cyclic GMP exchange

574319
type: LocalParameter
value: 0.0

574317
type: LocalParameter
value: 0.0

574316
type: LocalParameter
value: 1000.0

574314
type: LocalParameter
value: 0.0

307003
type: SpeciesReference
stoichiometry: 1.0
species: 566694

566694
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicGMP[e]

306991
type: SpeciesReference
stoichiometry: 1.0
species: 566693

566693
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicGMP[e]

568277
type: Reaction
product: 312771
product: 312783
reactant: 312735
fast: false
product: 312759
name: putative GTP cyclohydrolase
reversible: true
kinetic law: 312795
notes: GPR_ASSOCIATION: RSP_1852 GENE_LIST: RSP_1852; SUBSYSTEM: Folate biosynthesis Equation: Formamidopyrimidine nucleoside triphosphate + H2O <=> 2,5-Diaminopyrimidine nucleoside triphosphate + Formate + H+ Confidence Level: 1
reactant: 312747

312771
type: SpeciesReference
stoichiometry: 1.0
species: 564484

312783
type: SpeciesReference
stoichiometry: 1.0
species: 564535

312735
type: SpeciesReference
stoichiometry: 1.0
species: 566784

566784
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Formamidopyrimidinenucleosidetriphosphate

312759
type: SpeciesReference
stoichiometry: 1.0
species: 566786

574813
type: LocalParameter
value: 0.0

574812
type: LocalParameter
value: 0.0

574810
type: LocalParameter
value: 1000.0

574809
type: LocalParameter
value: -1000.0

312747
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567470
type: Reaction
kinetic law: 263215
product: 263203
product: 263191
reactant: 263179
notes: GPR_ASSOCIATION: RSP_3574 GENE_LIST: RSP_3574; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: L-Tyrosine <=> 4-Coumarate + NH3 Confidence Level: 3
fast: false
reversible: false
name: L-tyrosine ammonia-lyase

570227
type: LocalParameter
value: 0.0

570226
type: LocalParameter
value: 0.0

570225
type: LocalParameter
value: 1000.0

570224
type: LocalParameter
value: 0.0

263203
type: SpeciesReference
stoichiometry: 1.0
species: 564381

263191
type: SpeciesReference
stoichiometry: 1.0
species: 565177

263179
type: SpeciesReference
stoichiometry: 1.0
species: 564538

566437
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Decanoyl-[acp]

567733
type: Reaction
kinetic law: 280022
product: 280010
reactant: 279998
reactant: 279986
notes: GPR_ASSOCIATION: RSP_1736 or RSP_0578 GENE_LIST: RSP_1736; RSP_0578; SUBSYSTEM: Purine metabolism Equation: ATP + AMP <=> 2 ADP Confidence Level: 2
fast: false
reversible: false
name: adenylate kinase

571480
type: LocalParameter
value: 0.0

571479
type: LocalParameter
value: 0.0

571477
type: LocalParameter
value: 1000.0

571476
type: LocalParameter
value: 0.0

280010
type: SpeciesReference
stoichiometry: 2.0
species: 564366

279998
type: SpeciesReference
stoichiometry: 1.0
species: 564396

279986
type: SpeciesReference
stoichiometry: 1.0
species: 564348

566954
type: Reaction
kinetic law: 240551
name: urease
reactant: 240515
notes: GPR_ASSOCIATION: RSP_6111 and RSP_0308 and RSP_0309 GENE_LIST: RSP_6111; RSP_0308; RSP_0309; SUBSYSTEM: Arginine and proline metabolism Equation: Urea + H2O + 2 H+ <=> CO2 + 2 NH3 Confidence Level: 3
product: 240539
fast: false
reversible: false
reactant: 240490
product: 240527
reactant: 240503

568623
type: LocalParameter
value: 0.0

568622
type: LocalParameter
value: 0.0

568621
type: LocalParameter
value: 1000.0

568620
type: LocalParameter
value: 0.0

240515
type: SpeciesReference
stoichiometry: 2.0
species: 564535

240539
type: SpeciesReference
stoichiometry: 2.0
species: 564381

240490
type: SpeciesReference
stoichiometry: 1.0
species: 564550

240527
type: SpeciesReference
stoichiometry: 1.0
species: 564375

240503
type: SpeciesReference
stoichiometry: 1.0
species: 564345

568159
type: Reaction
product: 305651
kinetic law: 305699
reactant: 305627
product: 305675
product: 305663
fast: false
reactant: 305615
notes: GPR_ASSOCIATION: (RSP_3154 and RSP_3151 and RSP_3152 and RSP_3153) or (RSP_3154 and RSP_0180 and RSP_0181 and RSP_0179) GENE_LIST: RSP_3154; RSP_3151; RSP_3152; RSP_3153; RSP_3154; RSP_0180; RSP_0181; RSP_0179; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Nitrate[p] <=> ADP + H+ + Orthophosphate + Nitrate Confidence Level: 2
name: ABC Nitrate transporter
reactant: 305639
product: 305687
reversible: true

305651
type: SpeciesReference
stoichiometry: 1.0
species: 564366

574165
type: LocalParameter
value: 0.0

574163
type: LocalParameter
value: 0.0

574162
type: LocalParameter
value: 1000.0

574160
type: LocalParameter
value: -1000.0

305627
type: SpeciesReference
stoichiometry: 1.0
species: 564345

305675
type: SpeciesReference
stoichiometry: 1.0
species: 564369

305663
type: SpeciesReference
stoichiometry: 1.0
species: 564535

305615
type: SpeciesReference
stoichiometry: 1.0
species: 564348

305639
type: SpeciesReference
stoichiometry: 1.0
species: 566656

566656
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Nitrate[p]

305687
type: SpeciesReference
stoichiometry: 1.0
species: 565940

565940
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Nitrate

566906
type: Reaction
product: 237820
kinetic law: 237833
notes: GPR_ASSOCIATION: RSP_4003 or RSP_3740 or RSP_2372 or RSP_1507 or RSP_1292 GENE_LIST: RSP_4003; RSP_3740; RSP_2372; RSP_1507; RSP_1292; SUBSYSTEM: Glycolysis / Gluconeogenesis Equation: 4-Aminobutyraldehyde + NAD+ + H2O <=> 4-Aminobutanoate + NADH + 2 H+ Confidence Level: 2
fast: false
product: 237795
product: 237808
reactant: 237759
reactant: 237783
reactant: 237771
name: aldehyde dehydrogenase
reversible: true

237820
type: SpeciesReference
stoichiometry: 2.0
species: 564535

568479
type: LocalParameter
value: 0.0

568478
type: LocalParameter
value: 0.0

568477
type: LocalParameter
value: 1000.0

568476
type: LocalParameter
value: -1000.0

237795
type: SpeciesReference
stoichiometry: 1.0
species: 566222

566222
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Aminobutanoate

237808
type: SpeciesReference
stoichiometry: 1.0
species: 564354

237759
type: SpeciesReference
stoichiometry: 1.0
species: 566220

566220
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Aminobutyraldehyde

237783
type: SpeciesReference
stoichiometry: 1.0
species: 564345

237771
type: SpeciesReference
stoichiometry: 1.0
species: 564351

564796
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hexadecanoicacid

564916
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thioredoxindisulfide

566529
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Serine[e]

565439
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Arginyl-tRNA(Arg)

567676
type: Reaction
name: phosphoribosylaminoimidazole synthetase
reactant: 276218
reactant: 276206
product: 276242
product: 276266
reversible: false
product: 276230
fast: false
kinetic law: 276278
product: 276254
notes: GPR_ASSOCIATION: RSP_1969 GENE_LIST: RSP_1969; SUBSYSTEM: Purine metabolism Equation: ATP + 2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine <=> ADP + Orthophosphate + Aminoimidazole ribotide + 2H+ Confidence Level: 2

276218
type: SpeciesReference
stoichiometry: 1.0
species: 565718

565718
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine

276206
type: SpeciesReference
stoichiometry: 1.0
species: 564348

276242
type: SpeciesReference
stoichiometry: 1.0
species: 564369

276266
type: SpeciesReference
stoichiometry: 2.0
species: 564535

276230
type: SpeciesReference
stoichiometry: 1.0
species: 564366

571181
type: LocalParameter
value: 0.0

571179
type: LocalParameter
value: 0.0

571178
type: LocalParameter
value: 1000.0

571177
type: LocalParameter
value: 0.0

276254
type: SpeciesReference
stoichiometry: 1.0
species: 565553

567705
type: Reaction
kinetic law: 278070
fast: false
reversible: true
reactant: 278033
product: 278058
name: hypoxanthine phosphoribosyltransferase
reactant: 278021
product: 278045
notes: GPR_ASSOCIATION: RSP_2786 GENE_LIST: RSP_2786; SUBSYSTEM: Purine metabolism Equation: IMP + Diphosphate <=> Hypoxanthine + 5-Phospho-alpha-D-ribose Confidence Level: 2

571340
type: LocalParameter
value: 0.0

571339
type: LocalParameter
value: 0.0

571337
type: LocalParameter
value: 1000.0

571336
type: LocalParameter
value: -1000.0

278033
type: SpeciesReference
stoichiometry: 1.0
species: 564378

278058
type: SpeciesReference
stoichiometry: 1.0
species: 564622

278021
type: SpeciesReference
stoichiometry: 1.0
species: 564649

278045
type: SpeciesReference
stoichiometry: 1.0
species: 564844

565883
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Apoprotein

566377
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ethanolamine

565466
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Hydroxy-5-methylhex-4-enoyl-CoA

566645
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hydrogen[e]

564913
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thioredoxin

567961
type: Reaction
kinetic law: 295095
product: 295083
reactant: 295071
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Malate[e] <=> Malate[p] Confidence Level: 2
fast: false
reversible: true
name: Malate transport via diffusion

573078
type: LocalParameter
value: 0.0

573076
type: LocalParameter
value: 0.0

573075
type: LocalParameter
value: 1000.0

573073
type: LocalParameter
value: -1000.0

295083
type: SpeciesReference
stoichiometry: 1.0
species: 566279

295071
type: SpeciesReference
stoichiometry: 1.0
species: 566280

566280
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (S)-Malate[e]

566755
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3-Phospho-D-glycerate[e]

566191
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Zinc

567886
type: Reaction
fast: false
product: 291247
reactant: 291223
product: 291271
reactant: 291235
product: 291283
reversible: false
notes: GPR_ASSOCIATION: (RSP_3968 and RSP_3967 and RSP_3966 and RSP_3964) or (RSP_3968 and RSP_3967 and RSP_3966 and RSP_3965) or (RSP_3297 and RSP_3294 and RSP_3293 and RSP_3295) or (RSP_3297 and RSP_3294 and RSP_3293 and RSP_3296) or (RSP_2923 and RSP_2926 and RSP_2927 and RSP_2925) or (RSP_2923 and RSP_2926 and RSP_2927 and RSP_2924) or (RSP_2275 and RSP_2277 and RSP_2276 and RSP_2274) or (RSP_2275 and RSP_2277 and RSP_2276 and RSP_2278) or (RSP_1290 and RSP_1291 and RSP_1289 and RSP_1287) or (RSP_1290 and RSP_1291 and RSP_1289 and RSP_1288) or (RSP_0301 and RSP_0300 and RSP_0299 and RSP_0297) or (RSP_0301 and RSP_0300 and RSP_0299 and RSP_0298) GENE_LIST: RSP_3968; RSP_3967; RSP_3966; RSP_3964; RSP_3968; RSP_3967; RSP_3966; RSP_3965; RSP_3297; RSP_3294; RSP_3293; RSP_3295; RSP_3297; RSP_3294; RSP_3293; RSP_3296; RSP_2923; RSP_2926; RSP_2927; RSP_2925; RSP_2923; RSP_2926; RSP_2927; RSP_2924; RSP_2275; RSP_2277; RSP_2276; RSP_2274; RSP_2275; RSP_2277; RSP_2276; RSP_2278; RSP_1290; RSP_1291; RSP_1289; RSP_1287; RSP_1290; RSP_1291; RSP_1289; RSP_1288; RSP_0301; RSP_0300; RSP_0299; RSP_0297; RSP_0301; RSP_0300; RSP_0299; RSP_0298; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + L-leucine[p] <=> ADP + H+ + Orthophosphate + L-leucine Confidence Level: 2
product: 291259
reactant: 291211
kinetic law: 291295
name: ABC L-leucine transporter

291247
type: SpeciesReference
stoichiometry: 1.0
species: 564366

291223
type: SpeciesReference
stoichiometry: 1.0
species: 564345

291271
type: SpeciesReference
stoichiometry: 1.0
species: 564369

291235
type: SpeciesReference
stoichiometry: 1.0
species: 566148

291283
type: SpeciesReference
stoichiometry: 1.0
species: 564634

291259
type: SpeciesReference
stoichiometry: 1.0
species: 564535

291211
type: SpeciesReference
stoichiometry: 1.0
species: 564348

572663
type: LocalParameter
value: 0.0

572661
type: LocalParameter
value: 0.0

572660
type: LocalParameter
value: 1000.0

572658
type: LocalParameter
value: 0.0

566413
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Cystathionine

566672
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Cysteate[p]

567550
type: Reaction
kinetic law: 267410
product: 267398
reactant: 267385
notes: GPR_ASSOCIATION: RSP_1596 or RSP_2883 GENE_LIST: RSP_1596; RSP_2883; SUBSYSTEM: Pentose phosphate pathway Equation: alpha-D-Ribose 1-phosphate <=> D-Ribose 5-phosphate Confidence Level: 2
fast: false
reversible: true
name: phosphopentomutase

570534
type: LocalParameter
value: 0.0

570532
type: LocalParameter
value: 0.0

570531
type: LocalParameter
value: 1000.0

570530
type: LocalParameter
value: -1000.0

267398
type: SpeciesReference
stoichiometry: 1.0
species: 564616

564616
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Ribose5-phosphate

267385
type: SpeciesReference
stoichiometry: 1.0
species: 565069

568079
type: Reaction
kinetic law: 302126
product: 302114
reactant: 302102
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-Ornithine[e] <=> Confidence Level:
fast: false
reversible: false
name: L-Ornithine exchange

573730
type: LocalParameter
value: 0.0

573729
type: LocalParameter
value: 0.0

573727
type: LocalParameter
value: 1000.0

573726
type: LocalParameter
value: 0.0

302114
type: SpeciesReference
stoichiometry: 1.0
species: 566550

566550
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Ornithine[e]

302102
type: SpeciesReference
stoichiometry: 1.0
species: 566549

566549
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Ornithine[e]

564556
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sucrose

566076
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Sucrose[p]

568046
type: Reaction
product: 300363
product: 300339
reversible: false
reactant: 300314
product: 300351
kinetic law: 300375
fast: false
reactant: 300326
notes: GPR_ASSOCIATION: RSP_2917 GENE_LIST: RSP_2917; SUBSYSTEM: Cysteine and methionine metabolism Equation: L-Cystathionine + H2O <=> 2-Oxobutanoate + L-Cysteine + NH3 Confidence Level: 2
name: cystathionine gamma-synthase

300363
type: SpeciesReference
stoichiometry: 1.0
species: 564381

300339
type: SpeciesReference
stoichiometry: 1.0
species: 564601

300314
type: SpeciesReference
stoichiometry: 1.0
species: 566413

300351
type: SpeciesReference
stoichiometry: 1.0
species: 564577

573549
type: LocalParameter
value: 0.0

573548
type: LocalParameter
value: 0.0

573546
type: LocalParameter
value: 1000.0

573545
type: LocalParameter
value: 0.0

300326
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567089
type: Reaction
kinetic law: 246624
product: 246612
reactant: 246600
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: sulfate[e] <=> Confidence Level:
fast: false
reversible: false
name: sulfate exchange

569035
type: LocalParameter
value: 0.0

569034
type: LocalParameter
value: 0.0

569033
type: LocalParameter
value: 1000.0

569032
type: LocalParameter
value: 0.0

246612
type: SpeciesReference
stoichiometry: 1.0
species: 566023

566023
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: sulfate[e]

246600
type: SpeciesReference
stoichiometry: 1.0
species: 566022

566022
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: sulfate[e]

567892
type: Reaction
kinetic law: 291887
notes: GPR_ASSOCIATION: (RSP_3030 and RSP_3031 and RSP_3033 and RSP_3034) or (RSP_3032 and RSP_3030 and RSP_3031 and RSP_3034) GENE_LIST: RSP_3030; RSP_3031; RSP_3033; RSP_3034; RSP_3032; RSP_3030; RSP_3031; RSP_3034; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Glutathione disulfide[p] <=> ADP + H+ + Orthophosphate + Glutathione disulfide Confidence Level: 2
reversible: false
product: 291863
product: 291839
reactant: 291827
product: 291875
reactant: 291815
fast: false
name: ABC Glutathione disulfide (oxidized) transporter
reactant: 291803
product: 291851

572696
type: LocalParameter
value: 0.0

572694
type: LocalParameter
value: 0.0

572693
type: LocalParameter
value: 1000.0

572691
type: LocalParameter
value: 0.0

291863
type: SpeciesReference
stoichiometry: 1.0
species: 564369

291839
type: SpeciesReference
stoichiometry: 1.0
species: 564366

291827
type: SpeciesReference
stoichiometry: 1.0
species: 566178

291875
type: SpeciesReference
stoichiometry: 1.0
species: 564643

291815
type: SpeciesReference
stoichiometry: 1.0
species: 564345

291803
type: SpeciesReference
stoichiometry: 1.0
species: 564348

291851
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567509
type: Reaction
product: 265546
kinetic law: 265558
reactant: 265474
fast: false
product: 265510
notes: GPR_ASSOCIATION: RSP_0599 GENE_LIST: RSP_0599; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + D-4'-Phosphopantothenate + L-Cysteine <=> AMP + Diphosphate + (R)-4'-Phosphopantothenoyl-L-cystein +H+ Confidence Level: 2
product: 265522
name: bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
reversible: true
reactant: 265486
reactant: 265498
product: 265534

265546
type: SpeciesReference
stoichiometry: 1.0
species: 564535

570371
type: LocalParameter
value: 0.0

570369
type: LocalParameter
value: 0.0

570368
type: LocalParameter
value: 1000.0

570367
type: LocalParameter
value: -1000.0

265474
type: SpeciesReference
stoichiometry: 1.0
species: 564348

265510
type: SpeciesReference
stoichiometry: 1.0
species: 564396

265522
type: SpeciesReference
stoichiometry: 1.0
species: 564378

265486
type: SpeciesReference
stoichiometry: 1.0
species: 566005

566005
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-4'-Phosphopantothenate

265498
type: SpeciesReference
stoichiometry: 1.0
species: 564577

265534
type: SpeciesReference
stoichiometry: 1.0
species: 565673

565673
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-4'-Phosphopantothenoyl-L-cysteine

568237
type: Reaction
reactant: 309535
product: 309547
reversible: true
kinetic law: 309572
reactant: 309523
product: 309559
fast: false
reactant: 309511
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Purine metabolism Equation: Urate + Oxygen + H2O <=> 5-Hydroxyisourate + H2O2 Confidence Level: 1

309535
type: SpeciesReference
stoichiometry: 1.0
species: 564345

309547
type: SpeciesReference
stoichiometry: 1.0
species: 565862

574593
type: LocalParameter
value: 0.0

574592
type: LocalParameter
value: 0.0

574590
type: LocalParameter
value: 1000.0

574589
type: LocalParameter
value: -1000.0

309523
type: SpeciesReference
stoichiometry: 1.0
species: 564363

309559
type: SpeciesReference
stoichiometry: 1.0
species: 564418

309511
type: SpeciesReference
stoichiometry: 1.0
species: 565967

565967
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Urate

565541
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamyl5-phosphate

568289
type: Reaction
fast: false
notes: GPR_ASSOCIATION: RSP_1041 GENE_LIST: RSP_1041; SUBSYSTEM: Glycerophospholipid metabolism Equation: ATP + (11E)-Octadecenoic acid + CoA <=> AMP + Diphosphate + Acyl-CoA Confidence Level: 1
product: 313687
reactant: 313638
reactant: 313662
kinetic law: 313711
product: 313674
reversible: false
reactant: 313650
product: 313699

313687
type: SpeciesReference
stoichiometry: 1.0
species: 564396

313638
type: SpeciesReference
stoichiometry: 1.0
species: 564348

313662
type: SpeciesReference
stoichiometry: 1.0
species: 564372

574879
type: LocalParameter
value: 0.0

574878
type: LocalParameter
value: 0.0

574876
type: LocalParameter
value: 1000.0

574875
type: LocalParameter
value: 0.0

313674
type: SpeciesReference
stoichiometry: 1.0
species: 564378

313650
type: SpeciesReference
stoichiometry: 1.0
species: 566791

566791
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (11E)-Octadecenoicacid

313699
type: SpeciesReference
stoichiometry: 1.0
species: 564442

568080
type: Reaction
kinetic law: 302162
product: 302150
reactant: 302138
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-Ornithine[e] <=> L-Ornithine[p] Confidence Level: 2
fast: false
reversible: true
name: L-Ornithine transport via diffusion

573736
type: LocalParameter
value: 0.0

573734
type: LocalParameter
value: 0.0

573733
type: LocalParameter
value: 1000.0

573731
type: LocalParameter
value: -1000.0

302150
type: SpeciesReference
stoichiometry: 1.0
species: 566548

566548
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Ornithine[p]

302138
type: SpeciesReference
stoichiometry: 1.0
species: 566549

567910
type: Reaction
kinetic law: 293241
product: 293229
reactant: 293217
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-arginine[e] <=> L-arginine[p] Confidence Level: 2
fast: false
reversible: true
name: arginine transport via diffusion

572794
type: LocalParameter
value: 0.0

572793
type: LocalParameter
value: 0.0

572791
type: LocalParameter
value: 1000.0

572790
type: LocalParameter
value: -1000.0

293229
type: SpeciesReference
stoichiometry: 1.0
species: 566128

293217
type: SpeciesReference
stoichiometry: 1.0
species: 566130

566489
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Arabinose

567835
type: Reaction
name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
reactant: 286876
fast: false
notes: GPR_ASSOCIATION: RSP_6071 GENE_LIST: RSP_6071; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol <=> 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate + CMP + H+ Confidence Level: 2
product: 286901
product: 286889
product: 286914
reversible: true
kinetic law: 286926

286876
type: SpeciesReference
stoichiometry: 1.0
species: 565856

286901
type: SpeciesReference
stoichiometry: 1.0
species: 564481

286889
type: SpeciesReference
stoichiometry: 1.0
species: 565979

565979
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-C-Methyl-D-erythritol2,4-cyclodiphosphate

