MODEL1106200000
type: SBMLModel
reaction: 723722
reaction: 721914
species: 720504
reaction: 723584
reaction: 720953
reaction: 723397
species: 720063
species: 719801
species: 717239
reaction: 723903
species: 719214
reaction: 722488
reaction: 723321
area units: 076543
species: 719418
species: 718651
reaction: 720769
reaction: 722127
reaction: 723932
species: 718537
reaction: 723893
species: 719133
reaction: 724153
reaction: 723344
species: 719625
species: 719322
species: 717615
reaction: 721343
reaction: 723876
species: 718975
reaction: 723163
species: 718667
reaction: 724156
reaction: 721525
species: 719547
species: 720665
reaction: 722994
reaction: 723429
reaction: 722484
species: 718589
reaction: 724209
species: 719292
species: 719933
reaction: 722439
species: 720525
species: 720599
reaction: 722731
reaction: 724283
reaction: 721808
species: 718140
reaction: 720961
reaction: 722734
species: 719460
reaction: 722695
species: 719152
species: 720626
reaction: 722766
species: 718905
reaction: 723911
reaction: 723872
reaction: 723639
species: 720405
reaction: 722990
compartment: 717082
species: 720480
species: 718158
reaction: 723940
species: 718839
reaction: 723826
reaction: 723972
reaction: 724161
reaction: 724193
species: 719518
species: 719952
species: 718693
species: 719430
species: 717765
reaction: 721533
species: 717738

723722
type: Reaction
kinetic law: 182249
reversible: false
product: 182225
reactant: 182201
product: 182213
reactant: 182177
product: 182237
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9220.t1 SUBSYSTEM: One carbon pool by folate
fast: false
name: 5-Formyltetrahydrofolate cyclo-ligase (ADP-forming)
reactant: 182189

734383
type: LocalParameter
value: 0.0

734381
type: LocalParameter
value: 0.0

734380
type: LocalParameter
value: 1000.0

734379
type: LocalParameter
value: 0.0

182225
type: SpeciesReference
stoichiometry: 1.0
species: 719694

719694
type: Species
notes: FORMULA: C20H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 5,10-Methenyltetrahydrofolate

717079
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Mitochondria

182201
type: SpeciesReference
stoichiometry: 1.0
species: 719404

719404
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: H+

182213
type: SpeciesReference
stoichiometry: 1.0
species: 718293

718293
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: ADP

182177
type: SpeciesReference
stoichiometry: 1.0
species: 718110

718110
type: Species
notes: FORMULA: C20H21N7O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 5-Formyltetrahydrofolate

182237
type: SpeciesReference
stoichiometry: 1.0
species: 720143

720143
type: Species
notes: FORMULA: HPO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Phosphate

182189
type: SpeciesReference
stoichiometry: 1.0
species: 718503

718503
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: ATP

721914
type: Reaction
kinetic law: 110558
product: 110546
product: 110534
reactant: 110522
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g11300.t1 SUBSYSTEM: Biosynthesis of unsaturated fatty acids
fast: false
reversible: false
name: 3-hydroxyacyl-CoA dehydratase (18:1(2E))

728317
type: LocalParameter
value: 0.0

728314
type: LocalParameter
value: 0.0

728311
type: LocalParameter
value: 1000.0

728308
type: LocalParameter
value: 0.0

110546
type: SpeciesReference
stoichiometry: 1.0
species: 719927

719927
type: Species
notes: FORMULA: C39H64N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (2E)-Octadecenoyl-CoA

717072
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Cytosol

110534
type: SpeciesReference
stoichiometry: 1.0
species: 719424

719424
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: H2O

110522
type: SpeciesReference
stoichiometry: 1.0
species: 717762

717762
type: Species
notes: FORMULA: C39H66N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-Hydroxyoctadecanoyl-CoA

720504
type: Species
notes: FORMULA: C10H14N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Thymidine

723584
type: Reaction
product: 174492
product: 174528
product: 174540
reactant: 174456
product: 174504
notes: GENE_ASSOCIATION: ((CRv4_Au5.s60.g12367.t1 and CRv4_Au5.s10.g563.t1) or (CRv4_Au5.s60.g12367.t1 and CRv4_Au5.s14.g5492.t1) or (CRv4_Au5.s60.g12367.t1 and CRv4_Au5.s5.g12205.t1) or (CRv4_Au5.s60.g12367.t1 and CRv4_Au5.s5.g12205.t2) or (CRv4_Au5.s60.g12367.t1 and CRv4_Au5.s23.g9860.t1)) SUBSYSTEM: Methionine metabolism
name: O-acetyl-L-homoserine acetate-lyase
fast: false
reactant: 174480
product: 174516
reactant: 174468
kinetic law: 174552
reversible: false

174492
type: SpeciesReference
stoichiometry: 1.0
species: 718191

718191
type: Species
notes: FORMULA: C2H3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Acetate

717077
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Chloroplast

174528
type: SpeciesReference
stoichiometry: 1.0
species: 719534

719534
type: Species
notes: FORMULA: HSO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: HSO3-

174540
type: SpeciesReference
stoichiometry: 1.0
species: 720513

720513
type: Species
notes: FORMULA: C6H7NO2S2R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Oxidized thioredoxin

174456
type: SpeciesReference
stoichiometry: 1.0
species: 718249

718249
type: Species
notes: FORMULA: C6H11NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: O-Acetyl-L-homoserine

174504
type: SpeciesReference
stoichiometry: 1.0
species: 719402

719402
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: H+

174480
type: SpeciesReference
stoichiometry: 1.0
species: 720567

720567
type: Species
notes: FORMULA: HS2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Thiosulfate

174516
type: SpeciesReference
stoichiometry: 1.0
species: 719466

719466
type: Species
notes: FORMULA: C4H9NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Homocysteine

174468
type: SpeciesReference
stoichiometry: 1.0
species: 720516

720516
type: Species
notes: FORMULA: C6H9NO2S2R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Reduced thioredoxin

733823
type: LocalParameter
value: 0.0

733822
type: LocalParameter
value: 0.0

733820
type: LocalParameter
value: 1000.0

733819
type: LocalParameter
value: 0.0

720953
type: Reaction
kinetic law: 084498
product: 084486
reactant: 084474
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: fatty acid transport (16:0)

725562
type: LocalParameter
value: 0.0

725559
type: LocalParameter
value: 0.0

725556
type: LocalParameter
value: 1000.0

725555
type: LocalParameter
value: -1000.0

084486
type: SpeciesReference
stoichiometry: 1.0
species: 719470

719470
type: Species
notes: FORMULA: C16H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Hexadecanoate (n-C16:0)

084474
type: SpeciesReference
stoichiometry: 1.0
species: 719472

719472
type: Species
notes: FORMULA: C16H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Hexadecanoate (n-C16:0)

723397
type: Reaction
product: 167799
notes: GENE_ASSOCIATION: (CRv4_Au5.s6.g12446.t1 or CRv4_Au5.s29.g10094.t1) SUBSYSTEM: Glycolysis / Gluconeogenesis;Alanine and aspartate metabolism
reversible: true
kinetic law: 167823
name: pyruvate dehydrogenase (dihydrolipoamide acetyltransferase)
product: 167811
fast: false
reactant: 167787
reactant: 167775

167799
type: SpeciesReference
stoichiometry: 1.0
species: 718229

718229
type: Species
notes: FORMULA: C23H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Acetyl-CoA

733156
type: LocalParameter
value: 0.0

733155
type: LocalParameter
value: 0.0

733152
type: LocalParameter
value: 1000.0

733151
type: LocalParameter
value: -1000.0

167811
type: SpeciesReference
stoichiometry: 1.0
species: 718911

718911
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Dihydrolipoamide

167787
type: SpeciesReference
stoichiometry: 1.0
species: 718669

718669
type: Species
notes: FORMULA: C21H32N7O16P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Coenzyme A

167775
type: SpeciesReference
stoichiometry: 1.0
species: 718281

718281
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: S-Acetyldihydrolipoamide

720063
type: Species
notes: FORMULA: C3H2O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Phosphoenolpyruvate

719801
type: Species
notes: FORMULA: C21H26N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Nicotinamide adenine dinucleotide

717239
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 2-Hydroxy-3-oxopropanoate

723903
type: Reaction
fast: false
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s3.g10375.t1 or CRv4_Au5.s5.g12268.t1) SUBSYSTEM: Purine metabolism
reactant: 194523
product: 194548
product: 194536
reactant: 194511
kinetic law: 194560
name: adenosine deaminase
reactant: 194499

194523
type: SpeciesReference
stoichiometry: 1.0
species: 719424

194548
type: SpeciesReference
stoichiometry: 1.0
species: 719847

719847
type: Species
notes: FORMULA: NH4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Ammonium

194536
type: SpeciesReference
stoichiometry: 1.0
species: 719582

719582
type: Species
notes: FORMULA: C10H12N4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Inosine

194511
type: SpeciesReference
stoichiometry: 1.0
species: 719394

719394
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: H+

735332
type: LocalParameter
value: 0.0

735331
type: LocalParameter
value: 0.0

735329
type: LocalParameter
value: 1000.0

735328
type: LocalParameter
value: 0.0

194499
type: SpeciesReference
stoichiometry: 1.0
species: 718283

718283
type: Species
notes: FORMULA: C10H13N5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Adenosine

719214
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: D-Galactose

722488
type: Reaction
product: 130493
reactant: 130481
reactant: 130469
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Galactose metabolism
fast: false
product: 130505
name: 3-O-alpha-D-Galactosyl-1D-myo-inositol galactohydrolase
kinetic law: 130517
reversible: false

130493
type: SpeciesReference
stoichiometry: 1.0
species: 719214

130481
type: SpeciesReference
stoichiometry: 1.0
species: 719430

719430
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: H2O

130469
type: SpeciesReference
stoichiometry: 1.0
species: 717161

717161
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1-alpha-D-Galactosyl-myo-inositol

130505
type: SpeciesReference
stoichiometry: 1.0
species: 719580

719580
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: myo-Inositol

729985
type: LocalParameter
value: 0.0

729983
type: LocalParameter
value: 0.0

729982
type: LocalParameter
value: 1000.0

729981
type: LocalParameter
value: 0.0

723321
type: Reaction
reactant: 165632
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g807.t1 or CRv4_Au5.s31.g11378.t1) SUBSYSTEM: Glycine, serine and threonine metabolism;Lysine biosynthesis
fast: false
name: aspartate kinase
product: 165668
product: 165656
reactant: 165644
kinetic law: 165680
reversible: false

165632
type: SpeciesReference
stoichiometry: 1.0
species: 718469

718469
type: Species
notes: FORMULA: C4H6NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Aspartate

165668
type: SpeciesReference
stoichiometry: 1.0
species: 718291

718291
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: ADP

165656
type: SpeciesReference
stoichiometry: 1.0
species: 718053

718053
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 4-Phospho-L-aspartate

165644
type: SpeciesReference
stoichiometry: 1.0
species: 718501

718501
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: ATP

732905
type: LocalParameter
value: 0.0

732902
type: LocalParameter
value: 0.0

732899
type: LocalParameter
value: 1000.0

732898
type: LocalParameter
value: 0.0

719418
type: Species
notes: FORMULA: H2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: H2

718651
type: Species
notes: FORMULA: CO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Carbon monoxide

720769
type: Reaction
kinetic law: 075269
reactant: 075257
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: sulfite exchange

724806
type: LocalParameter
value: 0.0

724803
type: LocalParameter
value: 0.0

724800
type: LocalParameter
value: 0.0

724797
type: LocalParameter
value: 0.0

075257
type: SpeciesReference
stoichiometry: 1.0
species: 719532

719532
type: Species
notes: FORMULA: HSO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: HSO3-

717073
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Extra-organism

722127
type: Reaction
reactant: 115525
product: 115549
product: 115561
fast: false
name: O3-Acetyl-L-serine acetate-lyase (adding hydrogen sulfide), chloroplast
kinetic law: 115585
product: 115573
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6764.t1 or CRv4_Au5.s16.g6764.t2 or CRv4_Au5.s3.g10608.t1 or CRv4_Au5.s60.g12367.t1) SUBSYSTEM: Cysteine and methionine metabolism
reactant: 115537
reversible: false

115525
type: SpeciesReference
stoichiometry: 1.0
species: 718261

718261
type: Species
notes: FORMULA: C5H9NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: O-Acetyl-L-serine

115549
type: SpeciesReference
stoichiometry: 1.0
species: 718191

115561
type: SpeciesReference
stoichiometry: 1.0
species: 719402

728796
type: LocalParameter
value: 0.0

728794
type: LocalParameter
value: 0.0

728792
type: LocalParameter
value: 1000.0

728791
type: LocalParameter
value: 0.0

115573
type: SpeciesReference
stoichiometry: 1.0
species: 720305

720305
type: Species
notes: FORMULA: C3H6NO5S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: S-Sulfo-L-cysteine

115537
type: SpeciesReference
stoichiometry: 1.0
species: 720567

723932
type: Reaction
reversible: false
fast: false
kinetic law: 196347
notes: GENE_ASSOCIATION: CRv4_Au5.s26.g9990.t1 SUBSYSTEM: Purine metabolism
reactant: 196299
name: ATP:dGDP phosphotransferase, mitochondria
reactant: 196287
product: 196323
reactant: 196311
product: 196335

735469
type: LocalParameter
value: 0.0

735468
type: LocalParameter
value: 0.0

735467
type: LocalParameter
value: 1000.0

735465
type: LocalParameter
value: 0.0

196299
type: SpeciesReference
stoichiometry: 1.0
species: 718827

718827
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: dGDP

196287
type: SpeciesReference
stoichiometry: 1.0
species: 718503

196323
type: SpeciesReference
stoichiometry: 1.0
species: 718293

196311
type: SpeciesReference
stoichiometry: 1.0
species: 719404

196335
type: SpeciesReference
stoichiometry: 1.0
species: 718847

718847
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: dGTP

718537
type: Species
notes: FORMULA: C25H38N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Butanoyl-CoA

723893
type: Reaction
kinetic law: 193979
fast: false
product: 193955
reversible: false
product: 193967
reactant: 193919
name: Propanoate:CoA ligase (AMP-forming), mitochondria
reactant: 193895
reactant: 193907
product: 193931
product: 193943
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g14502.t1 SUBSYSTEM: Propanoate metabolism

735287
type: LocalParameter
value: 0.0

735286
type: LocalParameter
value: 0.0

735284
type: LocalParameter
value: 1000.0

735283
type: LocalParameter
value: 0.0

193955
type: SpeciesReference
stoichiometry: 1.0
species: 720171

720171
type: Species
notes: FORMULA: C24H36N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Propanoyl-CoA

193967
type: SpeciesReference
stoichiometry: 1.0
species: 720182

720182
type: Species
notes: FORMULA: P2HO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Diphosphate

193919
type: SpeciesReference
stoichiometry: 1.0
species: 720161

720161
type: Species
notes: FORMULA: C3H5O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Propionate (n-C3:0)

193895
type: SpeciesReference
stoichiometry: 1.0
species: 718503

193907
type: SpeciesReference
stoichiometry: 1.0
species: 718669

193931
type: SpeciesReference
stoichiometry: 1.0
species: 718391

718391
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: AMP

193943
type: SpeciesReference
stoichiometry: 1.0
species: 719404

719133
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Ferricytochrome c

724153
type: Reaction
reactant: 208619
reactant: 208631
notes: GENE_ASSOCIATION: ((CRv4_Au5.s9.g15537.t1 and CRv4_Au5.s12.g3518.t1) or (CRv4_Au5.s9.g15537.t1 and CRv4_Au5.s15.g5828.t1)) SUBSYSTEM: Pyruvate metabolism
product: 208655
reversible: false
kinetic law: 208679
name: L-lactate dehydrogenase (cytochrome)
fast: false
product: 208667
product: 208643

208619
type: SpeciesReference
stoichiometry: 2.0
species: 719135

719135
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Ferricytochrome c

208631
type: SpeciesReference
stoichiometry: 1.0
species: 719597

719597
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Lactate

208655
type: SpeciesReference
stoichiometry: 2.0
species: 719404

736914
type: LocalParameter
value: 0.0

736911
type: LocalParameter
value: 0.0

736908
type: LocalParameter
value: 1000.0

736907
type: LocalParameter
value: 0.0

208667
type: SpeciesReference
stoichiometry: 1.0
species: 720254

720254
type: Species
notes: FORMULA: C3H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Pyruvate

208643
type: SpeciesReference
stoichiometry: 2.0
species: 719146

719146
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Ferrocytochrome c

723344
type: Reaction
kinetic law: 166296
product: 166284
product: 166272
reactant: 166260
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8669.t1 or CRv4_Au5.s5.g12035.t1) SUBSYSTEM: Glycolysis / Gluconeogenesis
fast: false
reversible: true
name: fructose-bisphosphate aldolase, mitochondria

732981
type: LocalParameter
value: 0.0

732979
type: LocalParameter
value: 0.0

732978
type: LocalParameter
value: 1000.0

732975
type: LocalParameter
value: -1000.0

166284
type: SpeciesReference
stoichiometry: 1.0
species: 719198

719198
type: Species
notes: FORMULA: C3H5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: D-glyceraldehyde 3-phosphate

166272
type: SpeciesReference
stoichiometry: 1.0
species: 718903

718903
type: Species
notes: FORMULA: C3H5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Dihydroxyacetone phosphate

166260
type: SpeciesReference
stoichiometry: 1.0
species: 719095

719095
type: Species
notes: FORMULA: C6H10O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: beta-D-Fructose 1,6-bisphosphate

719625
type: Species
notes: FORMULA: C18H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: linoleic acid (all cis C18:2) n-6

719322
type: Species
notes: FORMULA: C3H6O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-Glyceraldehyde

717615
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 2-Oxobutanoate

721343
type: Reaction
kinetic law: 094608
product: 094596
reactant: 094584
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
fast: false
reversible: true
name: hydrogen peroxide transport via diffusion, glyoxysome

726795
type: LocalParameter
value: 0.0

726794
type: LocalParameter
value: 0.0

726792
type: LocalParameter
value: 1000.0

726791
type: LocalParameter
value: -1000.0

094596
type: SpeciesReference
stoichiometry: 1.0
species: 719450

719450
type: Species
notes: FORMULA: H2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Hydrogen peroxide

717085
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Glyoxysome

094584
type: SpeciesReference
stoichiometry: 1.0
species: 719442

719442
type: Species
notes: FORMULA: H2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Hydrogen peroxide

723876
type: Reaction
reversible: true
notes: GENE_ASSOCIATION: (CRv4_Au5.s17.g7241.t1 or CRv4_Au5.s9.g15407.t1) SUBSYSTEM: Propanoate metabolism
name: ATP:propanoate phosphotransferase, chloroplast
fast: false
product: 192775
reactant: 192751
product: 192787
kinetic law: 192799
reactant: 192763

192775
type: SpeciesReference
stoichiometry: 1.0
species: 718291

192751
type: SpeciesReference
stoichiometry: 1.0
species: 718501

192787
type: SpeciesReference
stoichiometry: 1.0
species: 720164

720164
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Propanoyl phosphate

735202
type: LocalParameter
value: 0.0

735201
type: LocalParameter
value: 0.0

735199
type: LocalParameter
value: 1000.0

735198
type: LocalParameter
value: -1000.0

192763
type: SpeciesReference
stoichiometry: 1.0
species: 720159

720159
type: Species
notes: FORMULA: C3H5O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Propionate (n-C3:0)

718975
type: Species
notes: FORMULA: C107H180N2O47P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man(3-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man

723163
type: Reaction
kinetic law: 159927
product: 159915
name: CDP-ethanolamine: diacylglycerol ethanolamine phosphotransferase (18:1(11Z)/18:1(9Z))
reactant: 159879
product: 159891
reactant: 159867
product: 159903
reversible: false
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3833.t1 SUBSYSTEM: Glycerophospholipid metabolism

732341
type: LocalParameter
value: 0.0

732338
type: LocalParameter
value: 0.0

732336
type: LocalParameter
value: 1000.0

732335
type: LocalParameter
value: 0.0

159915
type: SpeciesReference
stoichiometry: 1.0
species: 720036

720036
type: Species
notes: FORMULA: C41H78NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:1(11Z)/18:1(9Z))

159879
type: SpeciesReference
stoichiometry: 1.0
species: 718599

718599
type: Species
notes: FORMULA: C11H19N4O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: CDPethanolamine

159891
type: SpeciesReference
stoichiometry: 1.0
species: 718647

718647
type: Species
notes: FORMULA: C9H12N3O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: CMP

159867
type: SpeciesReference
stoichiometry: 1.0
species: 717109

717109
type: Species
notes: FORMULA: C39H72O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1-(11Z)-octadecenoyl,2-(9Z)-octadecenoyl, 18:1(11Z)/18:1(9Z))

159903
type: SpeciesReference
stoichiometry: 1.0
species: 719394

718667
type: Species
notes: FORMULA: C21H32N7O16P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Coenzyme A

724156
type: Reaction
name: L-lactate dehydrogenase
reactant: 208764
notes: GENE_ASSOCIATION: SUBSYSTEM: Pyruvate metabolism
product: 208800
kinetic law: 208824
product: 208812
product: 208788
reversible: true
fast: false
reactant: 208776

208764
type: SpeciesReference
stoichiometry: 1.0
species: 719595

719595
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Lactate

208800
type: SpeciesReference
stoichiometry: 1.0
species: 719814

719814
type: Species
notes: FORMULA: C21H27N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Nicotinamide adenine dinucleotide - reduced

736930
type: LocalParameter
value: 0.0

736927
type: LocalParameter
value: 0.0

736924
type: LocalParameter
value: 1000.0

736923
type: LocalParameter
value: -1000.0

208812
type: SpeciesReference
stoichiometry: 1.0
species: 720252

720252
type: Species
notes: FORMULA: C3H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Pyruvate

208788
type: SpeciesReference
stoichiometry: 1.0
species: 719402

208776
type: SpeciesReference
stoichiometry: 1.0
species: 719804

719804
type: Species
notes: FORMULA: C21H26N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Nicotinamide adenine dinucleotide

721525
type: Reaction
product: 099083
name: Dicarboxylate/tricarboxylate carrier (oaa:akg), mitochondrial
reversible: true
product: 099095
reactant: 099059
kinetic law: 099107
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6506.t1 SUBSYSTEM: Transport, mitochondria
reactant: 099071
fast: false

099083
type: SpeciesReference
stoichiometry: 1.0
species: 718329

718329
type: Species
notes: FORMULA: C5H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2-Oxoglutarate

099095
type: SpeciesReference
stoichiometry: 1.0
species: 719895

719895
type: Species
notes: FORMULA: C4H2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Oxaloacetate

099059
type: SpeciesReference
stoichiometry: 1.0
species: 718333

718333
type: Species
notes: FORMULA: C5H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 2-Oxoglutarate

727250
type: LocalParameter
value: 0.0

727249
type: LocalParameter
value: 0.0

727247
type: LocalParameter
value: 1000.0

727246
type: LocalParameter
value: -1000.0

099071
type: SpeciesReference
stoichiometry: 1.0
species: 719891

719891
type: Species
notes: FORMULA: C4H2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Oxaloacetate

719547
type: Species
notes: FORMULA: C16H32O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Hexadecanal

720665
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Zeaxanthin

717083
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Thylakoid Lumen

722994
type: Reaction
reactant: 154025
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reactant: 154013
kinetic law: 154062
reversible: false
product: 154049
name: phospholipid: diacylglycerol acyltransferase (18:1(11Z))
product: 154037

154025
type: SpeciesReference
stoichiometry: 1.0
species: 719960

719960
type: Species
notes: FORMULA: C39H71O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(11Z)-octadecenoyl,2-(11Z)-octadecenoyl-sn-glycerol 3-phosphate

154013
type: SpeciesReference
stoichiometry: 1.0
species: 717121

717121
type: Species
notes: FORMULA: C39H72O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1,2-di-(9Z)-octadecenoyl, 18:1(9Z)/18:1(9Z))

731710
type: LocalParameter
value: 0.0

731708
type: LocalParameter
value: 0.0

731706
type: LocalParameter
value: 1000.0

731704
type: LocalParameter
value: 0.0

154049
type: SpeciesReference
stoichiometry: 1.0
species: 720459

720459
type: Species
notes: FORMULA: C57H104O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (18:1(9Z)/18:1(9Z)/18:1(11Z))

154037
type: SpeciesReference
stoichiometry: 1.0
species: 717167

717167
type: Species
notes: FORMULA: C21H39O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-octadec-11-enoyl-sn-glycerol 3-phosphate

723429
type: Reaction
fast: false
name: Formyltetrahydrofolate deformylase
product: 168853
reactant: 168817
kinetic law: 168865
product: 168829
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g257.t1 or CRv4_Au5.s12.g4273.t1) SUBSYSTEM: Glyoxylate metabolism
reactant: 168805
product: 168841

168853
type: SpeciesReference
stoichiometry: 1.0
species: 720488

720488
type: Species
notes: FORMULA: C19H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5,6,7,8-Tetrahydrofolate

168817
type: SpeciesReference
stoichiometry: 1.0
species: 719424

733260
type: LocalParameter
value: 0.0

733259
type: LocalParameter
value: 0.0

733256
type: LocalParameter
value: 1000.0

733255
type: LocalParameter
value: 0.0

168829
type: SpeciesReference
stoichiometry: 1.0
species: 719152

719152
type: Species
notes: FORMULA: CHO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Formate

168805
type: SpeciesReference
stoichiometry: 1.0
species: 717086

717086
type: Species
notes: FORMULA: C20H21N7O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 10-Formyltetrahydrofolate

168841
type: SpeciesReference
stoichiometry: 1.0
species: 719394

722484
type: Reaction
kinetic law: 130336
fast: false
product: 130324
reversible: false
reactant: 130288
name: melibiose galactohydrolase (glc-B)
product: 130312
reactant: 130300
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Galactose metabolism

729970
type: LocalParameter
value: 0.0

729968
type: LocalParameter
value: 0.0

729967
type: LocalParameter
value: 1000.0

729966
type: LocalParameter
value: 0.0

130324
type: SpeciesReference
stoichiometry: 1.0
species: 719264

719264
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: beta-D-glucose

130288
type: SpeciesReference
stoichiometry: 1.0
species: 719430

130312
type: SpeciesReference
stoichiometry: 1.0
species: 719214

130300
type: SpeciesReference
stoichiometry: 1.0
species: 719681

719681
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Melibiose

718589
type: Species
notes: FORMULA: C9H12N3O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: CDP

724209
type: Reaction
product: 211440
reactant: 211404
notes: GENE_ASSOCIATION: CRv4_Au5.s60.g12367.t1 SUBSYSTEM: Selenoamino acid metabolism
name: O-Acetylhomoserine succinate-lyase (adding cysteine), cytosol
kinetic law: 211452
reversible: false
product: 211428
fast: false
reactant: 211416

211440
type: SpeciesReference
stoichiometry: 1.0
species: 720317

720317
type: Species
notes: FORMULA: C7H14N2O4Se
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Selenocystathionine

211404
type: SpeciesReference
stoichiometry: 1.0
species: 718247

718247
type: Species
notes: FORMULA: C6H11NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: O-Acetyl-L-homoserine

737179
type: LocalParameter
value: 0.0

737178
type: LocalParameter
value: 0.0

737176
type: LocalParameter
value: 1000.0

737175
type: LocalParameter
value: 0.0

211428
type: SpeciesReference
stoichiometry: 1.0
species: 718185

718185
type: Species
notes: FORMULA: C2H3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Acetate

211416
type: SpeciesReference
stoichiometry: 1.0
species: 720312

720312
type: Species
notes: FORMULA: C3H6NO2Se
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Selenocysteine

719292
type: Species
notes: FORMULA: C5H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: L-Glutamate 5-semialdehyde

719933
type: Species
notes: FORMULA: C5H13N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Ornithine

722439
type: Reaction
kinetic law: 128443
reversible: false
product: 128431
product: 128419
reactant: 128407
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9395.t1 SUBSYSTEM: Folate biosynthesis
fast: false
name: ATP:2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine 6'-pyrophosphotransferase
reactant: 128395

729820
type: LocalParameter
value: 0.0

729818
type: LocalParameter
value: 0.0

729817
type: LocalParameter
value: 1000.0

729816
type: LocalParameter
value: 0.0

128431
type: SpeciesReference
stoichiometry: 1.0
species: 718387

718387
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: AMP

128419
type: SpeciesReference
stoichiometry: 1.0
species: 717217

717217
type: Species
notes: FORMULA: C7H9N5O8P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2-Amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine

128407
type: SpeciesReference
stoichiometry: 1.0
species: 718497

718497
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: ATP

128395
type: SpeciesReference
stoichiometry: 1.0
species: 717219

717219
type: Species
notes: FORMULA: C7H9N5O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine

720525
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: tRNA(Asn)

720599
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: UDP-galactose

722731
type: Reaction
product: 142067
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
reactant: 142007
product: 142055
product: 142031
reversible: false
name: omega-6 desaturase (18:1(9Z)/16:2(7Z,10Z)) (DGDG)
product: 142043
kinetic law: 142079
reactant: 141995
reactant: 141983
reactant: 142019
fast: false

142067
type: SpeciesReference
stoichiometry: 4.0
species: 719823

719823
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Nicotinamide adenine dinucleotide phosphate

142007
type: SpeciesReference
stoichiometry: 4.0
species: 719835

719835
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Nicotinamide adenine dinucleotide phosphate - reduced

142055
type: SpeciesReference
stoichiometry: 2.0
species: 719430

142031
type: SpeciesReference
stoichiometry: 1.0
species: 718797

718797
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Digalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-(7Z,10Z)-hexadecadienoyl, 18:1(9Z)/16:2(7Z,10Z))

142043
type: SpeciesReference
stoichiometry: 1.0
species: 719107

719107
type: Species
notes: FORMULA: Fe8S8XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Reduced ferredoxin

730804
type: LocalParameter
value: 0.0

730803
type: LocalParameter
value: 0.0

730802
type: LocalParameter
value: 1000.0

730800
type: LocalParameter
value: 0.0

141995
type: SpeciesReference
stoichiometry: 1.0
species: 719099

719099
type: Species
notes: FORMULA: Fe8S8X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Oxidized ferredoxin

141983
type: SpeciesReference
stoichiometry: 1.0
species: 718793

718793
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Digalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-(7Z)-hexadecenoyl, 18:1(9Z)/16:1(7Z))

142019
type: SpeciesReference
stoichiometry: 1.0
species: 719882

719882
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: O2

724283
type: Reaction
reactant: 215243
product: 215279
product: 215267
reversible: true
notes: GENE_ASSOCIATION: SUBSYSTEM: Sulfur metabolism
kinetic law: 215291
fast: false
reactant: 215255
name: Thiosulfate formation, spontaneous

215243
type: SpeciesReference
stoichiometry: 1.0
species: 719532

215279
type: SpeciesReference
stoichiometry: 1.0
species: 720566

720566
type: Species
notes: FORMULA: HS2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Thiosulfate

215267
type: SpeciesReference
stoichiometry: 1.0
species: 719396

719396
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: H+

737482
type: LocalParameter
value: 0.0

737480
type: LocalParameter
value: 0.0

737479
type: LocalParameter
value: 1000.0

737477
type: LocalParameter
value: -1000.0

215255
type: SpeciesReference
stoichiometry: 1.0
species: 720296

720296
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Sulfur

721808
type: Reaction
fast: false
kinetic law: 107714
reversible: true
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3146.t1 SUBSYSTEM: Biosynthesis of steroids
reactant: 107653
reactant: 107666
product: 107702
product: 107678
name: cycloartenol 24-C-methyltransferase
product: 107690