286914
type: SpeciesReference
stoichiometry: 1.0
species: 564535

572382
type: LocalParameter
value: 0.0

572380
type: LocalParameter
value: 0.0

572379
type: LocalParameter
value: 1000.0

572377
type: LocalParameter
value: -1000.0

567406
type: Reaction
kinetic law: 259918
product: 259906
product: 259894
reactant: 259882
notes: GPR_ASSOCIATION: RSP_2935 GENE_LIST: RSP_2935; SUBSYSTEM: Histidine metabolism Equation: L-Histidine <=> Urocanate + NH3 Confidence Level: 2
fast: false
reversible: false
name: histidine ammonia-lyase

569997
type: LocalParameter
value: 0.0

569996
type: LocalParameter
value: 0.0

569995
type: LocalParameter
value: 1000.0

569993
type: LocalParameter
value: 0.0

259906
type: SpeciesReference
stoichiometry: 1.0
species: 564381

259894
type: SpeciesReference
stoichiometry: 1.0
species: 565138

259882
type: SpeciesReference
stoichiometry: 1.0
species: 564664

567773
type: Reaction
fast: false
name: cytosine deaminase
notes: GPR_ASSOCIATION: RSP_0341 GENE_LIST: RSP_0341; SUBSYSTEM: Pyrimidine metabolism Equation: 5-Methylcytosine + H2O + H+ <=> Thymine + NH3 Confidence Level: 2
kinetic law: 282619
product: 282607
reversible: false
reactant: 282583
product: 282595
reactant: 282559
reactant: 282571

571680
type: LocalParameter
value: 0.0

571679
type: LocalParameter
value: 0.0

571677
type: LocalParameter
value: 1000.0

571676
type: LocalParameter
value: 0.0

282607
type: SpeciesReference
stoichiometry: 1.0
species: 564381

282583
type: SpeciesReference
stoichiometry: 1.0
species: 564535

282595
type: SpeciesReference
stoichiometry: 1.0
species: 564730

282559
type: SpeciesReference
stoichiometry: 1.0
species: 565793

282571
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567434
type: Reaction
reactant: 261357
product: 261381
product: 261406
reactant: 261369
kinetic law: 261418
reversible: true
product: 261394
notes: GPR_ASSOCIATION: RSP_1376 GENE_LIST: RSP_1376; SUBSYSTEM: Lysine biosynthesis Equation: L-Aspartate 4-semialdehyde + Orthophosphate + NADP+ <=> 4-Phospho-L-aspartate + NADPH + H+ Confidence Level: 2
reactant: 261345
fast: false
name: aspartate-semialdehyde dehydrogenase

261357
type: SpeciesReference
stoichiometry: 1.0
species: 564369

261381
type: SpeciesReference
stoichiometry: 1.0
species: 565514

261406
type: SpeciesReference
stoichiometry: 1.0
species: 564535

261369
type: SpeciesReference
stoichiometry: 1.0
species: 564360

570102
type: LocalParameter
value: 0.0

570101
type: LocalParameter
value: 0.0

570100
type: LocalParameter
value: 1000.0

570098
type: LocalParameter
value: -1000.0

261394
type: SpeciesReference
stoichiometry: 1.0
species: 564357

261345
type: SpeciesReference
stoichiometry: 1.0
species: 565003

566994
type: Reaction
product: 242589
reactant: 242565
name: farnesyl-diphosphate synthase
reversible: false
kinetic law: 242602
product: 242577
notes: GPR_ASSOCIATION: RSP_0265 or RSP_1135 GENE_LIST: RSP_0265; RSP_1135; SUBSYSTEM: Carotenoid biosynthesis Equation: Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate Confidence Level: 4
reactant: 242553
fast: false

242589
type: SpeciesReference
stoichiometry: 1.0
species: 564910

564910
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Geranyldiphosphate

242565
type: SpeciesReference
stoichiometry: 1.0
species: 564646

564646
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Isopentenyldiphosphate

568752
type: LocalParameter
value: 0.0

568751
type: LocalParameter
value: 0.0

568750
type: LocalParameter
value: 1000.0

568749
type: LocalParameter
value: 0.0

242577
type: SpeciesReference
stoichiometry: 1.0
species: 564378

242553
type: SpeciesReference
stoichiometry: 1.0
species: 564814

564814
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dimethylallyldiphosphate

567863
type: Reaction
kinetic law: 289188
name: Succinate transport via Na+ symport
fast: false
reactant: 289139
product: 289163
reactant: 289151
notes: GPR_ASSOCIATION: RSP_0910 and RSP_0911 and RSP_0912 GENE_LIST: RSP_0910; RSP_0911; RSP_0912; SUBSYSTEM: Transport, inner membrane Equation: Succinate[p] + 2 Sodium[p] <=> Succinate + 2 Sodium Confidence Level: 3
reversible: false
product: 289175

572535
type: LocalParameter
value: 0.0

572534
type: LocalParameter
value: 0.0

572532
type: LocalParameter
value: 1000.0

572531
type: LocalParameter
value: 0.0

289139
type: SpeciesReference
stoichiometry: 1.0
species: 566272

566272
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Succinate[p]

289163
type: SpeciesReference
stoichiometry: 1.0
species: 564448

564448
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Succinate

289151
type: SpeciesReference
stoichiometry: 2.0
species: 566255

289175
type: SpeciesReference
stoichiometry: 2.0
species: 566254

566964
type: Reaction
kinetic law: 241108
reactant: 241072
reversible: false
reactant: 241060
fast: false
name: gamma-glutamyl kinase
notes: GPR_ASSOCIATION: RSP_3823 GENE_LIST: RSP_3823; SUBSYSTEM: Arginine and proline metabolism Equation: ATP + L-Glutamate <=> ADP + L-Glutamyl 5-phosphate Confidence Level: 2
product: 241084
product: 241096

568664
type: LocalParameter
value: 0.0

568663
type: LocalParameter
value: 0.0

568662
type: LocalParameter
value: 1000.0

568661
type: LocalParameter
value: 0.0

241072
type: SpeciesReference
stoichiometry: 1.0
species: 564408

241060
type: SpeciesReference
stoichiometry: 1.0
species: 564348

241084
type: SpeciesReference
stoichiometry: 1.0
species: 564366

241096
type: SpeciesReference
stoichiometry: 1.0
species: 565541

566469
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-2,3-Dihydroxy-3-methylbutanoate

566422
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxooctanoyl-[acp]

568295
type: Reaction
product: 314230
product: 314218
reactant: 314182
reactant: 314194
kinetic law: 314242
notes: GPR_ASSOCIATION: s0001 GENE_LIST: SUBSYSTEM: Purine metabolism Equation: GTP + H+ + H2O <=> NH3 + XTP Confidence Level: 4
reactant: 314206
fast: false
reversible: false

314230
type: SpeciesReference
stoichiometry: 1.0
species: 566446

314218
type: SpeciesReference
stoichiometry: 1.0
species: 564381

314182
type: SpeciesReference
stoichiometry: 1.0
species: 564454

314194
type: SpeciesReference
stoichiometry: 1.0
species: 564535

574912
type: LocalParameter
value: 0.0

574911
type: LocalParameter
value: 0.0

574909
type: LocalParameter
value: 1000.0

574908
type: LocalParameter
value: 0.0

314206
type: SpeciesReference
stoichiometry: 1.0
species: 564345

568300
type: Reaction
kinetic law: 314473
product: 314461
reactant: 314448
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 5'-Methylthioadenosine[e] <=> Confidence Level:
fast: false
reversible: false
name: 5'-Methylthioadenosine exchange

574951
type: LocalParameter
value: 0.0

574950
type: LocalParameter
value: 0.0

574948
type: LocalParameter
value: 1000.0

574947
type: LocalParameter
value: 0.0

314461
type: SpeciesReference
stoichiometry: 1.0
species: 566805

566805
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5'-Methylthioadenosine[e]

314448
type: SpeciesReference
stoichiometry: 1.0
species: 566804

566804
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5'-Methylthioadenosine[e]

566922
type: Reaction
product: 238547
reactant: 238487
reactant: 238499
kinetic law: 238559
reactant: 238511
name: UDP-glucose 6-dehydrogenase
reversible: true
fast: false
product: 238535
notes: GPR_ASSOCIATION: RSP_0653 GENE_LIST: RSP_0653; SUBSYSTEM: Amino sugar and nucleotide sugar metabolism Equation: UDP-glucose + H2O + 2 NAD+ <=> UDP-glucuronate + 2 NADH + 3 H+ Confidence Level: 2
product: 238523

238547
type: SpeciesReference
stoichiometry: 3.0
species: 564535

238487
type: SpeciesReference
stoichiometry: 1.0
species: 564421

564421
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-glucose

238499
type: SpeciesReference
stoichiometry: 1.0
species: 564345

568527
type: LocalParameter
value: 0.0

568526
type: LocalParameter
value: 0.0

568525
type: LocalParameter
value: 1000.0

568524
type: LocalParameter
value: -1000.0

238511
type: SpeciesReference
stoichiometry: 2.0
species: 564351

238535
type: SpeciesReference
stoichiometry: 2.0
species: 564354

238523
type: SpeciesReference
stoichiometry: 1.0
species: 564712

564712
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-glucuronate

566007
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Glutamyl-tRNA(Gln)

565925
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Lipoyl-[acp]

567166
type: Reaction
kinetic law: 249242
reactant: 249194
product: 249230
product: 249218
reactant: 249206
reversible: true
fast: false
notes: GPR_ASSOCIATION: RSP_1679 GENE_LIST: RSP_1679; SUBSYSTEM: Fatty acid biosynthesis Equation: Octanoyl-CoA + FAD <=> trans-Oct-2-enoyl-CoA + FADH2 Confidence Level: 2
name: Acyl-CoA dehydrogenase

569264
type: LocalParameter
value: 0.0

569263
type: LocalParameter
value: 0.0

569262
type: LocalParameter
value: 1000.0

569261
type: LocalParameter
value: -1000.0

249194
type: SpeciesReference
stoichiometry: 1.0
species: 566360

566360
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Octanoyl-CoA

249230
type: SpeciesReference
stoichiometry: 1.0
species: 565352

249218
type: SpeciesReference
stoichiometry: 1.0
species: 566362

249206
type: SpeciesReference
stoichiometry: 1.0
species: 564387

566052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-proline[p]

568038
type: Reaction
reactant: 299832
notes: GPR_ASSOCIATION: RSP_0885 GENE_LIST: RSP_0885; SUBSYSTEM: Cysteine and methionine metabolism Equation: Mercaptopyruvate + Sulfite <=> Thiosulfate + Pyruvate Confidence Level: 2
reversible: true
fast: false
name: thiosulfate sulfurtransferase, rhodanese-like
kinetic law: 299880
product: 299856
product: 299868
reactant: 299844

299832
type: SpeciesReference
stoichiometry: 1.0
species: 566214

573505
type: LocalParameter
value: 0.0

573504
type: LocalParameter
value: 0.0

573502
type: LocalParameter
value: 1000.0

573501
type: LocalParameter
value: -1000.0

299856
type: SpeciesReference
stoichiometry: 1.0
species: 566009

566009
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Thiosulfate

299868
type: SpeciesReference
stoichiometry: 1.0
species: 564402

299844
type: SpeciesReference
stoichiometry: 1.0
species: 564568

564592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UMP

568366
type: Reaction
kinetic law: 318777
product: 318765
reactant: 318752
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Sulfite[e] <=> Sulfite[p] Confidence Level: 2
fast: false
reversible: true
name: Sulfite transport via diffusion

575314
type: LocalParameter
value: 0.0

575313
type: LocalParameter
value: 0.0

575311
type: LocalParameter
value: 1000.0

575310
type: LocalParameter
value: -1000.0

318765
type: SpeciesReference
stoichiometry: 1.0
species: 566864

318752
type: SpeciesReference
stoichiometry: 1.0
species: 566866

566866
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sulfite[e]

567487
type: Reaction
product: 264311
fast: false
name: cyclohexadienyl dehydrogenase
reversible: false
kinetic law: 264348
reactant: 264287
notes: GPR_ASSOCIATION: RSP_6215 GENE_LIST: RSP_6215; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: Prephenate + NAD+ <=> 3-(4-Hydroxyphenyl)pyruvate + CO2 + NADH Confidence Level: 2
reactant: 264299
product: 264323
product: 264335

264311
type: SpeciesReference
stoichiometry: 1.0
species: 565301

570293
type: LocalParameter
value: 0.0

570292
type: LocalParameter
value: 0.0

570291
type: LocalParameter
value: 1000.0

570290
type: LocalParameter
value: 0.0

264287
type: SpeciesReference
stoichiometry: 1.0
species: 564832

264299
type: SpeciesReference
stoichiometry: 1.0
species: 564351

264323
type: SpeciesReference
stoichiometry: 1.0
species: 564375

264335
type: SpeciesReference
stoichiometry: 1.0
species: 564354

568176
type: Reaction
kinetic law: 306521
product: 306508
reactant: 306496
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: D-Aspartate[e] <=> D-Aspartate[p] Confidence Level: 2
fast: false
reversible: true
name: D-Aspartate transport via diffusion

574258
type: LocalParameter
value: 0.0

574257
type: LocalParameter
value: 0.0

574255
type: LocalParameter
value: 1000.0

574254
type: LocalParameter
value: -1000.0

306508
type: SpeciesReference
stoichiometry: 1.0
species: 566676

306496
type: SpeciesReference
stoichiometry: 1.0
species: 566677

566677
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Aspartate[e]

568266
type: Reaction
reversible: false
product: 312288
product: 312251
reactant: 312227
kinetic law: 312300
product: 312276
name: ABC Nicotinate transporter
product: 312264
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Nicotinate[p] <=> ADP + H+ + Orthophosphate + Nicotinate Confidence Level: 1
reactant: 312215
reactant: 312239
fast: false

312288
type: SpeciesReference
stoichiometry: 1.0
species: 564829

564829
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Nicotinate

312251
type: SpeciesReference
stoichiometry: 1.0
species: 564366

312227
type: SpeciesReference
stoichiometry: 1.0
species: 564345

574753
type: LocalParameter
value: 0.0

574751
type: LocalParameter
value: 0.0

574750
type: LocalParameter
value: 1000.0

574748
type: LocalParameter
value: 0.0

312276
type: SpeciesReference
stoichiometry: 1.0
species: 564369

312264
type: SpeciesReference
stoichiometry: 1.0
species: 564535

312215
type: SpeciesReference
stoichiometry: 1.0
species: 564348

312239
type: SpeciesReference
stoichiometry: 1.0
species: 566770

566770
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Nicotinate[p]

565406
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Ser)

567722
type: Reaction
fast: false
kinetic law: 279270
reactant: 279209
reactant: 279221
reactant: 279233
name: ribonucleotide-diphosphate reductase
product: 279258
product: 279245
notes: GPR_ASSOCIATION: RSP_2495 or RSP_3547 GENE_LIST: RSP_2495; RSP_3547; SUBSYSTEM: Purine metabolism Equation: dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin Confidence Level: 2
reversible: true

571425
type: LocalParameter
value: 0.0

571424
type: LocalParameter
value: 0.0

571422
type: LocalParameter
value: 1000.0

571421
type: LocalParameter
value: -1000.0

279209
type: SpeciesReference
stoichiometry: 1.0
species: 565968

279221
type: SpeciesReference
stoichiometry: 1.0
species: 564916

279233
type: SpeciesReference
stoichiometry: 1.0
species: 564345

279258
type: SpeciesReference
stoichiometry: 1.0
species: 564913

279245
type: SpeciesReference
stoichiometry: 1.0
species: 564430

564430
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: GDP

565484
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1-(5-Phospho-D-ribosyl)-ATP

567765
type: Reaction
reactant: 282002
notes: GPR_ASSOCIATION: RSP_2705 or RSP_3591 GENE_LIST: RSP_2705; RSP_3591; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + UMP <=> ADP + UDP Confidence Level: 2
fast: false
kinetic law: 282050
product: 282038
name: uridylate kinase
product: 282026
reactant: 282014
reversible: true

282002
type: SpeciesReference
stoichiometry: 1.0
species: 564348

571640
type: LocalParameter
value: 0.0

571639
type: LocalParameter
value: 0.0

571637
type: LocalParameter
value: 1000.0

571636
type: LocalParameter
value: -1000.0

282038
type: SpeciesReference
stoichiometry: 1.0
species: 564384

282026
type: SpeciesReference
stoichiometry: 1.0
species: 564366

282014
type: SpeciesReference
stoichiometry: 1.0
species: 564592

566263
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Calcium[e]

567575
type: Reaction
notes: GPR_ASSOCIATION: RSP_2910 GENE_LIST: RSP_2910; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: Hippurate + H2O <=> Benzoate + Glycine Confidence Level: 2
reactant: 269059
reversible: true
product: 269095
fast: false
kinetic law: 269107
product: 269083
name: metal-dependent amidase/aminoacylase/carboxypeptidase
reactant: 269071

269059
type: SpeciesReference
stoichiometry: 1.0
species: 565364

269095
type: SpeciesReference
stoichiometry: 1.0
species: 564436

570656
type: LocalParameter
value: 0.0

570654
type: LocalParameter
value: 0.0

570653
type: LocalParameter
value: 1000.0

570652
type: LocalParameter
value: -1000.0

269083
type: SpeciesReference
stoichiometry: 1.0
species: 564736

564736
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Benzoate

269071
type: SpeciesReference
stoichiometry: 1.0
species: 564345

564790
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Nickel

567580
type: Reaction
reversible: true
notes: GPR_ASSOCIATION: RSP_2817 GENE_LIST: RSP_2817; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: ATP + Shikimate <=> ADP + Shikimate 3-phosphate + H+ Confidence Level: 2
kinetic law: 269421
reactant: 269361
name: shikimate kinase
fast: false
product: 269409
product: 269385
product: 269397
reactant: 269373

570682
type: LocalParameter
value: 0.0

570680
type: LocalParameter
value: 0.0

570679
type: LocalParameter
value: 1000.0

570678
type: LocalParameter
value: -1000.0

269361
type: SpeciesReference
stoichiometry: 1.0
species: 564348

269409
type: SpeciesReference
stoichiometry: 1.0
species: 564535

269385
type: SpeciesReference
stoichiometry: 1.0
species: 564366

269397
type: SpeciesReference
stoichiometry: 1.0
species: 565529

269373
type: SpeciesReference
stoichiometry: 1.0
species: 565033

565033
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Shikimate

567665
type: Reaction
kinetic law: 275416
product: 275403
reactant: 275390
reactant: 275377
notes: GPR_ASSOCIATION: RSP_2330 GENE_LIST: RSP_2330; SUBSYSTEM: Propanoate metabolism Equation: Pyruvate + Acetyl-CoA <=> Citramalyl-CoA Confidence Level: 3
fast: false
reversible: true
name: isopropylmalate/homocitrate synthase

571125
type: LocalParameter
value: 0.0

571123
type: LocalParameter
value: 0.0

571122
type: LocalParameter
value: 1000.0

571121
type: LocalParameter
value: -1000.0

275403
type: SpeciesReference
stoichiometry: 1.0
species: 566505

275390
type: SpeciesReference
stoichiometry: 1.0
species: 564405

275377
type: SpeciesReference
stoichiometry: 1.0
species: 564402

567236
type: Reaction
kinetic law: 252228
product: 252216
product: 252204
reactant: 252192
notes: GPR_ASSOCIATION: RSP_0155 or RSP_3833 or RSP_0913 or RSP_1340 or RSP_2196 GENE_LIST: RSP_0155; RSP_3833; RSP_0913; RSP_1340; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: 3-Hydroxyisovaleryl-CoA <=> 3-Methylcrotonyl-CoA + H2O Confidence Level: 2
fast: false
reversible: true
name: enoyl-CoA hydratase

569461
type: LocalParameter
value: 0.0

569460
type: LocalParameter
value: 0.0

569459
type: LocalParameter
value: 1000.0

569458
type: LocalParameter
value: -1000.0

252216
type: SpeciesReference
stoichiometry: 1.0
species: 564345

252204
type: SpeciesReference
stoichiometry: 1.0
species: 565511

565511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methylcrotonyl-CoA

252192
type: SpeciesReference
stoichiometry: 1.0
species: 565556

565556
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Hydroxyisovaleryl-CoA

564541
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Malonyl-CoA

566342
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Citrate[e]

568339
type: Reaction
reactant: 317301
reversible: true
product: 317338
kinetic law: 317350
notes: GPR_ASSOCIATION: RSP_2569 GENE_LIST: RSP_2569; SUBSYSTEM: Sulfolipid biosynthesis Equation: UDP-glucose + Sulfite + H+ <=> UDP-6-sulfoquinovose + H2O Confidence Level: 4
reactant: 317289
product: 317325
name: UDP-sulfoquinovose synthase
reactant: 317313
fast: false

317301
type: SpeciesReference
stoichiometry: 1.0
species: 564568

317338
type: SpeciesReference
stoichiometry: 1.0
species: 564345

575166
type: LocalParameter
value: 0.0

575164
type: LocalParameter
value: 0.0

575163
type: LocalParameter
value: 1000.0

575161
type: LocalParameter
value: -1000.0

317289
type: SpeciesReference
stoichiometry: 1.0
species: 564421

317325
type: SpeciesReference
stoichiometry: 1.0
species: 565891

317313
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567950
type: Reaction
kinetic law: 294693
product: 294681
reactant: 294669
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: phosphate[e] <=> phosphate[p] Confidence Level: 2
fast: false
reversible: true
name: phosphate transport via diffusion

573014
type: LocalParameter
value: 0.0

573012
type: LocalParameter
value: 0.0

573011
type: LocalParameter
value: 1000.0

573009
type: LocalParameter
value: -1000.0

294681
type: SpeciesReference
stoichiometry: 1.0
species: 566103

566103
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Orthophosphate[p]

294669
type: SpeciesReference
stoichiometry: 1.0
species: 566104

567800
type: Reaction
product: 284536
reactant: 284524
product: 284548
name: 6,7-dimethyl-8-ribityllumazine synthase
fast: false
reversible: false
product: 284560
kinetic law: 284585
product: 284572
notes: GPR_ASSOCIATION: RSP_0756 GENE_LIST: RSP_0756; SUBSYSTEM: Riboflavin metabolism Equation: 5-Amino-6-(1-D-ribitylamino)uracil + 3,4-Dihydroxy-2-butanone 4-phosphate <=> 6,7-Dimethyl-8-(1-D-ribityl)lumazine + orthophosphate + H+ Confidence Level: 2
reactant: 284512

284536
type: SpeciesReference
stoichiometry: 1.0
species: 565667

284524
type: SpeciesReference
stoichiometry: 1.0
species: 566488

566488
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3,4-Dihydroxy-2-butanone4-phosphate

284548
type: SpeciesReference
stoichiometry: 2.0
species: 564345

284560
type: SpeciesReference
stoichiometry: 1.0
species: 564369

572191
type: LocalParameter
value: 0.0

572189
type: LocalParameter
value: 0.0

572188
type: LocalParameter
value: 1000.0

572186
type: LocalParameter
value: 0.0

284572
type: SpeciesReference
stoichiometry: 1.0
species: 564535

284512
type: SpeciesReference
stoichiometry: 1.0
species: 565739

568090
type: Reaction
product: 302571
fast: false
reactant: 302547
reversible: false
product: 302583
kinetic law: 302596
name: Cytosine via Na+ symport
reactant: 302559
notes: GPR_ASSOCIATION: RSP_3174 GENE_LIST: RSP_3174; SUBSYSTEM: Transport, inner membrane Equation: Cytosine[p] + Sodium[p] <=> Cytosine + Sodium Confidence Level: 2

302571
type: SpeciesReference
stoichiometry: 1.0
species: 564955

302547
type: SpeciesReference
stoichiometry: 1.0
species: 566564

566564
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cytosine[p]

302583
type: SpeciesReference
stoichiometry: 1.0
species: 566254

573791
type: LocalParameter
value: 0.0

573789
type: LocalParameter
value: 0.0

573788
type: LocalParameter
value: 1000.0

573786
type: LocalParameter
value: 0.0

302559
type: SpeciesReference
stoichiometry: 1.0
species: 566255

568168
type: Reaction
product: 306086
product: 306098
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + D-Arabitol[p] <=> ADP + H+ + Orthophosphate + D-Arabitol Confidence Level: 1
reversible: false
product: 306074
kinetic law: 306110
reactant: 306050
reactant: 306037
fast: false
reactant: 306025
product: 306062
name: ABC D-Arabitol transporter

306086
type: SpeciesReference
stoichiometry: 1.0
species: 564369

306098
type: SpeciesReference
stoichiometry: 1.0
species: 566126

566126
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Arabitol

306074
type: SpeciesReference
stoichiometry: 1.0
species: 564535

574214
type: LocalParameter
value: 0.0

574213
type: LocalParameter
value: 0.0

574211
type: LocalParameter
value: 1000.0

574210
type: LocalParameter
value: 0.0

306050
type: SpeciesReference
stoichiometry: 1.0
species: 566668

566668
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Arabitol[p]

306037
type: SpeciesReference
stoichiometry: 1.0
species: 564345

306025
type: SpeciesReference
stoichiometry: 1.0
species: 564348

306062
type: SpeciesReference
stoichiometry: 1.0
species: 564366

567446
type: Reaction
kinetic law: 261935
product: 261923
reactant: 261911
reactant: 261899
notes: GPR_ASSOCIATION: RSP_2575 GENE_LIST: RSP_2575; SUBSYSTEM: Methane metabolism Equation: Glutathione + Formaldehyde <=> S-(Hydroxymethyl)glutathione Confidence Level: 3
fast: false
reversible: false
name: glutathione-dependent formaldehyde-activating enzyme

570145
type: LocalParameter
value: 0.0

570144
type: LocalParameter
value: 0.0

570143
type: LocalParameter
value: 1000.0

570141
type: LocalParameter
value: 0.0

261923
type: SpeciesReference
stoichiometry: 1.0
species: 565871

261911
type: SpeciesReference
stoichiometry: 1.0
species: 564508

261899
type: SpeciesReference
stoichiometry: 1.0
species: 564469

568258
type: Reaction
reactant: 311694
product: 311730
product: 311754
reversible: true
notes: GPR_ASSOCIATION: RSP_2959 GENE_LIST: RSP_2959; SUBSYSTEM: Vitamin B6 metabolism Equation: D-Erythrose 4-phosphate + NAD+ + H2O <=> 4-Phospho-D-erythronate + NADH + 2 H+ Confidence Level: 1
name: glyceraldehyde-3-phosphate dehydrogenase
reactant: 311706
reactant: 311718
kinetic law: 311766
product: 311742
fast: false

311694
type: SpeciesReference
stoichiometry: 1.0
species: 564862

311730
type: SpeciesReference
stoichiometry: 1.0
species: 566765

311754
type: SpeciesReference
stoichiometry: 2.0
species: 564535

311706
type: SpeciesReference
stoichiometry: 1.0
species: 564351

311718
type: SpeciesReference
stoichiometry: 1.0
species: 564345

574709
type: LocalParameter
value: 0.0

574707
type: LocalParameter
value: 0.0

574706
type: LocalParameter
value: 1000.0

574704
type: LocalParameter
value: -1000.0

311742
type: SpeciesReference
stoichiometry: 1.0
species: 564354

566686
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicCMP[e]

565990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Amino-2-oxopropylphosphate

567935
type: Reaction
kinetic law: 294149
product: 294137
reactant: 294125
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: spermidine[e] <=> spermidine[p] Confidence Level: 2
fast: false
reversible: true
name: spermidine transport via diffusion

572931
type: LocalParameter
value: 0.0

572930
type: LocalParameter
value: 0.0

572928
type: LocalParameter
value: 1000.0

572927
type: LocalParameter
value: -1000.0

294137
type: SpeciesReference
stoichiometry: 1.0
species: 566038

566038
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: spermidine[p]

294125
type: SpeciesReference
stoichiometry: 1.0
species: 566040

565828
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydrogenobyrinate

568068
type: Reaction
kinetic law: 301619
product: 301607
reactant: 301595
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-Threonine[e] <=> L-Threonine[p] Confidence Level: 2
fast: false
reversible: true
name: L-Threonine transport via diffusion

573670
type: LocalParameter
value: 0.0

573669
type: LocalParameter
value: 0.0

573667
type: LocalParameter
value: 1000.0

573666
type: LocalParameter
value: -1000.0

301607
type: SpeciesReference
stoichiometry: 1.0
species: 566532

566532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Threonine[p]

301595
type: SpeciesReference
stoichiometry: 1.0
species: 566533

566533
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Threonine[e]

565292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (3S)-3,6-Diaminohexanoate

567714
type: Reaction
name: nucleoside triphosphate pyrophosphohydrolase
reactant: 278625
reactant: 278613
reversible: false
kinetic law: 278674
fast: false
product: 278662
notes: GPR_ASSOCIATION: RSP_2912 GENE_LIST: RSP_2912; SUBSYSTEM: Purine metabolism Equation: dGTP + H2O <=> dGMP + Diphosphate + H+ Confidence Level: 2
product: 278637
product: 278649

278625
type: SpeciesReference
stoichiometry: 1.0
species: 564345

278613
type: SpeciesReference
stoichiometry: 1.0
species: 564868

564868
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dGTP

571385
type: LocalParameter
value: 0.0

571384
type: LocalParameter
value: 0.0

571382
type: LocalParameter
value: 1000.0

571381
type: LocalParameter
value: 0.0

278662
type: SpeciesReference
stoichiometry: 1.0
species: 564535

278637
type: SpeciesReference
stoichiometry: 1.0
species: 566235

278649
type: SpeciesReference
stoichiometry: 1.0
species: 564378

565066
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyinosine

566059
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: choline[e]

565415
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Val)

567652
type: Reaction
kinetic law: 274686
product: 274674
product: 274662
reactant: 274650
notes: GPR_ASSOCIATION: s0001 GENE_LIST: SUBSYSTEM: Propanoate metabolism Equation: (R)-3-Hydroxybutanoyl-CoA <=> Crotonoyl-CoA + H2O Confidence Level: 1
fast: false
reversible: false

571058
type: LocalParameter
value: 0.0

571056
type: LocalParameter
value: 0.0

571055
type: LocalParameter
value: 1000.0

571054
type: LocalParameter
value: 0.0

274674
type: SpeciesReference
stoichiometry: 1.0
species: 564345

274662
type: SpeciesReference
stoichiometry: 1.0
species: 566375

274650
type: SpeciesReference
stoichiometry: 1.0
species: 565895

566456
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Methylacetoacetyl-CoA

567742
type: Reaction
kinetic law: 280625
name: nucleoside diphosphate kinase
product: 280601
reversible: true
reactant: 280589
fast: false
notes: GPR_ASSOCIATION: RSP_2894 GENE_LIST: RSP_2894; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + CDP <=> ADP + CTP Confidence Level: 2
product: 280613
reactant: 280577

571525
type: LocalParameter
value: 0.0

571524
type: LocalParameter
value: 0.0

571522
type: LocalParameter
value: 1000.0

571521
type: LocalParameter
value: -1000.0

280601
type: SpeciesReference
stoichiometry: 1.0
species: 564366

280589
type: SpeciesReference
stoichiometry: 1.0
species: 564607

280613
type: SpeciesReference
stoichiometry: 1.0
species: 564499

280577
type: SpeciesReference
stoichiometry: 1.0
species: 564348

566716
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2-Oxoglutarate[e]

566152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Isoleucine[p]

567659
type: Reaction
kinetic law: 275024
product: 275012
reactant: 275000
reactant: 274988
notes: GPR_ASSOCIATION: RSP_0973 GENE_LIST: RSP_0973; SUBSYSTEM: Propanoate metabolism Equation: Mesaconyl-CoA + H2O <=> L-erythro-3-Methylmalyl-CoA Confidence Level: 3
fast: false
reversible: true
name: mesaconyl-CoA hydratase

571094
type: LocalParameter
value: 0.0

571092
type: LocalParameter
value: 0.0

571091
type: LocalParameter
value: 1000.0

571090
type: LocalParameter
value: -1000.0

275012
type: SpeciesReference
stoichiometry: 1.0
species: 566502

275000
type: SpeciesReference
stoichiometry: 1.0
species: 564345

274988
type: SpeciesReference
stoichiometry: 1.0
species: 566501

566501
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Mesaconyl-CoA

567881
type: Reaction
fast: false
product: 290835
reactant: 290786
reactant: 290774
product: 290811
product: 290798
reactant: 290762
product: 290823
reversible: false
name: ABC L-cysteine transporter
kinetic law: 290847
notes: GPR_ASSOCIATION: RSP_3742 and RSP_3744 and RSP_3745 GENE_LIST: RSP_3742; RSP_3744; RSP_3745; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + L-cysteine[p] <=> ADP + H+ + Orthophosphate + L-cysteine Confidence Level: 2

290835
type: SpeciesReference
stoichiometry: 1.0
species: 564577

290786
type: SpeciesReference
stoichiometry: 1.0
species: 566140

290774
type: SpeciesReference
stoichiometry: 1.0
species: 564345

290811
type: SpeciesReference
stoichiometry: 1.0
species: 564535

290798
type: SpeciesReference
stoichiometry: 1.0
species: 564366

290762
type: SpeciesReference
stoichiometry: 1.0
species: 564348

290823
type: SpeciesReference
stoichiometry: 1.0
species: 564369

572636
type: LocalParameter
value: 0.0

572634
type: LocalParameter
value: 0.0

572633
type: LocalParameter
value: 1000.0

572631
type: LocalParameter
value: 0.0

568226
type: Reaction
kinetic law: 308981
product: 308969
reactant: 308957
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Chitobiose[e] <=> Confidence Level:
fast: false
reversible: false
name: Chitobiose exchange

574533
type: LocalParameter
value: 0.0

574531
type: LocalParameter
value: 0.0

574530
type: LocalParameter
value: 1000.0

574528
type: LocalParameter
value: 0.0

308969
type: SpeciesReference
stoichiometry: 1.0
species: 566741

308957
type: SpeciesReference
stoichiometry: 1.0
species: 566739

566530
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Serine[e]

564937
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Fructose1,6-bisphosphate

567795
type: Reaction
reactant: 284174
notes: GPR_ASSOCIATION: RSP_4159 or RSP_2330 or RSP_2723 GENE_LIST: RSP_4159; RSP_2330; RSP_2723; SUBSYSTEM: Pyruvate metabolism Equation: (2S)-2-Isopropylmalate + CoA + H+ <=> Acetyl-CoA + 3-Methyl-2-oxobutanoic Confidence Level: 2
reversible: true
name: isopropylmalate/homocitrate synthase
product: 284222
product: 284198
reactant: 284162
reactant: 284186
kinetic law: 284234
fast: false
product: 284210

284174
type: SpeciesReference
stoichiometry: 1.0
species: 564372

284222
type: SpeciesReference
stoichiometry: 1.0
species: 564345

284198
type: SpeciesReference
stoichiometry: 1.0
species: 564405

284162
type: SpeciesReference
stoichiometry: 1.0
species: 565457

565457
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2S)-2-Isopropylmalate

284186
type: SpeciesReference
stoichiometry: 1.0
species: 564535

571790
type: LocalParameter
value: 0.0

571789
type: LocalParameter
value: 0.0

571787
type: LocalParameter
value: 1000.0

571786
type: LocalParameter
value: -1000.0

284210
type: SpeciesReference
stoichiometry: 1.0
species: 564670

567366
type: Reaction
fast: false
reversible: false
name: pyruvate kinase
reactant: 258010
product: 258058
product: 258046
kinetic law: 258070
notes: GPR_ASSOCIATION: RSP_1766 or RSP_1848 GENE_LIST: RSP_1766; RSP_1848; SUBSYSTEM: Glycolysis / Gluconeogenesis Equation: GTP + Pyruvate <=> GDP + Phosphoenolpyruvate Confidence Level: 4
product: 258034
reactant: 258022

258010
type: SpeciesReference
stoichiometry: 1.0
species: 564454

258058
type: SpeciesReference
stoichiometry: 1.0
species: 564535

258046
type: SpeciesReference
stoichiometry: 1.0
species: 564520

569859
type: LocalParameter
value: 0.0

569858
type: LocalParameter
value: 0.0

569857
type: LocalParameter
value: 0.0

569856
type: LocalParameter
value: -1000.0

258034
type: SpeciesReference
stoichiometry: 1.0
species: 564430

258022
type: SpeciesReference
stoichiometry: 1.0
species: 564402

568055
type: Reaction
kinetic law: 300904
product: 300892
reactant: 300880
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Acetate[e] <=> Confidence Level:
fast: false
reversible: false
name: Acetate exchange

573599
type: LocalParameter
value: 0.0

573597
type: LocalParameter
value: 0.0

573596
type: LocalParameter
value: 1000.0

573594
type: LocalParameter
value: 0.0

300892
type: SpeciesReference
stoichiometry: 1.0
species: 566518

566518
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Acetate[e]

300880
type: SpeciesReference
stoichiometry: 1.0
species: 566517

566517
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Acetate[e]

568145
type: Reaction
kinetic law: 305024
product: 305011
reactant: 304999
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: D-Glycerate[e] <=> Confidence Level:
fast: false
reversible: false
name: D-Glycerate exchange

574088
type: LocalParameter
value: 0.0

574086
type: LocalParameter
value: 0.0

574085
type: LocalParameter
value: 1000.0

574083
type: LocalParameter
value: 0.0

305011
type: SpeciesReference
stoichiometry: 1.0
species: 566638

566638
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Glycerate[e]

304999
type: SpeciesReference
stoichiometry: 1.0
species: 566637

567423
type: Reaction
kinetic law: 260839
notes: GPR_ASSOCIATION: RSP_2716 GENE_LIST: RSP_2716; SUBSYSTEM: Lipopolysaccharide biosynthesis Equation: UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + 2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3,2',3'-Tetrakis(3 hydroxytetradecanoyl)-D-glucosaminyl-1,6-beta-D-glucosamine 1-phosphate + H+ Confidence Level: 2
product: 260803
fast: false
reversible: true
reactant: 260791
name: lipid-A-disaccharide synthase
reactant: 260779
product: 260815
product: 260827

570062
type: LocalParameter
value: 0.0

570061
type: LocalParameter
value: 0.0

570060
type: LocalParameter
value: 1000.0

570058
type: LocalParameter
value: -1000.0

260803
type: SpeciesReference
stoichiometry: 1.0
species: 564384

260791
type: SpeciesReference
stoichiometry: 1.0
species: 565763

260779
type: SpeciesReference
stoichiometry: 1.0
species: 565721

260815
type: SpeciesReference
stoichiometry: 1.0
species: 565778

565778
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,3,2',3'-Tetrakis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6-beta-

260827
type: SpeciesReference
stoichiometry: 1.0
species: 564535

565799
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Phytyldiphosphate

566617
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hypoxanthine[e]

567601
type: Reaction
notes: GPR_ASSOCIATION: RSP_0680 GENE_LIST: RSP_0680; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Uroporphyrinogen I + 4H+ <=> Coproporphyrinogen I + 4 CO2 Confidence Level: 4
reversible: true
product: 270802
fast: false
reactant: 270778
kinetic law: 270826
reactant: 270790
product: 270814
name: uroporphyrinogen decarboxylase

270802
type: SpeciesReference
stoichiometry: 1.0
species: 566124

566124
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: CoproporphyrinogenI

270778
type: SpeciesReference
stoichiometry: 1.0
species: 566123

570792
type: LocalParameter
value: 0.0

570790
type: LocalParameter
value: 0.0

570789
type: LocalParameter
value: 1000.0

570788
type: LocalParameter
value: -1000.0

270790
type: SpeciesReference
stoichiometry: 4.0
species: 564535

270814
type: SpeciesReference
stoichiometry: 4.0
species: 564375

567919
type: Reaction
kinetic law: 293566
product: 293554
reactant: 293542
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: D-Alanyl-D-alanine[e] <=> D-Alanyl-D-alanine[p] Confidence Level: 2
fast: false
reversible: true
name: D-Alanyl-D-alanine transport via diffusion

572844
type: LocalParameter
value: 0.0

572842
type: LocalParameter
value: 0.0

572841
type: LocalParameter
value: 1000.0

572839
type: LocalParameter
value: -1000.0

293554
type: SpeciesReference
stoichiometry: 1.0
species: 566164

566164
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: D-Alanyl-D-alanine[p]

293542
type: SpeciesReference
stoichiometry: 1.0
species: 566166

566166
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Alanyl-D-alanine[e]

564661
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Putrescine

565382
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Gly)

566219
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glyceraldehyde

565120
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dTDP-4-dehydro-6-deoxy-L-mannose

568027
type: Reaction
notes: GPR_ASSOCIATION: RSP_2372 GENE_LIST: RSP_2372; SUBSYSTEM: Pyruvate metabolism Equation: Methylglyoxal + NAD+ + H2O <=> Pyruvate + NADH + 2 H+ Confidence Level: 2
name: aldehyde dehydrogenase
product: 299118
product: 299130
reversible: true
reactant: 299069
reactant: 299094
product: 299106
kinetic law: 299143
reactant: 299082
fast: false

299118
type: SpeciesReference
stoichiometry: 1.0
species: 564354

299130
type: SpeciesReference
stoichiometry: 2.0
species: 564535

299069
type: SpeciesReference
stoichiometry: 1.0
species: 565048

565048
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Methylglyoxal

299094
type: SpeciesReference
stoichiometry: 1.0
species: 564345

299106
type: SpeciesReference
stoichiometry: 1.0
species: 564402

573445
type: LocalParameter
value: 0.0

573443
type: LocalParameter
value: 0.0

573442
type: LocalParameter
value: 1000.0

573440
type: LocalParameter
value: -1000.0

299082
type: SpeciesReference
stoichiometry: 1.0
species: 564351

568198
type: Reaction
kinetic law: 307618
product: 307606
product: 307594
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Arginine and proline metabolism Equation: L-Arginine + H+ <=> Agmatine + CO2 Confidence Level: 1
reactant: 307582
fast: false
reversible: false
name: L-arginine carboxy-lyase (agmatine-forming)
reactant: 307570

574379
type: LocalParameter
value: 0.0

574378
type: LocalParameter
value: 0.0

574376
type: LocalParameter
value: 1000.0

574375
type: LocalParameter
value: 0.0

307606
type: SpeciesReference
stoichiometry: 1.0
species: 564375

307594
type: SpeciesReference
stoichiometry: 1.0
species: 564733

307582
type: SpeciesReference
stoichiometry: 1.0
species: 564535

307570
type: SpeciesReference
stoichiometry: 1.0
species: 564496

564496
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Arginine

567391
type: Reaction
kinetic law: 259253
product: 259241
product: 259229
reactant: 259217
notes: GPR_ASSOCIATION: RSP_3146 and RSP_3145 GENE_LIST: RSP_3146; RSP_3145; SUBSYSTEM: Glyoxylate and dicarboxylate metabolism Equation: (R,R)-Tartaric acid <=> Oxaloacetate + H2O Confidence Level: 2
fast: false
reversible: false
name: fumarase

569942
type: LocalParameter
value: 0.0

569941
type: LocalParameter
value: 0.0

569940
type: LocalParameter
value: 1000.0

569939
type: LocalParameter
value: 0.0

259241
type: SpeciesReference
stoichiometry: 1.0
species: 564345

259229
type: SpeciesReference
stoichiometry: 1.0
species: 564433

259217
type: SpeciesReference
stoichiometry: 1.0
species: 565211

565211
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R,R)-Tartaricacid

568355
type: Reaction
product: 318160
reactant: 318148
reactant: 318136
product: 318172
reversible: true
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: 3'-AMP[p] + H+[p] <=> 3'-AMP + H+ Confidence Level: 1
fast: false
name: 3'-AMP transport via proton symport
kinetic law: 318184

318160
type: SpeciesReference
stoichiometry: 1.0
species: 566239

566239
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3'-AMP

318148
type: SpeciesReference
stoichiometry: 1.0
species: 566248

318136
type: SpeciesReference
stoichiometry: 1.0
species: 566300

566300
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 3'-AMP[p]

318172
type: SpeciesReference
stoichiometry: 1.0
species: 564535

575254
type: LocalParameter
value: 0.0

575252
type: LocalParameter
value: 0.0

575251
type: LocalParameter
value: 1000.0

575249
type: LocalParameter
value: -1000.0

567481
type: Reaction
reactant: 263830
notes: GPR_ASSOCIATION: RSP_0539 and RSP_0540 and RSP_0541 GENE_LIST: RSP_0539; RSP_0540; RSP_0541; SUBSYSTEM: Nitrogen metabolism Equation: 2 ATP + Reduced ferredoxin + 2 H2O <=> 2 Orthophosphate + 2 ADP + Oxidized ferredoxin + Hydrogen Confidence Level: 2
reactant: 263842
kinetic law: 263914
product: 263878
name: nitrogenase molybdenum-iron protein beta chain
product: 263866
product: 263890
reversible: false
fast: false
product: 263902
reactant: 263854