727959
type: LocalParameter
value: 0.0

727958
type: LocalParameter
value: 0.0

727956
type: LocalParameter
value: 1000.0

727955
type: LocalParameter
value: -1000.0

107653
type: SpeciesReference
stoichiometry: 1.0
species: 718371

718371
type: Species
notes: FORMULA: C15H23N6O5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: S-Adenosyl-L-methionine

107666
type: SpeciesReference
stoichiometry: 1.0
species: 718693

718693
type: Species
notes: FORMULA: C30H50O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Cycloartenol

107702
type: SpeciesReference
stoichiometry: 1.0
species: 719684

719684
type: Species
notes: FORMULA: C31H52O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 24-Methylenecycloartanol

107678
type: SpeciesReference
stoichiometry: 1.0
species: 718309

718309
type: Species
notes: FORMULA: C14H20N6O5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: S-Adenosyl-L-homocysteine

107690
type: SpeciesReference
stoichiometry: 1.0
species: 719394

718140
type: Species
notes: FORMULA: C14H17N2O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole

720961
type: Reaction
kinetic law: 084644
product: 084631
reactant: 084619
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: fatty acid transport (18:1(9Z))

725594
type: LocalParameter
value: 0.0

725591
type: LocalParameter
value: 0.0

725588
type: LocalParameter
value: 1000.0

725587
type: LocalParameter
value: -1000.0

084631
type: SpeciesReference
stoichiometry: 1.0
species: 719913

719913
type: Species
notes: FORMULA: C18H33O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: octadecenoate (18:1(9Z))

084619
type: SpeciesReference
stoichiometry: 1.0
species: 719915

719915
type: Species
notes: FORMULA: C18H33O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: octadecenoate (18:1(9Z))

722734
type: Reaction
reactant: 142224
reactant: 142236
reversible: false
fast: false
product: 142284
reactant: 142212
reactant: 142200
kinetic law: 142296
name: omega-6 desaturase (18:2(9Z,12Z)/16:1(7Z)) (DGDG)
product: 142248
product: 142272
product: 142260
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism

142224
type: SpeciesReference
stoichiometry: 4.0
species: 719835

142236
type: SpeciesReference
stoichiometry: 1.0
species: 719882

142284
type: SpeciesReference
stoichiometry: 4.0
species: 719823

142212
type: SpeciesReference
stoichiometry: 1.0
species: 719099

142200
type: SpeciesReference
stoichiometry: 1.0
species: 718793

730814
type: LocalParameter
value: 0.0

730813
type: LocalParameter
value: 0.0

730812
type: LocalParameter
value: 1000.0

730810
type: LocalParameter
value: 0.0

142248
type: SpeciesReference
stoichiometry: 1.0
species: 718805

718805
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Digalactosyldiacylglycerol (1-(9Z,12Z)-octadecadienoyl,2-(7Z)-hexadecenoyl, 18:2(9Z,12Z)/16:1(7Z))

142272
type: SpeciesReference
stoichiometry: 2.0
species: 719430

142260
type: SpeciesReference
stoichiometry: 1.0
species: 719107

719460
type: Species
notes: FORMULA: HCO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Bicarbonate

722695
type: Reaction
kinetic law: 140172
reactant: 140123
product: 140148
reversible: false
name: digalactosyl-diacylglycerol galactohydrolase (18:1(9Z)/16:1(9Z))
product: 140160
fast: false
reactant: 140136
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Glycerolipid metabolism

730684
type: LocalParameter
value: 0.0

730683
type: LocalParameter
value: 0.0

730682
type: LocalParameter
value: 1000.0

730680
type: LocalParameter
value: 0.0

140123
type: SpeciesReference
stoichiometry: 1.0
species: 718795

718795
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Digalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-(9Z)-hexadecenoyl, 18:1(9Z)/16:1(9Z))

140148
type: SpeciesReference
stoichiometry: 1.0
species: 719214

140160
type: SpeciesReference
stoichiometry: 1.0
species: 719714

719714
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-(9Z)-hexadecenoyl, 18:1(9Z)/16:1(9Z))

140136
type: SpeciesReference
stoichiometry: 1.0
species: 719430

720626
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (-)-Ureidoglycolate

722766
type: Reaction
fast: false
kinetic law: 144189
reactant: 144117
reactant: 144129
product: 144153
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1717.t1 or CRv4_Au5.s1.g1718.t1 or CRv4_Au5.s1.g1719.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
reactant: 144141
reversible: false
product: 144177
product: 144165
name: linoleate desaturase (18:2(9Z,12Z)/18:4(5Z,9Z,12Z,15Z))

730919
type: LocalParameter
value: 0.0

730918
type: LocalParameter
value: 0.0

730917
type: LocalParameter
value: 1000.0

730915
type: LocalParameter
value: 0.0

144117
type: SpeciesReference
stoichiometry: 1.0
species: 718877

718877
type: Species
notes: FORMULA: C46H79NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:1(9Z)/18:4(5Z,9Z,12Z,15Z))

144129
type: SpeciesReference
stoichiometry: 2.0
species: 719811

719811
type: Species
notes: FORMULA: C21H27N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Nicotinamide adenine dinucleotide - reduced

144153
type: SpeciesReference
stoichiometry: 1.0
species: 718887

718887
type: Species
notes: FORMULA: C46H77NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:2(9Z,12Z)/18:4(5Z,9Z,12Z,15Z))

144141
type: SpeciesReference
stoichiometry: 1.0
species: 719879

719879
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: O2

144177
type: SpeciesReference
stoichiometry: 2.0
species: 719801

144165
type: SpeciesReference
stoichiometry: 2.0
species: 719424

718905
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Dehydroascorbate

723911
type: Reaction
reversible: false
reactant: 195117
name: dGTP:pyruvate 2-O-phosphotransferase, mitochondria
kinetic law: 195177
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3734.t1 or CRv4_Au5.s2.g9759.t1) SUBSYSTEM: Purine metabolism
product: 195165
reactant: 195141
fast: false
reactant: 195129
product: 195153

195117
type: SpeciesReference
stoichiometry: 1.0
species: 718827

735372
type: LocalParameter
value: 0.0

735371
type: LocalParameter
value: 0.0

735369
type: LocalParameter
value: 1000.0

735368
type: LocalParameter
value: 0.0

195165
type: SpeciesReference
stoichiometry: 1.0
species: 720254

195141
type: SpeciesReference
stoichiometry: 1.0
species: 720068

720068
type: Species
notes: FORMULA: C3H2O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Phosphoenolpyruvate

195129
type: SpeciesReference
stoichiometry: 2.0
species: 719404

195153
type: SpeciesReference
stoichiometry: 1.0
species: 718847

723872
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s11.g2426.t1 or CRv4_Au5.s2.g8280.t1 or CRv4_Au5.s2.g8330.t1) SUBSYSTEM: Porphyrin and chlorophyll metabolism
name: uroporphyrinogen decarboxylase (uroporphyrinogen I)
product: 192535
reversible: false
reactant: 192523
product: 192547
kinetic law: 192559
fast: false
reactant: 192511

192535
type: SpeciesReference
stoichiometry: 4.0
species: 718659

718659
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: CO2

192523
type: SpeciesReference
stoichiometry: 1.0
species: 720615

720615
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Uroporphyrinogen I

192547
type: SpeciesReference
stoichiometry: 1.0
species: 718679

718679
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Coproporphyrinogen I

735182
type: LocalParameter
value: 0.0

735181
type: LocalParameter
value: 0.0

735179
type: LocalParameter
value: 1000.0

735178
type: LocalParameter
value: 0.0

192511
type: SpeciesReference
stoichiometry: 4.0
species: 719402

723639
type: Reaction
product: 177109
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4660.t1 SUBSYSTEM: N-Glycan biosynthesis
kinetic law: 177121
name: mannosyl-oligosaccharide glucosidase (asnglcnacglcnacman(man(manman)manman)manmanmanglcglc) (glc-A)
reactant: 177073
product: 177097
reversible: false
reactant: 177085

177109
type: SpeciesReference
stoichiometry: 1.0
species: 719258

719258
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: alpha-D-glucose

734018
type: LocalParameter
value: 0.0

734015
type: LocalParameter
value: 0.0

734014
type: LocalParameter
value: 1000.0

734013
type: LocalParameter
value: 0.0

177073
type: SpeciesReference
stoichiometry: 1.0
species: 718447

718447
type: Species
notes: FORMULA: C93H153N5O73R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Asn(-b1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man(3-a1)Glc(3-a1)Glc(2-a1)Glc

177097
type: SpeciesReference
stoichiometry: 1.0
species: 718445

718445
type: Species
notes: FORMULA: C87H143N5O68R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Asn(-b1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man(3-a1)Glc(3-a1)Glc

177085
type: SpeciesReference
stoichiometry: 1.0
species: 719424

720405
type: Species
notes: FORMULA: C55H102O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (16:0/18:1(11Z)/18:1(11Z))

722990
type: Reaction
product: 153929
reactant: 153905
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reactant: 153893
product: 153917
name: phospholipid: diacylglycerol acyltransferase (16:0)
fast: false
reversible: false
kinetic law: 153941

153929
type: SpeciesReference
stoichiometry: 1.0
species: 720456

720456
type: Species
notes: FORMULA: C55H102O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (18:1(9Z)/18:1(9Z)/16:0)

153905
type: SpeciesReference
stoichiometry: 1.0
species: 719969

719969
type: Species
notes: FORMULA: C37H69O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(9Z)-octadecenoyl,2-hexadecanoyl-sn-glycerol 3-phosphate

153893
type: SpeciesReference
stoichiometry: 1.0
species: 717121

153917
type: SpeciesReference
stoichiometry: 1.0
species: 717171

717171
type: Species
notes: FORMULA: C21H39O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-octadec-9-enoyl-sn-glycerol 3-phosphate

731696
type: LocalParameter
value: 0.0

731694
type: LocalParameter
value: 0.0

731692
type: LocalParameter
value: 1000.0

731690
type: LocalParameter
value: 0.0

717082
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Eyespot

720480
type: Species
notes: FORMULA: C5H5N5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Thioguanine

718158
type: Species
notes: FORMULA: C6H9O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 6-phospho-D-glucono-1,5-lactone

723940
type: Reaction
reactant: 196743
product: 196768
name: ATP phosphohydrolase
fast: false
product: 196780
kinetic law: 196792
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6694.t1 or CRv4_Au5.s1.g1728.t1 or CRv4_Au5.s6.g12868.t1) SUBSYSTEM: Purine metabolism
reactant: 196731
reversible: false
product: 196756

196743
type: SpeciesReference
stoichiometry: 1.0
species: 719424

196768
type: SpeciesReference
stoichiometry: 1.0
species: 719394

196780
type: SpeciesReference
stoichiometry: 1.0
species: 720137

720137
type: Species
notes: FORMULA: HPO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Phosphate

735504
type: LocalParameter
value: 0.0

735502
type: LocalParameter
value: 0.0

735501
type: LocalParameter
value: 1000.0

735500
type: LocalParameter
value: 0.0

196731
type: SpeciesReference
stoichiometry: 1.0
species: 718497

196756
type: SpeciesReference
stoichiometry: 1.0
species: 718287

718287
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: ADP

718839
type: Species
notes: FORMULA: C43H79NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglycerolhomoserine (18:1(9Z)/18:1(9Z))

723826
type: Reaction
product: 189270
fast: false
product: 189282
kinetic law: 189294
reversible: false
name: chlorophyll a synthase (phytyl)
product: 189258
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g13292.t1 SUBSYSTEM: Porphyrin and chlorophyll metabolism
reactant: 189234
reactant: 189246

189270
type: SpeciesReference
stoichiometry: 1.0
species: 719410

719410
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: H+

189282
type: SpeciesReference
stoichiometry: 1.0
species: 720185

720185
type: Species
notes: FORMULA: P2HO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Diphosphate

734952
type: LocalParameter
value: 0.0

734951
type: LocalParameter
value: 0.0

734949
type: LocalParameter
value: 1000.0

734948
type: LocalParameter
value: 0.0

189258
type: SpeciesReference
stoichiometry: 1.0
species: 718603

718603
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Chlorophyll a

189234
type: SpeciesReference
stoichiometry: 1.0
species: 718611

718611
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Chlorophyllide a

189246
type: SpeciesReference
stoichiometry: 1.0
species: 720021

720021
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Phytyl diphosphate

723972
type: Reaction
product: 198887
product: 198875
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3734.t1 or CRv4_Au5.s2.g9759.t1) SUBSYSTEM: Purine metabolism
name: GTP:pyruvate 2-O-phosphotransferase, mitochondria
reversible: false
fast: false
reactant: 198863
reactant: 198839
kinetic law: 198899
reactant: 198851

198887
type: SpeciesReference
stoichiometry: 1.0
species: 720254

198875
type: SpeciesReference
stoichiometry: 1.0
species: 719386

719386
type: Species
notes: FORMULA: C10H12N5O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: GTP

198863
type: SpeciesReference
stoichiometry: 1.0
species: 720068

198839
type: SpeciesReference
stoichiometry: 1.0
species: 719242

719242
type: Species
notes: FORMULA: C10H12N5O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: GDP

735704
type: LocalParameter
value: 0.0

735701
type: LocalParameter
value: 0.0

735698
type: LocalParameter
value: 1000.0

735695
type: LocalParameter
value: 0.0

198851
type: SpeciesReference
stoichiometry: 2.0
species: 719404

724161
type: Reaction
kinetic law: 209078
notes: GENE_ASSOCIATION: (CRv4_Au5.s17.g7027.t1 or CRv4_Au5.s9.g15405.t1) SUBSYSTEM: Pyruvate metabolism
fast: false
reversible: true
reactant: 209042
name: phosphotransacetylase
product: 209054
reactant: 209029
product: 209066

736962
type: LocalParameter
value: 0.0

736959
type: LocalParameter
value: 0.0

736956
type: LocalParameter
value: 1000.0

736955
type: LocalParameter
value: -1000.0

209042
type: SpeciesReference
stoichiometry: 1.0
species: 720141

720141
type: Species
notes: FORMULA: HPO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phosphate

209054
type: SpeciesReference
stoichiometry: 1.0
species: 718267

718267
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Acetyl phosphate

209029
type: SpeciesReference
stoichiometry: 1.0
species: 718227

718227
type: Species
notes: FORMULA: C23H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Acetyl-CoA

209066
type: SpeciesReference
stoichiometry: 1.0
species: 718667

724193
type: Reaction
name: ATP:riboflavin 5'-phosphotransferase
product: 210573
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g5211.t1 or CRv4_Au5.s6.g13629.t1) SUBSYSTEM: Riboflavin metabolism
reactant: 210537
product: 210586
fast: false
kinetic law: 210598
reactant: 210549
product: 210561
reversible: false

210573
type: SpeciesReference
stoichiometry: 1.0
species: 719141

719141
type: Species
notes: FORMULA: C17H18N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: FMN

210537
type: SpeciesReference
stoichiometry: 1.0
species: 718497

210586
type: SpeciesReference
stoichiometry: 1.0
species: 719394

737113
type: LocalParameter
value: 0.0

737112
type: LocalParameter
value: 0.0

737110
type: LocalParameter
value: 1000.0

737109
type: LocalParameter
value: 0.0

210549
type: SpeciesReference
stoichiometry: 1.0
species: 720288

720288
type: Species
notes: FORMULA: C17H19N4O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Riboflavin

210561
type: SpeciesReference
stoichiometry: 1.0
species: 718287

719518
type: Species
notes: FORMULA: C27H40N7O20P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Hydroxymethylglutaryl-CoA

719952
type: Species
notes: FORMULA: C39H71O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-octadecanoyl,2-(9Z,12Z)-octadecadienoyl-sn-glycerol 3-phosphate

717765
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: R-3-hydroxypalmitoyl-[acyl-carrier protein]

721533
type: Reaction
kinetic law: 099323
product: 099311
reactant: 099299
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: protoheme transport (mitochondria)

727270
type: LocalParameter
value: 0.0

727269
type: LocalParameter
value: 0.0

727267
type: LocalParameter
value: 1000.0

727266
type: LocalParameter
value: -1000.0

099311
type: SpeciesReference
stoichiometry: 1.0
species: 720104

720104
type: Species
notes: FORMULA: C34H32FeN4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Protoheme

099299
type: SpeciesReference
stoichiometry: 1.0
species: 720101

720101
type: Species
notes: FORMULA: C34H32FeN4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Protoheme

717738
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-3-Hydroxy-2-methylbutyryl-CoA

724196
type: Reaction
reactant: 210695
product: 210707
kinetic law: 210731
reactant: 210683
product: 210719
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s17.g7623.t1 SUBSYSTEM: Riboflavin metabolism
reactant: 210671
name: 5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase
reversible: false

210695
type: SpeciesReference
stoichiometry: 1.0
species: 719835

210707
type: SpeciesReference
stoichiometry: 1.0
species: 718086

718086
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 5-Amino-6-(5'-phosphoribitylamino)uracil

737124
type: LocalParameter
value: 0.0

737123
type: LocalParameter
value: 0.0

737121
type: LocalParameter
value: 1000.0

737120
type: LocalParameter
value: 0.0

210683
type: SpeciesReference
stoichiometry: 1.0
species: 719402

210719
type: SpeciesReference
stoichiometry: 1.0
species: 719823

210671
type: SpeciesReference
stoichiometry: 1.0
species: 718089

718089
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 5-Amino-6-(5'-phosphoribosylamino)uracil

720657
type: Species
notes: FORMULA: C10H11N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Xanthosine 5'-phosphate

721565
type: Reaction
reversible: false
product: 100093
product: 100105
reactant: 100081
reactant: 100069
name: spermidine:proton symporter (irreversible), mitochondria
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g13244.t1 SUBSYSTEM: Transport, mitochondria
kinetic law: 100117
fast: false

100093
type: SpeciesReference
stoichiometry: 1.0
species: 719404

100105
type: SpeciesReference
stoichiometry: 1.0
species: 720360

720360
type: Species
notes: FORMULA: C7H22N3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Spermidine

100081
type: SpeciesReference
stoichiometry: 1.0
species: 720357

720357
type: Species
notes: FORMULA: C7H22N3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Spermidine

100069
type: SpeciesReference
stoichiometry: 1.0
species: 719394

727350
type: LocalParameter
value: 0.0

727349
type: LocalParameter
value: 0.0

727347
type: LocalParameter
value: 1000.0

727346
type: LocalParameter
value: 0.0

718777
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Dodecanoyl-ACP (n-C12:0ACP)

723267
type: Reaction
kinetic law: 163838
name: amine oxidase, glyoxysomal
notes: GENE_ASSOCIATION: CRv4_Au5.s9.g15260.t1 SUBSYSTEM: Glycine, serine and threonine metabolism
reversible: false
reactant: 163765
reactant: 163789
reactant: 163753
product: 163801
reactant: 163777
product: 163813
product: 163826
fast: false

732706
type: LocalParameter
value: 0.0

732703
type: LocalParameter
value: 0.0

732701
type: LocalParameter
value: 1000.0

732700
type: LocalParameter
value: 0.0

163765
type: SpeciesReference
stoichiometry: 1.0
species: 719412

719412
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: H+

163789
type: SpeciesReference
stoichiometry: 1.0
species: 719888

719888
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: O2

163753
type: SpeciesReference
stoichiometry: 1.0
species: 718182

718182
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Aminoacetone

163801
type: SpeciesReference
stoichiometry: 1.0
species: 719450

163777
type: SpeciesReference
stoichiometry: 1.0
species: 719440

719440
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: H2O

163813
type: SpeciesReference
stoichiometry: 1.0
species: 719789

719789
type: Species
notes: FORMULA: C3H4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Methylglyoxal

163826
type: SpeciesReference
stoichiometry: 1.0
species: 719855

719855
type: Species
notes: FORMULA: NH4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Ammonium

722888
type: Reaction
reactant: 150814
product: 150838
reversible: false
kinetic law: 150850
reactant: 150802
fast: false
product: 150826
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
name: phospholipid: diacylglycerol acyltransferase (18:1(11Z))

150814
type: SpeciesReference
stoichiometry: 1.0
species: 719979

719979
type: Species
notes: FORMULA: C39H71O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(9Z)-octadecenoyl,2-(11Z)-octadecenoyl-sn-glycerol 3-phosphate

150838
type: SpeciesReference
stoichiometry: 1.0
species: 720405

731339
type: LocalParameter
value: 0.0

731337
type: LocalParameter
value: 0.0

731335
type: LocalParameter
value: 1000.0

731333
type: LocalParameter
value: 0.0

150802
type: SpeciesReference
stoichiometry: 1.0
species: 717095

717095
type: Species
notes: FORMULA: C37H70O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1-hexadecanoyl,2-(11Z)-octadecenoyl, 16:0/18:1(11Z))

150826
type: SpeciesReference
stoichiometry: 1.0
species: 717171

718613
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Chlorophyllide b

723299
type: Reaction
reactant: 164910
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g14072.t1 SUBSYSTEM: Glycine, serine and threonine metabolism
product: 164934
reactant: 164898
name: phosphoserine aminotransferase
fast: false
kinetic law: 164946
product: 164922
reversible: false

164910
type: SpeciesReference
stoichiometry: 1.0
species: 719298

719298
type: Species
notes: FORMULA: C5H8NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Glutamate

164934
type: SpeciesReference
stoichiometry: 1.0
species: 720230

720230
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: O-Phospho-L-serine

164898
type: SpeciesReference
stoichiometry: 1.0
species: 717900

717900
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Phosphohydroxypyruvate

732820
type: LocalParameter
value: 0.0

732817
type: LocalParameter
value: 0.0

732815
type: LocalParameter
value: 1000.0

732814
type: LocalParameter
value: 0.0

164922
type: SpeciesReference
stoichiometry: 1.0
species: 718331

718331
type: Species
notes: FORMULA: C5H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 2-Oxoglutarate

724217
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s60.g12367.t1 SUBSYSTEM: Selenoamino acid metabolism
reactant: 211836
kinetic law: 211872
product: 211860
reversible: false
reactant: 211824
fast: false
name: O-Phosphorylhomoserine succinate-lyase (adding cysteine), chloroplast
reactant: 211812
product: 211848

211836
type: SpeciesReference
stoichiometry: 1.0
species: 720314

720314
type: Species
notes: FORMULA: C3H6NO2Se
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Selenocysteine

737212
type: LocalParameter
value: 0.0

737211
type: LocalParameter
value: 0.0

737209
type: LocalParameter
value: 1000.0

737208
type: LocalParameter
value: 0.0

211860
type: SpeciesReference
stoichiometry: 1.0
species: 720318

720318
type: Species
notes: FORMULA: C7H14N2O4Se
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Selenocystathionine

211824
type: SpeciesReference
stoichiometry: 1.0
species: 720110

720110
type: Species
notes: FORMULA: C4H8NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: O-Phospho-L-homoserine

211812
type: SpeciesReference
stoichiometry: 1.0
species: 719402

211848
type: SpeciesReference
stoichiometry: 1.0
species: 720141

720278
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: all-trans-Retinol

719669
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: L-Malate

718128
type: Species
notes: FORMULA: C11H15N5O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 5-Methylthioadenosine

724249
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1623.t1 or CRv4_Au5.s13.g4299.t1 or CRv4_Au5.s2.g9153.t1) SUBSYSTEM: Starch and sucrose metabolism
product: 213570
reactant: 213521
name: ATP:D-fructose 6-phosphotransferase
reactant: 213534
reversible: false
kinetic law: 213582
product: 213546
product: 213558
fast: false

213570
type: SpeciesReference
stoichiometry: 1.0
species: 719394

213521
type: SpeciesReference
stoichiometry: 1.0
species: 718497

213534
type: SpeciesReference
stoichiometry: 1.0
species: 719178

719178
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: beta-D-fructose

737344
type: LocalParameter
value: 0.0

737343
type: LocalParameter
value: 0.0

737341
type: LocalParameter
value: 1000.0

737340
type: LocalParameter
value: 0.0

213546
type: SpeciesReference
stoichiometry: 1.0
species: 718287

213558
type: SpeciesReference
stoichiometry: 1.0
species: 719067

719067
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: beta-D-Fructose 6-phosphate

722479
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g101.t1 SUBSYSTEM: Galactose metabolism
product: 130143
product: 130131
kinetic law: 130155
reactant: 130095
reversible: false
reactant: 130107
product: 130119
name: inositol 3-alpha-galactosyltransferase
fast: false

130143
type: SpeciesReference
stoichiometry: 1.0
species: 720584

720584
type: Species
notes: FORMULA: C9H11N2O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: UDP

130131
type: SpeciesReference
stoichiometry: 1.0
species: 719394

729955
type: LocalParameter
value: 0.0

729953
type: LocalParameter
value: 0.0

729952
type: LocalParameter
value: 1000.0

729951
type: LocalParameter
value: 0.0

130095
type: SpeciesReference
stoichiometry: 1.0
species: 719579

719579
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: myo-Inositol

130107
type: SpeciesReference
stoichiometry: 1.0
species: 720599

130119
type: SpeciesReference
stoichiometry: 1.0
species: 717159

717159
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-alpha-D-Galactosyl-myo-inositol

724291
type: Reaction
fast: false
reversible: false
name: citrate synthase, mitochondrial
product: 215653
reactant: 215629
kinetic law: 215677
product: 215665
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3366.t1 SUBSYSTEM: TCA cycle
product: 215641
reactant: 215604
reactant: 215617

215653
type: SpeciesReference
stoichiometry: 1.0
species: 718669

215629
type: SpeciesReference
stoichiometry: 1.0
species: 719895

737515
type: LocalParameter
value: 0.0

737513
type: LocalParameter
value: 0.0

737512
type: LocalParameter
value: 1000.0

737510
type: LocalParameter
value: 0.0

215665
type: SpeciesReference
stoichiometry: 1.0
species: 719404

215641
type: SpeciesReference
stoichiometry: 1.0
species: 718627

718627
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Citrate

215604
type: SpeciesReference
stoichiometry: 1.0
species: 718229

215617
type: SpeciesReference
stoichiometry: 1.0
species: 719432

719432
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: H2O

721816
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Biosynthesis of steroids
kinetic law: 107992
product: 107968
reactant: 107943
reactant: 107930
name: 7-dehydroesmosterol reductase
product: 107980
fast: false
reactant: 107955

727980
type: LocalParameter
value: 0.0

727978
type: LocalParameter
value: 0.0

727977
type: LocalParameter
value: 1000.0

727976
type: LocalParameter
value: 0.0

107968
type: SpeciesReference
stoichiometry: 1.0
species: 718170

718170
type: Species
notes: FORMULA: C27H44O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Cholesta-5,7-dien-3beta-ol

107943
type: SpeciesReference
stoichiometry: 1.0
species: 719394

107930
type: SpeciesReference
stoichiometry: 1.0
species: 718785

718785
type: Species
notes: FORMULA: C27H42O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 7-Dehydrodesmosterol

107980
type: SpeciesReference
stoichiometry: 1.0
species: 719820

719820
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Nicotinamide adenine dinucleotide phosphate

107955
type: SpeciesReference
stoichiometry: 1.0
species: 719832

719832
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Nicotinamide adenine dinucleotide phosphate - reduced

719448
type: Species
notes: FORMULA: H2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Hydrogen peroxide

717080
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Nucleus

721123
type: Reaction
kinetic law: 088714
product: 088702
reactant: 088690
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g312.t1 or CRv4_Au5.s10.g494.t1 or CRv4_Au5.s10.g498.t1 or CRv4_Au5.s6.g13513.t1 or CRv4_Au5.s22.g9816.t1 or CRv4_Au5.s46.g11917.t1) SUBSYSTEM: Transport, extracellular
fast: false
reversible: true
name: nucleobase transport, 6-mercaptopurine (extracellular)

726200
type: LocalParameter
value: 0.0

726199
type: LocalParameter
value: 0.0

726196
type: LocalParameter
value: 1000.0

726195
type: LocalParameter
value: -1000.0

088702
type: SpeciesReference
stoichiometry: 1.0
species: 718143

718143
type: Species
notes: FORMULA: C5H4N4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 6-Mercaptopurine

088690
type: SpeciesReference
stoichiometry: 1.0
species: 718146

718146
type: Species
notes: FORMULA: C5H4N4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: 6-Mercaptopurine

723618
type: Reaction
product: 176123
product: 176099
product: 176111
kinetic law: 176135
reversible: false
reactant: 176075
fast: false
name: alpha-1,3-glucosyltransferase (doldpglcnacglcnacman(man(manman)manman)manmanmanglc)
notes: GENE_ASSOCIATION: SUBSYSTEM: N-Glycan biosynthesis
reactant: 176087

176123
type: SpeciesReference
stoichiometry: 1.0
species: 719394

176099
type: SpeciesReference
stoichiometry: 1.0
species: 718965

718965
type: Species
notes: FORMULA: C131H220N2O67P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man(3-a1)Glc

176111
type: SpeciesReference
stoichiometry: 1.0
species: 718987

718987
type: Species
notes: FORMULA: C55H91O4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dolichol phosphate

733943
type: LocalParameter
value: 0.0

733941
type: LocalParameter
value: 0.0

733940
type: LocalParameter
value: 1000.0

733939
type: LocalParameter
value: 0.0

176075
type: SpeciesReference
stoichiometry: 1.0
species: 718963

718963
type: Species
notes: FORMULA: C125H210N2O62P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man

176087
type: SpeciesReference
stoichiometry: 1.0
species: 718989

718989
type: Species
notes: FORMULA: C61H102O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dolichyl beta-D-glucosyl phosphate

719793
type: Species
notes: FORMULA: Na
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Sodium

721305
type: Reaction
reversible: false
product: 093765
product: 093741
kinetic law: 093777
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
reactant: 093705
name: fatty acyl-CoA peroxisomal transport via ABC system (4:0)
product: 093729
reactant: 093717
reactant: 093693
product: 093753

093765
type: SpeciesReference
stoichiometry: 1.0
species: 720137

093741
type: SpeciesReference
stoichiometry: 1.0
species: 718535

718535
type: Species
notes: FORMULA: C25H38N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Butanoyl-CoA

726700
type: LocalParameter
value: 0.0

726699
type: LocalParameter
value: 0.0

726697
type: LocalParameter
value: 1000.0

726696
type: LocalParameter
value: 0.0

093705
type: SpeciesReference
stoichiometry: 1.0
species: 718541

718541
type: Species
notes: FORMULA: C25H38N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Butanoyl-CoA

093729
type: SpeciesReference
stoichiometry: 1.0
species: 718287

093717
type: SpeciesReference
stoichiometry: 1.0
species: 719424

093693
type: SpeciesReference
stoichiometry: 1.0
species: 718497

093753
type: SpeciesReference
stoichiometry: 1.0
species: 719394

720170
type: Species
notes: FORMULA: C24H36N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Propanoyl-CoA

722628
type: Reaction
reversible: false
reactant: 136724
reactant: 136712
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9504.t1 SUBSYSTEM: Glycerolipid metabolism
kinetic law: 136761
product: 136736
fast: false
product: 136749
name: 1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase ((9Z)-C18:1) (CoA substrate)

136724
type: SpeciesReference
stoichiometry: 1.0
species: 719916

719916
type: Species
notes: FORMULA: C39H64N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (9Z)-octadecenoyl-coa

136712
type: SpeciesReference
stoichiometry: 1.0
species: 717163

717163
type: Species
notes: FORMULA: C19H37O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-hexadecanoyl-sn-glycerol 3-phosphate