263830
type: SpeciesReference
stoichiometry: 2.0
species: 564348

263842
type: SpeciesReference
stoichiometry: 1.0
species: 565943

570269
type: LocalParameter
value: 0.0

570267
type: LocalParameter
value: 0.0

570266
type: LocalParameter
value: 1000.0

570264
type: LocalParameter
value: 0.0

263878
type: SpeciesReference
stoichiometry: 2.0
species: 564366

263866
type: SpeciesReference
stoichiometry: 2.0
species: 564369

263890
type: SpeciesReference
stoichiometry: 1.0
species: 565945

263902
type: SpeciesReference
stoichiometry: 1.0
species: 565924

565924
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydrogen

263854
type: SpeciesReference
stoichiometry: 2.0
species: 564345

567544
type: Reaction
kinetic law: 267143
product: 267131
reactant: 267119
notes: GPR_ASSOCIATION: RSP_0359 GENE_LIST: RSP_0359; SUBSYSTEM: Pentose phosphate pathway Equation: D-Ribose 5-phosphate <=> D-Ribulose 5-phosphate Confidence Level: 2
fast: false
reversible: true
name: ribose-5-phosphate isomerase A

570508
type: LocalParameter
value: 0.0

570506
type: LocalParameter
value: 0.0

570505
type: LocalParameter
value: 1000.0

570504
type: LocalParameter
value: -1000.0

267131
type: SpeciesReference
stoichiometry: 1.0
species: 564763

267119
type: SpeciesReference
stoichiometry: 1.0
species: 564616

567069
type: Reaction
kinetic law: 246079
product: 246067
reactant: 246055
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-leucine[e] <=> Confidence Level:
fast: false
reversible: false
name: L-leucine exchange

568974
type: LocalParameter
value: 0.0

568973
type: LocalParameter
value: 0.0

568972
type: LocalParameter
value: 1000.0

568971
type: LocalParameter
value: 0.0

246067
type: SpeciesReference
stoichiometry: 1.0
species: 566151

566151
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Leucine[e]

246055
type: SpeciesReference
stoichiometry: 1.0
species: 566150

567872
type: Reaction
kinetic law: 289987
product: 289972
reactant: 289924
product: 289960
name: ABC sucrose transporter
product: 289948
reactant: 289911
reactant: 289899
fast: false
product: 289936
reversible: false
notes: GPR_ASSOCIATION: RSP_2870 and RSP_2871 and RSP_2872 and RSP_2873 GENE_LIST: RSP_2870; RSP_2871; RSP_2872; RSP_2873; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + sucrose[p] <=> ADP + H+ + Orthophosphate + sucrose Confidence Level: 2

572586
type: LocalParameter
value: 0.0

572585
type: LocalParameter
value: 0.0

572583
type: LocalParameter
value: 1000.0

572582
type: LocalParameter
value: 0.0

289972
type: SpeciesReference
stoichiometry: 1.0
species: 564556

289924
type: SpeciesReference
stoichiometry: 1.0
species: 566076

289960
type: SpeciesReference
stoichiometry: 1.0
species: 564369

289948
type: SpeciesReference
stoichiometry: 1.0
species: 564535

289911
type: SpeciesReference
stoichiometry: 1.0
species: 564345

289899
type: SpeciesReference
stoichiometry: 1.0
species: 564348

289936
type: SpeciesReference
stoichiometry: 1.0
species: 564366

567511
type: Reaction
reactant: 265654
product: 265666
kinetic law: 265702
product: 265678
fast: false
notes: GPR_ASSOCIATION: RSP_1235 GENE_LIST: RSP_1235; SUBSYSTEM: Pantothenate and CoA biosynthesis Equation: ATP + Dephospho-CoA <=> ADP + CoA + H+ Confidence Level: 2
reactant: 265642
reversible: false
product: 265690
name: dephospho-CoA kinase

265654
type: SpeciesReference
stoichiometry: 1.0
species: 565205

265666
type: SpeciesReference
stoichiometry: 1.0
species: 564366

570380
type: LocalParameter
value: 0.0

570378
type: LocalParameter
value: 0.0

570377
type: LocalParameter
value: 1000.0

570376
type: LocalParameter
value: 0.0

265678
type: SpeciesReference
stoichiometry: 1.0
species: 564372

265642
type: SpeciesReference
stoichiometry: 1.0
species: 564348

265690
type: SpeciesReference
stoichiometry: 1.0
species: 564535

568218
type: Reaction
product: 308547
notes: GPR_ASSOCIATION: RSP_0311 GENE_LIST: RSP_0311; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: ATP + L-Homoserine <=> ADP + O-Phospho-L-homoserine + H+ Confidence Level: 2
kinetic law: 308584
fast: false
product: 308572
reactant: 308535
reactant: 308523
reversible: true
product: 308560

308547
type: SpeciesReference
stoichiometry: 1.0
species: 564366

574489
type: LocalParameter
value: 0.0

574488
type: LocalParameter
value: 0.0

574486
type: LocalParameter
value: 1000.0

574485
type: LocalParameter
value: -1000.0

308572
type: SpeciesReference
stoichiometry: 1.0
species: 564535

308535
type: SpeciesReference
stoichiometry: 1.0
species: 564847

564847
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Homoserine

308523
type: SpeciesReference
stoichiometry: 1.0
species: 564348

308560
type: SpeciesReference
stoichiometry: 1.0
species: 565277

565277
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: O-Phospho-L-homoserine

567781
type: Reaction
reactant: 283088
reactant: 283100
kinetic law: 283172
product: 283124
name: pyruvate carboxylase
product: 283136
notes: GPR_ASSOCIATION: RSP_2090 GENE_LIST: RSP_2090; SUBSYSTEM: Pyruvate metabolism Equation: ATP + Pyruvate + HCO3- <=> ADP + Orthophosphate + Oxaloacetate + H+ Confidence Level: 3
reversible: false
fast: false
product: 283160
reactant: 283112
product: 283148

283088
type: SpeciesReference
stoichiometry: 1.0
species: 564348

283100
type: SpeciesReference
stoichiometry: 1.0
species: 564402

571720
type: LocalParameter
value: 0.0

571719
type: LocalParameter
value: 0.0

571717
type: LocalParameter
value: 1000.0

571716
type: LocalParameter
value: 0.0

283124
type: SpeciesReference
stoichiometry: 1.0
species: 564366

283136
type: SpeciesReference
stoichiometry: 1.0
species: 564369

283160
type: SpeciesReference
stoichiometry: 1.0
species: 564535

283112
type: SpeciesReference
stoichiometry: 1.0
species: 564871

283148
type: SpeciesReference
stoichiometry: 1.0
species: 564433

565733
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Dehydro-3-deoxy-D-arabino-heptonate7-phosphate

564808
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Succinatesemialdehyde

567598
type: Reaction
notes: GPR_ASSOCIATION: RSP_0279 GENE_LIST: RSP_0279; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Bacteriochlorophyllide b + Phytyl diphosphate <=> Bacteriochlorophyll b + Diphosphate Confidence Level: 4
name: bacteriochlorophyll/chlorophyll a synthase
kinetic law: 270633
reactant: 270585
product: 270609
fast: false
reactant: 270597
reversible: true
product: 270621

570776
type: LocalParameter
value: 0.0

570774
type: LocalParameter
value: 0.0

570773
type: LocalParameter
value: 1000.0

570772
type: LocalParameter
value: -1000.0

270585
type: SpeciesReference
stoichiometry: 1.0
species: 564490

564490
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Bacteriochlorophyllideb

270609
type: SpeciesReference
stoichiometry: 1.0
species: 566444

566444
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Bacteriochlorophyllb

270597
type: SpeciesReference
stoichiometry: 1.0
species: 565799

270621
type: SpeciesReference
stoichiometry: 1.0
species: 564378

567754
type: Reaction
notes: GPR_ASSOCIATION: RSP_0955 or RSP_2545 GENE_LIST: RSP_0955; RSP_2545; SUBSYSTEM: Pyrimidine metabolism Equation: UMP + H2O <=> Uridine + Orthophosphate Confidence Level: 2
reactant: 281336
product: 281360
fast: false
reactant: 281348
reversible: false
product: 281373
name: 5-nucleotidase
kinetic law: 281385

281336
type: SpeciesReference
stoichiometry: 1.0
species: 564592

281360
type: SpeciesReference
stoichiometry: 1.0
species: 564880

564880
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Uridine

281348
type: SpeciesReference
stoichiometry: 1.0
species: 564345

281373
type: SpeciesReference
stoichiometry: 1.0
species: 564369

571585
type: LocalParameter
value: 0.0

571584
type: LocalParameter
value: 0.0

571582
type: LocalParameter
value: 1000.0

571581
type: LocalParameter
value: 0.0

567325
type: Reaction
notes: GPR_ASSOCIATION: RSP_3087 GENE_LIST: RSP_3087; SUBSYSTEM: Glycerophospholipid metabolism Equation: ATP + 1,2-Diacyl-sn-glycerol <=> ADP + Phosphatidate + H+ Confidence Level: 2
product: 256035
reversible: true
product: 256011
kinetic law: 256047
fast: false
reactant: 255999
product: 256023
name: diacylglycerol kinase
reactant: 255987

256035
type: SpeciesReference
stoichiometry: 1.0
species: 564535

256011
type: SpeciesReference
stoichiometry: 1.0
species: 564366

569701
type: LocalParameter
value: 0.0

569700
type: LocalParameter
value: 0.0

569699
type: LocalParameter
value: 1000.0

569698
type: LocalParameter
value: -1000.0

255999
type: SpeciesReference
stoichiometry: 1.0
species: 565081

565081
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 1,2-Diacyl-sn-glycerol

256023
type: SpeciesReference
stoichiometry: 1.0
species: 564979

255987
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567415
type: Reaction
product: 260390
reactant: 260341
reactant: 260365
name: lipoyl synthase
fast: false
product: 260377
notes: GPR_ASSOCIATION: RSP_2783 GENE_LIST: RSP_2783; SUBSYSTEM: Lipoic acid metabolism Equation: Octanoyl-[acp] + 2 Sulfur + 2 S-Adenosyl-L-methionine + 2 H+ <=> Lipoyl-[acp] + 2 L-Methionine + 2 5'-Deoxyadenosine Confidence Level: 2
reactant: 260329
reactant: 260353
product: 260402
kinetic law: 260414
reversible: true

260390
type: SpeciesReference
stoichiometry: 2.0
species: 564517

260341
type: SpeciesReference
stoichiometry: 2.0
species: 564553

564553
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Sulfur

260365
type: SpeciesReference
stoichiometry: 2.0
species: 564535

260377
type: SpeciesReference
stoichiometry: 1.0
species: 565925

260329
type: SpeciesReference
stoichiometry: 1.0
species: 565801

565801
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Octanoyl-[acp]

260353
type: SpeciesReference
stoichiometry: 2.0
species: 564393

260402
type: SpeciesReference
stoichiometry: 2.0
species: 565784

570032
type: LocalParameter
value: 0.0

570031
type: LocalParameter
value: 0.0

570030
type: LocalParameter
value: 1000.0

570028
type: LocalParameter
value: -1000.0

565775
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-(5-Phospho-D-ribosylaminoformimino)-1-(5-phosphoribosyl)-

567140
type: Reaction
kinetic law: 247973
product: 247961
reactant: 247949
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-Alanine[e] <=> Confidence Level:
fast: false
reversible: false
name: L-Alanine exchange

569184
type: LocalParameter
value: 0.0

569183
type: LocalParameter
value: 0.0

569182
type: LocalParameter
value: 1000.0

569181
type: LocalParameter
value: 0.0

247961
type: SpeciesReference
stoichiometry: 1.0
species: 566323

566323
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Alanine[e]

247949
type: SpeciesReference
stoichiometry: 1.0
species: 566322

567225
type: Reaction
kinetic law: 251889
product: 251877
product: 251865
reactant: 251853
notes: GPR_ASSOCIATION: RSP_0155 or RSP_3833 or RSP_0913 or RSP_1340 or RSP_2196 GENE_LIST: RSP_0155; RSP_3833; RSP_0913; RSP_1340; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: (S)-3-Hydroxyhexadecanoyl-CoA <=> trans-Hexadec-2-enoyl-CoA + H2O Confidence Level: 2
fast: false
reversible: true
name: enoyl-CoA hydratase

569433
type: LocalParameter
value: 0.0

569432
type: LocalParameter
value: 0.0

569431
type: LocalParameter
value: 1000.0

569430
type: LocalParameter
value: -1000.0

251877
type: SpeciesReference
stoichiometry: 1.0
species: 564345

251865
type: SpeciesReference
stoichiometry: 1.0
species: 566351

566351
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Hexadec-2-enoyl-CoA

251853
type: SpeciesReference
stoichiometry: 1.0
species: 565781

565781
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxyhexadecanoyl-CoA

568275
type: Reaction
kinetic law: 312663
product: 312651
reactant: 312639
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Dimethyl sulfide[e] <=> Dimethyl sulfide[p] Confidence Level: 2
fast: false
reversible: true
name: Dimethyl sulfide transport via diffusion

574802
type: LocalParameter
value: 0.0

574801
type: LocalParameter
value: 0.0

574799
type: LocalParameter
value: 1000.0

574798
type: LocalParameter
value: -1000.0

312651
type: SpeciesReference
stoichiometry: 1.0
species: 566778

566778
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Dimethylsulfide[p]

312639
type: SpeciesReference
stoichiometry: 1.0
species: 566782

566782
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Dimethylsulfide[e]

564724
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Lauroyl-KDO2-lipidIV(A)

565445
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-L-iduronate

568184
type: Reaction
kinetic law: 306883
product: 306871
reactant: 306858
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 2',3'-Cyclic UMP[e] <=> Confidence Level:
fast: false
reversible: false
name: 2',3'-Cyclic UMP exchange

574302
type: LocalParameter
value: 0.0

574301
type: LocalParameter
value: 0.0

574299
type: LocalParameter
value: 1000.0

574298
type: LocalParameter
value: 0.0

306871
type: SpeciesReference
stoichiometry: 1.0
species: 566690

566690
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 2',3'-CyclicUMP[e]

306858
type: SpeciesReference
stoichiometry: 1.0
species: 566689

565400
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Phe)

567462
type: Reaction
name: nicotinic acid mononucleotide adenylyltransferase
fast: false
reactant: 262709
reversible: true
product: 262745
kinetic law: 262769
notes: GPR_ASSOCIATION: RSP_0586 GENE_LIST: RSP_0586; SUBSYSTEM: Nicotinate and nicotinamide metabolism Equation: ATP + Nicotinamide D-ribonucleotide + H+ <=> Diphosphate + NAD+ Confidence Level: 2
reactant: 262733
reactant: 262721
product: 262757

262709
type: SpeciesReference
stoichiometry: 1.0
species: 564348

262745
type: SpeciesReference
stoichiometry: 1.0
species: 564378

570198
type: LocalParameter
value: 0.0

570197
type: LocalParameter
value: 0.0

570196
type: LocalParameter
value: 1000.0

570194
type: LocalParameter
value: -1000.0

262733
type: SpeciesReference
stoichiometry: 1.0
species: 564535

262721
type: SpeciesReference
stoichiometry: 1.0
species: 565012

565012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: NicotinamideD-ribonucleotide

262757
type: SpeciesReference
stoichiometry: 1.0
species: 564351

567951
type: Reaction
kinetic law: 294729
product: 294717
reactant: 294705
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: glutamate[e] <=> glutamate[p] Confidence Level: 2
fast: false
reversible: true
name: L-glutamate transport via diffusion

573019
type: LocalParameter
value: 0.0

573018
type: LocalParameter
value: 0.0

573016
type: LocalParameter
value: 1000.0

573015
type: LocalParameter
value: -1000.0

294717
type: SpeciesReference
stoichiometry: 1.0
species: 566107

566107
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: L-Glutamate[p]

294705
type: SpeciesReference
stoichiometry: 1.0
species: 566108

566108
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Glutamate[e]

564970
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Isoleucine

567054
type: Reaction
product: 245488
fast: false
kinetic law: 245524
reactant: 245464
reversible: false
notes: GPR_ASSOCIATION: RSP_4161 or RSP_2431 or RSP_2917 GENE_LIST: RSP_4161; RSP_2431; RSP_2917; SUBSYSTEM: Cysteine and methionine metabolism Equation: O-Acetyl-L-homoserine + Hydrogen sulfide <=> L-Homocysteine + Acetate Confidence Level: 2
reactant: 245476
name: O-acetylhomoserine sulfhydrylase
product: 245512
product: 245500

245488
type: SpeciesReference
stoichiometry: 1.0
species: 564694

568929
type: LocalParameter
value: 0.0

568928
type: LocalParameter
value: 0.0

568927
type: LocalParameter
value: 1000.0

568926
type: LocalParameter
value: 0.0

245464
type: SpeciesReference
stoichiometry: 1.0
species: 565259

245476
type: SpeciesReference
stoichiometry: 1.0
species: 564865

564865
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydrogensulfide

245512
type: SpeciesReference
stoichiometry: 1.0
species: 564535

245500
type: SpeciesReference
stoichiometry: 1.0
species: 564427

567760
type: Reaction
reactant: 281712
fast: false
notes: GPR_ASSOCIATION: RSP_0957 GENE_LIST: RSP_0957; SUBSYSTEM: Pyrimidine metabolism Equation: (S)-Dihydroorotate + Oxygen <=> Orotate + H2O2 Confidence Level: 2
reactant: 281700
product: 281724
kinetic law: 281748
reversible: false
name: dihydroorotate dehydrogenase 2
product: 281736

281712
type: SpeciesReference
stoichiometry: 1.0
species: 564363

281700
type: SpeciesReference
stoichiometry: 1.0
species: 564907

564907
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Dihydroorotate

281724
type: SpeciesReference
stoichiometry: 1.0
species: 564877

564877
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Orotate

571615
type: LocalParameter
value: 0.0

571614
type: LocalParameter
value: 0.0

571612
type: LocalParameter
value: 1000.0

571611
type: LocalParameter
value: 0.0

281736
type: SpeciesReference
stoichiometry: 1.0
species: 564418

568240
type: Reaction
kinetic law: 309728
product: 309716
reactant: 309704
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: (R)-2-Methylmalate[e] <=> Confidence Level:
fast: false
reversible: false
name: (R)-2-Methylmalate exchange

574610
type: LocalParameter
value: 0.0

574608
type: LocalParameter
value: 0.0

574607
type: LocalParameter
value: 1000.0

574605
type: LocalParameter
value: 0.0

309716
type: SpeciesReference
stoichiometry: 1.0
species: 566753

566753
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (R)-2-Methylmalate[e]

309704
type: SpeciesReference
stoichiometry: 1.0
species: 566751

566734
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Hippurate[p]

567958
type: Reaction
kinetic law: 294984
product: 294971
reactant: 294959
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: CO2[e] <=> CO2[p] Confidence Level: 2
fast: false
reversible: true
name: CO2 transport via diffusion

573061
type: LocalParameter
value: 0.0

573060
type: LocalParameter
value: 0.0

573058
type: LocalParameter
value: 1000.0

573057
type: LocalParameter
value: -1000.0

294971
type: SpeciesReference
stoichiometry: 1.0
species: 566264

294959
type: SpeciesReference
stoichiometry: 1.0
species: 566266

566266
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: CO2[e]

568105
type: Reaction
kinetic law: 303236
product: 303224
reactant: 303212
notes: GPR_ASSOCIATION: RSP_1897 GENE_LIST: RSP_1897; SUBSYSTEM: Transport, inner membrane Equation: Magnesium[p] <=> Magnesium Confidence Level: 2
fast: false
reversible: false
name: Magnesium transporter

573873
type: LocalParameter
value: 0.0

573872
type: LocalParameter
value: 0.0

573870
type: LocalParameter
value: 1000.0

573869
type: LocalParameter
value: 0.0

303224
type: SpeciesReference
stoichiometry: 1.0
species: 564883

564883
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Magnesium

303212
type: SpeciesReference
stoichiometry: 1.0
species: 566584

566584
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Magnesium[p]

568098
type: Reaction
kinetic law: 302935
product: 302923
reactant: 302911
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: (R)-Lactate[e] <=> (R)-Lactate[p] Confidence Level: 2
fast: false
reversible: true
name: (R)-Lactate transport via diffusion

573835
type: LocalParameter
value: 0.0

573833
type: LocalParameter
value: 0.0

573832
type: LocalParameter
value: 1000.0

573830
type: LocalParameter
value: -1000.0

302923
type: SpeciesReference
stoichiometry: 1.0
species: 566572

566572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: (R)-Lactate[p]

302911
type: SpeciesReference
stoichiometry: 1.0
species: 566573

568157
type: Reaction
kinetic law: 305567
product: 305555
reactant: 305542
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Nitrite[e] <=> Confidence Level:
fast: false
reversible: false
name: Nitrite exchange

574154
type: LocalParameter
value: 0.0

574152
type: LocalParameter
value: 0.0

574151
type: LocalParameter
value: 1000.0

574149
type: LocalParameter
value: 0.0

305555
type: SpeciesReference
stoichiometry: 1.0
species: 566654

566654
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nitrite[e]

305542
type: SpeciesReference
stoichiometry: 1.0
species: 566653

565340
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 4-Amino-5-hydroxymethyl-2-methylpyrimidine

568247
type: Reaction
kinetic law: 311003
product: 310991
reactant: 310979
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Hydrogen sulfide[e] <=> Confidence Level:
fast: false
reversible: false
name: Hydrogen sulfide exchange

574648
type: LocalParameter
value: 0.0

574647
type: LocalParameter
value: 0.0

574645
type: LocalParameter
value: 1000.0

574644
type: LocalParameter
value: 0.0

310991
type: SpeciesReference
stoichiometry: 1.0
species: 566761

566761
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hydrogensulfide[e]

310979
type: SpeciesReference
stoichiometry: 1.0
species: 566759

566759
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hydrogensulfide[e]

567924
type: Reaction
kinetic law: 293748
product: 293735
reactant: 293723
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Cu2+[e] <=> Cu2+[p] Confidence Level: 2
fast: false
reversible: true
name: Cu2+ transport via diffusion

572871
type: LocalParameter
value: 0.0

572870
type: LocalParameter
value: 0.0

572868
type: LocalParameter
value: 1000.0

572867
type: LocalParameter
value: -1000.0

293735
type: SpeciesReference
stoichiometry: 1.0
species: 566187

566187
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Cu2+[p]

293723
type: SpeciesReference
stoichiometry: 1.0
species: 566188

565676
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5'-Phosphoribosyl-N-formylglycinamide

567674
type: Reaction
product: 276038
notes: GPR_ASSOCIATION: RSP_1970 GENE_LIST: RSP_1970; SUBSYSTEM: Purine metabolism Equation: 10-Formyltetrahydrofolate + 5'-Phosphoribosylglycinamide <=> Tetrahydrofolate + 5'-Phosphoribosyl-N-formylglycinamide + H+ Confidence Level: 2
name: phosphoribosylglycinamide formyltransferase
fast: false
product: 276062
reversible: true
reactant: 276026
product: 276050
reactant: 276013
kinetic law: 276074

276038
type: SpeciesReference
stoichiometry: 1.0
species: 564586

276062
type: SpeciesReference
stoichiometry: 1.0
species: 564535

276026
type: SpeciesReference
stoichiometry: 1.0
species: 565619

565619
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5'-Phosphoribosylglycinamide

276050
type: SpeciesReference
stoichiometry: 1.0
species: 565676

276013
type: SpeciesReference
stoichiometry: 1.0
species: 564811

571171
type: LocalParameter
value: 0.0

571169
type: LocalParameter
value: 0.0

571168
type: LocalParameter
value: 1000.0

571167
type: LocalParameter
value: -1000.0

567191
type: Reaction
reactant: 250507
product: 250555
product: 250543
kinetic law: 250567
notes: GPR_ASSOCIATION: RSP_3177 or RSP_3468 or RSP_2464 or RSP_2777 GENE_LIST: RSP_3177; RSP_3468; RSP_2464; RSP_2777; SUBSYSTEM: Fatty acid biosynthesis Equation: Decanoyl-[acp] + Malonyl-[acyl-carrier protein] <=> 3-Oxododecanoyl-[acp] + CO2 + Acyl-carrier protein Confidence Level: 2
fast: false
name: 3-oxoacyl-[acyl-carrier-protein] synthase I
reactant: 250519
product: 250531
reversible: true

250507
type: SpeciesReference
stoichiometry: 1.0
species: 566437

250555
type: SpeciesReference
stoichiometry: 1.0
species: 564802

250543
type: SpeciesReference
stoichiometry: 1.0
species: 564375

569340
type: LocalParameter
value: 0.0

569339
type: LocalParameter
value: 0.0

569338
type: LocalParameter
value: 1000.0

569337
type: LocalParameter
value: -1000.0

250519
type: SpeciesReference
stoichiometry: 1.0
species: 565313

250531
type: SpeciesReference
stoichiometry: 1.0
species: 566428

566428
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxododecanoyl-[acp]

567703
type: Reaction
product: 277937
kinetic law: 277949
product: 277925
reactant: 277913
reversible: true
fast: false
notes: GPR_ASSOCIATION: RSP_2914 GENE_LIST: RSP_2914; SUBSYSTEM: Purine metabolism Equation: Inosine + H2O <=> Hypoxanthine + D-Ribose Confidence Level: 2
reactant: 277901
name: nucleoside hydrolase

277937
type: SpeciesReference
stoichiometry: 1.0
species: 564628

571330
type: LocalParameter
value: 0.0

571329
type: LocalParameter
value: 0.0

571327
type: LocalParameter
value: 1000.0

571326
type: LocalParameter
value: -1000.0

277925
type: SpeciesReference
stoichiometry: 1.0
species: 564844

277913
type: SpeciesReference
stoichiometry: 1.0
species: 564345

277901
type: SpeciesReference
stoichiometry: 1.0
species: 564874

564874
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Inosine

567583
type: Reaction
notes: GPR_ASSOCIATION: (RSP_2004 and RSP_2002) or (RSP_2004 and RSP_0244) GENE_LIST: RSP_2004; RSP_2002; RSP_2004; RSP_0244; SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis Equation: Chorismate + L-Glutamine <=> Anthranilate + Pyruvate + L-Glutamate + H+ Confidence Level: 2
product: 269566
name: anthranilate synthase component I
reactant: 269554
product: 269590
product: 269578
reversible: false
reactant: 269542
product: 269602
fast: false
kinetic law: 269614

269566
type: SpeciesReference
stoichiometry: 1.0
species: 564598

269554
type: SpeciesReference
stoichiometry: 1.0
species: 564502

269590
type: SpeciesReference
stoichiometry: 1.0
species: 564408

269578
type: SpeciesReference
stoichiometry: 1.0
species: 564402

269542
type: SpeciesReference
stoichiometry: 1.0
species: 564826

564826
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Chorismate

269602
type: SpeciesReference
stoichiometry: 1.0
species: 564535

570698
type: LocalParameter
value: 0.0

570696
type: LocalParameter
value: 0.0

570695
type: LocalParameter
value: 1000.0

570694
type: LocalParameter
value: 0.0

568019
type: Reaction
product: 298500
reversible: true
name: pyridoxal kinase
notes: GPR_ASSOCIATION: RSP_1920 GENE_LIST: RSP_1920; SUBSYSTEM: Vitamin B6 metabolism Equation: ATP + Pyridoxal <=> ADP + Pyridoxal phosphate + H+ Confidence Level: 2
reactant: 298474
product: 298513
kinetic law: 298525
reactant: 298461
product: 298487
fast: false

298500
type: SpeciesReference
stoichiometry: 1.0
species: 564390

298474
type: SpeciesReference
stoichiometry: 1.0
species: 564823

564823
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Pyridoxal

298513
type: SpeciesReference
stoichiometry: 1.0
species: 564535

573401
type: LocalParameter
value: 0.0

573399
type: LocalParameter
value: 0.0

573398
type: LocalParameter
value: 1000.0

573396
type: LocalParameter
value: -1000.0

298461
type: SpeciesReference
stoichiometry: 1.0
species: 564348

298487
type: SpeciesReference
stoichiometry: 1.0
species: 564366

567641
type: Reaction
kinetic law: 273755
product: 273743
reactant: 273731
notes: GPR_ASSOCIATION: RSP_0276 GENE_LIST: RSP_0276; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Isopentenyl diphosphate <=> Dimethylallyl diphosphate Confidence Level: 2
fast: false
reversible: true
name: isopentenyl-diphosphate delta-isomerase

570999
type: LocalParameter
value: 0.0

570997
type: LocalParameter
value: 0.0

570996
type: LocalParameter
value: 1000.0

570995
type: LocalParameter
value: -1000.0

273743
type: SpeciesReference
stoichiometry: 1.0
species: 564814

273731
type: SpeciesReference
stoichiometry: 1.0
species: 564646

567212
type: Reaction
fast: false
product: 251344
reactant: 251319
reactant: 251307
name: thiolase
product: 251332
kinetic law: 251356
reversible: true
notes: GPR_ASSOCIATION: RSP_1354 or RSP_3184 or RSP_0745 or RSP_2197 or RSP_3536 GENE_LIST: RSP_1354; RSP_3184; RSP_0745; RSP_2197; RSP_3536; SUBSYSTEM: Fatty acid metabolism Equation: Acetyl-CoA + Butanoyl-CoA <=> CoA + 3-Oxohexanoyl-CoA Confidence Level: 2

251344
type: SpeciesReference
stoichiometry: 1.0
species: 565786

251319
type: SpeciesReference
stoichiometry: 1.0
species: 565859

565859
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Butanoyl-CoA

251307
type: SpeciesReference
stoichiometry: 1.0
species: 564405

251332
type: SpeciesReference
stoichiometry: 1.0
species: 564372

569397
type: LocalParameter
value: 0.0

569396
type: LocalParameter
value: 0.0

569395
type: LocalParameter
value: 1000.0

569394
type: LocalParameter
value: -1000.0

567198
type: Reaction
kinetic law: 250885
product: 250872
reactant: 250860
reactant: 250848
notes: GPR_ASSOCIATION: RSP_2712 GENE_LIST: RSP_2712; SUBSYSTEM: Fatty acid biosynthesis Equation: But-2-enoyl-[acyl-carrier protein] + H2O <=> (3R)-3-Hydroxybutanoyl-[acyl-carrier protein] Confidence Level: 2
fast: false
reversible: true
name: enoyl-ACP dehydratase

569360
type: LocalParameter
value: 0.0

569359
type: LocalParameter
value: 0.0

569358
type: LocalParameter
value: 1000.0

569357
type: LocalParameter
value: -1000.0

250872
type: SpeciesReference
stoichiometry: 1.0
species: 566420

566420
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (3R)-3-Hydroxybutanoyl-[acyl-carrierprotein]

250860
type: SpeciesReference
stoichiometry: 1.0
species: 564345

250848
type: SpeciesReference
stoichiometry: 1.0
species: 566418

566418
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: But-2-enoyl-[acyl-carrierprotein]

567731
type: Reaction
notes: GPR_ASSOCIATION: RSP_0709 GENE_LIST: RSP_0709; SUBSYSTEM: Purine metabolism Equation: 2',3'-Cyclic AMP + H2O <=> 3'-AMP + H+ Confidence Level: 2
reversible: true
reactant: 279877
reactant: 279865
product: 279901
kinetic law: 279913
name: 2,3-cyclic-nucleotide 2-phosphodiesterase
fast: false
product: 279889

279877
type: SpeciesReference
stoichiometry: 1.0
species: 564345

279865
type: SpeciesReference
stoichiometry: 1.0
species: 566450

566450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2',3'-CyclicAMP

279901
type: SpeciesReference
stoichiometry: 1.0
species: 564535

571470
type: LocalParameter
value: 0.0

571469
type: LocalParameter
value: 0.0

571467
type: LocalParameter
value: 1000.0

571466
type: LocalParameter
value: -1000.0

279889
type: SpeciesReference
stoichiometry: 1.0
species: 566239

567302
type: Reaction
fast: false
notes: GPR_ASSOCIATION: RSP_0721 GENE_LIST: RSP_0721; SUBSYSTEM: Glycerophospholipid metabolism Equation: S-Adenosyl-L-methionine + Phosphatidylethanolamine <=> S-Adenosyl-L-homocysteine + Phosphatidyl-N-methylethanolamine Confidence Level: 4
product: 255309
reactant: 255297
kinetic law: 255334
reactant: 255285
product: 255321
name: phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase
reversible: true

255309
type: SpeciesReference
stoichiometry: 1.0
species: 564399

255297
type: SpeciesReference
stoichiometry: 1.0
species: 564928

569655
type: LocalParameter
value: 0.0

569654
type: LocalParameter
value: 0.0

569653
type: LocalParameter
value: 1000.0

569652
type: LocalParameter
value: -1000.0

255285
type: SpeciesReference
stoichiometry: 1.0
species: 564393

255321
type: SpeciesReference
stoichiometry: 1.0
species: 565325

568348
type: Reaction
kinetic law: 317868
product: 317856
reactant: 317844
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: 4-Aminobutyraldehyde[e] <=> Confidence Level:
fast: false
reversible: false
name: 4-Aminobutyraldehyde exchange

575215
type: LocalParameter
value: 0.0

575214
type: LocalParameter
value: 0.0

575212
type: LocalParameter
value: 1000.0

575211
type: LocalParameter
value: 0.0

317856
type: SpeciesReference
stoichiometry: 1.0
species: 566855

566855
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Aminobutyraldehyde[e]

317844
type: SpeciesReference
stoichiometry: 1.0
species: 566854

566854
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 4-Aminobutyraldehyde[e]

567809
type: Reaction
notes: GPR_ASSOCIATION: RSP_0948 GENE_LIST: RSP_0948; SUBSYSTEM: Starch and sucrose metabolism Equation: UDP-glucose + D-Glucose 6-phosphate <=> UDP + alpha,alpha'-Trehalose Confidence Level: 2
product: 285152
product: 285128
reactant: 285104
kinetic law: 285164
name: OtsA trehalose-6-phosphate synthase
reactant: 285116
product: 285140
fast: false
reversible: true

285152
type: SpeciesReference
stoichiometry: 1.0
species: 564535

285128
type: SpeciesReference
stoichiometry: 1.0
species: 564384

285104
type: SpeciesReference
stoichiometry: 1.0
species: 564421

572240
type: LocalParameter
value: 0.0

572238
type: LocalParameter
value: 0.0

572237
type: LocalParameter
value: 1000.0

572235
type: LocalParameter
value: -1000.0

285116
type: SpeciesReference
stoichiometry: 1.0
species: 564562

285140
type: SpeciesReference
stoichiometry: 1.0
species: 565123

565123
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: alpha,alpha'-Trehalose6-phosphate

567219
type: Reaction
reactant: 251611
product: 251635
name: thiolase
reversible: true
fast: false
product: 251647
notes: GPR_ASSOCIATION: RSP_3536 GENE_LIST: RSP_3536; SUBSYSTEM: Fatty acid metabolism Equation: Tetradecanoyl-CoA + Acetyl-CoA <=> CoA + 3-Oxohexadecanoyl-CoA Confidence Level: 2
kinetic law: 251660
reactant: 251623

251611
type: SpeciesReference
stoichiometry: 1.0
species: 566352

566352
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Tetradecanoyl-CoA

251635
type: SpeciesReference
stoichiometry: 1.0
species: 564372

251647
type: SpeciesReference
stoichiometry: 1.0
species: 565616

565616
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxopalmitoyl-CoA

569417
type: LocalParameter
value: 0.0

569416
type: LocalParameter
value: 0.0

569415
type: LocalParameter
value: 1000.0

569414
type: LocalParameter
value: -1000.0

251623
type: SpeciesReference
stoichiometry: 1.0
species: 564405

567441
type: Reaction
kinetic law: 261730
product: 261718
reactant: 261706
notes: GPR_ASSOCIATION: RSP_0936 GENE_LIST: RSP_0936; SUBSYSTEM: Lysine biosynthesis Equation: LL-2,6-Diaminoheptanedioate <=> meso-2,6-Diaminoheptanedioate Confidence Level: 2
fast: false
reversible: true
name: diaminopimelate epimerase

570126
type: LocalParameter
value: 0.0

570125
type: LocalParameter
value: 0.0

570124
type: LocalParameter
value: 1000.0

570123
type: LocalParameter
value: -1000.0

261718
type: SpeciesReference
stoichiometry: 1.0
species: 565108

565108
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: meso-2,6-Diaminoheptanedioate

261706
type: SpeciesReference
stoichiometry: 1.0
species: 565090

565090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: LL-2,6-Diaminoheptanedioate

565367
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Ala)

565241
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: O-Phospho-L-serine

566678
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Aspartate[e]

566204
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Mn2[e]

568077
type: Reaction
kinetic law: 301993
product: 301981
reactant: 301969
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Formaldehyde[e] <=> Formaldehyde[p] Confidence Level: 2
fast: false
reversible: true
name: Formaldehyde transport via diffusion

573719
type: LocalParameter
value: 0.0

573718
type: LocalParameter
value: 0.0

573716
type: LocalParameter
value: 1000.0

573715
type: LocalParameter
value: -1000.0

301981
type: SpeciesReference
stoichiometry: 1.0
species: 566544

566544
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Formaldehyde[p]

301969
type: SpeciesReference
stoichiometry: 1.0
species: 566545

566545
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Formaldehyde[e]

567270
type: Reaction
kinetic law: 253962
notes: GPR_ASSOCIATION: RSP_0661 GENE_LIST: RSP_0661; SUBSYSTEM: Folate biosynthesis Equation: 5,10-Methenyltetrahydrofolate + H2O <=> 10-Formyltetrahydrofolate + H+ Confidence Level: 2
reactant: 253924
product: 253950
name: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
reactant: 253912
product: 253937
reversible: true
fast: false

569565
type: LocalParameter
value: 0.0

569564
type: LocalParameter
value: 0.0

569563
type: LocalParameter
value: 1000.0

569562
type: LocalParameter
value: -1000.0

253924
type: SpeciesReference
stoichiometry: 1.0
species: 564345

253950
type: SpeciesReference
stoichiometry: 1.0
species: 564535

253912
type: SpeciesReference
stoichiometry: 1.0
species: 565006

253937
type: SpeciesReference
stoichiometry: 1.0
species: 564811

568234
type: Reaction
fast: false
reactant: 309391
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Acetamide[p] + H+[p] <=> Acetamide + H+ Confidence Level: 1
product: 309415
reactant: 309379
product: 309403
reversible: true
kinetic law: 309427
name: Acetamide via proton symport

309391
type: SpeciesReference
stoichiometry: 1.0
species: 566248

309415
type: SpeciesReference
stoichiometry: 1.0
species: 564535

309379
type: SpeciesReference
stoichiometry: 1.0
species: 566746

566746
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Acetamide[p]

309403
type: SpeciesReference
stoichiometry: 1.0
species: 565822

565822
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetamide

574577
type: LocalParameter
value: 0.0

574575
type: LocalParameter
value: 0.0

574574
type: LocalParameter
value: 1000.0

574572
type: LocalParameter
value: -1000.0

567355
type: Reaction
reactant: 257451
name: choline dehydrogenase
product: 257489
kinetic law: 257501
reversible: true
fast: false
reactant: 257464
notes: GPR_ASSOCIATION: RSP_2184 GENE_LIST: RSP_2184; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: Choline + FAD <=> Betaine aldehyde + FADH2 Confidence Level: 2
product: 257476

257451
type: SpeciesReference
stoichiometry: 1.0
species: 564610

257489
type: SpeciesReference
stoichiometry: 1.0
species: 565352

569814
type: LocalParameter
value: 0.0

569813
type: LocalParameter
value: 0.0

569812
type: LocalParameter
value: 1000.0

569810
type: LocalParameter
value: -1000.0

257464
type: SpeciesReference
stoichiometry: 1.0
species: 564387

257476
type: SpeciesReference
stoichiometry: 1.0
species: 565057

565057
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Betainealdehyde

566542
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Formate[e]

568319
type: Reaction
kinetic law: 315311
product: 315299
reactant: 315287
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 5-Methylcytosine[e] <=> 5-Methylcytosine[p] Confidence Level: 2
fast: false
reversible: true
name: 5-Methylcytosine transport via diffusion

575056
type: LocalParameter
value: 0.0

575054
type: LocalParameter
value: 0.0

575053
type: LocalParameter
value: 1000.0

575051
type: LocalParameter
value: -1000.0

315299
type: SpeciesReference
stoichiometry: 1.0
species: 566832

566832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 5-Methylcytosine[p]

315287
type: SpeciesReference
stoichiometry: 1.0
species: 566834

566834
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 5-Methylcytosine[e]

567360
type: Reaction
kinetic law: 257803
product: 257791
product: 257779
reactant: 257767
notes: GPR_ASSOCIATION: RSP_0361 or RSP_2252 GENE_LIST: RSP_0361; RSP_2252; SUBSYSTEM: Glycine, serine and threonine metabolism Equation: L-Serine <=> Pyruvate + NH3 Confidence Level: 2
fast: false
reversible: false
name: L-serine ammonia-lyase

569841
type: LocalParameter
value: 0.0

569840
type: LocalParameter
value: 0.0

569839
type: LocalParameter
value: 1000.0

569837
type: LocalParameter
value: 0.0

257791
type: SpeciesReference
stoichiometry: 1.0
species: 564381

257779
type: SpeciesReference
stoichiometry: 1.0
species: 564402

257767
type: SpeciesReference
stoichiometry: 1.0
species: 564505

566497
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (2S)-Ethylmalonyl-CoA

566314
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3'-CMP[e]

568044
type: Reaction
kinetic law: 300254
product: 300242
reactant: 300230
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Nickel[e] <=> Nickel[p] Confidence Level: 2
fast: false
reversible: true
name: Nickel transport via diffusion

573538
type: LocalParameter
value: 0.0

573537
type: LocalParameter
value: 0.0

573535
type: LocalParameter
value: 1000.0

573534
type: LocalParameter
value: -1000.0

300242
type: SpeciesReference
stoichiometry: 1.0
species: 566508

300230
type: SpeciesReference
stoichiometry: 1.0
species: 566509

566509
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nickel[e]

568134
type: Reaction
kinetic law: 304503
product: 304490
reactant: 304478
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Xanthine[e] <=> Confidence Level:
fast: false
reversible: false
name: Xanthine exchange

574027
type: LocalParameter
value: 0.0

574026
type: LocalParameter
value: 0.0

574024
type: LocalParameter
value: 1000.0

574023
type: LocalParameter
value: 0.0

304490
type: SpeciesReference
stoichiometry: 1.0
species: 566622

566622
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Xanthine[e]

304478
type: SpeciesReference
stoichiometry: 1.0
species: 566621

566621
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Xanthine[e]

566710
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Ribitol[e]

565846
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Adenosylcobinamidephosphate

567633
type: Reaction
reactant: 273137
product: 273173
notes: GPR_ASSOCIATION: RSP_0789 GENE_LIST: RSP_0789; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole + H2O <=> alpha-Ribazole + Orthophosphate Confidence Level: 2
kinetic law: 273185
fast: false
product: 273161
reversible: false
reactant: 273149

273137
type: SpeciesReference
stoichiometry: 1.0
species: 565754

565754
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole

273173
type: SpeciesReference
stoichiometry: 1.0
species: 564369

570956
type: LocalParameter
value: 0.0

570954
type: LocalParameter
value: 0.0

570953
type: LocalParameter
value: 1000.0

570952
type: LocalParameter
value: 0.0

273161
type: SpeciesReference
stoichiometry: 1.0
species: 565805

273149
type: SpeciesReference
stoichiometry: 1.0
species: 564345

567533
type: Reaction
product: 266622
name: ribitol 2-dehydrogenase
fast: false
reversible: true
product: 266610
kinetic law: 266646
product: 266634
notes: GPR_ASSOCIATION: RSP_3704 GENE_LIST: RSP_3704; SUBSYSTEM: Pentose and glucuronate interconversions Equation: Xylitol + NAD+ <=> D-xylulose + NADH + H+ Confidence Level: 4
reactant: 266598
reactant: 266586

266622
type: SpeciesReference
stoichiometry: 1.0
species: 564354

266610
type: SpeciesReference
stoichiometry: 1.0
species: 564889

570462
type: LocalParameter
value: 0.0

570460
type: LocalParameter
value: 0.0

570459
type: LocalParameter
value: 1000.0

570458
type: LocalParameter
value: -1000.0

266634
type: SpeciesReference
stoichiometry: 1.0
species: 564535

266598
type: SpeciesReference
stoichiometry: 1.0
species: 564351

266586
type: SpeciesReference
stoichiometry: 1.0
species: 566490

567036
type: Reaction
kinetic law: 244657
product: 244644
product: 244632
reactant: 244620
notes: GPR_ASSOCIATION: RSP_2138 GENE_LIST: RSP_2138; SUBSYSTEM: Citrate cycle (TCA cycle) Equation: (S)-Malate <=> Fumarate + H2O Confidence Level: 2
fast: false
reversible: true
name: fumarate hydratase