730450
type: LocalParameter
value: 0.0

730448
type: LocalParameter
value: 0.0

730447
type: LocalParameter
value: 1000.0

730446
type: LocalParameter
value: 0.0

136736
type: SpeciesReference
stoichiometry: 1.0
species: 718665

718665
type: Species
notes: FORMULA: C21H32N7O16P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Coenzyme A

136749
type: SpeciesReference
stoichiometry: 1.0
species: 719946

719946
type: Species
notes: FORMULA: C37H69O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-hexadecanoyl,2-(9Z)-octadecenoyl-sn-glycerol 3-phosphate

721845
type: Reaction
kinetic law: 108878
product: 108866
reactant: 108854
notes: GENE_ASSOCIATION: (CRv4_Au5.s8.g15097.t1 or CRv4_Au5.s44.g11901.t1) SUBSYSTEM: Biosynthesis of steroids
fast: false
reversible: false
name: isopentenyl-diphosphate Delta-isomerase

728086
type: LocalParameter
value: 0.0

728083
type: LocalParameter
value: 0.0

728080
type: LocalParameter
value: 1000.0

728077
type: LocalParameter
value: 0.0

108866
type: SpeciesReference
stoichiometry: 1.0
species: 718939

718939
type: Species
notes: FORMULA: C5H9O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dimethylallyl diphosphate

108854
type: SpeciesReference
stoichiometry: 1.0
species: 719583

719583
type: Species
notes: FORMULA: C5H9O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Isopentenyl diphosphate

723647
type: Reaction
reactant: 177446
product: 177470
reactant: 177434
kinetic law: 177482
fast: false
product: 177458
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g14169.t1 SUBSYSTEM: N-Glycan biosynthesis
name: mannosyl-oligosaccharide 1,2-alpha-mannosidase (asnglcnacglcnacman(man(man)man)man)

177446
type: SpeciesReference
stoichiometry: 4.0
species: 719424

177470
type: SpeciesReference
stoichiometry: 4.0
species: 719670

719670
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-Mannose

177434
type: SpeciesReference
stoichiometry: 1.0
species: 718441

718441
type: Species
notes: FORMULA: C75H123N5O58R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Asn(-b1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man

734053
type: LocalParameter
value: 0.0

734051
type: LocalParameter
value: 0.0

734050
type: LocalParameter
value: 1000.0

734049
type: LocalParameter
value: 0.0

177458
type: SpeciesReference
stoichiometry: 1.0
species: 718453

718453
type: Species
notes: FORMULA: C51H83N5O38R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Asn(-b1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man](3-a1)Man](3-a1)Man

721561
type: Reaction
reactant: 099949
product: 099985
name: Amino acid transporter (ser-L), mitochondrial
reactant: 099961
fast: false
reversible: true
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1788.t1 or CRv4_Au5.s7.g14019.t1) SUBSYSTEM: Transport, mitochondria
kinetic law: 099997
product: 099973

099949
type: SpeciesReference
stoichiometry: 1.0
species: 719394

099985
type: SpeciesReference
stoichiometry: 1.0
species: 720336

720336
type: Species
notes: FORMULA: C3H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Serine

099961
type: SpeciesReference
stoichiometry: 1.0
species: 720333

720333
type: Species
notes: FORMULA: C3H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Serine

727340
type: LocalParameter
value: 0.0

727339
type: LocalParameter
value: 0.0

727337
type: LocalParameter
value: 1000.0

727336
type: LocalParameter
value: -1000.0

099973
type: SpeciesReference
stoichiometry: 1.0
species: 719404

723679
type: Reaction
fast: false
reversible: false
reactant: 179268
notes: GENE_ASSOCIATION: ((CRv4_Au5.s10.g816.t1 and CRv4_Au5.s12.g4121.t1) or (CRv4_Au5.s10.g816.t1 and CRv4_Au5.s3.g11019.t1)) SUBSYSTEM: Nitrogen metabolism
product: 179280
product: 179292
reactant: 179244
reactant: 179256
product: 179304
kinetic law: 179316
name: glycine synthase
reactant: 179232

179268
type: SpeciesReference
stoichiometry: 1.0
species: 719852

719852
type: Species
notes: FORMULA: NH4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Ammonium

179280
type: SpeciesReference
stoichiometry: 1.0
species: 719318

719318
type: Species
notes: FORMULA: C2H5NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Glycine

179292
type: SpeciesReference
stoichiometry: 1.0
species: 719805

719805
type: Species
notes: FORMULA: C21H26N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Nicotinamide adenine dinucleotide

179244
type: SpeciesReference
stoichiometry: 1.0
species: 719774

719774
type: Species
notes: FORMULA: C20H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 5,10-Methylenetetrahydrofolate

179256
type: SpeciesReference
stoichiometry: 1.0
species: 719816

719816
type: Species
notes: FORMULA: C21H27N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Nicotinamide adenine dinucleotide - reduced

179304
type: SpeciesReference
stoichiometry: 1.0
species: 720491

720491
type: Species
notes: FORMULA: C19H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 5,6,7,8-Tetrahydrofolate

734173
type: LocalParameter
value: 0.0

734171
type: LocalParameter
value: 0.0

734170
type: LocalParameter
value: 1000.0

734169
type: LocalParameter
value: 0.0

179232
type: SpeciesReference
stoichiometry: 1.0
species: 718661

718661
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: CO2

718041
type: Species
notes: FORMULA: C28H46O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 4alpha-Methylzymosterol

719843
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Nicotinamide adenine dinucleotide phosphate - reduced

722511
type: Reaction
product: 131469
reactant: 131445
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g9452.t1 or CRv4_Au5.s6.g12638.t1) SUBSYSTEM: Glutamate metabolism
product: 131457
kinetic law: 131481
reactant: 131433
fast: false
name: glutathione-disulfide reductase (NADP), mitochondria
reactant: 131421

131469
type: SpeciesReference
stoichiometry: 1.0
species: 719825

719825
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Nicotinamide adenine dinucleotide phosphate

131445
type: SpeciesReference
stoichiometry: 1.0
species: 719837

719837
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Nicotinamide adenine dinucleotide phosphate - reduced

131457
type: SpeciesReference
stoichiometry: 2.0
species: 719378

719378
type: Species
notes: FORMULA: C10H15N3O6S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Reduced glutathione

730060
type: LocalParameter
value: 0.0

730058
type: LocalParameter
value: 0.0

730057
type: LocalParameter
value: 1000.0

730056
type: LocalParameter
value: 0.0

131433
type: SpeciesReference
stoichiometry: 1.0
species: 719404

131421
type: SpeciesReference
stoichiometry: 1.0
species: 719370

719370
type: Species
notes: FORMULA: C20H28N6O12S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Oxidized glutathione

723202
type: Reaction
product: 161402
notes: GENE_ASSOCIATION: (CRv4_Au5.s11.g2527.t1 or CRv4_Au5.s13.g5152.t1) SUBSYSTEM: Glycerophospholipid metabolism
product: 161414
reactant: 161378
name: phosphatidylglycerolphosphate synthase (18:1(11Z)/16:0)
reactant: 161390
fast: false
reversible: false
kinetic law: 161426

161402
type: SpeciesReference
stoichiometry: 1.0
species: 718647

161414
type: SpeciesReference
stoichiometry: 1.0
species: 720087

720087
type: Species
notes: FORMULA: C40H78O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Phosphatidylglycerophosphate (1-(11Z)-octadecenoyl,2-hexadecanoyl, 18:1(11Z)/16:0)

161378
type: SpeciesReference
stoichiometry: 1.0
species: 718591

718591
type: Species
notes: FORMULA: C46H83N3O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: CDP-1-(9Z)-octadecenoyl,2-hexadecanoyl-sn-glycerol

161390
type: SpeciesReference
stoichiometry: 1.0
species: 719330

719330
type: Species
notes: FORMULA: C3H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Glycerol 3-phosphate

732474
type: LocalParameter
value: 0.0

732471
type: LocalParameter
value: 0.0

732469
type: LocalParameter
value: 1000.0

732468
type: LocalParameter
value: 0.0

722689
type: Reaction
reactant: 139810
reactant: 139822
fast: false
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
reversible: false
kinetic law: 139882
product: 139834
reactant: 139798
name: digalatcosyldiacylglycerol palmitate delta7-desaturase (18:1(9Z)/16:1(7Z))
product: 139846
reactant: 139786
product: 139870
product: 139858

139810
type: SpeciesReference
stoichiometry: 4.0
species: 719835

139822
type: SpeciesReference
stoichiometry: 1.0
species: 719882

730664
type: LocalParameter
value: 0.0

730663
type: LocalParameter
value: 0.0

730662
type: LocalParameter
value: 1000.0

730660
type: LocalParameter
value: 0.0

139834
type: SpeciesReference
stoichiometry: 1.0
species: 718793

139798
type: SpeciesReference
stoichiometry: 1.0
species: 719099

139846
type: SpeciesReference
stoichiometry: 1.0
species: 719107

139786
type: SpeciesReference
stoichiometry: 1.0
species: 718791

718791
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Digalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

139870
type: SpeciesReference
stoichiometry: 4.0
species: 719823

139858
type: SpeciesReference
stoichiometry: 2.0
species: 719430

720186
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Protoporphyrin IX

724213
type: Reaction
product: 211644
reversible: true
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6764.t1 or CRv4_Au5.s16.g6764.t2 or CRv4_Au5.s3.g10608.t1) SUBSYSTEM: Selenoamino acid metabolism
fast: false
reactant: 211608
kinetic law: 211656
product: 211620
product: 211632
name: O3-Acetyl-L-serine acetate-lyase (adding hydrogen sulfide), chloroplast
reactant: 211596

211644
type: SpeciesReference
stoichiometry: 1.0
species: 720314

211608
type: SpeciesReference
stoichiometry: 1.0
species: 720324

720324
type: Species
notes: FORMULA: H2Se
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Selenide

737196
type: LocalParameter
value: 0.0

737194
type: LocalParameter
value: 0.0

737193
type: LocalParameter
value: 1000.0

737191
type: LocalParameter
value: -1000.0

211620
type: SpeciesReference
stoichiometry: 1.0
species: 718191

211632
type: SpeciesReference
stoichiometry: 2.0
species: 719402

211596
type: SpeciesReference
stoichiometry: 1.0
species: 718261

724245
type: Reaction
product: 213377
reactant: 213353
product: 213389
reversible: false
product: 213401
reactant: 213365
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3675.t1 SUBSYSTEM: Sphingolipid metabolism
fast: false
kinetic law: 213413
name: sphingosine kinase

213377
type: SpeciesReference
stoichiometry: 1.0
species: 718287

213353
type: SpeciesReference
stoichiometry: 1.0
species: 718497

213389
type: SpeciesReference
stoichiometry: 1.0
species: 719394

213401
type: SpeciesReference
stoichiometry: 1.0
species: 720356

720356
type: Species
notes: FORMULA: C18H37NO5P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sphingosine 1-phosphate

213365
type: SpeciesReference
stoichiometry: 1.0
species: 720354

720354
type: Species
notes: FORMULA: C18H38NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sphingosine

737328
type: LocalParameter
value: 0.0

737326
type: LocalParameter
value: 0.0

737325
type: LocalParameter
value: 1000.0

737323
type: LocalParameter
value: 0.0

723866
type: Reaction
reversible: true
fast: false
kinetic law: 192198
reactant: 192150
product: 192186
notes: GENE_ASSOCIATION: SUBSYSTEM: Porphyrin and chlorophyll metabolism
reactant: 192138
product: 192162
product: 192174
name: uroporphyrinogen I reductase

735152
type: LocalParameter
value: 0.0

735151
type: LocalParameter
value: 0.0

735149
type: LocalParameter
value: 1000.0

735148
type: LocalParameter
value: -1000.0

192150
type: SpeciesReference
stoichiometry: 1.0
species: 720615

192186
type: SpeciesReference
stoichiometry: 1.0
species: 720612

720612
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Uroporphyrin I

192138
type: SpeciesReference
stoichiometry: 1.0
species: 719835

192162
type: SpeciesReference
stoichiometry: 7.0
species: 719402

192174
type: SpeciesReference
stoichiometry: 1.0
species: 719823

717876
type: Species
notes: FORMULA: C24H34N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-oxopropionyl-CoA

719903
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Octanoyl-ACP (n-C8:0ACP)

722475
type: Reaction
kinetic law: 129963
reactant: 129915
reactant: 129902
product: 129951
product: 129939
fast: false
name: galactose oxidase
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g5073.t1 SUBSYSTEM: Galactose metabolism
reactant: 129890
product: 129927
reversible: false

729940
type: LocalParameter
value: 0.0

729938
type: LocalParameter
value: 0.0

729937
type: LocalParameter
value: 1000.0

729936
type: LocalParameter
value: 0.0

129915
type: SpeciesReference
stoichiometry: 1.0
species: 719885

719885
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: O2

129902
type: SpeciesReference
stoichiometry: 1.0
species: 719434

719434
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: H2O

129951
type: SpeciesReference
stoichiometry: 1.0
species: 719448

129939
type: SpeciesReference
stoichiometry: 1.0
species: 719406

719406
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: H+

129890
type: SpeciesReference
stoichiometry: 1.0
species: 719216

719216
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: D-Galactose

129927
type: SpeciesReference
stoichiometry: 1.0
species: 719222

719222
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: D-Galactonate

718949
type: Species
notes: FORMULA: C21H24N6O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Deamino-NAD+

717131
type: Species
notes: FORMULA: C3H4O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717074
name: 3-Phospho-D-glyceroyl phosphate

717074
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Flagellum

722308
type: Reaction
kinetic law: 122479
product: 122455
fast: false
product: 122442
reactant: 122418
product: 122467
name: oleoyl-[acyl-carrier-protein] hydrolase ((11Z)-n-C18:1)
reversible: false
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s6.g12531.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s9.g15253.t1)) SUBSYSTEM: Fatty acid biosynthesis
reactant: 122430

729348
type: LocalParameter
value: 0.0

729346
type: LocalParameter
value: 0.0

729345
type: LocalParameter
value: 1000.0

729343
type: LocalParameter
value: 0.0

122455
type: SpeciesReference
stoichiometry: 1.0
species: 719402

122442
type: SpeciesReference
stoichiometry: 1.0
species: 718257

718257
type: Species
notes: FORMULA: HSR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: acyl carrier protein

122418
type: SpeciesReference
stoichiometry: 1.0
species: 719430

122467
type: SpeciesReference
stoichiometry: 1.0
species: 719919

719919
type: Species
notes: FORMULA: C18H33O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: octadecenoate (18:1(11Z))

122430
type: SpeciesReference
stoichiometry: 1.0
species: 719925

719925
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: cis-octadec-11-enoyl-[acyl-carrier protein] ((11Z)-n-C18:1)

722770
type: Reaction
fast: false
name: linoleate desaturase (18:3(9Z,12Z,15Z)/18:1(9Z))
reactant: 144372
reactant: 144384
kinetic law: 144444
product: 144420
reactant: 144396
product: 144408
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1717.t1 or CRv4_Au5.s1.g1718.t1 or CRv4_Au5.s1.g1719.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
product: 144432

144372
type: SpeciesReference
stoichiometry: 1.0
species: 718881

718881
type: Species
notes: FORMULA: C46H83NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:2(9Z,12Z)/18:1(9Z))

144384
type: SpeciesReference
stoichiometry: 2.0
species: 719811

730934
type: LocalParameter
value: 0.0

730933
type: LocalParameter
value: 0.0

730932
type: LocalParameter
value: 1000.0

730930
type: LocalParameter
value: 0.0

144420
type: SpeciesReference
stoichiometry: 2.0
species: 719424

144396
type: SpeciesReference
stoichiometry: 1.0
species: 719879

144408
type: SpeciesReference
stoichiometry: 1.0
species: 718891

718891
type: Species
notes: FORMULA: C46H81NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:3(9Z,12Z,15Z)/18:1(9Z))

144432
type: SpeciesReference
stoichiometry: 2.0
species: 719801

723895
type: Reaction
name: ATP:adenylylsulfate 3'-phosphotransferase
product: 194063
product: 194087
fast: false
reactant: 194039
reversible: false
kinetic law: 194099
reactant: 194051
product: 194075
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6603.t1 SUBSYSTEM: Purine metabolism

194063
type: SpeciesReference
stoichiometry: 1.0
species: 718287

194087
type: SpeciesReference
stoichiometry: 1.0
species: 720009

720009
type: Species
notes: FORMULA: C10H11N5O13P2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3'-Phosphoadenylyl sulfate

194039
type: SpeciesReference
stoichiometry: 1.0
species: 718417

718417
type: Species
notes: FORMULA: C10H12N5O10PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Adenosine 5'-phosphosulfate

735297
type: LocalParameter
value: 0.0

735296
type: LocalParameter
value: 0.0

735294
type: LocalParameter
value: 1000.0

735293
type: LocalParameter
value: 0.0

194051
type: SpeciesReference
stoichiometry: 1.0
species: 718497

194075
type: SpeciesReference
stoichiometry: 1.0
species: 719394

720389
type: Species
notes: FORMULA: C4H4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Succinate

719232
type: Species
notes: FORMULA: C2H4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Glycolaldehyde

717087
type: Species
notes: FORMULA: C20H21N7O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 10-Formyltetrahydrofolate

720951
type: Reaction
kinetic law: 084462
product: 084449
reactant: 084437
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: false
name: beta-fructose 6-phosphate transport, chloroplast

725554
type: LocalParameter
value: 0.0

725551
type: LocalParameter
value: 0.0

725548
type: LocalParameter
value: 1000.0

725547
type: LocalParameter
value: 0.0

084449
type: SpeciesReference
stoichiometry: 1.0
species: 719067

084437
type: SpeciesReference
stoichiometry: 1.0
species: 719069

719069
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: beta-D-Fructose 6-phosphate

720679
type: Reaction
name: spectral decomposition of metal halide lamp
product: 073942
product: 073894
product: 073906
reactant: 073858
reversible: false
product: 073870
kinetic law: 073954
product: 073930
product: 073882
notes: GENE_ASSOCIATION: SUBSYSTEM: Spectral decomposition
product: 073918
fast: false

073942
type: SpeciesReference
stoichiometry: 0.045211338768487
species: 720122

720122
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: photon (662 to 691 nm, red)

073894
type: SpeciesReference
stoichiometry: 0.134003914972887
species: 720116

720116
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: photon (417 to 472 nm, indigo/blue)

073906
type: SpeciesReference
stoichiometry: 0.190838447783888
species: 720117

720117
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: photon (451 to 526 nm, blue/green)

073858
type: SpeciesReference
stoichiometry: 1.0
species: 720123

720123
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: photon (380 to 750 nm, visible spectrum)

073870
type: SpeciesReference
stoichiometry: 0.12093046741464
species: 720113

720113
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: photon (406 to 454 nm, indigo/blue)

724448
type: LocalParameter
value: 0.0

724446
type: LocalParameter
value: 0.0

724445
type: LocalParameter
value: 17.5256

724444
type: LocalParameter
value: 17.5256

073930
type: SpeciesReference
stoichiometry: 0.040192911402728
species: 720120

720120
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: photon (659 to 684 nm, red)

073882
type: SpeciesReference
stoichiometry: 0.191654658116142
species: 720114

720114
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: photon (378 to 482 nm, violet/blue)

073918
type: SpeciesReference
stoichiometry: 0.119049343117245
species: 720119

720119
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: photon (608 to 666 nm, orange/red)

719025
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Divinylprotochlorophyllide a

719166
type: Species
notes: FORMULA: C10H13N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

720224
type: Species
notes: FORMULA: C24H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Propenoyl-CoA

721313
type: Reaction
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
reactant: 093934
product: 093958
product: 093946
name: NADH transport, glyoxysome
reversible: true
kinetic law: 093970
reactant: 093922

093934
type: SpeciesReference
stoichiometry: 1.0
species: 719811

093958
type: SpeciesReference
stoichiometry: 1.0
species: 719819

719819
type: Species
notes: FORMULA: C21H27N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Nicotinamide adenine dinucleotide - reduced

093946
type: SpeciesReference
stoichiometry: 1.0
species: 719412

726720
type: LocalParameter
value: 0.0

726719
type: LocalParameter
value: 0.0

726717
type: LocalParameter
value: 1000.0

726716
type: LocalParameter
value: -1000.0

093922
type: SpeciesReference
stoichiometry: 1.0
species: 719394

722004
type: Reaction
reactant: 112617
kinetic law: 112666
reversible: false
reactant: 112605
name: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
product: 112629
product: 112653
reactant: 112593
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1191.t1 SUBSYSTEM: Carbon fixation
fast: false
product: 112641

112617
type: SpeciesReference
stoichiometry: 1.0
species: 719835

728550
type: LocalParameter
value: 0.0

728548
type: LocalParameter
value: 0.0

728546
type: LocalParameter
value: 1000.0

728545
type: LocalParameter
value: 0.0

112605
type: SpeciesReference
stoichiometry: 1.0
species: 719402

112629
type: SpeciesReference
stoichiometry: 1.0
species: 719196

719196
type: Species
notes: FORMULA: C3H5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: D-glyceraldehyde 3-phosphate

112653
type: SpeciesReference
stoichiometry: 1.0
species: 720141

112593
type: SpeciesReference
stoichiometry: 1.0
species: 717133

717133
type: Species
notes: FORMULA: C3H4O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Phospho-D-glyceroyl phosphate

112641
type: SpeciesReference
stoichiometry: 1.0
species: 719823

719340
type: Species
notes: FORMULA: C2H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Glycolate

724399
type: Reaction
name: branched-chain-amino-acid transaminase, valine forming
reactant: 220884
reversible: false
kinetic law: 220933
product: 220921
product: 220909
fast: false
reactant: 220897
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g799.t1 SUBSYSTEM: Valine, leucine and isoleucine degradation;Valine, leucine and isoleucine biosynthesis

220884
type: SpeciesReference
stoichiometry: 1.0
species: 718329

737951
type: LocalParameter
value: 0.0

737949
type: LocalParameter
value: 0.0

737948
type: LocalParameter
value: 1000.0

737947
type: LocalParameter
value: 0.0

220921
type: SpeciesReference
stoichiometry: 1.0
species: 719296

719296
type: Species
notes: FORMULA: C5H8NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Glutamate

220909
type: SpeciesReference
stoichiometry: 1.0
species: 717798

717798
type: Species
notes: FORMULA: C5H7O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-Methyl-2-oxobutanoate

220897
type: SpeciesReference
stoichiometry: 1.0
species: 720636

720636
type: Species
notes: FORMULA: C5H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Valine

720003
type: Species
notes: FORMULA: C6H11O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (R)-Pantoate

723047
type: Reaction
product: 155914
fast: false
product: 155926
reactant: 155901
name: triacylglycerol acylhydrolase (18:0/18:1(9Z)/16:0)
reversible: false
product: 155938
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
kinetic law: 155950
reactant: 155889

155914
type: SpeciesReference
stoichiometry: 1.0
species: 717101

717101
type: Species
notes: FORMULA: C39H74O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1-octadecanoyl,2-(9Z)-octadecenoyl, 18:0/18:1(9Z))

155926
type: SpeciesReference
stoichiometry: 1.0
species: 719394

155901
type: SpeciesReference
stoichiometry: 1.0
species: 720420

720420
type: Species
notes: FORMULA: C55H104O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (18:0/18:1(9Z)/16:0)

155938
type: SpeciesReference
stoichiometry: 1.0
species: 719470

731922
type: LocalParameter
value: 0.0

731920
type: LocalParameter
value: 0.0

731918
type: LocalParameter
value: 1000.0

731915
type: LocalParameter
value: 0.0

155889
type: SpeciesReference
stoichiometry: 1.0
species: 719424

722668
type: Reaction
reactant: 138620
name: diacylglycerol kinase (18:1(11Z)/18:1(11Z))
kinetic law: 138680
reactant: 138632
product: 138644
product: 138668
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g13684.t1 SUBSYSTEM: Glycerolipid metabolism
fast: false
product: 138656

138620
type: SpeciesReference
stoichiometry: 1.0
species: 717107

717107
type: Species
notes: FORMULA: C39H72O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1,2-di-(11Z)-octadecenoyl, 18:1(11Z)/18:1(11Z))

730593
type: LocalParameter
value: 0.0

730591
type: LocalParameter
value: 0.0

730590
type: LocalParameter
value: 1000.0

730589
type: LocalParameter
value: 0.0

138632
type: SpeciesReference
stoichiometry: 1.0
species: 718497

138644
type: SpeciesReference
stoichiometry: 1.0
species: 718287

138668
type: SpeciesReference
stoichiometry: 1.0
species: 719960

138656
type: SpeciesReference
stoichiometry: 1.0
species: 719394

717735
type: Species
notes: FORMULA: C14H23N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-Hydroxylidocaine

722218
type: Reaction
reactant: 118150
reversible: false
product: 118210
product: 118186
name: 6-thioxanthine 5'-monophosphate:L-glutamine amido-ligase
product: 118162
reactant: 118138
fast: false
reactant: 118126
product: 118174
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8657.t1 SUBSYSTEM: Drug metabolism - other enzymes
reactant: 118114
product: 118198
kinetic law: 118222

118150
type: SpeciesReference
stoichiometry: 1.0
species: 719424

118210
type: SpeciesReference
stoichiometry: 1.0
species: 720179

720179
type: Species
notes: FORMULA: P2HO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Diphosphate

118186
type: SpeciesReference
stoichiometry: 1.0
species: 719296

118162
type: SpeciesReference
stoichiometry: 1.0
species: 718161

718161
type: Species
notes: FORMULA: C10H12N5O7PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 6-Thioguanosine monophosphate

118138
type: SpeciesReference
stoichiometry: 1.0
species: 719270

719270
type: Species
notes: FORMULA: C5H10N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Glutamine

118126
type: SpeciesReference
stoichiometry: 1.0
species: 718497

118174
type: SpeciesReference
stoichiometry: 1.0
species: 718387

118114
type: SpeciesReference
stoichiometry: 1.0
species: 718167

718167
type: Species
notes: FORMULA: C10H11N4O8PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 6-Thioxanthine 5'-monophosphate

118198
type: SpeciesReference
stoichiometry: 2.0
species: 719394

729012
type: LocalParameter
value: 0.0

729010
type: LocalParameter
value: 0.0

729008
type: LocalParameter
value: 1000.0

729007
type: LocalParameter
value: 0.0

718831
type: Species
notes: FORMULA: C41H77NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglycerolhomoserine (16:0/18:1(9Z))

719753
type: Species
notes: FORMULA: C6H8O18P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: 1D-myo-Inositol 1,4,5,6-tetrakisphosphate

719705
type: Species
notes: FORMULA: Mg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Magnesium

720793
type: Reaction
kinetic law: 075463
reactant: 075450
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: D-lactate exchange

724886
type: LocalParameter
value: 0.0

724883
type: LocalParameter
value: 0.0

724880
type: LocalParameter
value: 0.0

724877
type: LocalParameter
value: 0.0

075450
type: SpeciesReference
stoichiometry: 1.0
species: 719592

719592
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: D-Lactate

720669
type: Species
notes: FORMULA: C27H44O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Zymosterol

723687
type: Reaction
kinetic law: 179888
product: 179875
product: 179862
reactant: 179848
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9642.t1 SUBSYSTEM: Nitrogen metabolism;Histidine metabolism
fast: false
reversible: false
name: histidase

734208
type: LocalParameter
value: 0.0

734206
type: LocalParameter
value: 0.0

734205
type: LocalParameter
value: 1000.0

734204
type: LocalParameter
value: 0.0

179875
type: SpeciesReference
stoichiometry: 1.0
species: 720624

720624
type: Species
notes: FORMULA: C6H5N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Urocanate

179862
type: SpeciesReference
stoichiometry: 1.0
species: 719847

179848
type: SpeciesReference
stoichiometry: 1.0
species: 719496

719496
type: Species
notes: FORMULA: C6H9N3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Histidine

723891
type: Reaction
name: Propanoate:CoA ligase (AMP-forming), cytosol
reactant: 193711
product: 193762
fast: false
product: 193774
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s23.g9850.t1 SUBSYSTEM: Propanoate metabolism
reactant: 193737
reactant: 193724
product: 193750
kinetic law: 193787

193711
type: SpeciesReference
stoichiometry: 1.0
species: 718497

193762
type: SpeciesReference
stoichiometry: 1.0
species: 720168

720168
type: Species
notes: FORMULA: C24H36N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Propanoyl-CoA

193774
type: SpeciesReference
stoichiometry: 1.0
species: 720179

193737
type: SpeciesReference
stoichiometry: 1.0
species: 720158

720158
type: Species
notes: FORMULA: C3H5O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Propionate (n-C3:0)

193724
type: SpeciesReference
stoichiometry: 1.0
species: 718665

193750
type: SpeciesReference
stoichiometry: 1.0
species: 718387

735277
type: LocalParameter
value: 0.0

735276
type: LocalParameter
value: 0.0

735274
type: LocalParameter
value: 1000.0

735273
type: LocalParameter
value: 0.0

724151
type: Reaction
reactant: 208510
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g13927.t1 SUBSYSTEM: Pyruvate metabolism
reversible: true
product: 208534
kinetic law: 208559
product: 208522
name: D-lactate dehydrogenase
product: 208546
reactant: 208498
fast: false

208510
type: SpeciesReference
stoichiometry: 1.0
species: 719805

208534
type: SpeciesReference
stoichiometry: 1.0
species: 719816

736898
type: LocalParameter
value: 0.0

736895
type: LocalParameter
value: 0.0

736892
type: LocalParameter
value: 1000.0

736891
type: LocalParameter
value: -1000.0

208522
type: SpeciesReference
stoichiometry: 1.0
species: 719404

208546
type: SpeciesReference
stoichiometry: 1.0
species: 720254

208498
type: SpeciesReference
stoichiometry: 1.0
species: 719594

719594
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: D-Lactate

720071
type: Species
notes: FORMULA: C40H77O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Phosphatidylglycerol (1-(11Z)-octadecenoyl,2-hexadecanoyl, 18:1(11Z)/16:0)

722697
type: Reaction
fast: false
reversible: false
name: digalactosyl-diacylglycerol galactohydrolase (18:1(9Z)/16:2(7Z,10Z))
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Glycerolipid metabolism
product: 140208
product: 140220
reactant: 140184
kinetic law: 140232
reactant: 140196

140208
type: SpeciesReference
stoichiometry: 1.0
species: 719214

140220
type: SpeciesReference
stoichiometry: 1.0
species: 719715

719715
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-(7Z,10Z)-hexadecadienoyl, 18:1(9Z)/16:2(7Z,10Z))

140184
type: SpeciesReference
stoichiometry: 1.0
species: 718797

730689
type: LocalParameter
value: 0.0

730688
type: LocalParameter
value: 0.0

730687
type: LocalParameter
value: 1000.0

730685
type: LocalParameter
value: 0.0

140196
type: SpeciesReference
stoichiometry: 1.0
species: 719430

719883
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: O2

720889
type: Reaction
kinetic law: 083039
product: 083027
reactant: 083015
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: glycerate transport, chloroplast

725306
type: LocalParameter
value: 0.0

725303
type: LocalParameter
value: 0.0

725300
type: LocalParameter
value: 1000.0

725299
type: LocalParameter
value: -1000.0

083027
type: SpeciesReference
stoichiometry: 1.0
species: 717624

717624
type: Species
notes: FORMULA: C3H4O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: D-Glycerate 2-phosphate

083015
type: SpeciesReference
stoichiometry: 1.0
species: 717618

717618
type: Species
notes: FORMULA: C3H4O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-Glycerate 2-phosphate