568880
type: LocalParameter
value: 0.0

568879
type: LocalParameter
value: 0.0

568878
type: LocalParameter
value: 1000.0

568877
type: LocalParameter
value: -1000.0

244644
type: SpeciesReference
stoichiometry: 1.0
species: 564345

244632
type: SpeciesReference
stoichiometry: 1.0
species: 564631

564631
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Fumarate

244620
type: SpeciesReference
stoichiometry: 1.0
species: 564685

565634
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Dehydro-4-deoxy-D-glucuronate

568200
type: Reaction
kinetic law: 307752
product: 307739
reactant: 307727
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Ribitol[e] <=> Confidence Level:
fast: false
reversible: false
name: Ribitol exchange

574390
type: LocalParameter
value: 0.0

574389
type: LocalParameter
value: 0.0

574387
type: LocalParameter
value: 1000.0

574386
type: LocalParameter
value: 0.0

307739
type: SpeciesReference
stoichiometry: 1.0
species: 566710

307727
type: SpeciesReference
stoichiometry: 1.0
species: 566709

567861
type: Reaction
fast: false
reversible: false
product: 289055
product: 289019
product: 289043
kinetic law: 289067
product: 289031
reactant: 289007
name: ABC D-Alanyl-D-alanine transporter
notes: GPR_ASSOCIATION: (RSP_0804 and RSP_0805 and RSP_0806 and RSP_0807) or (RSP_0803 and RSP_0805 and RSP_0806 and RSP_0807) or (RSP_1451 and RSP_1452 and RSP_1453 and RSP_1454) or (RSP_3524 and RSP_3523 and RSP_3522 and RSP_3520) or (RSP_3525 and RSP_3523 and RSP_3522 and RSP_3520) or (RSP_3248 and RSP_3249 and RSP_3250 and RSP_3251) or (RSP_3255 and RSP_3257 and RSP_3258 and RSP_3252) or (RSP_0704 and RSP_0703 and RSP_0702 and RSP_0701) or (RSP_3231 and RSP_3232 and RSP_3235 and RSP_3236) or (RSP_3231 and RSP_3232 and RSP_3235 and RSP_3235) or (RSP_2702 and RSP_2700 and RSP_2701 and RSP_2703) GENE_LIST: RSP_0804; RSP_0805; RSP_0806; RSP_0807; RSP_0803; RSP_0805; RSP_0806; RSP_0807; RSP_1451; RSP_1452; RSP_1453; RSP_1454; RSP_3524; RSP_3523; RSP_3522; RSP_3520; RSP_3525; RSP_3523; RSP_3522; RSP_3520; RSP_3248; RSP_3249; RSP_3250; RSP_3251; RSP_3255; RSP_3257; RSP_3258; RSP_3252; RSP_0704; RSP_0703; RSP_0702; RSP_0701; RSP_3231; RSP_3232; RSP_3235; RSP_3236; RSP_3231; RSP_3232; RSP_3235; RSP_3235; RSP_2702; RSP_2700; RSP_2701; RSP_2703; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine[p] <=> ADP + H+ + Orthophosphate + L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine Confidence Level: 3
reactant: 288983
reactant: 288995

289055
type: SpeciesReference
stoichiometry: 1.0
species: 565238

289019
type: SpeciesReference
stoichiometry: 1.0
species: 564366

289043
type: SpeciesReference
stoichiometry: 1.0
species: 564369

572524
type: LocalParameter
value: 0.0

572523
type: LocalParameter
value: 0.0

572521
type: LocalParameter
value: 1000.0

572520
type: LocalParameter
value: 0.0

289031
type: SpeciesReference
stoichiometry: 1.0
species: 564535

289007
type: SpeciesReference
stoichiometry: 1.0
species: 566164

288983
type: SpeciesReference
stoichiometry: 1.0
species: 564348

288995
type: SpeciesReference
stoichiometry: 1.0
species: 564345

566658
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Nitrate[e]

566962
type: Reaction
reversible: true
name: pyrroline-5-carboxylate reductase
reactant: 240913
product: 240951
product: 240938
kinetic law: 240975
notes: GPR_ASSOCIATION: RSP_3364 GENE_LIST: RSP_3364; SUBSYSTEM: Arginine and proline metabolism Equation: L-Proline + NAD+ <=> (S)-1-Pyrroline-5-carboxylate + NADH + H+ Confidence Level: 2
reactant: 240926
fast: false
product: 240963

240913
type: SpeciesReference
stoichiometry: 1.0
species: 564682

240951
type: SpeciesReference
stoichiometry: 1.0
species: 564354

240938
type: SpeciesReference
stoichiometry: 1.0
species: 565625

565625
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-1-Pyrroline-5-carboxylate

568656
type: LocalParameter
value: 0.0

568655
type: LocalParameter
value: 0.0

568654
type: LocalParameter
value: 1000.0

568653
type: LocalParameter
value: -1000.0

240926
type: SpeciesReference
stoichiometry: 1.0
species: 564351

240963
type: SpeciesReference
stoichiometry: 2.0
species: 564535

567519
type: Reaction
kinetic law: 266041
product: 266029
reactant: 266017
notes: GPR_ASSOCIATION: RSP_0488 GENE_LIST: RSP_0488; SUBSYSTEM: Pentose and glucuronate interconversions Equation: D-Glucuronate <=> D-Fructuronate Confidence Level: 2
fast: false
reversible: true
name: glucuronate isomerase

570412
type: LocalParameter
value: 0.0

570410
type: LocalParameter
value: 0.0

570409
type: LocalParameter
value: 1000.0

570408
type: LocalParameter
value: -1000.0

266029
type: SpeciesReference
stoichiometry: 1.0
species: 565217

266017
type: SpeciesReference
stoichiometry: 1.0
species: 564751

564655
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Methanol

568207
type: Reaction
kinetic law: 308054
product: 308042
reactant: 308029
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 2-Oxoglutarate[e] <=> 2-Oxoglutarate[p] Confidence Level: 2
fast: false
reversible: true
name: 2-Oxoglutarate transport via diffusion

574429
type: LocalParameter
value: 0.0

574427
type: LocalParameter
value: 0.0

574426
type: LocalParameter
value: 1000.0

574424
type: LocalParameter
value: -1000.0

308042
type: SpeciesReference
stoichiometry: 1.0
species: 566715

566715
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: 2-Oxoglutarate[p]

308029
type: SpeciesReference
stoichiometry: 1.0
species: 566716

567770
type: Reaction
reactant: 282377
notes: GPR_ASSOCIATION: RSP_0183 or RSP_3462 GENE_LIST: RSP_0183; RSP_3462; SUBSYSTEM: Pyrimidine metabolism Equation: 5,6-Dihydrouracil + H2O <=> 3-Ureidopropionate + H+ Confidence Level: 2
reactant: 282365
reversible: true
name: phenylhydantoinase
kinetic law: 282414
product: 282389
product: 282401
fast: false

282377
type: SpeciesReference
stoichiometry: 1.0
species: 564345

282365
type: SpeciesReference
stoichiometry: 1.0
species: 564985

571665
type: LocalParameter
value: 0.0

571664
type: LocalParameter
value: 0.0

571662
type: LocalParameter
value: 1000.0

571661
type: LocalParameter
value: -1000.0

282389
type: SpeciesReference
stoichiometry: 1.0
species: 565475

282401
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567967
type: Reaction
kinetic law: 295311
product: 295299
reactant: 295287
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: 3'-UMP[e] <=> 3'-UMP[p] Confidence Level: 2
fast: false
reversible: true
name: 3'-UMP transport via diffusion

573111
type: LocalParameter
value: 0.0

573109
type: LocalParameter
value: 0.0

573108
type: LocalParameter
value: 1000.0

573106
type: LocalParameter
value: -1000.0

295299
type: SpeciesReference
stoichiometry: 1.0
species: 566304

295287
type: SpeciesReference
stoichiometry: 1.0
species: 566306

566306
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3'-UMP[e]

567995
type: Reaction
product: 296884
reversible: true
reactant: 296872
reactant: 296860
fast: false
name: branched-chain amino acid aminotransferase
product: 296896
notes: GPR_ASSOCIATION: RSP_1140 or RSP_2216 or RSP_1215 GENE_LIST: RSP_1140; RSP_2216; RSP_1215; SUBSYSTEM: Valine, leucine and isoleucine biosynthesis Equation: L-Isoleucine + 2-Oxoglutarate <=> (S)-3-Methyl-2-oxopentanoic acid + L-Glutamate Confidence Level: 2
kinetic law: 296908

296884
type: SpeciesReference
stoichiometry: 1.0
species: 565099

565099
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Methyl-2-oxopentanoicacid

296872
type: SpeciesReference
stoichiometry: 1.0
species: 564411

296860
type: SpeciesReference
stoichiometry: 1.0
species: 564970

296896
type: SpeciesReference
stoichiometry: 1.0
species: 564408

573269
type: LocalParameter
value: 0.0

573267
type: LocalParameter
value: 0.0

573266
type: LocalParameter
value: 1000.0

573264
type: LocalParameter
value: -1000.0

566766
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Biotin[p]

568036
type: Reaction
notes: GPR_ASSOCIATION: RSP_0312 GENE_LIST: RSP_0312; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: L-Alanine + Glyoxylate <=> Pyruvate + Glycine Confidence Level: 2
reactant: 299724
fast: false
reactant: 299712
product: 299736
kinetic law: 299760
name: aminotransferase
reversible: true
product: 299748

299724
type: SpeciesReference
stoichiometry: 1.0
species: 564463

299712
type: SpeciesReference
stoichiometry: 1.0
species: 564445

299736
type: SpeciesReference
stoichiometry: 1.0
species: 564402

573494
type: LocalParameter
value: 0.0

573493
type: LocalParameter
value: 0.0

573491
type: LocalParameter
value: 1000.0

573490
type: LocalParameter
value: -1000.0

299748
type: SpeciesReference
stoichiometry: 1.0
species: 564436

567684
type: Reaction
reversible: true
product: 276767
product: 276779
reactant: 276743
name: adenine phosphoribosyltransferase
reactant: 276755
kinetic law: 276792
fast: false
notes: GPR_ASSOCIATION: RSP_1836 or RSP_2786 or RSP_2342 GENE_LIST: RSP_1836; RSP_2786; RSP_2342; SUBSYSTEM: Purine metabolism Equation: GMP + Diphosphate <=> Guanine + 5-Phospho-alpha-D-ribose 1-diphosphate Confidence Level: 2

276767
type: SpeciesReference
stoichiometry: 1.0
species: 564820

276779
type: SpeciesReference
stoichiometry: 1.0
species: 564622

276743
type: SpeciesReference
stoichiometry: 1.0
species: 564676

276755
type: SpeciesReference
stoichiometry: 1.0
species: 564378

571223
type: LocalParameter
value: 0.0

571221
type: LocalParameter
value: 0.0

571220
type: LocalParameter
value: 1000.0

571219
type: LocalParameter
value: -1000.0

568126
type: Reaction
product: 304176
name: Riboflavin via Na+ symport
kinetic law: 304200
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Transport, inner membrane Equation: Riboflavin[p] + Sodium[p] <=> Riboflavin + Sodium Confidence Level: 1
fast: false
reversible: false
product: 304188
reactant: 304164
reactant: 304152

304176
type: SpeciesReference
stoichiometry: 1.0
species: 564835

573989
type: LocalParameter
value: 0.0

573987
type: LocalParameter
value: 0.0

573986
type: LocalParameter
value: 1000.0

573984
type: LocalParameter
value: 0.0

304188
type: SpeciesReference
stoichiometry: 1.0
species: 566254

304164
type: SpeciesReference
stoichiometry: 1.0
species: 566255

304152
type: SpeciesReference
stoichiometry: 1.0
species: 566612

566612
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Riboflavin[p]

567070
type: Reaction
kinetic law: 246115
product: 246103
reactant: 246091
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: L-isoleucine[e] <=> Confidence Level:
fast: false
reversible: false
name: L-isoleucine exchange

568978
type: LocalParameter
value: 0.0

568977
type: LocalParameter
value: 0.0

568976
type: LocalParameter
value: 1000.0

568975
type: LocalParameter
value: 0.0

246103
type: SpeciesReference
stoichiometry: 1.0
species: 566155

246091
type: SpeciesReference
stoichiometry: 1.0
species: 566154

566927
type: Reaction
reactant: 238873
kinetic law: 238945
name: alanyl-tRNA synthetase
reactant: 238885
fast: false
product: 238933
product: 238921
notes: GPR_ASSOCIATION: RSP_0451 and (RSP_4325 or RSP_4330 or RSP_4339 or RSP_4349 or RSP_4354) GENE_LIST: RSP_0451; RSP_4325; RSP_4330; RSP_4339; RSP_4349; RSP_4354; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Alanine + tRNA(Ala) <=> AMP + Diphosphate + L-Alanyl-tRNA Confidence Level: 2
product: 238909
reactant: 238897
reversible: false

238873
type: SpeciesReference
stoichiometry: 1.0
species: 564348

568543
type: LocalParameter
value: 0.0

568542
type: LocalParameter
value: 0.0

568541
type: LocalParameter
value: 1000.0

568540
type: LocalParameter
value: 0.0

238885
type: SpeciesReference
stoichiometry: 1.0
species: 564445

238933
type: SpeciesReference
stoichiometry: 1.0
species: 565208

565208
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Alanyl-tRNA

238921
type: SpeciesReference
stoichiometry: 1.0
species: 564378

238909
type: SpeciesReference
stoichiometry: 1.0
species: 564396

238897
type: SpeciesReference
stoichiometry: 1.0
species: 565367

566793
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hexadecenoyl-[acyl-carrierprotein]

567819
type: Reaction
product: 285719
kinetic law: 285732
reactant: 285695
product: 285707
reactant: 285683
reactant: 285671
notes: GPR_ASSOCIATION: RSP_0965 GENE_LIST: RSP_0965; SUBSYSTEM: Succinate metabolism Equation: 3-Carboxy-1-hydroxypropyl-ThPP + Enzyme N6-(lipoyl)lysine + 2H+ <=> [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine + Thiamin diphosphate Confidence Level: 2
fast: false
name: 2-oxoglutarate dehydrogenase E1 component
reversible: false

285719
type: SpeciesReference
stoichiometry: 1.0
species: 564511

572294
type: LocalParameter
value: 0.0

572292
type: LocalParameter
value: 0.0

572291
type: LocalParameter
value: 1000.0

572289
type: LocalParameter
value: 0.0

285695
type: SpeciesReference
stoichiometry: 2.0
species: 564535

285707
type: SpeciesReference
stoichiometry: 1.0
species: 565885

285683
type: SpeciesReference
stoichiometry: 1.0
species: 565876

285671
type: SpeciesReference
stoichiometry: 1.0
species: 565796

565796
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Carboxy-1-hydroxypropyl-ThPP

566932
type: Reaction
name: seryl-tRNA synthetase
product: 239257
reversible: false
reactant: 239221
kinetic law: 239281
fast: false
reactant: 239233
reactant: 239209
product: 239245
notes: GPR_ASSOCIATION: RSP_1795 and (RSP_4302 or RSP_4306 or RSP_4308 or RSP_4318) GENE_LIST: RSP_1795; RSP_4302; RSP_4306; RSP_4308; RSP_4318; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Serine + tRNA(Ser) <=> AMP + Diphosphate + L-Seryl-tRNA(Ser) Confidence Level: 2
product: 239269

239257
type: SpeciesReference
stoichiometry: 1.0
species: 564378

239221
type: SpeciesReference
stoichiometry: 1.0
species: 564505

568559
type: LocalParameter
value: 0.0

568558
type: LocalParameter
value: 0.0

568557
type: LocalParameter
value: 1000.0

568556
type: LocalParameter
value: 0.0

239233
type: SpeciesReference
stoichiometry: 1.0
species: 565406

239209
type: SpeciesReference
stoichiometry: 1.0
species: 564348

239245
type: SpeciesReference
stoichiometry: 1.0
species: 564396

239269
type: SpeciesReference
stoichiometry: 1.0
species: 565460

565460
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Seryl-tRNA(Ser)

567077
type: Reaction
kinetic law: 246297
product: 246285
reactant: 246273
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Glutathione disulfide[e] <=> Confidence Level:
fast: false
reversible: false
name: Glutathione disulfide exchange

568998
type: LocalParameter
value: 0.0

568997
type: LocalParameter
value: 0.0

568996
type: LocalParameter
value: 1000.0

568995
type: LocalParameter
value: 0.0

246285
type: SpeciesReference
stoichiometry: 1.0
species: 566180

566180
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glutathionedisulfide[e]

246273
type: SpeciesReference
stoichiometry: 1.0
species: 566179

567610
type: Reaction
kinetic law: 271430
product: 271418
reactant: 271406
notes: GPR_ASSOCIATION: RSP_1569 GENE_LIST: RSP_1569; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 5-Aminolevulinate <=> (S)-4-Amino-5-oxopentanoate Confidence Level: 2
fast: false
reversible: true
name: aminotransferase

570837
type: LocalParameter
value: 0.0

570835
type: LocalParameter
value: 0.0

570834
type: LocalParameter
value: 1000.0

570833
type: LocalParameter
value: -1000.0

271418
type: SpeciesReference
stoichiometry: 1.0
species: 565604

271406
type: SpeciesReference
stoichiometry: 1.0
species: 564988

568173
type: Reaction
kinetic law: 306351
product: 306339
reactant: 306327
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: L-Cysteate[e] <=> L-Cysteate[p] Confidence Level: 2
fast: false
reversible: true
name: L-Cysteate transport via diffusion

574242
type: LocalParameter
value: 0.0

574240
type: LocalParameter
value: 0.0

574239
type: LocalParameter
value: 1000.0

574237
type: LocalParameter
value: -1000.0

306339
type: SpeciesReference
stoichiometry: 1.0
species: 566672

306327
type: SpeciesReference
stoichiometry: 1.0
species: 566673

566939
type: Reaction
product: 239668
product: 239680
product: 239656
name: leucyl-tRNA synthetase
reversible: false
notes: GPR_ASSOCIATION: RSP_0840 and (RSP_4301 or RSP_4321 or RSP_4332 or RSP_4338) GENE_LIST: RSP_0840; RSP_4301; RSP_4321; RSP_4332; RSP_4338; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Leucine + tRNA(Leu) <=> AMP + Diphosphate + L-Leucyl-tRNA(Leu) Confidence Level: 2
fast: false
kinetic law: 239692
reactant: 239632
reactant: 239644
reactant: 239620

239668
type: SpeciesReference
stoichiometry: 1.0
species: 564378

239680
type: SpeciesReference
stoichiometry: 1.0
species: 565430

565430
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Leucyl-tRNA

239656
type: SpeciesReference
stoichiometry: 1.0
species: 564396

568579
type: LocalParameter
value: 0.0

568578
type: LocalParameter
value: 0.0

568577
type: LocalParameter
value: 1000.0

568576
type: LocalParameter
value: 0.0

239632
type: SpeciesReference
stoichiometry: 1.0
species: 564634

239644
type: SpeciesReference
stoichiometry: 1.0
species: 565391

565391
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Leu)

239620
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567940
type: Reaction
kinetic law: 294329
product: 294317
reactant: 294305
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Maltose[e] <=> Maltose[p] Confidence Level: 2
fast: false
reversible: true
name: Maltose transport via diffusion

572959
type: LocalParameter
value: 0.0

572957
type: LocalParameter
value: 0.0

572956
type: LocalParameter
value: 1000.0

572954
type: LocalParameter
value: -1000.0

294317
type: SpeciesReference
stoichiometry: 1.0
species: 566060

566060
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Maltose[p]

294305
type: SpeciesReference
stoichiometry: 1.0
species: 566061

566061
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Maltose[e]

566947
type: Reaction
notes: GPR_ASSOCIATION: RSP_1763 and RSP_1761 and RSP_4333) GENE_LIST: RSP_1763; RSP_1761; RSP_4333; SUBSYSTEM: Aminoacyl-tRNA biosynthesis Equation: ATP + L-Phenylalanine + tRNA(Phe) <=> AMP + Diphosphate + L-Phenylalanyl-tRNA(Phe) Confidence Level: 2
reversible: false
reactant: 240140
product: 240188
name: phenylalanyl-tRNA synthetase
kinetic law: 240200
reactant: 240152
reactant: 240128
fast: false
product: 240164
product: 240176

240140
type: SpeciesReference
stoichiometry: 1.0
species: 564532

564532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Phenylalanine

240188
type: SpeciesReference
stoichiometry: 1.0
species: 565586

565586
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Phenylalanyl-tRNA(Phe)

568603
type: LocalParameter
value: 0.0

568602
type: LocalParameter
value: 0.0

568601
type: LocalParameter
value: 1000.0

568600
type: LocalParameter
value: 0.0

240152
type: SpeciesReference
stoichiometry: 1.0
species: 565400

240128
type: SpeciesReference
stoichiometry: 1.0
species: 564348

240164
type: SpeciesReference
stoichiometry: 1.0
species: 564396

240176
type: SpeciesReference
stoichiometry: 1.0
species: 564378

567043
type: Reaction
notes: GPR_ASSOCIATION: RSP_2124 or RSP_3346 or RSP_3347 or RSP_2768 GENE_LIST: RSP_2124; RSP_3346; RSP_3347; RSP_2768; SUBSYSTEM: Cysteine and methionine metabolism Equation: 5-Methyltetrahydrofolate + L-Homocysteine <=> Tetrahydrofolate + L-Methionine + H+ Confidence Level: 2
product: 245006
product: 244994
kinetic law: 245018
fast: false
name: methionine synthase I
product: 244982
reversible: true
reactant: 244958
reactant: 244970

245006
type: SpeciesReference
stoichiometry: 1.0
species: 564535

244994
type: SpeciesReference
stoichiometry: 1.0
species: 564517

568901
type: LocalParameter
value: 0.0

568900
type: LocalParameter
value: 0.0

568899
type: LocalParameter
value: 1000.0

568898
type: LocalParameter
value: -1000.0

244982
type: SpeciesReference
stoichiometry: 1.0
species: 564586

244958
type: SpeciesReference
stoichiometry: 1.0
species: 565000

565000
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Methyltetrahydrofolate