724253
type: Reaction
reactant: 213738
fast: false
reactant: 213726
product: 213762
product: 213750
kinetic law: 213774
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g2840.t1 or CRv4_Au5.s3.g11038.t1 or CRv4_Au5.s9.g15783.t1) SUBSYSTEM: Starch and sucrose metabolism
name: sucrose alpha-glucohydrolase
reversible: false

213738
type: SpeciesReference
stoichiometry: 1.0
species: 720395

720395
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sucrose

213726
type: SpeciesReference
stoichiometry: 1.0
species: 719424

213762
type: SpeciesReference
stoichiometry: 1.0
species: 719258

213750
type: SpeciesReference
stoichiometry: 1.0
species: 719178

737361
type: LocalParameter
value: 0.0

737359
type: LocalParameter
value: 0.0

737358
type: LocalParameter
value: 1000.0

737356
type: LocalParameter
value: 0.0

722247
type: Reaction
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g10590.t1)) SUBSYSTEM: Fatty acid biosynthesis
name: 3-oxoacyl-[acyl-carrier-protein] reductase ((11Z)-n-C18:1)
fast: false
kinetic law: 119405
reactant: 119369
product: 119393
reactant: 119357
reversible: false
product: 119381

729122
type: LocalParameter
value: 0.0

729121
type: LocalParameter
value: 0.0

729119
type: LocalParameter
value: 1000.0

729118
type: LocalParameter
value: 0.0

119369
type: SpeciesReference
stoichiometry: 1.0
species: 719835

119393
type: SpeciesReference
stoichiometry: 1.0
species: 719823

119357
type: SpeciesReference
stoichiometry: 1.0
species: 717819

717819
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]

119381
type: SpeciesReference
stoichiometry: 1.0
species: 717690

717690
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]

719966
type: Species
notes: FORMULA: C39H67O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(11Z)-octadecenoyl,2-(5Z,9Z,12Z)-octadecatrienoyl-sn-glycerol 3-phosphate

720111
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: photon (281 to 306 nm, UVB)

723874
type: Reaction
kinetic law: 192679
fast: false
reactant: 192643
product: 192667
reactant: 192631
name: 1-aminocyclopropane-1-carboxylate aminohydrolase (isomerizing), mitochondria
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g13823.t1 SUBSYSTEM: Propanoate metabolism
reversible: true
product: 192655

735192
type: LocalParameter
value: 0.0

735191
type: LocalParameter
value: 0.0

735189
type: LocalParameter
value: 1000.0

735188
type: LocalParameter
value: -1000.0

192643
type: SpeciesReference
stoichiometry: 1.0
species: 719432

192667
type: SpeciesReference
stoichiometry: 1.0
species: 719852

192631
type: SpeciesReference
stoichiometry: 1.0
species: 717147

717147
type: Species
notes: FORMULA: C4H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 1-Aminocyclopropane-1-carboxylate

192655
type: SpeciesReference
stoichiometry: 1.0
species: 717615

722879
type: Reaction
reactant: 150393
fast: false
reversible: false
product: 150429
reactant: 150417
product: 150441
kinetic law: 150465
name: linoleate desaturase (18:1(9Z)/18:4(5Z,9Z,12Z,15Z)) (PE)
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1717.t1 or CRv4_Au5.s1.g1718.t1 or CRv4_Au5.s1.g1719.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
product: 150453
reactant: 150405

150393
type: SpeciesReference
stoichiometry: 2.0
species: 719811

150429
type: SpeciesReference
stoichiometry: 2.0
species: 719424

150417
type: SpeciesReference
stoichiometry: 1.0
species: 720054

720054
type: Species
notes: FORMULA: C41H74NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:1(9Z)/18:3(5Z,9Z,12Z))

150441
type: SpeciesReference
stoichiometry: 2.0
species: 719801

731303
type: LocalParameter
value: 0.0

731302
type: LocalParameter
value: 0.0

731301
type: LocalParameter
value: 1000.0

731300
type: LocalParameter
value: 0.0

150453
type: SpeciesReference
stoichiometry: 1.0
species: 720057

720057
type: Species
notes: FORMULA: C41H72NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:1(9Z)/18:4(5Z,9Z,12Z,15Z))

150405
type: SpeciesReference
stoichiometry: 1.0
species: 719879

723424
type: Reaction
product: 168649
product: 168637
kinetic law: 168661
name: ATP citrate synthase
product: 168625
product: 168613
reactant: 168577
reactant: 168601
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8575.t1 and CRv4_Au5.s5.g12182.t1) SUBSYSTEM: Glyoxylate metabolism
fast: false
reactant: 168589
reversible: false

168649
type: SpeciesReference
stoichiometry: 1.0
species: 720137

168637
type: SpeciesReference
stoichiometry: 1.0
species: 719891

733241
type: LocalParameter
value: 0.0

733239
type: LocalParameter
value: 0.0

733238
type: LocalParameter
value: 1000.0

733235
type: LocalParameter
value: 0.0

168625
type: SpeciesReference
stoichiometry: 1.0
species: 718287

168613
type: SpeciesReference
stoichiometry: 1.0
species: 718225

718225
type: Species
notes: FORMULA: C23H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Acetyl-CoA

168577
type: SpeciesReference
stoichiometry: 1.0
species: 718497

168601
type: SpeciesReference
stoichiometry: 1.0
species: 718665

168589
type: SpeciesReference
stoichiometry: 1.0
species: 718625

718625
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Citrate

720588
type: Species
notes: FORMULA: C9H11N2O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: UDP

721523
type: Reaction
kinetic law: 099047
product: 099035
reactant: 099023
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: O2 transport (diffusion)

727245
type: LocalParameter
value: 0.0

727244
type: LocalParameter
value: 0.0

727242
type: LocalParameter
value: 1000.0

727241
type: LocalParameter
value: -1000.0

099035
type: SpeciesReference
stoichiometry: 1.0
species: 719883

099023
type: SpeciesReference
stoichiometry: 1.0
species: 719879

720132
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phytofluene

724180
type: Reaction
product: 209897
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8283.t1 SUBSYSTEM: Retinol metabolism
reactant: 209873
product: 209922
product: 209910
reactant: 209885
reversible: false
name: all-trans-retinyl ester isomerohydrolase (acetate-utilizing)
kinetic law: 209934
fast: false

209897
type: SpeciesReference
stoichiometry: 1.0
species: 718197

718197
type: Species
notes: FORMULA: C2H3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Acetate

209873
type: SpeciesReference
stoichiometry: 1.0
species: 719436

719436
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: H2O

209922
type: SpeciesReference
stoichiometry: 1.0
species: 720279

720279
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: 11-cis-Retinol

209910
type: SpeciesReference
stoichiometry: 1.0
species: 719408

719408
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: H+

209885
type: SpeciesReference
stoichiometry: 1.0
species: 720272

720272
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: all-trans-Retinyl acetate

737058
type: LocalParameter
value: 0.0

737056
type: LocalParameter
value: 0.0

737054
type: LocalParameter
value: 1000.0

737053
type: LocalParameter
value: 0.0

722434
type: Reaction
product: 128227
fast: false
reversible: false
product: 128215
name: Dihydroneopterin triphosphate pyrophosphatase
kinetic law: 128239
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10835.t1 SUBSYSTEM: Folate biosynthesis
reactant: 128203
reactant: 128191

128227
type: SpeciesReference
stoichiometry: 1.0
species: 720179

128215
type: SpeciesReference
stoichiometry: 1.0
species: 718921

718921
type: Species
notes: FORMULA: C9H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dihydroneopterin phosphate

729805
type: LocalParameter
value: 0.0

729803
type: LocalParameter
value: 0.0

729802
type: LocalParameter
value: 1000.0

729801
type: LocalParameter
value: 0.0

128203
type: SpeciesReference
stoichiometry: 1.0
species: 719424

128191
type: SpeciesReference
stoichiometry: 1.0
species: 718319

718319
type: Species
notes: FORMULA: C9H11N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072

720308
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: S-Succinyldihydrolipoamide

722316
type: Reaction
reactant: 122755
kinetic law: 122804
notes: GENE_ASSOCIATION: CRv4_Au5.s17.g7516.t1 SUBSYSTEM: Fatty acid elongation in mitochondria
product: 122779
name: acetyl-CoA C-acyltransferase (C8:0)
reactant: 122767
product: 122791
reversible: false
fast: false

122755
type: SpeciesReference
stoichiometry: 1.0
species: 718229

729375
type: LocalParameter
value: 0.0

729374
type: LocalParameter
value: 0.0

729372
type: LocalParameter
value: 1000.0

729371
type: LocalParameter
value: 0.0

122779
type: SpeciesReference
stoichiometry: 1.0
species: 717858

717858
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Oxooctanoyl-CoA

122767
type: SpeciesReference
stoichiometry: 1.0
species: 719544

719544
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Hexanoyl-CoA (n-C6:0CoA)

122791
type: SpeciesReference
stoichiometry: 1.0
species: 718669

721619
type: Reaction
kinetic law: 101444
product: 101432
reactant: 101420
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, nucleus
fast: false
reversible: true
name: udp intracellular transport, nucleus

727485
type: LocalParameter
value: 0.0

727484
type: LocalParameter
value: 0.0

727482
type: LocalParameter
value: 1000.0

727481
type: LocalParameter
value: -1000.0

101432
type: SpeciesReference
stoichiometry: 1.0
species: 720590

720590
type: Species
notes: FORMULA: C9H11N2O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: UDP

101420
type: SpeciesReference
stoichiometry: 1.0
species: 720584

723609
type: Reaction
reversible: false
reactant: 175654
product: 175702
fast: false
name: S-adenosylmethioninamine:putrescine 3-aminopropyltransferase
kinetic law: 175714
product: 175678
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g4232.t1 SUBSYSTEM: Methionine metabolism;Urea cycle and metabolism of amino groups
product: 175690
reactant: 175666

175654
type: SpeciesReference
stoichiometry: 1.0
species: 718381

718381
type: Species
notes: FORMULA: C14H24N6O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: S-Adenosylmethioninamine

175702
type: SpeciesReference
stoichiometry: 1.0
species: 720357

733912
type: LocalParameter
value: 0.0

733909
type: LocalParameter
value: 0.0

733908
type: LocalParameter
value: 1000.0

733907
type: LocalParameter
value: 0.0

175678
type: SpeciesReference
stoichiometry: 1.0
species: 718125

718125
type: Species
notes: FORMULA: C11H15N5O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5-Methylthioadenosine

175690
type: SpeciesReference
stoichiometry: 1.0
species: 719394

175666
type: SpeciesReference
stoichiometry: 1.0
species: 720234

720234
type: Species
notes: FORMULA: C4H14N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Putrescine

717663
type: Species
notes: FORMULA: C7H8O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-Carboxy-4-methyl-2-oxopentanoate

718909
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Dihydrolipoamide

722398
type: Reaction
fast: false
product: 126454
reactant: 126406
product: 126430
name: fatty acid omega-hydroxylase (16:0)
reactant: 126418
kinetic law: 126466
reversible: false
reactant: 126394
product: 126442
notes: GENE_ASSOCIATION: (CRv4_Au5.s3.g10234.t1 and CRv4_Au5.s3.g11329.t1) SUBSYSTEM: Fatty acid metabolism

126454
type: SpeciesReference
stoichiometry: 1.0
species: 720648

720648
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: omega hydroxy hexadecanoate (n-C16:0)

126406
type: SpeciesReference
stoichiometry: 1.0
species: 719472

126430
type: SpeciesReference
stoichiometry: 1.0
species: 718715

718715
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Oxidized flavoprotein (cytochrome P-450)

126418
type: SpeciesReference
stoichiometry: 1.0
species: 719882

729677
type: LocalParameter
value: 0.0

729675
type: LocalParameter
value: 0.0

729674
type: LocalParameter
value: 1000.0

729672
type: LocalParameter
value: 0.0

126394
type: SpeciesReference
stoichiometry: 1.0
species: 718719

718719
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Reduced flavoprotein (cytochrome P-450)

126442
type: SpeciesReference
stoichiometry: 1.0
species: 719430

719272
type: Species
notes: FORMULA: C5H10N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: L-Glutamine

721920
type: Reaction
reactant: 110642
reversible: false
name: palmitoyl-CoA hydrolase (16:0)
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1713.t1 SUBSYSTEM: Biosynthesis of unsaturated fatty acids
reactant: 110654
product: 110679
product: 110691
product: 110666
fast: false
kinetic law: 110703

110642
type: SpeciesReference
stoichiometry: 1.0
species: 719424

110654
type: SpeciesReference
stoichiometry: 1.0
species: 720147

720147
type: Species
notes: FORMULA: C37H62N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Palmitoyl-CoA (n-C16:0CoA)

110679
type: SpeciesReference
stoichiometry: 1.0
species: 719394

110691
type: SpeciesReference
stoichiometry: 1.0
species: 719470

110666
type: SpeciesReference
stoichiometry: 1.0
species: 718665

728333
type: LocalParameter
value: 0.0

728330
type: LocalParameter
value: 0.0

728327
type: LocalParameter
value: 1000.0

728326
type: LocalParameter
value: 0.0

721881
type: Reaction
product: 109847
reactant: 109787
reactant: 109811
reactant: 109799
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10656.t1 SUBSYSTEM: Biosynthesis of steroids
product: 109823
fast: false
product: 109835
kinetic law: 109859
name: squalene synthase

109847
type: SpeciesReference
stoichiometry: 1.0
species: 720374

720374
type: Species
notes: FORMULA: C30H50
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Squalene

109787
type: SpeciesReference
stoichiometry: 1.0
species: 719394

109811
type: SpeciesReference
stoichiometry: 1.0
species: 720233

720233
type: Species
notes: FORMULA: C30H49O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Presqualene diphosphate

109799
type: SpeciesReference
stoichiometry: 1.0
species: 719832

109823
type: SpeciesReference
stoichiometry: 1.0
species: 719820

109835
type: SpeciesReference
stoichiometry: 1.0
species: 720179

728215
type: LocalParameter
value: 0.0

728212
type: LocalParameter
value: 0.0

728209
type: LocalParameter
value: 1000.0

728206
type: LocalParameter
value: 0.0

723707
type: Reaction
name: UDP-arabinose:O-glycan 1,2-beta-L-arabinosyltransferase (4hproaraaraara)
reactant: 181113
reversible: false
notes: GENE_ASSOCIATION: SUBSYSTEM: O-Glycan biosynthesis
product: 181149
fast: false
kinetic law: 181162
product: 181137
reactant: 181125

181113
type: SpeciesReference
stoichiometry: 1.0
species: 717963

717963
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara(2-b1)Ara

717076
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Golgi Apparatus

181149
type: SpeciesReference
stoichiometry: 1.0
species: 720585

720585
type: Species
notes: FORMULA: C9H11N2O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: UDP

734308
type: LocalParameter
value: 0.0

734306
type: LocalParameter
value: 0.0

734305
type: LocalParameter
value: 1000.0

734304
type: LocalParameter
value: 0.0

181137
type: SpeciesReference
stoichiometry: 1.0
species: 717966

717966
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara(2-b1)Ara(2-b1)Ara

181125
type: SpeciesReference
stoichiometry: 1.0
species: 720593

720593
type: Species
notes: FORMULA: C14H20N2O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: UDP-L-arabinose

721806
type: Reaction
reactant: 107605
fast: false
product: 107617
product: 107629
reversible: true
name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
kinetic law: 107641
reactant: 107593
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g2318.t1 SUBSYSTEM: Biosynthesis of steroids

107605
type: SpeciesReference
stoichiometry: 1.0
species: 718689

718689
type: Species
notes: FORMULA: C9H12N3O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: CTP

107617
type: SpeciesReference
stoichiometry: 1.0
species: 717951

717951
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol

107629
type: SpeciesReference
stoichiometry: 1.0
species: 720180

720180
type: Species
notes: FORMULA: P2HO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Diphosphate

727954
type: LocalParameter
value: 0.0

727953
type: LocalParameter
value: 0.0

727951
type: LocalParameter
value: 1000.0

727950
type: LocalParameter
value: -1000.0

107593
type: SpeciesReference
stoichiometry: 1.0
species: 717253

717253
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 2-C-Methyl-D-erythritol 4-phosphate

723683
type: Reaction
name: Ammonia:ferredoxin oxidoreductase
fast: false
reactant: 179497
kinetic law: 179569
product: 179557
product: 179533
reversible: false
notes: GENE_ASSOCIATION: ((CRv4_Au5.s9.g15689.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s9.g15689.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s9.g15689.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s9.g15689.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s9.g15689.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Nitrogen metabolism
product: 179545
product: 179521
reactant: 179509

179497
type: SpeciesReference
stoichiometry: 6.0
species: 719107

734188
type: LocalParameter
value: 0.0

734186
type: LocalParameter
value: 0.0

734185
type: LocalParameter
value: 1000.0

734184
type: LocalParameter
value: 0.0

179557
type: SpeciesReference
stoichiometry: 1.0
species: 719850

719850
type: Species
notes: FORMULA: NH4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Ammonium

179533
type: SpeciesReference
stoichiometry: 4.0
species: 719402

179545
type: SpeciesReference
stoichiometry: 2.0
species: 719430

179521
type: SpeciesReference
stoichiometry: 6.0
species: 719099

179509
type: SpeciesReference
stoichiometry: 1.0
species: 719870

719870
type: Species
notes: FORMULA: NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Nitrite

718209
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Acetyl-ACP

722911
type: Reaction
name: phospholipid: diacylglycerol acyltransferase (18:1(9Z))
product: 151567
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reactant: 151543
kinetic law: 151579
reactant: 151531
reversible: false
product: 151555

151567
type: SpeciesReference
stoichiometry: 1.0
species: 720416

720416
type: Species
notes: FORMULA: C55H102O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (16:0/18:1(9Z)/18:1(9Z))

151543
type: SpeciesReference
stoichiometry: 1.0
species: 719961

719961
type: Species
notes: FORMULA: C39H71O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(11Z)-octadecenoyl,2-(9Z)-octadecenoyl-sn-glycerol 3-phosphate

731423
type: LocalParameter
value: 0.0

731421
type: LocalParameter
value: 0.0

731419
type: LocalParameter
value: 1000.0

731417
type: LocalParameter
value: 0.0

151531
type: SpeciesReference
stoichiometry: 1.0
species: 717097

717097
type: Species
notes: FORMULA: C37H70O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1-hexadecanoyl,2-(9Z)-octadecenoyl, 16:0/18:1(9Z))

151555
type: SpeciesReference
stoichiometry: 1.0
species: 717167

718763
type: Species
notes: FORMULA: C9H12N3O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dCMP

718455
type: Species
notes: FORMULA: C39H63N5O28R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Asn(-b1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man](3-a1)Man

719609
type: Species
notes: FORMULA: C6H13NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Leucine

723496
type: Reaction
kinetic law: 171196
product: 171184
reactant: 171171
reactant: 171159
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4599.t1 SUBSYSTEM: Histidine metabolism
fast: false
reversible: false
name: phosphoribosyl-AMP cyclohydrolase, cytosol

733483
type: LocalParameter
value: 0.0

733480
type: LocalParameter
value: 0.0

733479
type: LocalParameter
value: 1000.0

733476
type: LocalParameter
value: 0.0

171184
type: SpeciesReference
stoichiometry: 1.0
species: 720209

720209
type: Species
notes: FORMULA: C15H21N5O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072

171171
type: SpeciesReference
stoichiometry: 1.0
species: 720203

720203
type: Species
notes: FORMULA: C15H19N5O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(5-Phosphoribosyl)-AMP

171159
type: SpeciesReference
stoichiometry: 1.0
species: 719424

717221
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: L-2-Amino-3-oxobutanoic acid

723870
type: Reaction
kinetic law: 192439
product: 192427
product: 192415
reactant: 192403
notes: GENE_ASSOCIATION: CRv4_Au5.s9.g15658.t1 SUBSYSTEM: Porphyrin and chlorophyll metabolism
fast: false
reversible: false
name: uroporphyrinogen III synthase

735172
type: LocalParameter
value: 0.0

735171
type: LocalParameter
value: 0.0

735169
type: LocalParameter
value: 1000.0

735168
type: LocalParameter
value: 0.0

192427
type: SpeciesReference
stoichiometry: 1.0
species: 720617

720617
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Uroporphyrinogen III

192415
type: SpeciesReference
stoichiometry: 1.0
species: 719430

192403
type: SpeciesReference
stoichiometry: 1.0
species: 719514

719514
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Hydroxymethylbilane

721071
type: Reaction
kinetic law: 087389
product: 087377
reactant: 087365
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: propanoate transport, chloroplast

726018
type: LocalParameter
value: 0.0

726017
type: LocalParameter
value: 0.0

726014
type: LocalParameter
value: 1000.0

726013
type: LocalParameter
value: -1000.0

087377
type: SpeciesReference
stoichiometry: 1.0
species: 720159

087365
type: SpeciesReference
stoichiometry: 1.0
species: 720158

719332
type: Species
notes: FORMULA: C3H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Glycerol 3-phosphate

723736
type: Reaction
kinetic law: 183237
product: 183212
notes: GENE_ASSOCIATION: (CRv4_Au5.s33.g11431.t1 or CRv4_Au5.s5.g11988.t1 or (CRv4_Au5.s12.g2920.t1 and CRv4_Au5.s2.g9603.t1 and CRv4_Au5.s22.g9803.t1 and CRv4_Au5.s6.g12740.t1 and CRv4_Au5.s8.g15041.t1 and CRv4_Au5.s10.g647.t1 and CRv4_Au5.s10.g104.t1 and CRv4_Au5.s12.g3008.t1 and CRv4_Au5.s7.g13986.t1 and CRv4_Au5.s7.g14116.t1 and CRv4_Au5.s10.g337.t1 and CRv4_Au5.s13.g4441.t1 and CRv4_Au5.s12.g4170.t1 and CRv4_Au5.s16.g6352.t1 and CRv4_Au5.s13.g5015.t1 and CRv4_Au5.s12.g3782.t1 and CRv4_Au5.s1.g2188.t1 and CRv4_Au5.s12.g3297.t1 and (CRv4_Au5.s6.g13274.t1 or CRv4_Au5.s9.g15788.t1))) SUBSYSTEM: Oxidative phosphorylation
product: 183225
reactant: 183200
reactant: 183176
fast: false
reactant: 183188
name: NADH:ubiquinone oxidoreductase Complex I
reversible: false

734477
type: LocalParameter
value: 0.0

734476
type: LocalParameter
value: 0.0

734474
type: LocalParameter
value: 1000.0

734473
type: LocalParameter
value: 0.0

183212
type: SpeciesReference
stoichiometry: 1.0
species: 719805

183225
type: SpeciesReference
stoichiometry: 1.0
species: 720258

720258
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Ubiquinol

183200
type: SpeciesReference
stoichiometry: 1.0
species: 720257

720257
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Ubiquinone

183176
type: SpeciesReference
stoichiometry: 1.0
species: 719404

183188
type: SpeciesReference
stoichiometry: 1.0
species: 719816

723420
type: Reaction
kinetic law: 168491
product: 168478
product: 168465
reactant: 168452
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10466.t1 SUBSYSTEM: Glycolysis / Gluconeogenesis;Pyruvate metabolism
fast: false
reversible: false
name: Pyruvate decarboxylase

733228
type: LocalParameter
value: 0.0

733226
type: LocalParameter
value: 0.0

733225
type: LocalParameter
value: 1000.0

733222
type: LocalParameter
value: 0.0

168478
type: SpeciesReference
stoichiometry: 1.0
species: 720495

720495
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Thiamine diphosphate

168465
type: SpeciesReference
stoichiometry: 1.0
species: 718217

718217
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Acetaldehyde

168452
type: SpeciesReference
stoichiometry: 1.0
species: 717215

717215
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 2-(alpha-Hydroxyethyl)thiamine diphosphate

721835
type: Reaction
reactant: 108576
product: 108588
reactant: 108564
fast: false
name: geranyl pyrophosphate synthase
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g2763.t1 SUBSYSTEM: Biosynthesis of steroids
product: 108600
kinetic law: 108612
reversible: false

108576
type: SpeciesReference
stoichiometry: 1.0
species: 719583

108588
type: SpeciesReference
stoichiometry: 1.0
species: 719360

719360
type: Species
notes: FORMULA: C10H17O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Geranyl diphosphate

108564
type: SpeciesReference
stoichiometry: 1.0
species: 718939

108600
type: SpeciesReference
stoichiometry: 1.0
species: 720179

728050
type: LocalParameter
value: 0.0

728049
type: LocalParameter
value: 0.0

728047
type: LocalParameter
value: 1000.0

728044
type: LocalParameter
value: 0.0

717846
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Oxohexadecanoyl-CoA

719380
type: Species
notes: FORMULA: C10H15N3O6S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Reduced glutathione

718407
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Apocytochrome c

719111
type: Species
notes: FORMULA: Fe8S8XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Reduced ferredoxin

722226
type: Reaction
kinetic law: 118596
product: 118584
product: 118572
reactant: 118560
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g11300.t1)) SUBSYSTEM: Fatty acid biosynthesis
fast: false
reversible: true
name: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)

729042
type: LocalParameter
value: 0.0

729040
type: LocalParameter
value: 0.0

729038
type: LocalParameter
value: 1000.0

729037
type: LocalParameter
value: -1000.0

118584
type: SpeciesReference
stoichiometry: 1.0
species: 720473

720473
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: trans-Dec-2-enoyl-[acyl-carrier protein]

118572
type: SpeciesReference
stoichiometry: 1.0
species: 719430

118560
type: SpeciesReference
stoichiometry: 1.0
species: 717708

717708
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-Hydroxydecanoyl-[acyl-carrier protein]

722430
type: Reaction
kinetic law: 128057
product: 128045
product: 128033
reactant: 128021
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8749.t1 SUBSYSTEM: Folate biosynthesis
fast: false
reversible: true
name: 2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine glycolaldehyde-lyase

729790
type: LocalParameter
value: 0.0

729788
type: LocalParameter
value: 0.0

729787
type: LocalParameter
value: 1000.0

729785
type: LocalParameter
value: -1000.0

128045
type: SpeciesReference
stoichiometry: 1.0
species: 719232

128033
type: SpeciesReference
stoichiometry: 1.0
species: 717219

128021
type: SpeciesReference
stoichiometry: 1.0
species: 718915

718915
type: Species
notes: FORMULA: C9H13N5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine

723006
type: Reaction
reactant: 154386
notes: GENE_ASSOCIATION: SUBSYSTEM: Glycerolipid metabolism
reactant: 154374
product: 154410
fast: false
product: 154398
kinetic law: 154422
reversible: false
name: sulfolipid 2'-O-acyltransferase (2'-18:3(5,9,12,15)/18:1(11Z)/16:0)

154386
type: SpeciesReference
stoichiometry: 1.0
species: 720365

720365
type: Species
notes: FORMULA: C43H79O12S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sulfoquinovosyldiacylglycerol (1-(11Z)-octadecenoyl,2-hexadecanoyl, 18:1(11Z)/16:0)

154374
type: SpeciesReference
stoichiometry: 1.0
species: 718555

718555
type: Species
notes: FORMULA: C39H58N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: coniferonyl-coa

154410
type: SpeciesReference
stoichiometry: 1.0
species: 718665

154398
type: SpeciesReference
stoichiometry: 1.0
species: 718481

718481
type: Species
notes: FORMULA: C61H105O13S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2'-O-all-cis-5,9,12,15-octadecatetraenoyl-sulfoquinovosyldiacylglycerol (2'-18:4(5,9,12,15)/18:1(11Z)/16:0)

731754
type: LocalParameter
value: 0.0

731752
type: LocalParameter
value: 0.0

731750
type: LocalParameter
value: 1000.0

731747
type: LocalParameter
value: 0.0

719300
type: Species
notes: FORMULA: C5H8NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Glutamate

718871
type: Species
notes: FORMULA: C46H85NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:1(9Z)/18:1(9Z))

721779
type: Reaction
kinetic law: 106697
product: 106685
reactant: 106673
reactant: 106661
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8740.t1 SUBSYSTEM: beta-Alanine metabolism;Pyrimidine metabolism
fast: false
reversible: true
name: dihydropyrimidinase

727886
type: LocalParameter
value: 0.0

727885
type: LocalParameter
value: 0.0

727884
type: LocalParameter
value: 1000.0

727882
type: LocalParameter
value: -1000.0

106685
type: SpeciesReference
stoichiometry: 1.0
species: 718557

718557
type: Species
notes: FORMULA: C4H8N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N-Carbamoyl-beta-alanine

106673
type: SpeciesReference
stoichiometry: 1.0
species: 719424

106661
type: SpeciesReference
stoichiometry: 1.0
species: 718074

718074
type: Species
notes: FORMULA: C4H6N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5,6-dihydrouracil

720660
type: Species
notes: FORMULA: C10H12N4O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Xanthosine

724191
type: Reaction
kinetic law: 210452
product: 210428
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1886.t1 or CRv4_Au5.s12.g4218.t1 or CRv4_Au5.s3.g11242.t1) SUBSYSTEM: Retinol metabolism
reactant: 210416
name: palmitoyl-CoA:retinol O-acyltransferase (trans-retinol)
reactant: 210404
fast: false
product: 210440
reversible: false

737102
type: LocalParameter
value: 0.0

737101
type: LocalParameter
value: 0.0

737099
type: LocalParameter
value: 1000.0

737098
type: LocalParameter
value: 0.0

210428
type: SpeciesReference
stoichiometry: 1.0
species: 718671

718671
type: Species
notes: FORMULA: C21H32N7O16P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Coenzyme A

210416
type: SpeciesReference
stoichiometry: 1.0
species: 720278

210404
type: SpeciesReference
stoichiometry: 1.0
species: 720152

720152
type: Species
notes: FORMULA: C37H62N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Palmitoyl-CoA (n-C16:0CoA)

210440
type: SpeciesReference
stoichiometry: 1.0
species: 720281

720281
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: all-trans-Retinyl palmitate

720897
type: Reaction
kinetic law: 083209
product: 083197
reactant: 083185
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: 4-aminobutanoate transport via diffusion, chloroplast

725338
type: LocalParameter
value: 0.0

725335
type: LocalParameter
value: 0.0

725332
type: LocalParameter
value: 1000.0

725331
type: LocalParameter
value: -1000.0

083197
type: SpeciesReference
stoichiometry: 1.0
species: 717933

717933
type: Species
notes: FORMULA: C4H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 4-Aminobutanoate

083185
type: SpeciesReference
stoichiometry: 1.0
species: 717930

717930
type: Species
notes: FORMULA: C4H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 4-Aminobutanoate

722271
type: Reaction
notes: GENE_ASSOCIATION: ((CRv4_Au5.s8.g14652.t1 and CRv4_Au5.s1.g1722.t1) or (CRv4_Au5.s8.g14652.t1 and CRv4_Au5.s17.g7349.t1)) SUBSYSTEM: Fatty acid biosynthesis
product: 120657
reactant: 120579
reactant: 120605
name: biotin carboxylase
product: 120618
fast: false
product: 120631
reversible: false
product: 120644
reactant: 120592
kinetic law: 120670

120657
type: SpeciesReference
stoichiometry: 1.0
species: 720141

120579
type: SpeciesReference
stoichiometry: 1.0
species: 718501

120605
type: SpeciesReference
stoichiometry: 1.0
species: 719460

120618
type: SpeciesReference
stoichiometry: 1.0
species: 718291

120631
type: SpeciesReference
stoichiometry: 1.0
species: 718585

718585
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Carboxybiotin-carboxyl-carrier protein