244970
type: SpeciesReference
stoichiometry: 1.0
species: 564694

566578
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: (S)-Lactate[e]

568087
type: Reaction
reactant: 302415
fast: false
notes: GPR_ASSOCIATION: RSP_3174 GENE_LIST: RSP_3174; SUBSYSTEM: Transport, inner membrane Equation: Uracil[p] + Sodium[p] <=> Uracil + Sodium Confidence Level: 2
name: Uracil via Na+ symport
product: 302451
reversible: false
product: 302439
reactant: 302427
kinetic law: 302463

302415
type: SpeciesReference
stoichiometry: 1.0
species: 566560

566560
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Uracil[p]

302451
type: SpeciesReference
stoichiometry: 1.0
species: 566254

302439
type: SpeciesReference
stoichiometry: 1.0
species: 564595

302427
type: SpeciesReference
stoichiometry: 1.0
species: 566255

573774
type: LocalParameter
value: 0.0

573773
type: LocalParameter
value: 0.0

573771
type: LocalParameter
value: 1000.0

573770
type: LocalParameter
value: 0.0

565226
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Dehydroquinate

565807
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-2-Acetolactate

567853
type: Reaction
kinetic law: 288296
fast: false
product: 288284
reactant: 288212
reactant: 288224
product: 288248
product: 288260
reactant: 288236
reversible: true
notes: GPR_ASSOCIATION: RSP_3871 and RSP_3869 and RSP_3868 GENE_LIST: RSP_3871; RSP_3869; RSP_3868; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + Molybdate[p] <=> ADP + H+ + Orthophosphate + Molybdate Confidence Level: 3
product: 288272
name: ABC molybdate transporter

572480
type: LocalParameter
value: 0.0

572479
type: LocalParameter
value: 0.0

572477
type: LocalParameter
value: 1000.0

572476
type: LocalParameter
value: -1000.0

288284
type: SpeciesReference
stoichiometry: 1.0
species: 566010

566010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Molybdate

288212
type: SpeciesReference
stoichiometry: 1.0
species: 564348

288224
type: SpeciesReference
stoichiometry: 1.0
species: 564345

288248
type: SpeciesReference
stoichiometry: 1.0
species: 564366

288260
type: SpeciesReference
stoichiometry: 1.0
species: 564535

288236
type: SpeciesReference
stoichiometry: 1.0
species: 566026

288272
type: SpeciesReference
stoichiometry: 1.0
species: 564369

567370
type: Reaction
kinetic law: 258287
product: 258251
reactant: 258227
product: 258275
reactant: 258239
fast: false
name: glucokinase
notes: GPR_ASSOCIATION: RSP_2875 GENE_LIST: RSP_2875; SUBSYSTEM: Glycolysis / Gluconeogenesis Equation: ATP + D-Glucose <=> ADP + D-Glucose 6-phosphate + H+ Confidence Level: 2
product: 258263
reversible: true

569874
type: LocalParameter
value: 0.0

569873
type: LocalParameter
value: 0.0

569872
type: LocalParameter
value: 1000.0

569870
type: LocalParameter
value: -1000.0

258251
type: SpeciesReference
stoichiometry: 1.0
species: 564366

258227
type: SpeciesReference
stoichiometry: 1.0
species: 564348

258275
type: SpeciesReference
stoichiometry: 1.0
species: 564535

258239
type: SpeciesReference
stoichiometry: 1.0
species: 564424

564424
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Glucose

258263
type: SpeciesReference
stoichiometry: 1.0
species: 564562

567663
type: Reaction
reactant: 275205
product: 275241
name: methylmalonate-semialdehyde dehydrogenase
reactant: 275229
notes: GPR_ASSOCIATION: RSP_2962 GENE_LIST: RSP_2962; SUBSYSTEM: Propanoate metabolism Equation: (S)-Methylmalonate semialdehyde + CoA + NAD+ <=> Propanoyl-CoA + CO2 + NADH + H+ Confidence Level: 2
product: 275265
kinetic law: 275277
fast: false
reactant: 275217
product: 275253
reversible: false

275205
type: SpeciesReference
stoichiometry: 1.0
species: 566223

566223
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-Methylmalonatesemialdehyde

275241
type: SpeciesReference
stoichiometry: 1.0
species: 564583

275229
type: SpeciesReference
stoichiometry: 1.0
species: 564351

275265
type: SpeciesReference
stoichiometry: 1.0
species: 564354

571115
type: LocalParameter
value: 0.0

571113
type: LocalParameter
value: 0.0

571112
type: LocalParameter
value: 1000.0

571111
type: LocalParameter
value: 0.0

275217
type: SpeciesReference
stoichiometry: 1.0
species: 564372

275253
type: SpeciesReference
stoichiometry: 1.0
species: 564375

565670
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (4S)-4,6-Dihydroxy-2,5-dioxohexanoate

566982
type: Reaction
product: 241956
reactant: 241907
kinetic law: 241992
fast: false
product: 241980
reactant: 241932
reversible: true
notes: GPR_ASSOCIATION: RSP_1923 GENE_LIST: RSP_1923; SUBSYSTEM: Biotin metabolism Equation: Dethiobiotin + Sulfur + 2 S-Adenosyl-L-methionine + 2 H+ <=> Biotin + 2 L-Methionine + 2 5'-Deoxyadenosine Confidence Level: 2
reactant: 241919
reactant: 241944
name: biotin synthase
product: 241968

241956
type: SpeciesReference
stoichiometry: 1.0
species: 564625

241907
type: SpeciesReference
stoichiometry: 1.0
species: 565424

565424
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Dethiobiotin

568716
type: LocalParameter
value: 0.0

568715
type: LocalParameter
value: 0.0

568714
type: LocalParameter
value: 1000.0

568713
type: LocalParameter
value: -1000.0

241980
type: SpeciesReference
stoichiometry: 2.0
species: 565784

241932
type: SpeciesReference
stoichiometry: 2.0
species: 564393

241919
type: SpeciesReference
stoichiometry: 1.0
species: 564553

241944
type: SpeciesReference
stoichiometry: 2.0
species: 564535

241968
type: SpeciesReference
stoichiometry: 2.0
species: 564517

567572
type: Reaction
kinetic law: 268962
reactant: 268914
product: 268950
reversible: false
fast: false
notes: GPR_ASSOCIATION: RSP_1687 or RSP_2196 GENE_LIST: RSP_1687; RSP_2196; SUBSYSTEM: PHB Synthesis Equation: (S)-3-Hydroxybutanoyl-CoA + NAD+ <=> Acetoacetyl-CoA + NADH + H+ Confidence Level: 4
name: 3-hydroxybutyryl-CoA dehydrogenase
reactant: 268902
product: 268938
product: 268926

570641
type: LocalParameter
value: 0.0

570639
type: LocalParameter
value: 0.0

570638
type: LocalParameter
value: 1000.0

570637
type: LocalParameter
value: 0.0

268914
type: SpeciesReference
stoichiometry: 1.0
species: 564351

268950
type: SpeciesReference
stoichiometry: 1.0
species: 564535

268902
type: SpeciesReference
stoichiometry: 1.0
species: 565295

565295
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (S)-3-Hydroxybutanoyl-CoA

268938
type: SpeciesReference
stoichiometry: 1.0
species: 564354

268926
type: SpeciesReference
stoichiometry: 1.0
species: 564904

564904
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetoacetyl-CoA

568008
type: Reaction
reactant: 297692
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Valine, leucine and isoleucine degradation Equation: [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylbutanoyl)dihydrolipoyllysine + CoA <=> 2-Methybutanoyl-CoA + Enzyme N6-(dihydrolipoyl)lysine Confidence Level: 1
product: 297704
product: 297716
fast: false
kinetic law: 297728
reactant: 297680
reversible: true

297692
type: SpeciesReference
stoichiometry: 1.0
species: 564372

297704
type: SpeciesReference
stoichiometry: 1.0
species: 565877

297716
type: SpeciesReference
stoichiometry: 1.0
species: 566363

573340
type: LocalParameter
value: 0.0

573339
type: LocalParameter
value: 0.0

573337
type: LocalParameter
value: 1000.0

573336
type: LocalParameter
value: -1000.0

297680
type: SpeciesReference
stoichiometry: 1.0
species: 566464

567201
type: Reaction
kinetic law: 250982
product: 250970
reactant: 250958
reactant: 250946
notes: GPR_ASSOCIATION: RSP_2712 GENE_LIST: RSP_2712; SUBSYSTEM: Fatty acid biosynthesis Equation: trans-Oct-2-enoyl-[acp] + H2O <=> (3R)-3-Hydroxyoctanoyl-[acyl-carrier protein] Confidence Level: 2
fast: false
reversible: true
name: enoyl-ACP dehydratase

569369
type: LocalParameter
value: 0.0

569368
type: LocalParameter
value: 0.0

569366
type: LocalParameter
value: 1000.0

569365
type: LocalParameter
value: -1000.0

250970
type: SpeciesReference
stoichiometry: 1.0
species: 566421

566421
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (3R)-3-Hydroxyoctanoyl-[acyl-carrierprotein]

250958
type: SpeciesReference
stoichiometry: 1.0
species: 564345

250946
type: SpeciesReference
stoichiometry: 1.0
species: 565906

565906
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Oct-2-enoyl-[acp]

568013
type: Reaction
name: 3-methylcrotonoyl-CoA carboxylase
reactant: 298030
kinetic law: 298102
product: 298090
product: 298078
reversible: true
reactant: 298054
product: 298066
fast: false
notes: GPR_ASSOCIATION: RSP_2509 and RSP_2508 GENE_LIST: RSP_2509; RSP_2508; SUBSYSTEM: Valine, leucine and isoleucine degradation Equation: ATP + 3-Methylcrotonyl-CoA + HCO3- <=> ADP + Orthophosphate + 3-Methylglutaconyl-CoA Confidence Level: 2
reactant: 298042

298030
type: SpeciesReference
stoichiometry: 1.0
species: 564348

573368
type: LocalParameter
value: 0.0

573366
type: LocalParameter
value: 0.0

573365
type: LocalParameter
value: 1000.0

573363
type: LocalParameter
value: -1000.0

298090
type: SpeciesReference
stoichiometry: 1.0
species: 565532

565532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Methylglutaconyl-CoA

298078
type: SpeciesReference
stoichiometry: 1.0
species: 564369

298054
type: SpeciesReference
stoichiometry: 1.0
species: 564871

298066
type: SpeciesReference
stoichiometry: 1.0
species: 564366

298042
type: SpeciesReference
stoichiometry: 1.0
species: 565511

566346
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: trans-Hex-2-enoyl-[acp]

567649
type: Reaction
product: 274444
product: 274420
kinetic law: 274456
notes: GPR_ASSOCIATION: ? GENE_LIST: SUBSYSTEM: Propanoate metabolism Equation: 2-Oxobutanoate + Orthophosphate + 0.5 Oxygen + H+ <=> Propanoyl phosphate + CO2 + H2O Confidence Level: 1
fast: false
reactant: 274396
reactant: 274408
reactant: 274384
reactant: 274372
reversible: false
product: 274432

274444
type: SpeciesReference
stoichiometry: 1.0
species: 564345

274420
type: SpeciesReference
stoichiometry: 1.0
species: 566486

571041
type: LocalParameter
value: 0.0

571039
type: LocalParameter
value: 0.0

571038
type: LocalParameter
value: 1000.0

571037
type: LocalParameter
value: 0.0

274396
type: SpeciesReference
stoichiometry: 0.5
species: 564363

274408
type: SpeciesReference
stoichiometry: 1.0
species: 564535

274384
type: SpeciesReference
stoichiometry: 1.0
species: 564369

274372
type: SpeciesReference
stoichiometry: 1.0
species: 564601

274432
type: SpeciesReference
stoichiometry: 1.0
species: 564375

566831
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Selenide[e]

567739
type: Reaction
product: 280431
product: 280407
reversible: true
fast: false
product: 280419
reactant: 280383
name: thioredoxin reductase
kinetic law: 280443
reactant: 280395
notes: GPR_ASSOCIATION: RSP_1576 GENE_LIST: RSP_1576; SUBSYSTEM: Pyrimidine metabolism Equation: Thioredoxin + NADP+ <=> Thioredoxin disulfide + NADPH + H+ Confidence Level: 4

280431
type: SpeciesReference
stoichiometry: 1.0
species: 564535

280407
type: SpeciesReference
stoichiometry: 1.0
species: 564916

280419
type: SpeciesReference
stoichiometry: 1.0
species: 564357

280383
type: SpeciesReference
stoichiometry: 1.0
species: 564913

571510
type: LocalParameter
value: 0.0

571509
type: LocalParameter
value: 0.0

571507
type: LocalParameter
value: 1000.0

571506
type: LocalParameter
value: -1000.0

280395
type: SpeciesReference
stoichiometry: 1.0
species: 564360

564700
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Citrate

564574
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: GDP-mannose

566898
type: Reaction
name: aminotransferase
reversible: true
product: 237289
product: 237277
notes: GPR_ASSOCIATION: RSP_2176 GENE_LIST: RSP_2176; SUBSYSTEM: Alanine, aspartate and glutamate metabolism Equation: 4-Aminobutanoate + 2-Oxoglutarate <=> Succinate semialdehyde + L-Glutamate Confidence Level: 2
reactant: 237265
kinetic law: 237301
reactant: 237252
fast: false

237289
type: SpeciesReference
stoichiometry: 1.0
species: 564408

237277
type: SpeciesReference
stoichiometry: 1.0
species: 564808

237265
type: SpeciesReference
stoichiometry: 1.0
species: 564411

568455
type: LocalParameter
value: 0.0

568454
type: LocalParameter
value: 0.0

568453
type: LocalParameter
value: 1000.0

568452
type: LocalParameter
value: -1000.0

237252
type: SpeciesReference
stoichiometry: 1.0
species: 566222

566811
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Glycolaldehyde[e]

568194
type: Reaction
kinetic law: 307388
product: 307376
reactant: 307364
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Xylitol[e] <=> Xylitol[p] Confidence Level: 2
fast: false
reversible: true
name: Xylitol transport via diffusion

574357
type: LocalParameter
value: 0.0

574356
type: LocalParameter
value: 0.0

574354
type: LocalParameter
value: 1000.0

574353
type: LocalParameter
value: -1000.0

307376
type: SpeciesReference
stoichiometry: 1.0
species: 566700

566700
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Xylitol[p]

307364
type: SpeciesReference
stoichiometry: 1.0
species: 566701

566701
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Xylitol[e]

568223
type: Reaction
kinetic law: 308849
product: 308837
reactant: 308825
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Hippurate[e] <=> Confidence Level:
fast: false
reversible: false
name: Hippurate exchange

574516
type: LocalParameter
value: 0.0

574515
type: LocalParameter
value: 0.0

574513
type: LocalParameter
value: 1000.0

574512
type: LocalParameter
value: 0.0

308837
type: SpeciesReference
stoichiometry: 1.0
species: 566737

566737
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Hippurate[e]

308825
type: SpeciesReference
stoichiometry: 1.0
species: 566735

567932
type: Reaction
kinetic law: 294039
product: 294027
reactant: 294014
notes: GPR_ASSOCIATION: RSP_0842 GENE_LIST: RSP_0842; SUBSYSTEM: Transport, outer membrane Equation: Molybdate[e] <=> Molybdate[p] Confidence Level: 2
fast: false
reversible: true
name: molybdate transport via diffusion

572915
type: LocalParameter
value: 0.0

572913
type: LocalParameter
value: 0.0

572912
type: LocalParameter
value: 1000.0

572910
type: LocalParameter
value: -1000.0

294027
type: SpeciesReference
stoichiometry: 1.0
species: 566026

294014
type: SpeciesReference
stoichiometry: 1.0
species: 566028

566028
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Molybdate[e]

567740
type: Reaction
reactant: 280455
fast: false
product: 280491
kinetic law: 280504
notes: GPR_ASSOCIATION: RSP_2207 or RSP_1595 GENE_LIST: RSP_2207; RSP_1595; SUBSYSTEM: Pyrimidine metabolism Equation: Deoxyuridine + Orthophosphate <=> Uracil + 2-Deoxy-D-ribose 1-phosphate Confidence Level: 2
product: 280479
name: purine nucleoside phosphorylase
reactant: 280467
reversible: true

280455
type: SpeciesReference
stoichiometry: 1.0
species: 565018

565018
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyuridine

280491
type: SpeciesReference
stoichiometry: 1.0
species: 565102

565102
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2-Deoxy-D-ribose1-phosphate

571515
type: LocalParameter
value: 0.0

571514
type: LocalParameter
value: 0.0

571512
type: LocalParameter
value: 1000.0

571511
type: LocalParameter
value: -1000.0

280479
type: SpeciesReference
stoichiometry: 1.0
species: 564595

280467
type: SpeciesReference
stoichiometry: 1.0
species: 564369

565811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-Dglutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

564640
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Ferrocytochromec

567082
type: Reaction
kinetic law: 246442
product: 246430
reactant: 246418
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Mn+2[e] <=> Confidence Level:
fast: false
reversible: false
name: Mn+2 exchange

569015
type: LocalParameter
value: 0.0

569014
type: LocalParameter
value: 0.0

569013
type: LocalParameter
value: 1000.0

569012
type: LocalParameter
value: 0.0

246430
type: SpeciesReference
stoichiometry: 1.0
species: 566204

246418
type: SpeciesReference
stoichiometry: 1.0
species: 566203

566203
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Mn2[e]

567172
type: Reaction
reactant: 249434
product: 249458
reactant: 249446
kinetic law: 249482
reversible: true
product: 249470
name: Acyl-CoA dehydrogenase
notes: GPR_ASSOCIATION: RSP_3182 or RSP_2199 or RSP_0742 GENE_LIST: RSP_3182; RSP_2199; RSP_0742; SUBSYSTEM: Fatty acid biosynthesis Equation: 5-Methylhex-4-enoyl-CoA + FAD <=> (2E)-5-Methylhexa-2,4-dienoyl-CoA + FADH2 Confidence Level: 2
fast: false

249434
type: SpeciesReference
stoichiometry: 1.0
species: 566371

249458
type: SpeciesReference
stoichiometry: 1.0
species: 566373

249446
type: SpeciesReference
stoichiometry: 1.0
species: 564387

569280
type: LocalParameter
value: 0.0

569279
type: LocalParameter
value: 0.0

569278
type: LocalParameter
value: 1000.0

569277
type: LocalParameter
value: -1000.0

249470
type: SpeciesReference
stoichiometry: 1.0
species: 565352

567903
type: Reaction
fast: false
kinetic law: 292819
notes: GPR_ASSOCIATION: RSP_0998 GENE_LIST: RSP_0998; SUBSYSTEM: Transport, inner membrane Equation: H+[p] + Sodium <=> H+ + Sodium[p] Confidence Level: 2
product: 292795
reversible: true
name: Sodium/H+ antiporter
reactant: 292783
reactant: 292771
product: 292807

572756
type: LocalParameter
value: 0.0

572755
type: LocalParameter
value: 0.0

572753
type: LocalParameter
value: 1000.0

572752
type: LocalParameter
value: -1000.0

292795
type: SpeciesReference
stoichiometry: 1.0
species: 564535

292783
type: SpeciesReference
stoichiometry: 1.0
species: 566254

292771
type: SpeciesReference
stoichiometry: 1.0
species: 566248

292807
type: SpeciesReference
stoichiometry: 1.0
species: 566255

567563
type: Reaction
product: 268216
reactant: 268192
product: 268204
product: 268240
product: 268228
reversible: true
notes: GPR_ASSOCIATION: RSP_2111 GENE_LIST: RSP_2111; SUBSYSTEM: Peptidoglycan biosynthesis Equation: ATP + 2 D-Alanine <=> ADP + Orthophosphate + D-Alanyl-D-alanine Confidence Level: 2
name: D-alanine--D-alanine ligase
kinetic law: 268252
reactant: 268180
fast: false

268216
type: SpeciesReference
stoichiometry: 1.0
species: 564369

268192
type: SpeciesReference
stoichiometry: 2.0
species: 564658

564658
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: D-Alanine

268204
type: SpeciesReference
stoichiometry: 1.0
species: 564366

268240
type: SpeciesReference
stoichiometry: 1.0
species: 564535

268228
type: SpeciesReference
stoichiometry: 1.0
species: 565238

570595
type: LocalParameter
value: 0.0

570593
type: LocalParameter
value: 0.0

570592
type: LocalParameter
value: 1000.0

570591
type: LocalParameter
value: -1000.0

268180
type: SpeciesReference
stoichiometry: 1.0
species: 564348

567622
type: Reaction
product: 272290
reactant: 272242
fast: false
name: cobaltochelatase
product: 272302
reactant: 272254
product: 272314
kinetic law: 272326
reactant: 272230
reversible: true
notes: GPR_ASSOCIATION: RSP_2827 and RSP_1977and RSP_1976 GENE_LIST: RSP_2827; RSP_1977; RSP_1976; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: Hydrogenobyrinate a,c diamide + Cobalt ion + ATP + H2O <=> Cob(II)yrinate a,c diamide + Orthophosphate + ADP + 4 H+ Confidence Level: 2
product: 272278
reactant: 272266

272290
type: SpeciesReference
stoichiometry: 1.0
species: 564369

272242
type: SpeciesReference
stoichiometry: 1.0
species: 564727

564727
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cobaltion

272302
type: SpeciesReference
stoichiometry: 1.0
species: 564366

272254
type: SpeciesReference
stoichiometry: 1.0
species: 564348

272314
type: SpeciesReference
stoichiometry: 4.0
species: 564535

570899
type: LocalParameter
value: 0.0

570897
type: LocalParameter
value: 0.0

570896
type: LocalParameter
value: 1000.0

570894
type: LocalParameter
value: -1000.0

272230
type: SpeciesReference
stoichiometry: 1.0
species: 565838

565838
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Hydrogenobyrinatea,cdiamide

272278
type: SpeciesReference
stoichiometry: 1.0
species: 565840

565840
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cob(II)yrinatea,cdiamide

272266
type: SpeciesReference
stoichiometry: 1.0
species: 564345

565310
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Deoxy-D-manno-octulosonate

564838
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-Lactate

567792
type: Reaction
product: 283943
kinetic law: 283980
product: 283967
reactant: 283931
fast: false
notes: GPR_ASSOCIATION: RSP_2294 or RSP_0204 GENE_LIST: RSP_2294; RSP_0204; SUBSYSTEM: Pyruvate metabolism Equation: (R)-S-Lactoylglutathione + H2O <=> Glutathione + (R)-Lactate Confidence Level: 2
name: putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein
reactant: 283919
product: 283955
reversible: false