120644
type: SpeciesReference
stoichiometry: 1.0
species: 719402

120592
type: SpeciesReference
stoichiometry: 1.0
species: 718543

718543
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Holo-[carboxylase]

729210
type: LocalParameter
value: 0.0

729209
type: LocalParameter
value: 0.0

729207
type: LocalParameter
value: 1000.0

729206
type: LocalParameter
value: 0.0

722085
type: Reaction
kinetic law: 114585
product: 114573
reactant: 114561
notes: GENE_ASSOCIATION: SUBSYSTEM: Carotenoid biosynthesis
fast: false
reversible: true
name: neoxanthin synthase

728712
type: LocalParameter
value: 0.0

728710
type: LocalParameter
value: 0.0

728708
type: LocalParameter
value: 1000.0

728707
type: LocalParameter
value: -1000.0

114573
type: SpeciesReference
stoichiometry: 1.0
species: 719846

719846
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Neoxanthin

114561
type: SpeciesReference
stoichiometry: 1.0
species: 720644

720644
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Violaxanthin

723262
type: Reaction
product: 163585
reactant: 163561
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4899.t1 SUBSYSTEM: Glycerophospholipid metabolism
reversible: false
fast: false
product: 163597
product: 163573
kinetic law: 163609
reactant: 163549
name: phospholipase D (18:1(9Z)/18:4(5Z,9Z,12Z,15Z))

163585
type: SpeciesReference
stoichiometry: 1.0
species: 719394

163561
type: SpeciesReference
stoichiometry: 1.0
species: 720057

163597
type: SpeciesReference
stoichiometry: 1.0
species: 719988

719988
type: Species
notes: FORMULA: C39H65O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(9Z)-octadecenoyl,2-(5Z,9Z,12Z,15Z)-octadecatetraenoyl-sn-glycerol 3-phosphate

163573
type: SpeciesReference
stoichiometry: 1.0
species: 719047

719047
type: Species
notes: FORMULA: C2H8NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Ethanolamine

732685
type: LocalParameter
value: 0.0

732682
type: LocalParameter
value: 0.0

732680
type: LocalParameter
value: 1000.0

732679
type: LocalParameter
value: 0.0

163549
type: SpeciesReference
stoichiometry: 1.0
species: 719424

720821
type: Reaction
reactant: 077030
reactant: 076810
reactant: 076896
reactant: 077576
reactant: 076481
reactant: 076432
reactant: 077140
reactant: 075971
reactant: 077005
reactant: 075923
reactant: 076786
reactant: 076493
reactant: 076653
reactant: 076444
reactant: 076129
reactant: 076261
reactant: 076921
reactant: 076798
reactant: 077224
reactant: 077783
reactant: 077551
reactant: 076334
reactant: 076273
reactant: 077017
reactant: 077430
reversible: false
reactant: 077711
reactant: 075839
reactant: 077479
reactant: 077116
reactant: 077613
reactant: 077795
reactant: 076177
reactant: 077128
reactant: 077320
reactant: 076823
reactant: 076468
product: 077844
reactant: 076056
reactant: 076189
reactant: 076702
reactant: 076153
reactant: 075790
reactant: 076835
reactant: 076590
reactant: 075875
reactant: 077527
reactant: 076068
reactant: 077454
reactant: 077674
reactant: 076714
reactant: 077272
reactant: 076505
reactant: 077417
reactant: 077637
reactant: 077091
reactant: 076738
reactant: 076370
reactant: 077649
reactant: 075802
reactant: 076553
reactant: 075947
product: 077856
reactant: 077308
reactant: 077369
reactant: 075899
reactant: 077466
reactant: 077686
reactant: 076774
reactant: 075959
reactant: 077248
reactant: 076981
reactant: 076382
reactant: 077345
reactant: 077808
reactant: 077698
name: Biomass (autotrophic)
fast: false
reactant: 076297

077030
type: SpeciesReference
stoichiometry: 4.49362395400581E-4
species: 720074

720074
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phosphatidylglycerol (1-(11Z)-octadecenoyl,2-(3E)-hexadecenoyl, 18:1(11Z)/16:1(3E))

076810
type: SpeciesReference
stoichiometry: 4.04224143785702E-4
species: 719727

719727
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z,12Z)-octadecadienoyl,2-(7Z,10Z,13Z)-hexadecatrienoyl, 18:2(9Z,12Z)/16:3(7Z,10Z,13Z))

076896
type: SpeciesReference
stoichiometry: 5.54599913303149E-4
species: 719846

077576
type: SpeciesReference
stoichiometry: 0.00125050704853681
species: 720443

720443
type: Species
notes: FORMULA: C57H104O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (18:1(11Z)/18:1(9Z)/18:1(9Z))

076481
type: SpeciesReference
stoichiometry: 0.00161841949667812
species: 718885

718885
type: Species
notes: FORMULA: C46H79NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:2(9Z,12Z)/18:3(5Z,9Z,12Z))

076432
type: SpeciesReference
stoichiometry: 2.69736582779686E-4
species: 718877

077140
type: SpeciesReference
stoichiometry: 0.047239477777573
species: 720215

720215
type: Species
notes: FORMULA: C5H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Proline

075971
type: SpeciesReference
stoichiometry: 0.01008363478733
species: 718603

077005
type: SpeciesReference
stoichiometry: 1.96543511907943E-4
species: 720060

720060
type: Species
notes: FORMULA: C41H72NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:2(9Z,12Z)/18:3(5Z,9Z,12Z))

075923
type: SpeciesReference
stoichiometry: 0.00118722131603936
species: 718495

718495
type: Species
notes: FORMULA: C61H103O13S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2'-O-all-cis-5,9,12-octadecatrienoyl-sulfoquinovosyldiacylglycerol (2'-18:3(5,9,12)/18:3(9Z,12Z,15Z)/16:0)

076786
type: SpeciesReference
stoichiometry: 4.03142323204895E-4
species: 719724

719724
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z,12Z)-octadecadienoyl,2-(7Z,10Z)-hexadecadienoyl, 18:2(9Z,12Z)/16:2(7Z,10Z))

076493
type: SpeciesReference
stoichiometry: 7.51260097872796E-5
species: 718887

076653
type: SpeciesReference
stoichiometry: 0.00121126866096341
species: 719496

076444
type: SpeciesReference
stoichiometry: 7.45306399793478E-5
species: 718879

718879
type: Species
notes: FORMULA: C46H83NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:2(9Z,12Z)/18:1(11Z))

076129
type: SpeciesReference
stoichiometry: 3.00410486233575E-4
species: 718805

076261
type: SpeciesReference
stoichiometry: 7.69559931993822E-5
species: 718849

718849
type: Species
notes: FORMULA: C44H83NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (16:0/18:1(11Z))

076921
type: SpeciesReference
stoichiometry: 2.58386718354164E-4
species: 719996

719996
type: Species
notes: FORMULA: C43H81O13P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-Phosphatidyl-D-myo-inositol (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

076798
type: SpeciesReference
stoichiometry: 4.04224143785702E-4
species: 719726

719726
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z,12Z)-octadecadienoyl,2-(4Z,7Z,10Z)-hexadecatrienoyl, 18:2(9Z,12Z)/16:3(4Z,7Z,10Z))

077224
type: SpeciesReference
stoichiometry: 7.76961298962058E-4
species: 720372

720372
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Sulfoquinovosyldiacylglycerol (1-(9Z,12Z,15Z)-octadecatrienoyl,2-hexadecanoyl, 18:3(9Z,12Z,15Z)/16:0)

077783
type: SpeciesReference
stoichiometry: 0.00121126866096341
species: 720573

720573
type: Species
notes: FORMULA: C9H11NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Tyrosine

077551
type: SpeciesReference
stoichiometry: 0.00124766063160942
species: 720440

720440
type: Species
notes: FORMULA: C57H106O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (18:1(11Z)/18:1(9Z)/18:0)

076334
type: SpeciesReference
stoichiometry: 7.43345991157087E-5
species: 718861

718861
type: Species
notes: FORMULA: C46H85NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:1(11Z)/18:1(9Z))

076273
type: SpeciesReference
stoichiometry: 7.69559931993822E-5
species: 718851

718851
type: Species
notes: FORMULA: C44H83NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (16:0/18:1(9Z))

077017
type: SpeciesReference
stoichiometry: 6.11114335905723E-4
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720284
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718863
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initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Sulfoquinovosyldiacylglycerol (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

076529
type: SpeciesReference
stoichiometry: 0.00108182884876041
species: 718893

718893
type: Species
notes: FORMULA: C46H77NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: diacylglyceryl-N,N,N-trimethylhomoserine (18:3(9Z,12Z,15Z)/18:3(5Z,9Z,12Z))

077759
type: SpeciesReference
stoichiometry: 0.0823662689455118
species: 720497

720497
type: Species
notes: FORMULA: C4H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Threonine

076116
type: SpeciesReference
stoichiometry: 0.00333054322361735
species: 718803

718803
type: Species
notes: FORMULA:
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Digalactosyldiacylglycerol (1-(9Z,12Z)-octadecadienoyl,2-hexadecanoyl, 18:2(9Z,12Z)/16:0)

077296
type: SpeciesReference
stoichiometry: 0.00129445373984692
species: 720408

720408
type: Species
notes: FORMULA: C55H98O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Triacylglycerol (16:0/18:1(11Z)/18:3(5Z,9Z,12Z))

077212
type: SpeciesReference
stoichiometry: 7.2660276220152E-4
species: 720371

720371
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Sulfoquinovosyldiacylglycerol (1-(9Z,12Z)-octadecadienoyl,2-hexadecanoyl, 18:2(9Z,12Z)/16:0)

721531
type: Reaction
product: 099275
name: mitochondrial basic amino acid transporter, orn for arg-L
reactant: 099239
reversible: true
kinetic law: 099287
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s20.g8200.t1 SUBSYSTEM: Transport, mitochondria
reactant: 099251
product: 099263

099275
type: SpeciesReference
stoichiometry: 1.0
species: 719934

719934
type: Species
notes: FORMULA: C5H13N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Ornithine

099239
type: SpeciesReference
stoichiometry: 1.0
species: 718431

718431
type: Species
notes: FORMULA: C6H15N4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Arginine

727265
type: LocalParameter
value: 0.0

727264
type: LocalParameter
value: 0.0

727262
type: LocalParameter
value: 1000.0

727261
type: LocalParameter
value: -1000.0

099251
type: SpeciesReference
stoichiometry: 1.0
species: 719930

719930
type: Species
notes: FORMULA: C5H13N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Ornithine

099263
type: SpeciesReference
stoichiometry: 1.0
species: 718427

720047
type: Species
notes: FORMULA: C41H72NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: phosphatidylethanolamine (18:1(11Z)/18:4(5Z,9Z,12Z,15Z))

722509
type: Reaction
reactant: 131349
fast: false
reactant: 131361
kinetic law: 131409
product: 131385
name: glutathione-disulfide reductase (NADP), chloroplast
reactant: 131373
product: 131397
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g9452.t1 or CRv4_Au5.s6.g12638.t1) SUBSYSTEM: Glutamate metabolism

131349
type: SpeciesReference
stoichiometry: 1.0
species: 719368

719368
type: Species
notes: FORMULA: C20H28N6O12S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Oxidized glutathione

131361
type: SpeciesReference
stoichiometry: 1.0
species: 719402

730055
type: LocalParameter
value: 0.0

730053
type: LocalParameter
value: 0.0

730052
type: LocalParameter
value: 1000.0

730051
type: LocalParameter
value: 0.0

131385
type: SpeciesReference
stoichiometry: 2.0
species: 719376

719376
type: Species
notes: FORMULA: C10H15N3O6S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Reduced glutathione

131373
type: SpeciesReference
stoichiometry: 1.0
species: 719835

131397
type: SpeciesReference
stoichiometry: 1.0
species: 719823

719859
type: Species
notes: FORMULA: C11H12NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Nicotinate D-ribonucleotide

721563
type: Reaction
fast: false
reactant: 100021
product: 100045
kinetic law: 100057
reactant: 100009
name: Sulfate:Na+ symporter, mitochondrial
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g542.t1 or CRv4_Au5.s10.g542.t2 or CRv4_Au5.s12.g3125.t1) SUBSYSTEM: Transport, mitochondria
product: 100033
reversible: true

100021
type: SpeciesReference
stoichiometry: 1.0
species: 720345

720345
type: Species
notes: FORMULA: SO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sulfate

100045
type: SpeciesReference
stoichiometry: 1.0
species: 720348

720348
type: Species
notes: FORMULA: SO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Sulfate

727345
type: LocalParameter
value: 0.0

727344
type: LocalParameter
value: 0.0

727342
type: LocalParameter
value: 1000.0

727341
type: LocalParameter
value: -1000.0

100009
type: SpeciesReference
stoichiometry: 1.0
species: 719792

719792
type: Species
notes: FORMULA: Na
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sodium

100033
type: SpeciesReference
stoichiometry: 1.0
species: 719796

719796
type: Species
notes: FORMULA: Na
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Sodium

720221
type: Species
notes: FORMULA: C5H8NOR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Prolyl-tRNA(Pro)

717744
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-Hydroxy-3-methyl-2-oxopentanoate

721627
type: Reaction
reversible: false
kinetic law: 101649
notes: GENE_ASSOCIATION: CRv4_Au5.s4.g11849.t1 SUBSYSTEM: Transport, thylakoid lumen
reactant: 101565
reactant: 101589
reactant: 101577
name: chlorophyllide a transport via ABC system, thylakoid lumen
fast: false
product: 101637
product: 101625
product: 101601
product: 101613

727505
type: LocalParameter
value: 0.0

727504
type: LocalParameter
value: 0.0

727502
type: LocalParameter
value: 1000.0

727501
type: LocalParameter
value: 0.0

101565
type: SpeciesReference
stoichiometry: 1.0
species: 718501

101589
type: SpeciesReference
stoichiometry: 1.0
species: 719430

101577
type: SpeciesReference
stoichiometry: 1.0
species: 718611

101637
type: SpeciesReference
stoichiometry: 1.0
species: 720141

101625
type: SpeciesReference
stoichiometry: 1.0
species: 719402

101601
type: SpeciesReference
stoichiometry: 1.0
species: 718291

101613
type: SpeciesReference
stoichiometry: 1.0
species: 718609

718609
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Chlorophyllide a

722356
type: Reaction
fast: false
reversible: false
kinetic law: 124682
name: long-chain-fatty-acid-[acyl-carrier-protein] ligase (18:1(11Z))
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s6.g13391.t1) SUBSYSTEM: Fatty acid metabolism
reactant: 124621
reactant: 124597
product: 124657
product: 124645
product: 124633
product: 124670
reactant: 124609

729524
type: LocalParameter
value: 0.0

729522
type: LocalParameter
value: 0.0

729521
type: LocalParameter
value: 1000.0

729519
type: LocalParameter
value: 0.0

124621
type: SpeciesReference
stoichiometry: 1.0
species: 719919

124597
type: SpeciesReference
stoichiometry: 1.0
species: 718257

124657
type: SpeciesReference
stoichiometry: 1.0
species: 719925

124645
type: SpeciesReference
stoichiometry: 1.0
species: 719402

124633
type: SpeciesReference
stoichiometry: 1.0
species: 718389

718389
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: AMP

124670
type: SpeciesReference
stoichiometry: 1.0
species: 720180

124609
type: SpeciesReference
stoichiometry: 1.0
species: 718501

720548
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: tRNA(Sec)

723291
type: Reaction
name: glycine---tRNA ligase, mitochondria
fast: false
reactant: 164609
notes: GENE_ASSOCIATION: CRv4_Au5.s5.g12019.t1 SUBSYSTEM: Glycine, serine and threonine metabolism
reversible: false
reactant: 164621
reactant: 164633
kinetic law: 164681
product: 164645
product: 164669
product: 164657

164609
type: SpeciesReference
stoichiometry: 1.0
species: 718503

164621
type: SpeciesReference
stoichiometry: 1.0
species: 719318

164633
type: SpeciesReference
stoichiometry: 1.0
species: 720536

720536
type: Species
notes: FORMULA: C10H17O10PR2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: tRNA(Gly)

732791
type: LocalParameter
value: 0.0

732788
type: LocalParameter
value: 0.0

732786
type: LocalParameter
value: 1000.0

732785
type: LocalParameter
value: 0.0

164645
type: SpeciesReference
stoichiometry: 1.0
species: 718391

164669
type: SpeciesReference
stoichiometry: 1.0
species: 720182

164657
type: SpeciesReference
stoichiometry: 1.0
species: 719352

719352
type: Species
notes: FORMULA: C2H4NOR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Glycyl-tRNA(Gly)

724308
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: TCA cycle;CO2 fixation
name: Isocitrate dehydrogenase (NADP+), reversible
product: 216581
product: 216593
reversible: true
kinetic law: 216605
reactant: 216545
product: 216569
reactant: 216557
fast: false

216581
type: SpeciesReference
stoichiometry: 1.0
species: 718659

216593
type: SpeciesReference
stoichiometry: 1.0
species: 719835

737589
type: LocalParameter
value: 0.0

737588
type: LocalParameter
value: 0.0

737586
type: LocalParameter
value: 1000.0

737585
type: LocalParameter
value: -1000.0

216545
type: SpeciesReference
stoichiometry: 1.0
species: 719553

719553
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Isocitrate

216569
type: SpeciesReference
stoichiometry: 1.0
species: 718331

216557
type: SpeciesReference
stoichiometry: 1.0
species: 719823

721989
type: Reaction
name: 3-Hydroxybutanoate:NAD+ oxidoreductase, glyoxysome
fast: false
reversible: true
product: 112281
kinetic law: 112305
reactant: 112245
reactant: 112257
product: 112269
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g14479.t1 SUBSYSTEM: Butanoate metabolism
product: 112293

112281
type: SpeciesReference
stoichiometry: 1.0
species: 719412

728519
type: LocalParameter
value: 0.0

728516
type: LocalParameter
value: 0.0

728513
type: LocalParameter
value: 1000.0

728512
type: LocalParameter
value: -1000.0

112245
type: SpeciesReference
stoichiometry: 1.0
species: 718525

718525
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: (R)-3-Hydroxybutanoate

112257
type: SpeciesReference
stoichiometry: 1.0
species: 719810

719810
type: Species
notes: FORMULA: C21H26N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Nicotinamide adenine dinucleotide

112269
type: SpeciesReference
stoichiometry: 1.0
species: 718206

718206
type: Species
notes: FORMULA: C4H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Acetoacetate

112293
type: SpeciesReference
stoichiometry: 1.0
species: 719819

722538
type: Reaction
reversible: false
fast: false
name: glutathione:hydrogen-peroxide oxidoreductase
product: 133040
kinetic law: 133064
reactant: 133016
product: 133052
reactant: 133028
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g11094.t1 SUBSYSTEM: Glutathione metabolism

133040
type: SpeciesReference
stoichiometry: 1.0
species: 719366

719366
type: Species
notes: FORMULA: C20H28N6O12S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Oxidized glutathione

730150
type: LocalParameter
value: 0.0

730148
type: LocalParameter
value: 0.0

730147
type: LocalParameter
value: 1000.0

730146
type: LocalParameter
value: 0.0

133016
type: SpeciesReference
stoichiometry: 2.0
species: 719374

719374
type: Species
notes: FORMULA: C10H15N3O6S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Reduced glutathione

133052
type: SpeciesReference
stoichiometry: 2.0
species: 719424

133028
type: SpeciesReference
stoichiometry: 1.0
species: 719442

723715
type: Reaction
reactant: 181668
reactant: 181656
reactant: 181680
fast: false
reversible: false
kinetic law: 181716
product: 181692
name: Dihydrofolate reductase (NADP+)
product: 181704
notes: GENE_ASSOCIATION: CRv4_Au5.s17.g7362.t1 SUBSYSTEM: One carbon pool by folate

181668
type: SpeciesReference
stoichiometry: 1.0
species: 719394

181656
type: SpeciesReference
stoichiometry: 1.0
species: 718907

718907
type: Species
notes: FORMULA: C19H19N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 7,8-Dihydrofolate

181680
type: SpeciesReference
stoichiometry: 1.0
species: 719832

734348
type: LocalParameter
value: 0.0

734346
type: LocalParameter
value: 0.0

734345
type: LocalParameter
value: 1000.0

734344
type: LocalParameter
value: 0.0

181692
type: SpeciesReference
stoichiometry: 1.0
species: 719820

181704
type: SpeciesReference
stoichiometry: 1.0
species: 720488

723002
type: Reaction
product: 154278
fast: false
kinetic law: 154302
product: 154290
name: phospholipid: diacylglycerol acyltransferase (18:1(9Z))
reactant: 154254
reversible: false
reactant: 154266
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism

154278
type: SpeciesReference
stoichiometry: 1.0
species: 717167

731739
type: LocalParameter
value: 0.0

731737
type: LocalParameter
value: 0.0

731735
type: LocalParameter
value: 1000.0

731733
type: LocalParameter
value: 0.0

154290
type: SpeciesReference
stoichiometry: 1.0
species: 720461

154254
type: SpeciesReference
stoichiometry: 1.0
species: 717121

154266
type: SpeciesReference
stoichiometry: 1.0
species: 719961

721814
type: Reaction
reactant: 107870
notes: GENE_ASSOCIATION: SUBSYSTEM: Biosynthesis of steroids
name: 7-dehydrodesmosterol desaturase
kinetic law: 107918
fast: false
product: 107894
reversible: true
product: 107906
reactant: 107882

107870
type: SpeciesReference
stoichiometry: 1.0
species: 718617

718617
type: Species
notes: FORMULA: C27H44O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5alpha-Cholesta-7,24-dien-3beta-ol

727975
type: LocalParameter
value: 0.0

727974
type: LocalParameter
value: 0.0

727972
type: LocalParameter
value: 1000.0

727971
type: LocalParameter
value: -1000.0

107894
type: SpeciesReference
stoichiometry: 1.0
species: 718785

107906
type: SpeciesReference
stoichiometry: 1.0
species: 719079

719079
type: Species
notes: FORMULA: C27H33N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Flavin adenine dinucleotide reduced

107882
type: SpeciesReference
stoichiometry: 1.0
species: 719071

719071
type: Species
notes: FORMULA: C27H31N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Flavin adenine dinucleotide oxidized

718709
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Cytochrome c

720155
type: Species
notes: FORMULA: C9H15NO5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (R)-Pantothenate

722951
type: Reaction
product: 152783
fast: false
reactant: 152759
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reversible: false
reactant: 152746
product: 152771
kinetic law: 152795
name: phospholipid: diacylglycerol acyltransferase (16:0)

152783
type: SpeciesReference
stoichiometry: 1.0
species: 720438

152759
type: SpeciesReference
stoichiometry: 1.0
species: 719957

719957
type: Species
notes: FORMULA: C37H69O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-(11Z)-octadecenoyl,2-hexadecanoyl-sn-glycerol 3-phosphate

152746
type: SpeciesReference
stoichiometry: 1.0
species: 717109

152771
type: SpeciesReference
stoichiometry: 1.0
species: 717167

731563
type: LocalParameter
value: 0.0

731561
type: LocalParameter
value: 0.0

731559
type: LocalParameter
value: 1000.0

731557
type: LocalParameter
value: 0.0

721840
type: Reaction
product: 108732
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g2885.t1 SUBSYSTEM: Biosynthesis of steroids
name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
reactant: 108708
reversible: true
fast: false
kinetic law: 108769
product: 108757
product: 108720
product: 108744
reactant: 108696

108732
type: SpeciesReference
stoichiometry: 1.0
species: 719422

719422
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate

108708
type: SpeciesReference
stoichiometry: 1.0
species: 720219

720219
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Protein dithiol

728066
type: LocalParameter
value: 0.0

728063
type: LocalParameter
value: 0.0

728060
type: LocalParameter
value: 1000.0

728057
type: LocalParameter
value: -1000.0

108757
type: SpeciesReference
stoichiometry: 1.0
species: 720218

720218
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Protein disulfide

108720
type: SpeciesReference
stoichiometry: 1.0
species: 719402

108744
type: SpeciesReference
stoichiometry: 1.0
species: 719430

108696
type: SpeciesReference
stoichiometry: 1.0
species: 717256

717256
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate

724021
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3964.t1 SUBSYSTEM: Purine metabolism
fast: false
reactant: 201591
kinetic law: 201664
reactant: 201615
reactant: 201603
reversible: false
product: 201652
name: xanthine dehydrogenase
product: 201627
product: 201639

201591
type: SpeciesReference
stoichiometry: 1.0
species: 719424

736074
type: LocalParameter
value: 0.0

736071
type: LocalParameter
value: 0.0

736068
type: LocalParameter
value: 1000.0

736065
type: LocalParameter
value: 0.0

201615
type: SpeciesReference
stoichiometry: 1.0
species: 719801

201603
type: SpeciesReference
stoichiometry: 1.0
species: 719541

719541
type: Species
notes: FORMULA: C5H4N4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Hypoxanthine

201652
type: SpeciesReference
stoichiometry: 1.0
species: 720654

720654
type: Species
notes: FORMULA: C5H4N4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Xanthine

201627
type: SpeciesReference
stoichiometry: 1.0
species: 719394

201639
type: SpeciesReference
stoichiometry: 1.0
species: 719811

723642
type: Reaction
name: glucan 1,3-alpha-glucosidase (asnglcnacglcnacman(man(manman)manman)manmanmanglc) (glc-B)
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10955.t1 SUBSYSTEM: N-Glycan biosynthesis
reactant: 177253
product: 177277
reactant: 177265
product: 177289
reversible: false
kinetic law: 177301
fast: false

177253
type: SpeciesReference
stoichiometry: 1.0
species: 718445

177277
type: SpeciesReference
stoichiometry: 1.0
species: 718443

718443
type: Species
notes: FORMULA: C81H133N5O63R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Asn(-b1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man(3-a1)Glc

177265
type: SpeciesReference
stoichiometry: 1.0
species: 719424

177289
type: SpeciesReference
stoichiometry: 1.0
species: 719262

719262
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: beta-D-glucose

734036
type: LocalParameter
value: 0.0

734033
type: LocalParameter
value: 0.0

734032
type: LocalParameter
value: 1000.0

734031
type: LocalParameter
value: 0.0

722833
type: Reaction
product: 148174
reactant: 148100
product: 148186
kinetic law: 148198
reversible: false
reactant: 148137
product: 148149
fast: false
product: 148162
reactant: 148113
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
name: omega-6 desaturase (18:2(9Z,12Z)/16:1(7Z)) (MGDG)
reactant: 148125

148174
type: SpeciesReference
stoichiometry: 1.0
species: 719721

148100
type: SpeciesReference
stoichiometry: 1.0
species: 719099

148186
type: SpeciesReference
stoichiometry: 4.0
species: 719823

731153
type: LocalParameter
value: 0.0

731152
type: LocalParameter
value: 0.0

731151
type: LocalParameter
value: 1000.0

731148
type: LocalParameter
value: 0.0

148137
type: SpeciesReference
stoichiometry: 1.0
species: 719882

148149
type: SpeciesReference
stoichiometry: 1.0
species: 719107

148162
type: SpeciesReference
stoichiometry: 2.0
species: 719430

148113
type: SpeciesReference
stoichiometry: 1.0
species: 719712

719712
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-(7Z)-hexadecenoyl, 18:1(9Z)/16:1(7Z))

148125
type: SpeciesReference
stoichiometry: 4.0
species: 719835

722719
type: Reaction
reactant: 141128
notes: GENE_ASSOCIATION: ((CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
name: omega-3 desaturase (18:1(9Z)/16:3(7Z,10Z,13Z)) (DGDG)
reversible: false
reactant: 141140
product: 141201
product: 141189
kinetic law: 141213
reactant: 141116
fast: false
product: 141165
reactant: 141153
product: 141177

141128
type: SpeciesReference
stoichiometry: 1.0
species: 719099

141140
type: SpeciesReference
stoichiometry: 4.0
species: 719835

141201
type: SpeciesReference
stoichiometry: 4.0
species: 719823

141189
type: SpeciesReference
stoichiometry: 2.0
species: 719430

730764
type: LocalParameter
value: 0.0

730763
type: LocalParameter
value: 0.0

730762
type: LocalParameter
value: 1000.0

730760
type: LocalParameter
value: 0.0

141116
type: SpeciesReference
stoichiometry: 1.0
species: 718797

141165
type: SpeciesReference
stoichiometry: 1.0
species: 718801

141153
type: SpeciesReference
stoichiometry: 1.0
species: 719882

141177
type: SpeciesReference
stoichiometry: 1.0
species: 719107

722251
type: Reaction
kinetic law: 119624
reactant: 119575
fast: false
product: 119612
product: 119599
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0)
reversible: true
reactant: 119562
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g10590.t1)) SUBSYSTEM: Fatty acid biosynthesis
reactant: 119587

729139
type: LocalParameter
value: 0.0

729137
type: LocalParameter
value: 0.0

729136
type: LocalParameter
value: 1000.0

729134
type: LocalParameter
value: -1000.0

119575
type: SpeciesReference
stoichiometry: 1.0
species: 719402

119612
type: SpeciesReference
stoichiometry: 1.0
species: 719823

119599
type: SpeciesReference
stoichiometry: 1.0
species: 717759

717759
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-Hydroxyoctanoyl-[acyl-carrier protein]

119562
type: SpeciesReference
stoichiometry: 1.0
species: 717864

717864
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Oxooctanoyl-[acyl-carrier protein]

119587
type: SpeciesReference
stoichiometry: 1.0
species: 719835

718621
type: Species
notes: FORMULA: C10H8O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: chorismate

720949
type: Reaction
fast: false
product: 084401
product: 084413
kinetic law: 084425
name: Fructose-6-phosphate transport via hexose-phosphate translocator, chloroplast
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
reactant: 084377
reversible: false
reactant: 084389

084401
type: SpeciesReference
stoichiometry: 1.0
species: 719067

084413
type: SpeciesReference
stoichiometry: 1.0
species: 720141

725546
type: LocalParameter
value: 0.0

725543
type: LocalParameter
value: 0.0

725540
type: LocalParameter
value: 1000.0

725539
type: LocalParameter
value: 0.0

084377
type: SpeciesReference
stoichiometry: 1.0
species: 719069

084389
type: SpeciesReference
stoichiometry: 1.0
species: 720137

721211
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3783.t1 or CRv4_Au5.s12.g3784.t1 or CRv4_Au5.s16.g6192.t1) SUBSYSTEM: Transport, extracellular
product: 091245
product: 091269
reactant: 091232
reactant: 091208
kinetic law: 091293
reactant: 091220
product: 091257
fast: false
reversible: false
product: 091281
name: Aminophospholipid translocase (pe1819Z1829Z12Z), extracellular

091245
type: SpeciesReference
stoichiometry: 1.0
species: 718287

091269
type: SpeciesReference
stoichiometry: 1.0
species: 720053

720053
type: Species
notes: FORMULA: C41H76NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: phosphatidylethanolamine (18:1(9Z)/18:2(9Z,12Z))

091232
type: SpeciesReference
stoichiometry: 1.0
species: 720051

720051
type: Species
notes: FORMULA: C41H76NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:1(9Z)/18:2(9Z,12Z))

091208
type: SpeciesReference
stoichiometry: 1.0
species: 718497

726450
type: LocalParameter
value: 0.0

726448
type: LocalParameter
value: 0.0

726447
type: LocalParameter
value: 1000.0

726445
type: LocalParameter
value: 0.0

091220
type: SpeciesReference
stoichiometry: 1.0
species: 719424

091257
type: SpeciesReference
stoichiometry: 1.0
species: 719394

091281
type: SpeciesReference
stoichiometry: 1.0
species: 720137

719936
type: Species
notes: FORMULA: C5H3N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Orotate

723744
type: Reaction
reversible: false
reactant: 183718
product: 183754
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4514.t1 or CRv4_Au5.s13.g4889.t1) SUBSYSTEM: Pantothenate and CoA biosynthesis
kinetic law: 183766
name: ATP:pantothenate 4'-phosphotransferase
product: 183742
fast: false
reactant: 183706
product: 183730

183718
type: SpeciesReference
stoichiometry: 1.0
species: 720155

183754
type: SpeciesReference
stoichiometry: 1.0
species: 719394

734517
type: LocalParameter
value: 0.0

734516
type: LocalParameter
value: 0.0

734514
type: LocalParameter
value: 1000.0

734513
type: LocalParameter
value: 0.0

183742
type: SpeciesReference
stoichiometry: 1.0
species: 718287

183706
type: SpeciesReference
stoichiometry: 1.0
species: 718497

183730
type: SpeciesReference
stoichiometry: 1.0
species: 718059

718059
type: Species
notes: FORMULA: C9H14NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-4'-Phosphopantothenate

723031
type: Reaction
product: 155361
reactant: 155349
product: 155385
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
kinetic law: 155397
reactant: 155337
fast: false
product: 155373
name: triacylglycerol acylhydrolase (16:0/18:1(11Z)/18:3(5Z,9Z,12Z))
reversible: false

155361
type: SpeciesReference
stoichiometry: 1.0
species: 717095

155349
type: SpeciesReference
stoichiometry: 1.0
species: 720408

155385
type: SpeciesReference
stoichiometry: 1.0
species: 719942

719942
type: Species
notes: FORMULA: C18H29O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: pinolenic acid (18:3(5Z,9Z,12Z))

731858
type: LocalParameter
value: 0.0

731856
type: LocalParameter
value: 0.0

731854
type: LocalParameter
value: 1000.0

731851
type: LocalParameter
value: 0.0

155337
type: SpeciesReference
stoichiometry: 1.0
species: 719424

155373
type: SpeciesReference
stoichiometry: 1.0
species: 719394

719372
type: Species
notes: FORMULA: C20H28N6O12S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Oxidized glutathione

721729
type: Reaction
product: 104879
product: 104891
name: L-Arginine,NADPH:oxygen oxidoreductase (N-(omega)-hydroxyarginine-forming)
notes: GENE_ASSOCIATION: CRv4_Au5.s9.g15482.t1 SUBSYSTEM: Arginine and proline metabolism
kinetic law: 104915
reactant: 104843
reactant: 104831
reactant: 104867
fast: false
reversible: false
reactant: 104855
product: 104903

104879
type: SpeciesReference
stoichiometry: 1.0
species: 719424

104891
type: SpeciesReference
stoichiometry: 1.0
species: 719820

727760
type: LocalParameter
value: 0.0

727759
type: LocalParameter
value: 0.0

727757
type: LocalParameter
value: 1000.0

727756
type: LocalParameter
value: 0.0

104843
type: SpeciesReference
stoichiometry: 1.0
species: 719394

104831
type: SpeciesReference
stoichiometry: 1.0
species: 718427

104867
type: SpeciesReference
stoichiometry: 1.0
species: 719879

104855
type: SpeciesReference
stoichiometry: 1.0
species: 719832

104903
type: SpeciesReference
stoichiometry: 1.0
species: 719877

719877
type: Species
notes: FORMULA: C6H15N4O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N-(omega)-Hydroxyarginine

721875
type: Reaction
kinetic law: 109679
product: 109667
product: 109655
reactant: 109643
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10656.t1 SUBSYSTEM: Biosynthesis of steroids
fast: false
reversible: false
name: presqualene-diphosphate synthase

728195
type: LocalParameter
value: 0.0

728192
type: LocalParameter
value: 0.0

728189
type: LocalParameter
value: 1000.0

728186
type: LocalParameter
value: 0.0

109667
type: SpeciesReference
stoichiometry: 1.0
species: 720233

109655
type: SpeciesReference
stoichiometry: 1.0
species: 720179

109643
type: SpeciesReference
stoichiometry: 2.0
species: 719168

719168
type: Species
notes: FORMULA: C15H25O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: trans,trans-Farnesyl diphosphate

722064
type: Reaction
reactant: 114184
reactant: 114196
kinetic law: 114256
product: 114232
reactant: 114172
reactant: 114208
name: cryptoxanthin hydroxylase
product: 114220
notes: GENE_ASSOCIATION: SUBSYSTEM: Carotenoid biosynthesis
reversible: false
fast: false
product: 114244

114184
type: SpeciesReference
stoichiometry: 1.0
species: 719410

114196
type: SpeciesReference
stoichiometry: 1.0
species: 719841

719841
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Nicotinamide adenine dinucleotide phosphate - reduced

728670
type: LocalParameter
value: 0.0

728668
type: LocalParameter
value: 0.0

728666
type: LocalParameter
value: 1000.0

728665
type: LocalParameter
value: 0.0

114232
type: SpeciesReference
stoichiometry: 1.0
species: 719645

114172
type: SpeciesReference
stoichiometry: 1.0
species: 718683

718683
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: alpha-Cryptoxanthin

114208
type: SpeciesReference
stoichiometry: 1.0
species: 719886

719886
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: O2

114220
type: SpeciesReference
stoichiometry: 1.0
species: 719438

719438
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: H2O

114244
type: SpeciesReference
stoichiometry: 1.0
species: 719829

719829
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Nicotinamide adenine dinucleotide phosphate

721293
type: Reaction
reactant: 093354
reversible: true
kinetic law: 093391
reactant: 093342
product: 093367
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10521.t1 SUBSYSTEM: Transport, glyoxysome
name: Asparagine/H+ symporter, glyoxysomal
product: 093379
fast: false

093354
type: SpeciesReference
stoichiometry: 1.0
species: 719394

726670
type: LocalParameter
value: 0.0

726669
type: LocalParameter
value: 0.0

726667
type: LocalParameter
value: 1000.0

726666
type: LocalParameter
value: -1000.0

093342
type: SpeciesReference
stoichiometry: 1.0
species: 718457

093367
type: SpeciesReference
stoichiometry: 1.0
species: 718461

718461
type: Species
notes: FORMULA: C4H8N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: L-Asparagine

093379
type: SpeciesReference
stoichiometry: 2.0
species: 719412

722748
type: Reaction
name: delta5 desaturase (18:2(9Z,12Z)/18:3(5Z,9Z,12Z))
reversible: false
kinetic law: 143178
product: 143166
product: 143142
reactant: 143117
reactant: 143105
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g712.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
fast: false
product: 143154
reactant: 143130

730859
type: LocalParameter
value: 0.0

730858
type: LocalParameter
value: 0.0

730857
type: LocalParameter
value: 1000.0

730855
type: LocalParameter
value: 0.0

143166
type: SpeciesReference
stoichiometry: 2.0
species: 719801

143142
type: SpeciesReference
stoichiometry: 1.0
species: 718885

143117
type: SpeciesReference
stoichiometry: 2.0
species: 719811

143105
type: SpeciesReference
stoichiometry: 1.0
species: 718883

143154
type: SpeciesReference
stoichiometry: 2.0
species: 719424

143130
type: SpeciesReference
stoichiometry: 1.0
species: 719879

719490
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Hexanoyl-ACP (n-C6:0ACP)

722470
type: Reaction
name: epimelibiose galactohydrolase
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Galactose metabolism
kinetic law: 129733
product: 129721
reactant: 129697
reversible: false
reactant: 129685
product: 129709
fast: false

729925
type: LocalParameter
value: 0.0

729923
type: LocalParameter
value: 0.0

729922
type: LocalParameter
value: 1000.0

729921
type: LocalParameter
value: 0.0

129721
type: SpeciesReference
stoichiometry: 1.0
species: 719672

719672
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: D-Mannose

129697
type: SpeciesReference
stoichiometry: 1.0
species: 719430

129685
type: SpeciesReference
stoichiometry: 1.0
species: 719041

719041
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Epimelibiose

129709
type: SpeciesReference
stoichiometry: 1.0
species: 719214

718517
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: beta-L-Arabinose 1-phosphate

722352
type: Reaction
reactant: 124308
kinetic law: 124392
name: long-chain-fatty-acid-[acyl-carrier-protein] ligase (14:0)
reactant: 124320
product: 124356
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s6.g13391.t1) SUBSYSTEM: Fatty acid metabolism
product: 124380
reversible: false
fast: false
product: 124368
reactant: 124332
product: 124344

124308
type: SpeciesReference
stoichiometry: 1.0
species: 718257

729507
type: LocalParameter
value: 0.0

729506
type: LocalParameter
value: 0.0

729504
type: LocalParameter
value: 1000.0

729503
type: LocalParameter
value: 0.0

124320
type: SpeciesReference
stoichiometry: 1.0
species: 718501

124356
type: SpeciesReference
stoichiometry: 1.0
species: 719402

124380
type: SpeciesReference
stoichiometry: 1.0
species: 720180

124368
type: SpeciesReference
stoichiometry: 1.0
species: 719790

719790
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Myristoyl-ACP (n-C14:0ACP)

124332
type: SpeciesReference
stoichiometry: 1.0
species: 720572

720572
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: tetradecanoate (n-C14:0)

124344
type: SpeciesReference
stoichiometry: 1.0
species: 718389

723925
type: Reaction
kinetic law: 195986
product: 195974
reactant: 195962
reactant: 195950
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g2970.t1 or CRv4_Au5.s2.g8436.t1 or CRv4_Au5.s8.g15005.t1) SUBSYSTEM: Purine metabolism
fast: false
reversible: false
name: ATP:AMP phosphotransferase, chloroplast

735438
type: LocalParameter
value: 0.0

735437
type: LocalParameter
value: 0.0

735435
type: LocalParameter
value: 1000.0

735434
type: LocalParameter
value: 0.0

195974
type: SpeciesReference
stoichiometry: 2.0
species: 718291

195962
type: SpeciesReference
stoichiometry: 1.0
species: 718501

195950
type: SpeciesReference
stoichiometry: 1.0
species: 718389

719236
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: gamma-Carotene

718002
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara[(2-b1)Ara(2-a1)Gal](3-a1)Gal(2-b1)Ara

723270
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Glycine, serine and threonine metabolism
reversible: false
reactant: 163862
name: L-2-amino-3-oxobutanoate decarboxylation (spontaneous)
kinetic law: 163898
product: 163886
product: 163874
fast: false
reactant: 163850

163862
type: SpeciesReference
stoichiometry: 1.0
species: 719412

732713
type: LocalParameter
value: 0.0

732710
type: LocalParameter
value: 0.0

732708
type: LocalParameter
value: 1000.0

732707
type: LocalParameter
value: 0.0

163886
type: SpeciesReference
stoichiometry: 1.0
species: 718663

718663
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: CO2

163874
type: SpeciesReference
stoichiometry: 1.0
species: 718182

163850
type: SpeciesReference
stoichiometry: 1.0
species: 717221

720332
type: Species
notes: FORMULA: H2SeO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Selenite

717855
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Oxotetradecanoyl-[acyl-carrier protein]

718559
type: Species
notes: FORMULA: C10H11N5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: cAMP

723954
type: Reaction
name: phosphoribosylglycinamide formyltransferase, cytosol
reversible: true
reactant: 197671
kinetic law: 197731
product: 197695
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g4077.t1 SUBSYSTEM: Purine metabolism
reactant: 197683
product: 197707
product: 197719
fast: false

197671
type: SpeciesReference
stoichiometry: 1.0
species: 717086

735579
type: LocalParameter
value: 0.0

735578
type: LocalParameter
value: 0.0

735576
type: LocalParameter
value: 1000.0

735575
type: LocalParameter
value: -1000.0

197695
type: SpeciesReference
stoichiometry: 1.0
species: 719125

719125
type: Species
notes: FORMULA: C8H12N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide

197683
type: SpeciesReference
stoichiometry: 1.0
species: 719226

719226
type: Species
notes: FORMULA: C7H13N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N1-(5-Phospho-D-ribosyl)glycinamide

197707
type: SpeciesReference
stoichiometry: 1.0
species: 719394

197719
type: SpeciesReference
stoichiometry: 1.0
species: 720488

717185
type: Species
notes: FORMULA: C5H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (R)-2,3-Dihydroxy-3-methylbutanoate

720213
type: Species
notes: FORMULA: C15H21N5O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide

720629
type: Species
notes: FORMULA: CH5N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Urea

718273
type: Species
notes: FORMULA: C2H6NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: acetamide

719344
type: Species
notes: FORMULA: C3H5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (R)-Glycerate

723740
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g369.t1 or CRv4_Au5.s13.g4785.t1) SUBSYSTEM: Pantothenate and CoA biosynthesis
fast: false
reactant: 183430
reactant: 183418
name: ATP:dephospho-CoA 3'-phosphotransferase
reversible: false
product: 183466
product: 183442
kinetic law: 183478
product: 183454

183430
type: SpeciesReference
stoichiometry: 1.0
species: 718991

718991
type: Species
notes: FORMULA: C21H33N7O13P2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dephospho-CoA

183418
type: SpeciesReference
stoichiometry: 1.0
species: 718497

183466
type: SpeciesReference
stoichiometry: 1.0
species: 719394

183442
type: SpeciesReference
stoichiometry: 1.0
species: 718287

734497
type: LocalParameter
value: 0.0

734496
type: LocalParameter
value: 0.0

734494
type: LocalParameter
value: 1000.0

734493
type: LocalParameter
value: 0.0

183454
type: SpeciesReference
stoichiometry: 1.0
species: 718665

720569
type: Species
notes: FORMULA: HS2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Thiosulfate

724316
type: Reaction
reactant: 216989
fast: false
reactant: 216977
name: dehydrodolichol diphosphate synthase
kinetic law: 217025
reversible: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Terpenoid backbone biosynthesis
product: 217013
product: 217001

216989
type: SpeciesReference
stoichiometry: 1.0
species: 720570

720570
type: Species
notes: FORMULA: C20H33O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: trans,trans,cis-Geranylgeranyl diphosphate

216977
type: SpeciesReference
stoichiometry: 7.0
species: 719583

737622
type: LocalParameter
value: 0.0

737621
type: LocalParameter
value: 0.0

737619
type: LocalParameter
value: 1000.0

737618
type: LocalParameter
value: 0.0

217013
type: SpeciesReference
stoichiometry: 7.0
species: 720179

217001
type: SpeciesReference
stoichiometry: 1.0
species: 718787

718787
type: Species
notes: FORMULA: C55H89O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dehydrodolichol diphosphate

724000
type: Reaction
reactant: 200310
reversible: true
product: 200334
product: 200322
name: phosphoribosylaminoimidazole carboxylase, cytosol
fast: false
kinetic law: 200346
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3139.t1 SUBSYSTEM: Purine metabolism
reactant: 200298

200310
type: SpeciesReference
stoichiometry: 1.0
species: 718655

718655
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: CO2

200334
type: SpeciesReference
stoichiometry: 2.0
species: 719394

200322
type: SpeciesReference
stoichiometry: 1.0
species: 718077

718077
type: Species
notes: FORMULA: C9H11N3O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

735914
type: LocalParameter
value: 0.0

735911
type: LocalParameter
value: 0.0

735908
type: LocalParameter
value: 1000.0

735905
type: LocalParameter
value: -1000.0

200298
type: SpeciesReference
stoichiometry: 1.0
species: 718325

718325
type: Species
notes: FORMULA: C8H13N3O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5-amino-1-(5-phospho-D-ribosyl)imidazole

718997
type: Species
notes: FORMULA: C27H44O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Desmosterol

717105
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1,2-Diacyl-sn-glycerol (1-(11Z)-octadecenoyl,2-hexadecanoyl, 18:1(11Z)/16:0)

720483
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Thiocysteine

719786
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Malonate semialdehyde

723010
type: Reaction
reactant: 154495
reversible: false
product: 154519
fast: false
reactant: 154507
name: sulfolipid 2'-O-acyltransferase (2'-18:3(5,9,12)/18:1(11Z)/16:0)
notes: GENE_ASSOCIATION: SUBSYSTEM: Glycerolipid metabolism
product: 154531
kinetic law: 154543

154495
type: SpeciesReference
stoichiometry: 1.0
species: 719991

719991
type: Species
notes: FORMULA: C39H60N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: pinolenyl-coa

154519
type: SpeciesReference
stoichiometry: 1.0
species: 718489

154507
type: SpeciesReference
stoichiometry: 1.0
species: 720365

154531
type: SpeciesReference
stoichiometry: 1.0
species: 718665

731770
type: LocalParameter
value: 0.0

731768
type: LocalParameter
value: 0.0

731766
type: LocalParameter
value: 1000.0

731763
type: LocalParameter
value: 0.0

723042
type: Reaction
name: triacylglycerol acylhydrolase (16:0/18:1(9Z)/18:1(9Z))
kinetic law: 155745
reversible: false
product: 155709
reactant: 155685
fast: false
product: 155721
product: 155733
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
reactant: 155697

731898
type: LocalParameter
value: 0.0

731896
type: LocalParameter
value: 0.0

731894
type: LocalParameter
value: 1000.0

731891
type: LocalParameter
value: 0.0

155709
type: SpeciesReference
stoichiometry: 1.0
species: 717097

155685
type: SpeciesReference
stoichiometry: 1.0
species: 719424

155721
type: SpeciesReference
stoichiometry: 1.0
species: 719394

155733
type: SpeciesReference
stoichiometry: 1.0
species: 719913

155697
type: SpeciesReference
stoichiometry: 1.0
species: 720416

720859
type: Reaction
kinetic law: 082616
reactant: 082604
notes: GENE_ASSOCIATION: SUBSYSTEM: Demand
fast: false
reversible: false
name: demand removing dummy o2 from system

725176
type: LocalParameter
value: 0.0

725173
type: LocalParameter
value: 0.0

725170
type: LocalParameter
value: 8.28

725167
type: LocalParameter
value: 0.0

082604
type: SpeciesReference
stoichiometry: 1.0
species: 719889

719889
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: O2 (Dummy metabolite to resolve Type IV path)

719738
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 5-Methyltetrahydropteroyltri-L-glutamate

722727
type: Reaction
reactant: 141693
reactant: 141681
reactant: 141669
product: 141730
fast: false
product: 141717
reactant: 141657
kinetic law: 141754
product: 141742
reversible: false
product: 141705
name: omega-3 desaturase (18:3(9Z,12Z,15Z)/16:3(7Z,10Z,13Z)) (DGDG)
notes: GENE_ASSOCIATION: ((CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism

141693
type: SpeciesReference
stoichiometry: 1.0
species: 719882

141681
type: SpeciesReference
stoichiometry: 4.0
species: 719835

141669
type: SpeciesReference
stoichiometry: 1.0
species: 719099

141730
type: SpeciesReference
stoichiometry: 2.0
species: 719430

141717
type: SpeciesReference
stoichiometry: 1.0
species: 719107

141657
type: SpeciesReference
stoichiometry: 1.0
species: 718813

730789
type: LocalParameter
value: 0.0

730788
type: LocalParameter
value: 0.0

730787
type: LocalParameter
value: 1000.0

730785
type: LocalParameter
value: 0.0

141742
type: SpeciesReference
stoichiometry: 4.0
species: 719823

141705
type: SpeciesReference
stoichiometry: 1.0
species: 718821

724397
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g799.t1 SUBSYSTEM: Valine, leucine and isoleucine degradation;Valine, leucine and isoleucine biosynthesis
name: branched-chain-amino-acid transaminase, glutamate forming, chloroplast
reversible: true
kinetic law: 220872
reactant: 220822
fast: false
reactant: 220834
product: 220847
product: 220859

737946
type: LocalParameter
value: 0.0

737944
type: LocalParameter
value: 0.0

737943
type: LocalParameter
value: 1000.0

737942
type: LocalParameter
value: -1000.0

220822
type: SpeciesReference
stoichiometry: 1.0
species: 718331

220834
type: SpeciesReference
stoichiometry: 1.0
species: 719612

719612
type: Species
notes: FORMULA: C6H13NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Leucine

220847
type: SpeciesReference
stoichiometry: 1.0
species: 718035

718035
type: Species
notes: FORMULA: C6H9O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 4-Methyl-2-oxopentanoate

220859
type: SpeciesReference
stoichiometry: 1.0
species: 719298

724061
type: Reaction
reversible: false
product: 203608
name: 2'-Deoxycytidine diphosphate:oxidized-thioredoxin 2'-oxidoreductase
notes: GENE_ASSOCIATION: ((CRv4_Au5.s12.g2932.t1 and CRv4_Au5.s12.g2898.t1 and CRv4_Au5.s12.g4161.t1) or (CRv4_Au5.s12.g2932.t1 and CRv4_Au5.s12.g2898.t1 and CRv4_Au5.s9.g15314.t1) or (CRv4_Au5.s12.g2932.t1 and CRv4_Au5.s12.g3262.t1 and CRv4_Au5.s12.g4161.t1) or (CRv4_Au5.s12.g2932.t1 and CRv4_Au5.s12.g3262.t1 and CRv4_Au5.s9.g15314.t1)) SUBSYSTEM: Pyrimidine metabolism
kinetic law: 203620
fast: false
product: 203596
product: 203584
reactant: 203559
reactant: 203571

203608
type: SpeciesReference
stoichiometry: 1.0
species: 720512

720512
type: Species
notes: FORMULA: C6H7NO2S2R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Oxidized thioredoxin

736362
type: LocalParameter
value: 0.0

736359
type: LocalParameter
value: 0.0

736356
type: LocalParameter
value: 1000.0

736355
type: LocalParameter
value: 0.0

203596
type: SpeciesReference
stoichiometry: 1.0
species: 719424

203584
type: SpeciesReference
stoichiometry: 1.0
species: 718759

718759
type: Species
notes: FORMULA: C9H12N3O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dCDP

203559
type: SpeciesReference
stoichiometry: 1.0
species: 718587

718587
type: Species
notes: FORMULA: C9H12N3O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: CDP

203571
type: SpeciesReference
stoichiometry: 1.0
species: 720515

720515
type: Species
notes: FORMULA: C6H9NO2S2R2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Reduced thioredoxin

722160
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8757.t1 or CRv4_Au5.s2.g9246.t1 or CRv4_Au5.s6.g12556.t1) SUBSYSTEM: Cysteine metabolism
reversible: false
fast: false
name: aspartate aminotransferase, cysteine forming, mitochondria
product: 116342
kinetic law: 116366
reactant: 116318
product: 116354
reactant: 116330

116342
type: SpeciesReference
stoichiometry: 1.0
species: 718331

728868
type: LocalParameter
value: 0.0

728866
type: LocalParameter
value: 0.0

728864
type: LocalParameter
value: 1000.0

728863
type: LocalParameter
value: 0.0

116318
type: SpeciesReference
stoichiometry: 1.0
species: 719298

116354
type: SpeciesReference
stoichiometry: 1.0
species: 718699

718699
type: Species
notes: FORMULA: C3H7NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Cysteine

116330
type: SpeciesReference
stoichiometry: 1.0
species: 719685

719685
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Mercaptopyruvate

719955
type: Species
notes: FORMULA: C39H67O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-octadecanoyl,2-(5Z,9Z,12Z,15Z)-octadecatetraenoyl-sn-glycerol 3-phosphate

721105
type: Reaction
reversible: false
name: Thiosulfate porter, chloroplast
reactant: 088160
notes: GENE_ASSOCIATION: ((CRv4_Au5.s6.g12536.t1 and CRv4_Au5.s7.g14404.t1) or (CRv4_Au5.s6.g12536.t1 and CRv4_Au5.s6.g12873.t1)) SUBSYSTEM: Transport, chloroplast
kinetic law: 088244
reactant: 088184
fast: false
product: 088208
reactant: 088172
product: 088220
product: 088232
product: 088196

088160
type: SpeciesReference
stoichiometry: 1.0
species: 718497

726138
type: LocalParameter
value: 0.0

726135
type: LocalParameter
value: 0.0

726134
type: LocalParameter
value: 1000.0

726131
type: LocalParameter
value: 0.0

088184
type: SpeciesReference
stoichiometry: 1.0
species: 720564

720564
type: Species
notes: FORMULA: HS2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Thiosulfate

088208
type: SpeciesReference
stoichiometry: 1.0
species: 719394

088172
type: SpeciesReference
stoichiometry: 1.0
species: 719424

088220
type: SpeciesReference
stoichiometry: 1.0
species: 720137

088232
type: SpeciesReference
stoichiometry: 1.0
species: 720567

088196
type: SpeciesReference
stoichiometry: 1.0
species: 718287

720518
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Trehalose

720591
type: Species
notes: FORMULA: C14H20N2O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: UDP-L-arabinose

721401
type: Reaction
reactant: 095817
fast: false
reactant: 095804
product: 095830
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6506.t1 SUBSYSTEM: Transport, mitochondria
product: 095843
reversible: true
name: Dicarboxylate/tricarboxylate carrier (akg:icit), mitochondrial
kinetic law: 095856

095817
type: SpeciesReference
stoichiometry: 1.0
species: 719555

719555
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Isocitrate

095804
type: SpeciesReference
stoichiometry: 1.0
species: 718329

095830
type: SpeciesReference
stoichiometry: 1.0
species: 718333

095843
type: SpeciesReference
stoichiometry: 1.0
species: 719552

719552
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Isocitrate

726940
type: LocalParameter
value: 0.0

726939
type: LocalParameter
value: 0.0

726937
type: LocalParameter
value: 1000.0

726936
type: LocalParameter
value: -1000.0

723071
type: Reaction
reactant: 156748
product: 156784
reversible: false
fast: false
product: 156760
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
product: 156772
kinetic law: 156796
name: triacylglycerol acylhydrolase (18:1(11Z)/18:1(9Z)/16:0)
reactant: 156736

156748
type: SpeciesReference
stoichiometry: 1.0
species: 720438

156784
type: SpeciesReference
stoichiometry: 1.0
species: 719470

156760
type: SpeciesReference
stoichiometry: 1.0
species: 717109

156772
type: SpeciesReference
stoichiometry: 1.0
species: 719394

732018
type: LocalParameter
value: 0.0

732016
type: LocalParameter
value: 0.0

732014
type: LocalParameter
value: 1000.0

732011
type: LocalParameter
value: 0.0

156736
type: SpeciesReference
stoichiometry: 1.0
species: 719424

720056
type: Species
notes: FORMULA: C41H74NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: phosphatidylethanolamine (18:1(9Z)/18:3(5Z,9Z,12Z))

721769
type: Reaction
reversible: false
product: 106324
product: 106312
reactant: 106288
product: 106300
name: pantoate---beta-alanine ligase
reactant: 106264
kinetic law: 106348
reactant: 106276
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8605.t2 SUBSYSTEM: beta-Alanine metabolism
product: 106336
fast: false

106324
type: SpeciesReference
stoichiometry: 1.0
species: 720155

106312
type: SpeciesReference
stoichiometry: 2.0
species: 719394

106288
type: SpeciesReference
stoichiometry: 1.0
species: 720002

720002
type: Species
notes: FORMULA: C6H11O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (R)-Pantoate

106300
type: SpeciesReference
stoichiometry: 1.0
species: 718387

106264
type: SpeciesReference
stoichiometry: 1.0
species: 718335

718335
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: beta-Alanine

727861
type: LocalParameter
value: 0.0

727860
type: LocalParameter
value: 0.0

727859
type: LocalParameter
value: 1000.0

727857
type: LocalParameter
value: 0.0

106276
type: SpeciesReference
stoichiometry: 1.0
species: 718497

106336
type: SpeciesReference
stoichiometry: 1.0
species: 720179

721433
type: Reaction
kinetic law: 096720
product: 096708
reactant: 096696
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: CO2 transport, mitochondrial

727020
type: LocalParameter
value: 0.0

727019
type: LocalParameter
value: 0.0

727017
type: LocalParameter
value: 1000.0

727016
type: LocalParameter
value: -1000.0

096708
type: SpeciesReference
stoichiometry: 1.0
species: 718661

096696
type: SpeciesReference
stoichiometry: 1.0
species: 718655

721187
type: Reaction
kinetic law: 090126
product: 090114
reactant: 090102
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, extracellular
fast: false
reversible: true
name: ornithine transport via diffusion

726384
type: LocalParameter
value: 0.0

726383
type: LocalParameter
value: 0.0

726381
type: LocalParameter
value: 1000.0

726380
type: LocalParameter
value: -1000.0

090114
type: SpeciesReference
stoichiometry: 1.0
species: 719930

090102
type: SpeciesReference
stoichiometry: 1.0
species: 719931

719931
type: Species
notes: FORMULA: C5H13N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: L-Ornithine

719482
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: trans-Hexadec-2-enoyl-CoA

719174
type: Species
notes: FORMULA: CH4NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Formamide

724312
type: Reaction
reversible: false
product: 216809
name: succinate dehydrogenase Complex II
reactant: 216773
reactant: 216785
product: 216797
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1377.t1 SUBSYSTEM: TCA cycle;Oxidative phosphorylation
fast: false
kinetic law: 216821

216809
type: SpeciesReference
stoichiometry: 1.0
species: 719186

719186
type: Species
notes: FORMULA: C4H2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Fumarate

216773
type: SpeciesReference
stoichiometry: 1.0
species: 719075

719075
type: Species
notes: FORMULA: C27H31N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Flavin adenine dinucleotide oxidized

216785
type: SpeciesReference
stoichiometry: 1.0
species: 720389

216797
type: SpeciesReference
stoichiometry: 1.0
species: 719083

719083
type: Species
notes: FORMULA: C27H33N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Flavin adenine dinucleotide reduced

737606
type: LocalParameter
value: 0.0

737604
type: LocalParameter
value: 0.0

737603
type: LocalParameter
value: 1000.0

737601
type: LocalParameter
value: 0.0

722788
type: Reaction
reactant: 145287
reactant: 145274
product: 145311
product: 145299
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g12863.t1 SUBSYSTEM: Glycerolipid metabolism
fast: false
reversible: false
name: glycerol-3-phosphate: acyl-coa acyltransferase (18:1(9Z))
kinetic law: 145323

145287
type: SpeciesReference
stoichiometry: 1.0
species: 719916

145274
type: SpeciesReference
stoichiometry: 1.0
species: 719330

145311
type: SpeciesReference
stoichiometry: 1.0
species: 718665

145299
type: SpeciesReference
stoichiometry: 1.0
species: 717171

730994
type: LocalParameter
value: 0.0

730993
type: LocalParameter
value: 0.0

730992
type: LocalParameter
value: 1000.0

730990
type: LocalParameter
value: 0.0

718927
type: Species
notes: FORMULA: C10H12N4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Deoxyinosine

723933
type: Reaction
reversible: false
kinetic law: 196407
product: 196395
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8501.t1 or CRv4_Au5.s2.g9400.t1 or CRv4_Au5.s8.g15010.t1) SUBSYSTEM: Purine metabolism
reactant: 196359
fast: false
name: ATP:dGMP phosphotransferase
product: 196383
reactant: 196371

735474
type: LocalParameter
value: 0.0

735473
type: LocalParameter
value: 0.0

735472
type: LocalParameter
value: 1000.0

735470
type: LocalParameter
value: 0.0

196395
type: SpeciesReference
stoichiometry: 1.0
species: 718825

718825
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dGDP

196359
type: SpeciesReference
stoichiometry: 1.0
species: 718497

196383
type: SpeciesReference
stoichiometry: 1.0
species: 718287

196371
type: SpeciesReference
stoichiometry: 1.0
species: 718841

718841
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dGMP

722245
type: Reaction
reactant: 119285
product: 119321
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0)
fast: false
reactant: 119297
kinetic law: 119345
product: 119333
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g10590.t1)) SUBSYSTEM: Fatty acid biosynthesis
reactant: 119309
reversible: false