283943
type: SpeciesReference
stoichiometry: 1.0
species: 564469

571775
type: LocalParameter
value: 0.0

571774
type: LocalParameter
value: 0.0

571772
type: LocalParameter
value: 1000.0

571771
type: LocalParameter
value: 0.0

283967
type: SpeciesReference
stoichiometry: 1.0
species: 564535

283931
type: SpeciesReference
stoichiometry: 1.0
species: 564345

283919
type: SpeciesReference
stoichiometry: 1.0
species: 565571

565571
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-S-Lactoylglutathione

283955
type: SpeciesReference
stoichiometry: 1.0
species: 564838

567421
type: Reaction
product: 260667
name: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
product: 260680
reversible: true
kinetic law: 260692
fast: false
reactant: 260655
notes: GPR_ASSOCIATION: RSP_2115 GENE_LIST: RSP_2115; SUBSYSTEM: Lipopolysaccharide biosynthesis Equation: UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine + H2O <=> UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine + Acetate Confidence Level: 2
reactant: 260643

260667
type: SpeciesReference
stoichiometry: 1.0
species: 565927

565927
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine

260680
type: SpeciesReference
stoichiometry: 1.0
species: 564427

570052
type: LocalParameter
value: 0.0

570051
type: LocalParameter
value: 0.0

570050
type: LocalParameter
value: 1000.0

570048
type: LocalParameter
value: -1000.0

260655
type: SpeciesReference
stoichiometry: 1.0
species: 564345

260643
type: SpeciesReference
stoichiometry: 1.0
species: 565745

565745
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine

567869
type: Reaction
notes: GPR_ASSOCIATION: (RSP_3337 and RSP_3335 and RSP_3336 and RSP_3338) or (RSP_0016 and RSP_0017 and RSP_0015 and RSP_0161) or (RSP_2158 and RSP_2156 and RSP_2157 and RSP_2159) or (RSP_3038 and RSP_3039 and RSP_3040 and RSP_3041) GENE_LIST: RSP_3337; RSP_3335; RSP_3336; RSP_3338; RSP_0016; RSP_0017; RSP_0015; RSP_0161; RSP_2158; RSP_2156; RSP_2157; RSP_2159; RSP_3038; RSP_3039; RSP_3040; RSP_3041; SUBSYSTEM: Transport, inner membrane Equation: ATP + H2O + spermidine[p] <=> ADP + H+ + Orthophosphate + spermidine Confidence Level: 2
kinetic law: 289695
reactant: 289633
product: 289646
name: ABC spermidine transporter
product: 289658
reversible: false
fast: false
product: 289670
reactant: 289621
product: 289683
reactant: 289609

572570
type: LocalParameter
value: 0.0

572568
type: LocalParameter
value: 0.0

572567
type: LocalParameter
value: 1000.0

572565
type: LocalParameter
value: 0.0

289633
type: SpeciesReference
stoichiometry: 1.0
species: 566038

289646
type: SpeciesReference
stoichiometry: 1.0
species: 564366

289658
type: SpeciesReference
stoichiometry: 1.0
species: 564535

289670
type: SpeciesReference
stoichiometry: 1.0
species: 564369

289621
type: SpeciesReference
stoichiometry: 1.0
species: 564345

289683
type: SpeciesReference
stoichiometry: 1.0
species: 566013

566013
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Spermidine

289609
type: SpeciesReference
stoichiometry: 1.0
species: 564348

568052
type: Reaction
kinetic law: 300772
product: 300760
reactant: 300748
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Glucose[e] <=> Confidence Level:
fast: false
reversible: false
name: Glucose exchange

573582
type: LocalParameter
value: 0.0

573581
type: LocalParameter
value: 0.0

573579
type: LocalParameter
value: 1000.0

573578
type: LocalParameter
value: 0.0

300760
type: SpeciesReference
stoichiometry: 1.0
species: 566514

566514
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Glucose[e]

300748
type: SpeciesReference
stoichiometry: 1.0
species: 566513

565712
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (3R)-3-Hydroxydecanoyl-[acyl-carrierprotein]

567330
type: Reaction
product: 256242
reactant: 256217
reactant: 256204
fast: false
name: putative choline kinase
kinetic law: 256254
product: 256229
notes: GPR_ASSOCIATION: RSP_1457 GENE_LIST: RSP_1457; SUBSYSTEM: Glycerophospholipid metabolism Equation: ATP + Choline <=> ADP + Choline phosphate Confidence Level: 2
reversible: true

256242
type: SpeciesReference
stoichiometry: 1.0
species: 565060

565060
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Cholinephosphate

256217
type: SpeciesReference
stoichiometry: 1.0
species: 564610

256204
type: SpeciesReference
stoichiometry: 1.0
species: 564348

569714
type: LocalParameter
value: 0.0

569713
type: LocalParameter
value: 0.0

569711
type: LocalParameter
value: 1000.0

569710
type: LocalParameter
value: -1000.0

256229
type: SpeciesReference
stoichiometry: 1.0
species: 564366

568288
type: Reaction
reversible: false
reactant: 313554
kinetic law: 313626
product: 313590
product: 313602
notes: GPR_ASSOCIATION: RSP_1041 GENE_LIST: RSP_1041; SUBSYSTEM: Glycerophospholipid metabolism Equation: ATP + (9Z)-Hexadecenoic acid + CoA <=> AMP + Diphosphate + Acyl-CoA Confidence Level: 1
fast: false
reactant: 313578
product: 313614
reactant: 313566

313554
type: SpeciesReference
stoichiometry: 1.0
species: 564348

574874
type: LocalParameter
value: 0.0

574872
type: LocalParameter
value: 0.0

574871
type: LocalParameter
value: 1000.0

574869
type: LocalParameter
value: 0.0

313590
type: SpeciesReference
stoichiometry: 1.0
species: 564378

313602
type: SpeciesReference
stoichiometry: 1.0
species: 564396

313578
type: SpeciesReference
stoichiometry: 1.0
species: 564372

313614
type: SpeciesReference
stoichiometry: 1.0
species: 564442

313566
type: SpeciesReference
stoichiometry: 1.0
species: 566792

566792
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (9Z)-Hexadecenoicacid

565388
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: tRNA(Ile)

567834
type: Reaction
reactant: 286828
notes: GPR_ASSOCIATION: RSP_1779 GENE_LIST: RSP_1779; SUBSYSTEM: Terpenoid backbone biosynthesis Equation: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ATP <=> 2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ADP Confidence Level: 2
product: 286852
fast: false
reversible: true
name: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
product: 286840
kinetic law: 286864
reactant: 286816

286828
type: SpeciesReference
stoichiometry: 1.0
species: 564348

286852
type: SpeciesReference
stoichiometry: 1.0
species: 564366

286840
type: SpeciesReference
stoichiometry: 1.0
species: 565856

572376
type: LocalParameter
value: 0.0

572375
type: LocalParameter
value: 0.0

572373
type: LocalParameter
value: 1000.0

572372
type: LocalParameter
value: -1000.0

286816
type: SpeciesReference
stoichiometry: 1.0
species: 565855

568025
type: Reaction
kinetic law: 298973
reactant: 298923
notes: GPR_ASSOCIATION: RSP_0960 GENE_LIST: RSP_0960; SUBSYSTEM: Propanoate metabolism Equation: Crotonoyl-CoA + NADPH + H+ <=> Butanoyl-CoA + NAD+ Confidence Level: 4
fast: false
reactant: 298911
reversible: true
product: 298949
name: crotonyl-CoA carboxylase/reductase
product: 298961
reactant: 298936

573434
type: LocalParameter
value: 0.0

573432
type: LocalParameter
value: 0.0

573431
type: LocalParameter
value: 1000.0

573429
type: LocalParameter
value: -1000.0

298923
type: SpeciesReference
stoichiometry: 1.0
species: 564357

298911
type: SpeciesReference
stoichiometry: 1.0
species: 566375

298949
type: SpeciesReference
stoichiometry: 1.0
species: 565859

298961
type: SpeciesReference
stoichiometry: 1.0
species: 564360

298936
type: SpeciesReference
stoichiometry: 1.0
species: 564535

565928
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 2,3,2'3'-Tetrakis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6-beta-D-

567244
type: Reaction
reactant: 252530
kinetic law: 252579
reversible: true
product: 252554
reactant: 252517
fast: false
name: 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
notes: GPR_ASSOCIATION: RSP_3535 or RSP_2196 GENE_LIST: RSP_3535; RSP_2196; SUBSYSTEM: Fatty acid metabolism Equation: (S)-3-Hydroxytetradecanoyl-CoA + NAD+ <=> 3-Oxotetradecanoyl-CoA +NADH Confidence Level: 2
product: 252542
product: 252567

252530
type: SpeciesReference
stoichiometry: 1.0
species: 564351

569486
type: LocalParameter
value: 0.0

569485
type: LocalParameter
value: 0.0

569484
type: LocalParameter
value: 1000.0

569483
type: LocalParameter
value: -1000.0

252554
type: SpeciesReference
stoichiometry: 1.0
species: 564354

252517
type: SpeciesReference
stoichiometry: 1.0
species: 565655

252542
type: SpeciesReference
stoichiometry: 1.0
species: 565727

565727
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Oxotetradecanoyl-CoA

252567
type: SpeciesReference
stoichiometry: 1.0
species: 564535

567542
type: Reaction
kinetic law: 267046
product: 267034
reactant: 267022
notes: GPR_ASSOCIATION: RSP_2864 GENE_LIST: RSP_2864; SUBSYSTEM: Pentose phosphate pathway Equation: D-Ribulose 5-phosphate <=> D-Xylulose 5-phosphate Confidence Level: 2
fast: false
reversible: true
name: ribulose-5-phosphate 3-epimerase

570498
type: LocalParameter
value: 0.0

570496
type: LocalParameter
value: 0.0

570495
type: LocalParameter
value: 1000.0

570494
type: LocalParameter
value: -1000.0

267034
type: SpeciesReference
stoichiometry: 1.0
species: 564805

267022
type: SpeciesReference
stoichiometry: 1.0
species: 564763

567779
type: Reaction
notes: GPR_ASSOCIATION: RSP_0551 GENE_LIST: RSP_0551; SUBSYSTEM: Pyrimidine metabolism Equation: ATP + dUMP <=> ADP + dUDP Confidence Level: 2
reactant: 282955
product: 282992
reversible: true
name: thymidylate kinase
product: 282980
kinetic law: 283004
fast: false
reactant: 282967

282955
type: SpeciesReference
stoichiometry: 1.0
species: 564348

282992
type: SpeciesReference
stoichiometry: 1.0
species: 565971

565971
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dUDP

282980
type: SpeciesReference
stoichiometry: 1.0
species: 564366

571710
type: LocalParameter
value: 0.0

571709
type: LocalParameter
value: 0.0

571707
type: LocalParameter
value: 1000.0

571706
type: LocalParameter
value: -1000.0

282967
type: SpeciesReference
stoichiometry: 1.0
species: 564952

564952
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: dUMP

566167
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Alanyl-D-alanine[e]

566516
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Acetate[p]

567039
type: Reaction
kinetic law: 244814
reversible: true
product: 244802
name: S-adenosyl-L-homocysteine hydrolase
reactant: 244766
product: 244790
reactant: 244778
notes: GPR_ASSOCIATION: RSP_1514 GENE_LIST: RSP_1514; SUBSYSTEM: Cysteine and methionine metabolism Equation: S-Adenosyl-L-homocysteine + H2O <=> Adenosine + L-Homocysteine Confidence Level: 3
fast: false

568888
type: LocalParameter
value: 0.0

568887
type: LocalParameter
value: 0.0

568886
type: LocalParameter
value: 1000.0

568885
type: LocalParameter
value: -1000.0

244802
type: SpeciesReference
stoichiometry: 1.0
species: 564694

244766
type: SpeciesReference
stoichiometry: 1.0
species: 564399

244790
type: SpeciesReference
stoichiometry: 1.0
species: 564775

564775
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Adenosine

244778
type: SpeciesReference
stoichiometry: 1.0
species: 564345

566590
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: D-Gluconicacid[e]

567010
type: Reaction
kinetic law: 243341
product: 243329
reactant: 243317
reactant: 243305
notes: GPR_ASSOCIATION: RSP_0267 GENE_LIST: RSP_0267; SUBSYSTEM: Carotenoid biosynthesis Equation: 3,4-Dihydroanhydrorhodovibrin + H2O <=> 3',4'-Dihydrorhodovibrin Confidence Level: 3
fast: false
reversible: true
name: hydroxyneurosporene synthase

568800
type: LocalParameter
value: 0.0

568799
type: LocalParameter
value: 0.0

568798
type: LocalParameter
value: 1000.0

568797
type: LocalParameter
value: -1000.0

243329
type: SpeciesReference
stoichiometry: 1.0
species: 566396

566396
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3',4'-Dihydrorhodovibrin

243317
type: SpeciesReference
stoichiometry: 1.0
species: 564345

243305
type: SpeciesReference
stoichiometry: 1.0
species: 566394

566394
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3,4-Dihydroanhydrorhodovibrin

566315
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: 3'-CMP[e]

568365
type: Reaction
kinetic law: 318740
product: 318728
reactant: 318715
notes: GPR_ASSOCIATION: GENE_LIST: SUBSYSTEM: Exchange reaction Equation: Sulfite[e] <=> Confidence Level:
fast: false
reversible: false
name: Sulfite exchange

575309
type: LocalParameter
value: 0.0

575307
type: LocalParameter
value: 0.0

575306
type: LocalParameter
value: 1000.0

575304
type: LocalParameter
value: 0.0

318728
type: SpeciesReference
stoichiometry: 1.0
species: 566867

566867
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: Sulfite[e]

318715
type: SpeciesReference
stoichiometry: 1.0
species: 566866

566711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564342
name: Glycolate[p]

567413
type: Reaction
reactant: 260148
notes: GPR_ASSOCIATION: RSP_2279 or RSP_2255 GENE_LIST: RSP_2279; RSP_2255; SUBSYSTEM: Lipid biosynthesis proteins Equation: ATP + Hexadecanoic acid + CoA <=> AMP + Palmitoyl-CoA + Diphosphate Confidence Level: 2
reversible: false
kinetic law: 260220
product: 260196
product: 260184
product: 260208
fast: false
name: long chain acyl-CoA synthetase
reactant: 260160
reactant: 260172

260148
type: SpeciesReference
stoichiometry: 1.0
species: 564348

570022
type: LocalParameter
value: 0.0

570021
type: LocalParameter
value: 0.0

570020
type: LocalParameter
value: 1000.0

570018
type: LocalParameter
value: 0.0

260196
type: SpeciesReference
stoichiometry: 1.0
species: 564378

260184
type: SpeciesReference
stoichiometry: 1.0
species: 564396

260208
type: SpeciesReference
stoichiometry: 1.0
species: 566350

566350
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Palmitoyl-CoA

260160
type: SpeciesReference
stoichiometry: 1.0
species: 564796

260172
type: SpeciesReference
stoichiometry: 1.0
species: 564372

568102
type: Reaction
product: 303103
kinetic law: 303127
reactant: 303091
product: 303115
reversible: true
name: (R)-Malate transport via Na+ symport
fast: false
notes: GPR_ASSOCIATION: RSP_0910 and RSP_0911 and RSP_0912 GENE_LIST: RSP_0910; RSP_0911; RSP_0912; SUBSYSTEM: Transport, inner membrane Equation: (R)-Malate[p] + 2 Sodium[p] <=> (R)-Malate + 2 Sodium Confidence Level: 3
reactant: 303079

303103
type: SpeciesReference
stoichiometry: 1.0
species: 566412

566412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: (R)-Malate

573857
type: LocalParameter
value: 0.0

573855
type: LocalParameter
value: 0.0

573854
type: LocalParameter
value: 1000.0

573852
type: LocalParameter
value: -1000.0

303091
type: SpeciesReference
stoichiometry: 2.0
species: 566255

303115
type: SpeciesReference
stoichiometry: 2.0
species: 566254

303079
type: SpeciesReference
stoichiometry: 1.0
species: 566580

565517
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 5-Phosphoribosylamine

567828
type: Reaction
product: 286394
fast: false
reactant: 286370
kinetic law: 286406
reversible: true
name: 3-ketoacid CoA transferase
reactant: 286358
notes: GPR_ASSOCIATION: RSP_1914 GENE_LIST: RSP_1914; SUBSYSTEM: Succinate metabolism Equation: Succinyl-CoA + Acetoacetate <=> Succinate + Acetoacetyl-CoA Confidence Level: 2
product: 286382

286394
type: SpeciesReference
stoichiometry: 1.0
species: 564904

286370
type: SpeciesReference
stoichiometry: 1.0
species: 564709

564709
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Acetoacetate

572343
type: LocalParameter
value: 0.0

572342
type: LocalParameter
value: 0.0

572340
type: LocalParameter
value: 1000.0

572339
type: LocalParameter
value: -1000.0

286358
type: SpeciesReference
stoichiometry: 1.0
species: 564559

286382
type: SpeciesReference
stoichiometry: 1.0
species: 564448

566147
type: Species
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564338
name: L-Glutamine[e]

567638
type: Reaction
kinetic law: 273574
product: 273562
reactant: 273549
reactant: 273537
notes: GPR_ASSOCIATION: RSP_0284 GENE_LIST: RSP_0284; SUBSYSTEM: Porphyrin and chlorophyll metabolism Equation: 3-Vinylbacteriochlorophyllide a + H2O <=> 3-Hydroxyethylbacteriochlorophyllide a Confidence Level: 2
fast: false
reversible: false
name: 2-vinyl bacteriochlorophyllide hydratase

570982
type: LocalParameter
value: 0.0

570980
type: LocalParameter
value: 0.0

570979
type: LocalParameter
value: 1000.0

570978
type: LocalParameter
value: 0.0

273562
type: SpeciesReference
stoichiometry: 1.0
species: 565958

273549
type: SpeciesReference
stoichiometry: 1.0
species: 564345

273537
type: SpeciesReference
stoichiometry: 1.0
species: 565957

565957
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Vinylbacteriochlorophyllidea

567728
type: Reaction
reactant: 279660
reactant: 279672
notes: GPR_ASSOCIATION: RSP_1597 GENE_LIST: RSP_1597; SUBSYSTEM: Purine metabolism Equation: Deoxyadenosine + H2O + H+ <=> Deoxyinosine + NH3 Confidence Level: 2
reactant: 279684
name: adenosine deaminase
reversible: false
product: 279696
kinetic law: 279720
product: 279708
fast: false

279660
type: SpeciesReference
stoichiometry: 1.0
species: 566238

566238
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: Deoxyadenosine

279672
type: SpeciesReference
stoichiometry: 1.0
species: 564345

279684
type: SpeciesReference
stoichiometry: 1.0
species: 564535

279696
type: SpeciesReference
stoichiometry: 1.0
species: 565066

571455
type: LocalParameter
value: 0.0

571454
type: LocalParameter
value: 0.0

571452
type: LocalParameter
value: 1000.0

571451
type: LocalParameter
value: 0.0

279708
type: SpeciesReference
stoichiometry: 1.0
species: 564381

566956
type: Reaction
reactant: 240624
reversible: false
name: putative ornithine decarboxylase
kinetic law: 240672
fast: false
notes: GPR_ASSOCIATION: RSP_1991 GENE_LIST: RSP_1991; SUBSYSTEM: Arginine and proline metabolism Equation: L-Ornithine + H+ <=> Putrescine + CO2 Confidence Level: 2
product: 240660
reactant: 240636
product: 240648

240624
type: SpeciesReference
stoichiometry: 1.0
species: 564526

564526
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: L-Ornithine

568631
type: LocalParameter
value: 0.0

568630
type: LocalParameter
value: 0.0

568629
type: LocalParameter
value: 1000.0

568628
type: LocalParameter
value: 0.0

240660
type: SpeciesReference
stoichiometry: 1.0
species: 564375

240636
type: SpeciesReference
stoichiometry: 1.0
species: 564535

240648
type: SpeciesReference
stoichiometry: 1.0
species: 564661

567289
type: Reaction
kinetic law: 254641
product: 254629
reactant: 254617
notes: GPR_ASSOCIATION: RSP_1947 GENE_LIST: RSP_1947; SUBSYSTEM: Fructose and mannose metabolism Equation: D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate Confidence Level: 2
fast: false
reversible: true
name: triosephosphate isomerase

569612
type: LocalParameter
value: 0.0

569611
type: LocalParameter
value: 0.0

569610
type: LocalParameter
value: 1000.0

569609
type: LocalParameter
value: -1000.0

254629
type: SpeciesReference
stoichiometry: 1.0
species: 564604

254617
type: SpeciesReference
stoichiometry: 1.0
species: 564619

567051
type: Reaction
fast: false
kinetic law: 245380
name: cystathionine gamma-synthase
reversible: true
product: 245368
reactant: 245320
reactant: 245332
product: 245344
product: 245356
notes: GPR_ASSOCIATION: RSP_2917 or RSP_1851 GENE_LIST: RSP_2917; RSP_1851; SUBSYSTEM: Cysteine and methionine metabolism Equation: O-Succinyl-L-homoserine + Hydrogen sulfide <=> L-Homocysteine + Succinate Confidence Level: 2

568921
type: LocalParameter
value: 0.0

568920
type: LocalParameter
value: 0.0

568919
type: LocalParameter
value: 1000.0

568918
type: LocalParameter
value: -1000.0

245368
type: SpeciesReference
stoichiometry: 1.0
species: 564535

245320
type: SpeciesReference
stoichiometry: 1.0
species: 565286

565286
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: O-Succinyl-L-homoserine

245332
type: SpeciesReference
stoichiometry: 1.0
species: 564865

245344
type: SpeciesReference
stoichiometry: 1.0
species: 564694

245356
type: SpeciesReference
stoichiometry: 1.0
species: 564448

565433
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 564339
name: 3-Hydroxypropionyl-CoA

566908
type: Reaction
kinetic law: 237941
reactant: 237905
notes: GPR_ASSOCIATION: RSP_2227 or RSP_2886 GENE_LIST: RSP_2227; RSP_2886; SUBSYSTEM: Amino sugar and nucleotide sugar metabolism Equation: ATP + D-Glucose 1-phosphate <=> Diphosphate + ADP-glucose Confidence Level: 4
fast: false
product: 237929
reactant: 237893
reactant: 237881
reversible: true
product: 237917
name: ADP-glucose pyrophosphorylase