119285
type: SpeciesReference
stoichiometry: 1.0
species: 717867

717867
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Oxooctadecanoyl-[acyl-carrier protein]

119321
type: SpeciesReference
stoichiometry: 1.0
species: 717756

717756
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]

119297
type: SpeciesReference
stoichiometry: 1.0
species: 719402

729117
type: LocalParameter
value: 0.0

729115
type: LocalParameter
value: 0.0

729114
type: LocalParameter
value: 1000.0

729112
type: LocalParameter
value: 0.0

119333
type: SpeciesReference
stoichiometry: 1.0
species: 719823

119309
type: SpeciesReference
stoichiometry: 1.0
species: 719835

720251
type: Species
notes: FORMULA: C3H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717074
name: Pyruvate

723965
type: Reaction
fast: false
product: 198525
product: 198513
name: GMP synthase, mitochondria
kinetic law: 198549
reactant: 198489
product: 198537
reversible: false
reactant: 198465
reactant: 198477
product: 198501
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8657.t1 SUBSYSTEM: Purine metabolism

198525
type: SpeciesReference
stoichiometry: 4.0
species: 719404

198513
type: SpeciesReference
stoichiometry: 1.0
species: 719356

719356
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: GMP

735654
type: LocalParameter
value: 0.0

735651
type: LocalParameter
value: 0.0

735648
type: LocalParameter
value: 1000.0

735645
type: LocalParameter
value: 0.0

198489
type: SpeciesReference
stoichiometry: 1.0
species: 720657

198537
type: SpeciesReference
stoichiometry: 1.0
species: 720182

198465
type: SpeciesReference
stoichiometry: 1.0
species: 718503

198477
type: SpeciesReference
stoichiometry: 1.0
species: 719852

198501
type: SpeciesReference
stoichiometry: 1.0
species: 718391

722311
type: Reaction
name: beta-ketoacyl-ACP synthase
reactant: 122575
product: 122611
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s10.g406.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s4.g11616.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s7.g14144.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s22.g9840.t1)) SUBSYSTEM: Fatty acid biosynthesis
fast: false
product: 122599
reversible: false
product: 122587
kinetic law: 122623
reactant: 122563

122575
type: SpeciesReference
stoichiometry: 1.0
species: 719658

719658
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Malonyl-[acyl-carrier protein]

122611
type: SpeciesReference
stoichiometry: 1.0
species: 718659

122599
type: SpeciesReference
stoichiometry: 1.0
species: 718265

718265
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Acetoacetyl-ACP

122587
type: SpeciesReference
stoichiometry: 1.0
species: 718257

729359
type: LocalParameter
value: 0.0

729357
type: LocalParameter
value: 0.0

729356
type: LocalParameter
value: 1000.0

729354
type: LocalParameter
value: 0.0

122563
type: SpeciesReference
stoichiometry: 1.0
species: 718209

718023
type: Species
notes: FORMULA: C6H6N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 4-Imidazolone-5-propanoate

721798
type: Reaction
kinetic law: 107400
product: 107387
reactant: 107375
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g4221.t1 or CRv4_Au5.s12.g4222.t1) SUBSYSTEM: Biosynthesis of steroids
fast: false
reversible: false
name: 5alpha-cholest-7-en-3beta-ol delta7-delta8-isomerase

727934
type: LocalParameter
value: 0.0

727933
type: LocalParameter
value: 0.0

727931
type: LocalParameter
value: 1000.0

727930
type: LocalParameter
value: 0.0

107387
type: SpeciesReference
stoichiometry: 1.0
species: 719642

719642
type: Species
notes: FORMULA: C27H46O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Lathosterol

107375
type: SpeciesReference
stoichiometry: 1.0
species: 720671

720671
type: Species
notes: FORMULA: C27H46O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Zymostenol

722058
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s17.g7679.t1 or CRv4_Au5.s2.g9059.t1) SUBSYSTEM: Carotenoid biosynthesis
product: 114039
reactant: 114015
reactant: 113978
reactant: 113990
name: alpha-carotene hydroxylase (zeinoxanthin forming)
reactant: 114002
product: 114051
product: 114027
kinetic law: 114064
fast: false

114039
type: SpeciesReference
stoichiometry: 1.0
species: 719829

114015
type: SpeciesReference
stoichiometry: 1.0
species: 719886

113978
type: SpeciesReference
stoichiometry: 1.0
species: 718223

718223
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: alpha-Carotene

113990
type: SpeciesReference
stoichiometry: 1.0
species: 719410

114002
type: SpeciesReference
stoichiometry: 1.0
species: 719841

114051
type: SpeciesReference
stoichiometry: 1.0
species: 720668

720668
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Zeinoxanthin

114027
type: SpeciesReference
stoichiometry: 1.0
species: 719438

728658
type: LocalParameter
value: 0.0

728656
type: LocalParameter
value: 0.0

728654
type: LocalParameter
value: 1000.0

728653
type: LocalParameter
value: 0.0

718781
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Dodecanoyl-CoA (n-C12:0CoA)

719673
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-mannose 1-phosphate

719687
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Mercaptopyruvate

723199
type: Reaction
product: 161329
reversible: false
fast: false
product: 161342
kinetic law: 161366
notes: GENE_ASSOCIATION: SUBSYSTEM: Glycerophospholipid metabolism
name: phosphatidylglycerol phosphate phosphatase (18:1(9Z)/16:0), chloroplast
reactant: 161305
product: 161354
reactant: 161317

161329
type: SpeciesReference
stoichiometry: 2.0
species: 719402

161342
type: SpeciesReference
stoichiometry: 1.0
species: 720078

732467
type: LocalParameter
value: 0.0

732464
type: LocalParameter
value: 0.0

732462
type: LocalParameter
value: 1000.0

732461
type: LocalParameter
value: 0.0

161305
type: SpeciesReference
stoichiometry: 1.0
species: 719430

161354
type: SpeciesReference
stoichiometry: 1.0
species: 720141

161317
type: SpeciesReference
stoichiometry: 1.0
species: 720095

720095
type: Species
notes: FORMULA: C40H78O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phosphatidylglycerophosphate (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

723780
type: Reaction
kinetic law: 186149
product: 186137
product: 186124
reactant: 186112
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g2164.t1 SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis
fast: false
reversible: false
name: Chorismate synthase

734719
type: LocalParameter
value: 0.0

734718
type: LocalParameter
value: 0.0

734694
type: LocalParameter
value: 1000.0

734693
type: LocalParameter
value: 0.0

186137
type: SpeciesReference
stoichiometry: 1.0
species: 720141

186124
type: SpeciesReference
stoichiometry: 1.0
species: 718621

186112
type: SpeciesReference
stoichiometry: 1.0
species: 717903

717903
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 5-O-(1-Carboxyvinyl)-3-phosphoshikimate

723633
type: Reaction
reactant: 176797
fast: false
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s14.g5384.t1 SUBSYSTEM: N-Glycan biosynthesis
name: alpha-1,3-mannosyltransferase (doldpglcnacglcnacmanman)
product: 176821
reactant: 176785
product: 176833
product: 176809
kinetic law: 176845

176797
type: SpeciesReference
stoichiometry: 1.0
species: 719244

719244
type: Species
notes: FORMULA: C16H23N5O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: GDP-D-mannose

176821
type: SpeciesReference
stoichiometry: 1.0
species: 719238

719238
type: Species
notes: FORMULA: C10H12N5O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: GDP

176785
type: SpeciesReference
stoichiometry: 1.0
species: 718961

718961
type: Species
notes: FORMULA: C77H130N2O22P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man

176833
type: SpeciesReference
stoichiometry: 1.0
species: 719394

176809
type: SpeciesReference
stoichiometry: 1.0
species: 718983

718983
type: Species
notes: FORMULA: C83H140N2O27P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man(3-a1)Man

733994
type: LocalParameter
value: 0.0

733992
type: LocalParameter
value: 0.0

733991
type: LocalParameter
value: 1000.0

733990
type: LocalParameter
value: 0.0

723705
type: Reaction
reactant: 180993
notes: GENE_ASSOCIATION: SUBSYSTEM: O-Glycan biosynthesis
reversible: false
reactant: 181005
name: UDP-arabinose:O-glycan 1,2-beta-L-arabinosyltransferase (4hproara(aragalara)gal)
kinetic law: 181041
fast: false
product: 181029
product: 181017

180993
type: SpeciesReference
stoichiometry: 1.0
species: 717999

717999
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara[(2-b1)Ara(2-a1)Gal](3-a1)Gal

181005
type: SpeciesReference
stoichiometry: 1.0
species: 720593

734298
type: LocalParameter
value: 0.0

734296
type: LocalParameter
value: 0.0

734295
type: LocalParameter
value: 1000.0

734294
type: LocalParameter
value: 0.0

181029
type: SpeciesReference
stoichiometry: 1.0
species: 720585

181017
type: SpeciesReference
stoichiometry: 1.0
species: 717996

717996
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara[(2-b1)Ara(2-a1)Gal(2-b1)Ara](3-a1)Gal

719510
type: Species
notes: FORMULA: C6H13N3O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Histidinol

719452
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Hydrogen sulfide

718044
type: Species
notes: FORMULA: C29H45O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 4alpha-Methylzymosterol-4-carboxylate

719115
type: Species
notes: FORMULA: Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Fe2+

720618
type: Species
notes: FORMULA: C4H4N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Uracil

722870
type: Reaction
fast: false
reactant: 149885
reversible: false
reactant: 149909
name: delta5 desaturase (18:1(9Z)/18:3(5Z,9Z,12Z)) (PE)
reactant: 149897
product: 149921
kinetic law: 149958
product: 149934
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g712.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
product: 149946

149885
type: SpeciesReference
stoichiometry: 2.0
species: 719811

149909
type: SpeciesReference
stoichiometry: 1.0
species: 720051

149897
type: SpeciesReference
stoichiometry: 1.0
species: 719879

149921
type: SpeciesReference
stoichiometry: 2.0
species: 719424

731275
type: LocalParameter
value: 0.0

731274
type: LocalParameter
value: 0.0

731273
type: LocalParameter
value: 1000.0

731272
type: LocalParameter
value: 0.0

149934
type: SpeciesReference
stoichiometry: 2.0
species: 719801

149946
type: SpeciesReference
stoichiometry: 1.0
species: 720054

718233
type: Species
notes: FORMULA: C23H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Acetyl-CoA

720341
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Siroheme

723050
type: Reaction
reactant: 155962
name: triacylglycerol acylhydrolase (18:0/18:1(9Z)/18:0)
reactant: 155974
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
product: 155998
kinetic law: 156022
product: 156010
reversible: false
product: 155986
fast: false

155962
type: SpeciesReference
stoichiometry: 1.0
species: 719424

155974
type: SpeciesReference
stoichiometry: 1.0
species: 720422

155998
type: SpeciesReference
stoichiometry: 1.0
species: 719394

731930
type: LocalParameter
value: 0.0

731928
type: LocalParameter
value: 0.0

731926
type: LocalParameter
value: 1000.0

731923
type: LocalParameter
value: 0.0

156010
type: SpeciesReference
stoichiometry: 1.0
species: 719907

719907
type: Species
notes: FORMULA: C18H35O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: octadecanoate (n-C18:0)

155986
type: SpeciesReference
stoichiometry: 1.0
species: 717101

722241
type: Reaction
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)
reactant: 119091
fast: false
reversible: true
reactant: 119079
product: 119104
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g10590.t1)) SUBSYSTEM: Fatty acid biosynthesis
kinetic law: 119128
product: 119116
reactant: 119067

119091
type: SpeciesReference
stoichiometry: 1.0
species: 719835

119079
type: SpeciesReference
stoichiometry: 1.0
species: 719402

119104
type: SpeciesReference
stoichiometry: 1.0
species: 717705

717705
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-Hydroxydodecanoyl-[acyl-carrier protein]

729100
type: LocalParameter
value: 0.0

729099
type: LocalParameter
value: 0.0

729097
type: LocalParameter
value: 1000.0

729096
type: LocalParameter
value: -1000.0

119116
type: SpeciesReference
stoichiometry: 1.0
species: 719823

119067
type: SpeciesReference
stoichiometry: 1.0
species: 717834

717834
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Oxododecanoyl-[acyl-carrier protein]

718635
type: Species
notes: FORMULA: C18H14FNO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Citalopram aldehyde

723734
type: Reaction
kinetic law: 183116
product: 183104
reactant: 183092
reactant: 183080
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g135.t1 or CRv4_Au5.s2.g9250.t1 or CRv4_Au5.s2.g9408.t1) SUBSYSTEM: Oxidative phosphorylation
fast: false
reversible: false
name: Inorganic diphosphatase

734467
type: LocalParameter
value: 0.0

734466
type: LocalParameter
value: 0.0

734464
type: LocalParameter
value: 1000.0

734463
type: LocalParameter
value: 0.0

183104
type: SpeciesReference
stoichiometry: 2.0
species: 720141

183092
type: SpeciesReference
stoichiometry: 1.0
species: 720180

183080
type: SpeciesReference
stoichiometry: 1.0
species: 719430

720270
type: Species
notes: FORMULA: C14H18N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N1-(alpha-D-ribosyl)-5,6-dimethylbenzimidazole

722767
type: Reaction
reactant: 144214
reversible: false
reactant: 144226
kinetic law: 144274
fast: false
product: 144262
product: 144250
product: 144238
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4859.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
name: oleate desaturase (18:2(9Z,12Z)/18:4(5Z,9Z,12Z,15Z))
reactant: 144201

144214
type: SpeciesReference
stoichiometry: 2.0
species: 719811

144226
type: SpeciesReference
stoichiometry: 1.0
species: 719879

730924
type: LocalParameter
value: 0.0

730923
type: LocalParameter
value: 0.0

730922
type: LocalParameter
value: 1000.0

730920
type: LocalParameter
value: 0.0

144262
type: SpeciesReference
stoichiometry: 2.0
species: 719801

144250
type: SpeciesReference
stoichiometry: 2.0
species: 719424

144238
type: SpeciesReference
stoichiometry: 1.0
species: 718887

144201
type: SpeciesReference
stoichiometry: 1.0
species: 718885

723916
type: Reaction
product: 195467
kinetic law: 195479
reactant: 195442
product: 195455
name: APS:ATP adenylyltransferase
reactant: 195430
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6038.t1 SUBSYSTEM: Purine metabolism
reversible: false

195467
type: SpeciesReference
stoichiometry: 1.0
species: 720350

720350
type: Species
notes: FORMULA: SO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Sulfate

735398
type: LocalParameter
value: 0.0

735397
type: LocalParameter
value: 0.0

735396
type: LocalParameter
value: 1000.0

735394
type: LocalParameter
value: 0.0

195442
type: SpeciesReference
stoichiometry: 1.0
species: 718505

718505
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: ATP

195455
type: SpeciesReference
stoichiometry: 1.0
species: 718401

718401
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: P1,P4-Bis(5'-adenosyl) tetraphosphate

195430
type: SpeciesReference
stoichiometry: 1.0
species: 718423

718423
type: Species
notes: FORMULA: C10H12N5O10PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Adenosine 5'-phosphosulfate

721113
type: Reaction
kinetic law: 088473
product: 088461
product: 088449
reactant: 088437
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: UDP transport via diffusion, chloroplast

726166
type: LocalParameter
value: 0.0

726163
type: LocalParameter
value: 0.0

726162
type: LocalParameter
value: 1000.0

726159
type: LocalParameter
value: -1000.0

088461
type: SpeciesReference
stoichiometry: 1.0
species: 720587

720587
type: Species
notes: FORMULA: C9H11N2O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: UDP

088449
type: SpeciesReference
stoichiometry: 1.0
species: 719402

088437
type: SpeciesReference
stoichiometry: 1.0
species: 720584

722224
type: Reaction
reversible: false
fast: false
name: thioguanine phosphoribosyltransferase
reactant: 118512
product: 118524
kinetic law: 118548
product: 118536
reactant: 118500
notes: GENE_ASSOCIATION: (CRv4_Au5.s17.g7207.t1 or CRv4_Au5.s3.g11336.t1 or CRv4_Au5.s8.g14643.t1) SUBSYSTEM: Drug metabolism - other enzymes

118512
type: SpeciesReference
stoichiometry: 1.0
species: 720480

118524
type: SpeciesReference
stoichiometry: 1.0
species: 718161

729036
type: LocalParameter
value: 0.0

729034
type: LocalParameter
value: 0.0

729032
type: LocalParameter
value: 1000.0

729031
type: LocalParameter
value: 0.0

118536
type: SpeciesReference
stoichiometry: 1.0
species: 720179

118500
type: SpeciesReference
stoichiometry: 1.0
species: 720227

720227
type: Species
notes: FORMULA: C5H8O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5-Phospho-alpha-D-ribose 1-diphosphate

721145
type: Reaction
reactant: 089125
reactant: 089113
product: 089185
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g2332.t1 or CRv4_Au5.s1.g2332.t2 or CRv4_Au5.s3.g10595.t1) SUBSYSTEM: Transport, extracellular
product: 089173
reversible: false
fast: false
reactant: 089137
product: 089161
kinetic law: 089197
product: 089149
name: ferrous iron uptake (GTP-dependent), plasma membrane

089125
type: SpeciesReference
stoichiometry: 1.0
species: 719382

089113
type: SpeciesReference
stoichiometry: 1.0
species: 719115

089185
type: SpeciesReference
stoichiometry: 1.0
species: 720137

089173
type: SpeciesReference
stoichiometry: 1.0
species: 719394

089137
type: SpeciesReference
stoichiometry: 1.0
species: 719424

089161
type: SpeciesReference
stoichiometry: 1.0
species: 719238

726269
type: LocalParameter
value: 0.0

726267
type: LocalParameter
value: 0.0

726266
type: LocalParameter
value: 1000.0

726264
type: LocalParameter
value: 0.0

089149
type: SpeciesReference
stoichiometry: 1.0
species: 719113

719113
type: Species
notes: FORMULA: Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Fe2+

721777
type: Reaction
kinetic law: 106649
product: 106613
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4640.t1 SUBSYSTEM: beta-Alanine metabolism;Pyrimidine metabolism
fast: false
product: 106625
reactant: 106589
reactant: 106601
name: dihydropyrimidine dehydrogenase (NADP+)
reversible: true
product: 106637

727881
type: LocalParameter
value: 0.0

727880
type: LocalParameter
value: 0.0

727879
type: LocalParameter
value: 1000.0

727877
type: LocalParameter
value: -1000.0

106613
type: SpeciesReference
stoichiometry: 1.0
species: 719394

106625
type: SpeciesReference
stoichiometry: 1.0
species: 719832

106589
type: SpeciesReference
stoichiometry: 1.0
species: 718074

106601
type: SpeciesReference
stoichiometry: 1.0
species: 719820

106637
type: SpeciesReference
stoichiometry: 1.0
species: 720618

719306
type: Species
notes: FORMULA: C2HO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Glyoxylate

721327
type: Reaction
kinetic law: 094246
product: 094234
reactant: 094222
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
fast: false
reversible: true
name: acetaldehyde transport via diffusion, glyoxysome

726755
type: LocalParameter
value: 0.0

726754
type: LocalParameter
value: 0.0

726752
type: LocalParameter
value: 1000.0

726751
type: LocalParameter
value: -1000.0

094234
type: SpeciesReference
stoichiometry: 1.0
species: 718219

718219
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Acetaldehyde

094222
type: SpeciesReference
stoichiometry: 1.0
species: 718212

718212
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Acetaldehyde

721195
type: Reaction
name: Aminophospholipid translocase (pe1801829Z12Z), extracellular
reactant: 090426
reversible: false
reactant: 090439
reactant: 090451
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3783.t1 or CRv4_Au5.s12.g3784.t1 or CRv4_Au5.s16.g6192.t1) SUBSYSTEM: Transport, extracellular
product: 090488
kinetic law: 090512
product: 090464
product: 090500
product: 090476
fast: false

090426
type: SpeciesReference
stoichiometry: 1.0
species: 718497

090439
type: SpeciesReference
stoichiometry: 1.0
species: 719424

090451
type: SpeciesReference
stoichiometry: 1.0
species: 720027

720027
type: Species
notes: FORMULA: C41H78NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:0/18:2(9Z,12Z))

090488
type: SpeciesReference
stoichiometry: 1.0
species: 720029

720029
type: Species
notes: FORMULA: C41H78NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: phosphatidylethanolamine (18:0/18:2(9Z,12Z))

726406
type: LocalParameter
value: 0.0

726405
type: LocalParameter
value: 0.0

726403
type: LocalParameter
value: 1000.0

726402
type: LocalParameter
value: 0.0

090464
type: SpeciesReference
stoichiometry: 1.0
species: 718287

090500
type: SpeciesReference
stoichiometry: 1.0
species: 720137

090476
type: SpeciesReference
stoichiometry: 1.0
species: 719394

720362
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Spermine

721959
type: Reaction
reactant: 111593
kinetic law: 111654
fast: false
reactant: 111606
reactant: 111618
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9503.t1 SUBSYSTEM: Butanoate metabolism
product: 111642
reversible: false
name: butanol synthase
product: 111630

111593
type: SpeciesReference
stoichiometry: 1.0
species: 718531

718531
type: Species
notes: FORMULA: C4H8O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Butanal

728439
type: LocalParameter
value: 0.0

728436
type: LocalParameter
value: 0.0

728433
type: LocalParameter
value: 1000.0

728432
type: LocalParameter
value: 0.0

111606
type: SpeciesReference
stoichiometry: 1.0
species: 719394

111618
type: SpeciesReference
stoichiometry: 1.0
species: 719811

111642
type: SpeciesReference
stoichiometry: 1.0
species: 719801

111630
type: SpeciesReference
stoichiometry: 1.0
species: 717157

717157
type: Species
notes: FORMULA: C4H10O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-Butanol

722796
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1537.t1 or CRv4_Au5.s1.g1743.t1) SUBSYSTEM: Glycerolipid metabolism
reversible: false
fast: false
product: 145635
reactant: 145623
name: 1-acylglycerol acylhydrolase (16:0)
product: 145647
product: 145659
reactant: 145611
kinetic law: 145672

145635
type: SpeciesReference
stoichiometry: 1.0
species: 719326

145623
type: SpeciesReference
stoichiometry: 1.0
species: 719652

719652
type: Species
notes: FORMULA: C19H38O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-monoacylglycerol (16:0)

145647
type: SpeciesReference
stoichiometry: 1.0
species: 719394

145659
type: SpeciesReference
stoichiometry: 1.0
species: 719470

145611
type: SpeciesReference
stoichiometry: 1.0
species: 719424

731019
type: LocalParameter
value: 0.0

731018
type: LocalParameter
value: 0.0

731017
type: LocalParameter
value: 1000.0

731015
type: LocalParameter
value: 0.0

718967
type: Species
notes: FORMULA: C137H230N2O72P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man(3-a1)Glc(3-a1)Glc

722139
type: Reaction
fast: false
kinetic law: 115850
reactant: 115802
reactant: 115814
product: 115826
product: 115838
notes: GENE_ASSOCIATION: (CRv4_Au5.s60.g12367.t1 or CRv4_Au5.s6.g12661.t1 or CRv4_Au5.s6.g12662.t1 or CRv4_Au5.s6.g12663.t1) SUBSYSTEM: Cysteine and methionine metabolism
name: O-succinyl-L-homoserine succinate-lyase (adding hydrogen sulfide)
reversible: false

728820
type: LocalParameter
value: 0.0

728818
type: LocalParameter
value: 0.0

728816
type: LocalParameter
value: 1000.0

728815
type: LocalParameter
value: 0.0

115802
type: SpeciesReference
stoichiometry: 1.0
species: 719452

115814
type: SpeciesReference
stoichiometry: 1.0
species: 720393

720393
type: Species
notes: FORMULA: C8H12NO6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: O-Succinyl-L-homoserine

115826
type: SpeciesReference
stoichiometry: 1.0
species: 719466

115838
type: SpeciesReference
stoichiometry: 1.0
species: 720387

720387
type: Species
notes: FORMULA: C4H4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Succinate

723973
type: Reaction
product: 198935
product: 198923
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g2037.t1 or CRv4_Au5.s16.g6042.t1 or CRv4_Au5.s7.g13848.t1 or CRv4_Au5.s7.g13857.t1 or CRv4_Au5.s7.g14405.t1 or CRv4_Au5.s9.g15223.t1 or CRv4_Au5.s9.g15248.t1) SUBSYSTEM: Purine metabolism
reversible: false
product: 198948
kinetic law: 198960
reactant: 198911
fast: false
name: guanylate cyclase

198935
type: SpeciesReference
stoichiometry: 1.0
species: 719394

198923
type: SpeciesReference
stoichiometry: 1.0
species: 717648

717648
type: Species
notes: FORMULA: C10H10N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3',5'-Cyclic GMP

198948
type: SpeciesReference
stoichiometry: 1.0
species: 720179

735714
type: LocalParameter
value: 0.0

735711
type: LocalParameter
value: 0.0

735708
type: LocalParameter
value: 1000.0

735705
type: LocalParameter
value: 0.0

198911
type: SpeciesReference
stoichiometry: 1.0
species: 719382

722978
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
kinetic law: 153578
name: phospholipid: diacylglycerol acyltransferase (18:1(11Z))
fast: false
product: 153554
reactant: 153530
reversible: false
reactant: 153542
product: 153566

731654
type: LocalParameter
value: 0.0

731652
type: LocalParameter
value: 0.0

731650
type: LocalParameter
value: 1000.0

731648
type: LocalParameter
value: 0.0

153554
type: SpeciesReference
stoichiometry: 1.0
species: 717171

153530
type: SpeciesReference
stoichiometry: 1.0
species: 717117

717117
type: Species
notes: FORMULA: C39H72O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-Diacyl-sn-glycerol (1-(9Z)-octadecenoyl,2-(11Z)-octadecenoyl, 18:1(9Z)/18:1(11Z))

153542
type: SpeciesReference
stoichiometry: 1.0
species: 719979

153566
type: SpeciesReference
stoichiometry: 1.0
species: 720450

720492
type: Species
notes: FORMULA: C24H28N8O9
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Tetrahydrofolyl-[Glu](2)

720144
type: Species
notes: FORMULA: HPO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Phosphate

720066
type: Species
notes: FORMULA: C3H2O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phosphoenolpyruvate

723612
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10405.t1 SUBSYSTEM: Methionine metabolism;Urea cycle and metabolism of amino groups
name: methylthioadenosine nucleosidase - adenosylhomocysteine nucleosidase
product: 175822
reactant: 175798
product: 175835
kinetic law: 175847
fast: false
reactant: 175810
reversible: false

175822
type: SpeciesReference
stoichiometry: 1.0
species: 718137

718137
type: Species
notes: FORMULA: C6H12O4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5-Methylthio-D-ribose

175798
type: SpeciesReference
stoichiometry: 1.0
species: 718125

175835
type: SpeciesReference
stoichiometry: 1.0
species: 718275

718275
type: Species
notes: FORMULA: C5H5N5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Adenine

733923
type: LocalParameter
value: 0.0

733921
type: LocalParameter
value: 0.0

733920
type: LocalParameter
value: 1000.0

733919
type: LocalParameter
value: 0.0

175810
type: SpeciesReference
stoichiometry: 1.0
species: 719424

722533
type: Reaction
reactant: 132763
reactant: 132788
name: AMP,sulfite:glutathione-disulfide oxidoreductase (adenosine-5'-phosphosulfate-forming), cytosol
product: 132824
fast: false
reactant: 132800
kinetic law: 132836
reactant: 132776
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3413.t1 SUBSYSTEM: Glutathione metabolism
product: 132812
reversible: true

132763
type: SpeciesReference
stoichiometry: 1.0
species: 718387

132788
type: SpeciesReference
stoichiometry: 1.0
species: 719394

132824
type: SpeciesReference
stoichiometry: 2.0
species: 719374

132800
type: SpeciesReference
stoichiometry: 1.0
species: 719530

719530
type: Species
notes: FORMULA: HSO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: HSO3-

730135
type: LocalParameter
value: 0.0

730133
type: LocalParameter
value: 0.0

730132
type: LocalParameter
value: 1000.0

730131
type: LocalParameter
value: -1000.0

132776
type: SpeciesReference
stoichiometry: 1.0
species: 719366

132812
type: SpeciesReference
stoichiometry: 1.0
species: 718417

724267
type: Reaction
fast: false
product: 214400
name: glucose-1-phosphate adenylyltransferase (chloroplast)
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4425.t1 and CRv4_Au5.s3.g10912.t1) SUBSYSTEM: Starch metabolism
reactant: 214376
product: 214412
reactant: 214388
kinetic law: 214424

214400
type: SpeciesReference
stoichiometry: 1.0
species: 718297

718297
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: ADPglucose

214376
type: SpeciesReference
stoichiometry: 1.0
species: 718501

214412
type: SpeciesReference
stoichiometry: 1.0
species: 720180

214388
type: SpeciesReference
stoichiometry: 1.0
species: 719190

719190
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: D-Glucose 1-phosphate

737416
type: LocalParameter
value: 0.0

737414
type: LocalParameter
value: 0.0

737413
type: LocalParameter
value: 1000.0

737411
type: LocalParameter
value: 0.0

723888
type: Reaction
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Propanoate metabolism
name: propanoyl-CoA:NADP+ 2-oxidoreductase, nucleus
reversible: true
reactant: 193521
product: 193557
product: 193533
product: 193545
reactant: 193509
kinetic law: 193569

193521
type: SpeciesReference
stoichiometry: 1.0
species: 720173

720173
type: Species
notes: FORMULA: C24H36N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Propanoyl-CoA

193557
type: SpeciesReference
stoichiometry: 1.0
species: 720225

720225
type: Species
notes: FORMULA: C24H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Propenoyl-CoA

193533
type: SpeciesReference
stoichiometry: 1.0
species: 719406

193545
type: SpeciesReference
stoichiometry: 1.0
species: 719838

719838
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Nicotinamide adenine dinucleotide phosphate - reduced

193509
type: SpeciesReference
stoichiometry: 1.0
species: 719826

719826
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Nicotinamide adenine dinucleotide phosphate

735262
type: LocalParameter
value: 0.0

735261
type: LocalParameter
value: 0.0

735259
type: LocalParameter
value: 1000.0

735258
type: LocalParameter
value: -1000.0

721651
type: Reaction
kinetic law: 102155
product: 102142
reactant: 102129
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, thylakoid lumen
fast: false
reversible: true
name: O2 transport (diffusion), Thylakoid Lumen

727565
type: LocalParameter
value: 0.0

727564
type: LocalParameter
value: 0.0

727562
type: LocalParameter
value: 1000.0

727561
type: LocalParameter
value: -1000.0

102142
type: SpeciesReference
stoichiometry: 1.0
species: 719886

102129
type: SpeciesReference
stoichiometry: 1.0
species: 719882

722220
type: Reaction
reactant: 118258
product: 118270
product: 118282
reactant: 118246
reversible: false
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1425.t1 SUBSYSTEM: Drug metabolism - other enzymes
reactant: 118234
product: 118294
kinetic law: 118306
name: alpha-fluoro-beta-ureidopropionic acid amidohydrolase

118258
type: SpeciesReference
stoichiometry: 1.0
species: 719424

118270
type: SpeciesReference
stoichiometry: 1.0
species: 718301

718301
type: Species
notes: FORMULA: C3H6FNO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: alpha-Fluoro-beta-alanine

118282
type: SpeciesReference
stoichiometry: 1.0
species: 718655

118246
type: SpeciesReference
stoichiometry: 1.0
species: 719394

118234
type: SpeciesReference
stoichiometry: 1.0
species: 718303

718303
type: Species
notes: FORMULA: C4H7FN2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: alpha-Fluoro-beta-ureidopropionic acid

118294
type: SpeciesReference
stoichiometry: 1.0
species: 719847

729018
type: LocalParameter
value: 0.0

729016
type: LocalParameter
value: 0.0

729014
type: LocalParameter
value: 1000.0

729013
type: LocalParameter
value: 0.0

722536
type: Reaction
name: AMP,sulfite:glutathione-disulfide oxidoreductase (adenosine-5'-phosphosulfate-forming), mitochondria
kinetic law: 133004
fast: false
product: 132992
reactant: 132932
product: 132980
reactant: 132956
reactant: 132944
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3413.t1 SUBSYSTEM: Glutathione metabolism
reactant: 132968
reversible: true

730145
type: LocalParameter
value: 0.0

730143
type: LocalParameter
value: 0.0

730142
type: LocalParameter
value: 1000.0

730141
type: LocalParameter
value: -1000.0

132992
type: SpeciesReference
stoichiometry: 2.0
species: 719378

132932
type: SpeciesReference
stoichiometry: 1.0
species: 718391

132980
type: SpeciesReference
stoichiometry: 1.0
species: 718421

718421
type: Species
notes: FORMULA: C10H12N5O10PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Adenosine 5'-phosphosulfate

132956
type: SpeciesReference
stoichiometry: 1.0
species: 719404

132944
type: SpeciesReference
stoichiometry: 1.0
species: 719370

132968
type: SpeciesReference
stoichiometry: 1.0
species: 719536

719536
type: Species
notes: FORMULA: HSO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: HSO3-

722497
type: Reaction
reactant: 130830
product: 130867
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Galactose metabolism
kinetic law: 130879
product: 130854
fast: false
reactant: 130842
name: stachyose galactohydrolase
reversible: false

130830
type: SpeciesReference
stoichiometry: 1.0
species: 719430

130867
type: SpeciesReference
stoichiometry: 1.0
species: 720267

720267
type: Species
notes: FORMULA: C18H32O16
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Raffinose

730015
type: LocalParameter
value: 0.0

730013
type: LocalParameter
value: 0.0

730012
type: LocalParameter
value: 1000.0

730011
type: LocalParameter
value: 0.0

130854
type: SpeciesReference
stoichiometry: 1.0
species: 719214

130842
type: SpeciesReference
stoichiometry: 1.0
species: 720378

720378
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: stachyose

718741
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: trans-Dec-2-enoyl-CoA

721141
type: Reaction
product: 089052
reactant: 089015
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, extracellular
name: D-lactate transport out via proton symport
kinetic law: 089064
reversible: false
fast: false
reactant: 089028
product: 089040

089052
type: SpeciesReference
stoichiometry: 1.0
species: 719592

089015
type: SpeciesReference
stoichiometry: 1.0
species: 719394

726258
type: LocalParameter
value: 0.0

726256
type: LocalParameter
value: 0.0

726255
type: LocalParameter
value: 1000.0

726253
type: LocalParameter
value: 0.0

089028
type: SpeciesReference
stoichiometry: 1.0
species: 719591

719591
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-Lactate

089040
type: SpeciesReference
stoichiometry: 1.0
species: 719396

723713
type: Reaction
product: 181536
fast: false
reactant: 181500
reactant: 181512
name: prolyl 4-hydroxylase
reversible: false
reactant: 181524
kinetic law: 181572
product: 181560
product: 181548
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1265.t1 or CRv4_Au5.s10.g503.t1 or CRv4_Au5.s10.g832.t1 or CRv4_Au5.s11.g2702.t1 or CRv4_Au5.s2.g8491.t1 or CRv4_Au5.s3.g10359.t2 or CRv4_Au5.s3.g11339.t1 or CRv4_Au5.s5.g12237.t1 or CRv4_Au5.s8.g14848.t1) SUBSYSTEM: O-Glycan biosynthesis

181536
type: SpeciesReference
stoichiometry: 1.0
species: 718017

718017
type: Species
notes: FORMULA: C5H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: trans-4-Hydroxy-L-proline (protein-linked)

181500
type: SpeciesReference
stoichiometry: 1.0
species: 718329

181512
type: SpeciesReference
stoichiometry: 1.0
species: 719879

181524
type: SpeciesReference
stoichiometry: 1.0
species: 720215

734338
type: LocalParameter
value: 0.0

734336
type: LocalParameter
value: 0.0

734335
type: LocalParameter
value: 1000.0

734334
type: LocalParameter
value: 0.0

181560
type: SpeciesReference
stoichiometry: 1.0
species: 720384

720384
type: Species
notes: FORMULA: C4H4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Succinate

181548
type: SpeciesReference
stoichiometry: 1.0
species: 718655

722718
type: Reaction
reversible: false
reactant: 141043
reactant: 141055
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4734.t1 SUBSYSTEM: Glycerolipid metabolism
name: digalactosyldiacylglycerol synthase (18:1(9Z)/16:1(9Z))
product: 141079
fast: false
product: 141092
product: 141067
kinetic law: 141104

141043
type: SpeciesReference
stoichiometry: 1.0
species: 719714

141055
type: SpeciesReference
stoichiometry: 1.0
species: 720602

720602
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: UDP-galactose

141079
type: SpeciesReference
stoichiometry: 1.0
species: 719402

141092
type: SpeciesReference
stoichiometry: 1.0
species: 720587

141067
type: SpeciesReference
stoichiometry: 1.0
species: 718795

730759
type: LocalParameter
value: 0.0

730758
type: LocalParameter
value: 0.0

730757
type: LocalParameter
value: 1000.0

730755
type: LocalParameter
value: 0.0

719633
type: Species
notes: FORMULA: C18H29O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: gamma-linolenic acid

720381
type: Species
notes: FORMULA: C12H21O14P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: sucrose-6-phosphate

723368
type: Reaction
kinetic law: 167101
product: 167089
reactant: 167077
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1224.t1 or CRv4_Au5.s13.g5035.t2) SUBSYSTEM: Glycolysis / Gluconeogenesis
fast: false
reversible: true
name: phosphoglucomutase

733059
type: LocalParameter
value: 0.0

733057
type: LocalParameter
value: 0.0

733056
type: LocalParameter
value: 1000.0

733053
type: LocalParameter
value: -1000.0

167089
type: SpeciesReference
stoichiometry: 1.0
species: 719202

719202
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: alpha-D-glucose 6 phosphate

167077
type: SpeciesReference
stoichiometry: 1.0
species: 719188

719188
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-Glucose 1-phosphate

718675
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Coproporphyrin I

723742
type: Reaction
product: 183586
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4514.t1 or CRv4_Au5.s13.g4889.t1) SUBSYSTEM: Pantothenate and CoA biosynthesis
kinetic law: 183622
reactant: 183574
name: ATP:pantetheine 4'-phosphotransferase
reactant: 183562
product: 183610
fast: false
product: 183598

183586
type: SpeciesReference
stoichiometry: 1.0
species: 718287

734507
type: LocalParameter
value: 0.0

734506
type: LocalParameter
value: 0.0

734504
type: LocalParameter
value: 1000.0

734503
type: LocalParameter
value: 0.0

183574
type: SpeciesReference
stoichiometry: 1.0
species: 720239

720239
type: Species
notes: FORMULA: C11H21N2O4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Pantetheine

183562
type: SpeciesReference
stoichiometry: 1.0
species: 718497

183610
type: SpeciesReference
stoichiometry: 1.0
species: 720000

720000
type: Species
notes: FORMULA: C11H20N2O7PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Pantetheine 4'-phosphate

183598
type: SpeciesReference
stoichiometry: 1.0
species: 719394

717906
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Sulfino-L-alanine

723924
type: Reaction
kinetic law: 195938
product: 195926
reactant: 195914
reactant: 195902
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g4215.t1 or CRv4_Au5.s2.g8436.t1 or CRv4_Au5.s8.g15005.t1) SUBSYSTEM: Purine metabolism
fast: false
reversible: false
name: ATP:AMP phosphotransferase

735433
type: LocalParameter
value: 0.0

735432
type: LocalParameter
value: 0.0

735430
type: LocalParameter
value: 1000.0

735429
type: LocalParameter
value: 0.0

195926
type: SpeciesReference
stoichiometry: 2.0
species: 718287

195914
type: SpeciesReference
stoichiometry: 1.0
species: 718497

195902
type: SpeciesReference
stoichiometry: 1.0
species: 718387

718307
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Agmatine

722302
type: Reaction
reactant: 122127
kinetic law: 122188
product: 122163
name: fatty-acyl-ACP hydrolase (n-C16:0)
reactant: 122139
reversible: false
product: 122151
fast: false
product: 122176
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s6.g12531.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s9.g15253.t1)) SUBSYSTEM: Fatty acid biosynthesis

122127
type: SpeciesReference
stoichiometry: 1.0
species: 719430

729326
type: LocalParameter
value: 0.0

729324
type: LocalParameter
value: 0.0

729323
type: LocalParameter
value: 1000.0

729321
type: LocalParameter
value: 0.0

122163
type: SpeciesReference
stoichiometry: 1.0
species: 719402

122139
type: SpeciesReference
stoichiometry: 1.0
species: 719999

719999
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Palmitoyl-ACP (n-C16:0ACP)

122151
type: SpeciesReference
stoichiometry: 1.0
species: 718257

122176
type: SpeciesReference
stoichiometry: 1.0
species: 719472

717975
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara(2-b1)Ara(2-a1)Gal(5-b1)Ara

721335
type: Reaction
kinetic law: 094439
product: 094427
reactant: 094415
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
fast: false
reversible: true
name: FADH2 transport, glyoxysome

726775
type: LocalParameter
value: 0.0

726774
type: LocalParameter
value: 0.0

726772
type: LocalParameter
value: 1000.0

726771
type: LocalParameter
value: -1000.0

094427
type: SpeciesReference
stoichiometry: 1.0
species: 719085

719085
type: Species
notes: FORMULA: C27H33N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Flavin adenine dinucleotide reduced

094415
type: SpeciesReference
stoichiometry: 1.0
species: 719079

717666
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Dehydroquinate

717639
type: Species
notes: FORMULA: C9H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-(4-Hydroxyphenyl)pyruvate

722091
type: Reaction
product: 114718
name: phytoene desaturase (1)
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3267.t1 SUBSYSTEM: Carotenoid biosynthesis
product: 114706
reactant: 114694
reactant: 114682
fast: false
reversible: true
kinetic law: 114730

114718
type: SpeciesReference
stoichiometry: 1.0
species: 720192

720192
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: reduced plastoquinone

114706
type: SpeciesReference
stoichiometry: 1.0
species: 720132

114694
type: SpeciesReference
stoichiometry: 1.0
species: 720189

720189
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: oxidized plastoquinone

114682
type: SpeciesReference
stoichiometry: 1.0
species: 720134

720134
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phytoene

728724
type: LocalParameter
value: 0.0

728722
type: LocalParameter
value: 0.0

728720
type: LocalParameter
value: 1000.0

728719
type: LocalParameter
value: -1000.0

719416
type: Species
notes: FORMULA: H2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: H2

719775
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Methylmalonate

724173
type: Reaction
product: 209597
name: 11-cis-retinol:NAD oxidoreductase
product: 209621
product: 209609
reversible: true
fast: false
reactant: 209585
reactant: 209573
notes: GENE_ASSOCIATION: SUBSYSTEM: Retinol metabolism
kinetic law: 209633

209597
type: SpeciesReference
stoichiometry: 1.0
species: 719408

209621
type: SpeciesReference
stoichiometry: 1.0
species: 720276

720276
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: 11-cis-Retinal

209609
type: SpeciesReference
stoichiometry: 1.0
species: 719817

719817
type: Species
notes: FORMULA: C21H27N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Nicotinamide adenine dinucleotide - reduced

209585
type: SpeciesReference
stoichiometry: 1.0
species: 720279

209573
type: SpeciesReference
stoichiometry: 1.0
species: 719808

719808
type: Species
notes: FORMULA: C21H26N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Nicotinamide adenine dinucleotide

737028
type: LocalParameter
value: 0.0

737026
type: LocalParameter
value: 0.0

737024
type: LocalParameter
value: 1000.0

737023
type: LocalParameter
value: -1000.0

723364
type: Reaction
fast: false
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1623.t1 or CRv4_Au5.s2.g9153.t1) SUBSYSTEM: Glycolysis / Gluconeogenesis
kinetic law: 166992
reactant: 166944
name: Glucokinase/hexokinase, chloroplast (glc-B)
reactant: 166932
product: 166980
product: 166968
product: 166956

733046
type: LocalParameter
value: 0.0

733044
type: LocalParameter
value: 0.0

733043
type: LocalParameter
value: 1000.0

733040
type: LocalParameter
value: 0.0

166944
type: SpeciesReference
stoichiometry: 1.0
species: 719264

166932
type: SpeciesReference
stoichiometry: 1.0
species: 718501

166980
type: SpeciesReference
stoichiometry: 1.0
species: 719402

166968
type: SpeciesReference
stoichiometry: 1.0
species: 719210

719210
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: beta-D-glucose 6-phosphate

166956
type: SpeciesReference
stoichiometry: 1.0
species: 718291

718913
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Dihydrolipolprotein

718605
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Chlorophyll a'

720093
type: Species
notes: FORMULA: C40H78O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Phosphatidylglycerophosphate (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

720672
type: Reaction
product: 073311
reversible: false
product: 073323
reactant: 073250
product: 073274
product: 073262
fast: false
kinetic law: 073359
notes: GENE_ASSOCIATION: SUBSYSTEM: Spectral decomposition
product: 073298
product: 073286
product: 073347
product: 073335
name: spectral decomposition of solar light measured from Earth's surface

073311
type: SpeciesReference
stoichiometry: 0.195814806722332
species: 720117

073323
type: SpeciesReference
stoichiometry: 0.18566429641716
species: 720119

073250
type: SpeciesReference
stoichiometry: 1.0
species: 720123

073274
type: SpeciesReference
stoichiometry: 0.088253056987783
species: 720113

073262
type: SpeciesReference
stoichiometry: 4.26984325300204E-5
species: 720111

724425
type: LocalParameter
value: 0.0

724424
type: LocalParameter
value: 0.0

724423
type: LocalParameter
value: 646.06656

724421
type: LocalParameter
value: 646.06656

073298
type: SpeciesReference
stoichiometry: 0.114958292879089
species: 720116

073286
type: SpeciesReference
stoichiometry: 0.187390761056649
species: 720114

073347
type: SpeciesReference
stoichiometry: 0.094404940130699
species: 720122

073335
type: SpeciesReference
stoichiometry: 0.08361649412414
species: 720120

724275
type: Reaction
reactant: 214798
reversible: false
kinetic law: 214858
product: 214822
product: 214846
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6482.t1 or CRv4_Au5.s16.g6481.t1 or CRv4_Au5.s10.g252.t1 or CRv4_Au5.s1.g1214.t1 or CRv4_Au5.s10.g284.t1 or CRv4_Au5.s1.g1215.t1 or CRv4_Au5.s4.g11800.t1 or CRv4_Au5.s4.g11810.t1 or CRv4_Au5.s4.g11811.t1 or CRv4_Au5.s5.g12141.t1 or CRv4_Au5.s5.g12144.t1 or CRv4_Au5.s6.g13273.t1 or CRv4_Au5.s7.g14008.t1) SUBSYSTEM: Sulfur metabolism
name: aryl-sulfate sulfohydrolase
product: 214834
fast: false
reactant: 214810

214798
type: SpeciesReference
stoichiometry: 1.0
species: 718437

718437
type: Species
notes: FORMULA: C6H6O4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Aryl sulfate

737449
type: LocalParameter
value: 0.0

737447
type: LocalParameter
value: 0.0

737446
type: LocalParameter
value: 1000.0

737444
type: LocalParameter
value: 0.0

214822
type: SpeciesReference
stoichiometry: 2.0
species: 719394

214846
type: SpeciesReference
stoichiometry: 1.0
species: 720345

214834
type: SpeciesReference
stoichiometry: 1.0
species: 720105

720105
type: Species
notes: FORMULA: C6H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Phenol

214810
type: SpeciesReference
stoichiometry: 1.0
species: 719424

723896
type: Reaction
product: 194148
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6603.t1 SUBSYSTEM: Purine metabolism
reactant: 194123
reversible: false
kinetic law: 194173
product: 194136
product: 194161
name: ATP:adenylylsulfate 3'-phosphotransferase, chloroplast
reactant: 194111
fast: false

194148
type: SpeciesReference
stoichiometry: 1.0
species: 719402

194123
type: SpeciesReference
stoichiometry: 1.0
species: 718501

735302
type: LocalParameter
value: 0.0

735301
type: LocalParameter
value: 0.0

735299
type: LocalParameter
value: 1000.0

735298
type: LocalParameter
value: 0.0

194136
type: SpeciesReference
stoichiometry: 1.0
species: 718291

194161
type: SpeciesReference
stoichiometry: 1.0
species: 720011

720011
type: Species
notes: FORMULA: C10H11N5O13P2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3'-Phosphoadenylyl sulfate

194111
type: SpeciesReference
stoichiometry: 1.0
species: 718419

718419
type: Species
notes: FORMULA: C10H12N5O10PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Adenosine 5'-phosphosulfate

719524
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Tetrahydropteroyltri-L-glutamate

719129
type: Species
notes: FORMULA: C8H12N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide

721545
type: Reaction
kinetic law: 099588
product: 099576
reactant: 099564
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: propanoate transport, mitochondria

727300
type: LocalParameter
value: 0.0

727299
type: LocalParameter
value: 0.0

727297
type: LocalParameter
value: 1000.0

727296
type: LocalParameter
value: -1000.0

099576
type: SpeciesReference
stoichiometry: 1.0
species: 720161

099564
type: SpeciesReference
stoichiometry: 1.0
species: 720158

720736
type: Reaction
kinetic law: 075000
reactant: 074988
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: acetamide exchange

724696
type: LocalParameter
value: 0.0

724693
type: LocalParameter
value: 0.0

724690
type: LocalParameter
value: 0.0

724687
type: LocalParameter
value: 0.0

074988
type: SpeciesReference
stoichiometry: 1.0
species: 718273

721331
type: Reaction
product: 094343
reactant: 094319
fast: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1788.t1 or CRv4_Au5.s7.g14019.t1) SUBSYSTEM: Transport, glyoxysome
product: 094355
reversible: true
reactant: 094331
name: Amino acid transporter (ala-L), glyoxysomal
kinetic law: 094367

094343
type: SpeciesReference
stoichiometry: 1.0
species: 718349

718349
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: L-Alanine

094319
type: SpeciesReference
stoichiometry: 1.0
species: 718345

094355
type: SpeciesReference
stoichiometry: 1.0
species: 719412

094331
type: SpeciesReference
stoichiometry: 1.0
species: 719394

726765
type: LocalParameter
value: 0.0

726764
type: LocalParameter
value: 0.0

726762
type: LocalParameter
value: 1000.0

726761
type: LocalParameter
value: -1000.0

723567
type: Reaction
reactant: 173623
name: dihydrodipicolinate synthase
product: 173659
reactant: 173611
reversible: false
product: 173635
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8946.t1 SUBSYSTEM: Lysine biosynthesis
kinetic law: 173671
product: 173647
fast: false

173623
type: SpeciesReference
stoichiometry: 1.0
species: 720249

720249
type: Species
notes: FORMULA: C3H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Pyruvate

173659
type: SpeciesReference
stoichiometry: 2.0
species: 719424

173611
type: SpeciesReference
stoichiometry: 1.0
species: 718475

718475
type: Species
notes: FORMULA: C4H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Aspartate 4-semialdehyde

173635
type: SpeciesReference
stoichiometry: 1.0
species: 717183

717183
type: Species
notes: FORMULA: C7H5NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2,3-Dihydrodipicolinate

733747
type: LocalParameter
value: 0.0

733746
type: LocalParameter
value: 0.0

733743
type: LocalParameter
value: 1000.0

733742
type: LocalParameter
value: 0.0

173647
type: SpeciesReference
stoichiometry: 1.0
species: 719394

723449
type: Reaction
product: 169508
reactant: 169484
fast: false
name: Phosphoglycolate phosphatase, glyoxysomal
reactant: 169496
product: 169520
kinetic law: 169532
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10524.t1 SUBSYSTEM: Glyoxylate metabolism
reversible: false

169508
type: SpeciesReference
stoichiometry: 1.0
species: 719342

719342
type: Species
notes: FORMULA: C2H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Glycolate

169484
type: SpeciesReference
stoichiometry: 1.0
species: 717636

717636
type: Species
notes: FORMULA: C2H2O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: 2-Phosphoglycolate

169496
type: SpeciesReference
stoichiometry: 1.0
species: 719440

169520
type: SpeciesReference
stoichiometry: 1.0
species: 720146

720146
type: Species
notes: FORMULA: HPO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Phosphate

733325
type: LocalParameter
value: 0.0

733324
type: LocalParameter
value: 0.0

733321
type: LocalParameter
value: 1000.0

733320
type: LocalParameter
value: 0.0

717193
type: Species
notes: FORMULA: C6H11O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-2,3-Dihydroxy-3-methylpentanoate

719745
type: Species
notes: FORMULA: C6H8O18P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: 1D-myo-Inositol 1,3,4,5-tetrakisphosphate

724229
type: Reaction
reactant: 212499
product: 212535
kinetic law: 212571
name: selenocysteine---tRNA ligase
fast: false
reactant: 212523
product: 212559
product: 212547
reactant: 212511
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8460.t1 or CRv4_Au5.s3.g10935.t1) SUBSYSTEM: Selenoamino acid metabolism

212499
type: SpeciesReference
stoichiometry: 1.0
species: 718503

212535
type: SpeciesReference
stoichiometry: 1.0
species: 718391

737262
type: LocalParameter
value: 0.0

737260
type: LocalParameter
value: 0.0

737259
type: LocalParameter
value: 1000.0

737257
type: LocalParameter
value: 0.0

212523
type: SpeciesReference
stoichiometry: 1.0
species: 720548

212559
type: SpeciesReference
stoichiometry: 1.0
species: 720339

720339
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Seryl-tRNA(Sec)

212547
type: SpeciesReference
stoichiometry: 1.0
species: 720182

212511
type: SpeciesReference
stoichiometry: 1.0
species: 720336

720883
type: Reaction
kinetic law: 082929
product: 082917
reactant: 082905
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: 2,3-Dihydroxy-3-methylbutanoate transport, chloroplast

725282
type: LocalParameter
value: 0.0

725279
type: LocalParameter
value: 0.0

725276
type: LocalParameter
value: 1000.0

725275
type: LocalParameter
value: -1000.0

082917
type: SpeciesReference
stoichiometry: 1.0
species: 717187

717187
type: Species
notes: FORMULA: C5H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-2,3-Dihydroxy-3-methylbutanoate

082905
type: SpeciesReference
stoichiometry: 1.0
species: 717185

722907
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reversible: false
reactant: 151422
name: phospholipid: diacylglycerol acyltransferase (18:1(9Z))
product: 151434
fast: false
kinetic law: 151458
product: 151446
reactant: 151410

151422
type: SpeciesReference
stoichiometry: 1.0
species: 719946

151434
type: SpeciesReference
stoichiometry: 1.0
species: 717163

731409
type: LocalParameter
value: 0.0

731407
type: LocalParameter
value: 0.0

731405
type: LocalParameter
value: 1000.0

731403
type: LocalParameter
value: 0.0

151446
type: SpeciesReference
stoichiometry: 1.0
species: 720416

151410
type: SpeciesReference
stoichiometry: 1.0
species: 717097

723130
type: Reaction
reversible: false
product: 158770
reactant: 158746
kinetic law: 158794
fast: false
product: 158782
name: 1-acylglycerophosphoethanolamine O-acyltransferase (18:1(11Z)/18:1(9Z))
notes: GENE_ASSOCIATION: (CRv4_Au5.s17.g7191.t1 or CRv4_Au5.s3.g10800.t1 or CRv4_Au5.s65.g13657.t1) SUBSYSTEM: Glycerophospholipid metabolism
reactant: 158758

158770
type: SpeciesReference
stoichiometry: 1.0
species: 718665

158746
type: SpeciesReference
stoichiometry: 1.0
species: 717151

717151
type: Species
notes: FORMULA: C23H46NO7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-Acyl-sn-glycero-3-phosphoethanolamine (18:1(11Z))

732226
type: LocalParameter
value: 0.0

732223
type: LocalParameter
value: 0.0

732221
type: LocalParameter
value: 1000.0

732220
type: LocalParameter
value: 0.0

158782
type: SpeciesReference
stoichiometry: 1.0
species: 720036

158758
type: SpeciesReference
stoichiometry: 1.0
species: 719916

722751
type: Reaction
product: 143310
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1717.t1 or CRv4_Au5.s1.g1718.t1 or CRv4_Au5.s1.g1719.t1 or CRv4_Au5.s13.g4871.t1 or CRv4_Au5.s17.g7267.t1) SUBSYSTEM: Glycerolipid metabolism
reactant: 143298
reversible: false
reactant: 143286
product: 143334
reactant: 143274
fast: false
product: 143322
kinetic law: 143346
name: linoleate desaturase (16:0/18:4(5Z,9Z,12Z,15Z))

143310
type: SpeciesReference
stoichiometry: 1.0
species: 718857

143298
type: SpeciesReference
stoichiometry: 1.0
species: 719879

143286
type: SpeciesReference
stoichiometry: 2.0
species: 719811

143334
type: SpeciesReference
stoichiometry: 2.0
species: 719801

143274
type: SpeciesReference
stoichiometry: 1.0
species: 718855

143322
type: SpeciesReference
stoichiometry: 2.0
species: 719424

730869
type: LocalParameter
value: 0.0

730868
type: LocalParameter
value: 0.0

730867
type: LocalParameter
value: 1000.0

730865
type: LocalParameter
value: 0.0

722939
type: Reaction
fast: false
product: 152409
reversible: false
reactant: 152384
kinetic law: 152433
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reactant: 152397
product: 152421
name: phospholipid: diacylglycerol acyltransferase (18:1(11Z))

152409
type: SpeciesReference
stoichiometry: 1.0
species: 717167

152384
type: SpeciesReference
stoichiometry: 1.0
species: 717107

731521
type: LocalParameter
value: 0.0

731519
type: LocalParameter
value: 0.0

731517
type: LocalParameter
value: 1000.0

731515
type: LocalParameter
value: 0.0

152397
type: SpeciesReference
stoichiometry: 1.0
species: 719960

152421
type: SpeciesReference
stoichiometry: 1.0
species: 720432

717113
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1,2-Diacyl-sn-glycerol (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

721828
type: Reaction
name: farnesyl pyrophosphate synthase, chloroplast
kinetic law: 108407
product: 108383
product: 108395
reactant: 108359
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g11293.t1 SUBSYSTEM: Biosynthesis of steroids
product: 108371
reversible: false
reactant: 108347
fast: false

728016
type: LocalParameter
value: 0.0

728015
type: LocalParameter
value: 0.0

728014
type: LocalParameter
value: 1000.0

728012
type: LocalParameter
value: 0.0

108383
type: SpeciesReference
stoichiometry: 1.0
species: 719402

108395
type: SpeciesReference
stoichiometry: 1.0
species: 720180

108359
type: SpeciesReference
stoichiometry: 1.0
species: 719585

719585
type: Species
notes: FORMULA: C5H9O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Isopentenyl diphosphate

108371
type: SpeciesReference
stoichiometry: 1.0
species: 719170

719170
type: Species
notes: FORMULA: C15H25O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: trans,trans-Farnesyl diphosphate

108347
type: SpeciesReference
stoichiometry: 1.0
species: 719362

719362
type: Species
notes: FORMULA: C10H17O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Geranyl diphosphate

721431
type: Reaction
kinetic law: 096684
product: 096672
reactant: 096660
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: citrulline transport via diffusion, mitochondria

727015
type: LocalParameter
value: 0.0

727014
type: LocalParameter
value: 0.0

727012
type: LocalParameter
value: 1000.0

727011
type: LocalParameter
value: -1000.0

096672
type: SpeciesReference
stoichiometry: 1.0
species: 718645

718645
type: Species
notes: FORMULA: C6H14N3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Citrulline

096660
type: SpeciesReference
stoichiometry: 1.0
species: 718641

718641
type: Species
notes: FORMULA: C6H14N3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Citrulline

723818
type: Reaction
kinetic law: 188784
product: 188760
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g2348.t1 or CRv4_Au5.s3.g10345.t2) SUBSYSTEM: Polyamine metabolism
reactant: 188735
product: 188772
reactant: 188748
reversible: false
fast: false
name: ornithine decarboxylase, chloroplast

734912
type: LocalParameter
value: 0.0

734911
type: LocalParameter
value: 0.0

734909
type: LocalParameter
value: 1000.0

734908
type: LocalParameter
value: 0.0

188760
type: SpeciesReference
stoichiometry: 1.0
species: 718659

188735
type: SpeciesReference
stoichiometry: 1.0
species: 719402

188772
type: SpeciesReference
stoichiometry: 1.0
species: 720236

720236
type: Species
notes: FORMULA: C4H14N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Putrescine

188748
type: SpeciesReference
stoichiometry: 1.0
species: 719933

723964
type: Reaction
name: GMP synthase (glutamine-hydrolysing), mitochondria
reactant: 198356
product: 198404
kinetic law: 198453
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8657.t1 SUBSYSTEM: Purine metabolism
product: 198392
product: 198416
reactant: 198344
reactant: 198380
reactant: 198368
product: 198441
product: 198429
reversible: false
fast: false

198356
type: SpeciesReference
stoichiometry: 1.0
species: 719276

719276
type: Species
notes: FORMULA: C5H10N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Glutamine

198404
type: SpeciesReference
stoichiometry: 1.0
species: 719300

735644
type: LocalParameter
value: 0.0

735641
type: LocalParameter
value: 0.0

735638
type: LocalParameter
value: 1000.0

735635
type: LocalParameter
value: 0.0

198392
type: SpeciesReference
stoichiometry: 1.0
species: 718391

198416
type: SpeciesReference
stoichiometry: 1.0
species: 719356

198344
type: SpeciesReference
stoichiometry: 1.0
species: 718503

198380
type: SpeciesReference
stoichiometry: 1.0
species: 720657

198368
type: SpeciesReference
stoichiometry: 1.0
species: 719432

198441
type: SpeciesReference
stoichiometry: 1.0
species: 720182

198429
type: SpeciesReference
stoichiometry: 4.0
species: 719404

718477
type: Species
notes: FORMULA: C4H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Aspartate 4-semialdehyde

720531
type: Species
notes: FORMULA: C15H21N5O10PR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: tRNA(Glu)

721613
type: Reaction
kinetic law: 101275
product: 101263
reactant: 101251
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10596.t1 SUBSYSTEM: Transport, nucleus
fast: false
reversible: true
name: phosphate transport, nuclear

727470
type: LocalParameter
value: 0.0

727469
type: LocalParameter
value: 0.0

727467
type: LocalParameter
value: 1000.0

727466
type: LocalParameter
value: -1000.0

101263
type: SpeciesReference
stoichiometry: 1.0
species: 720144

101251
type: SpeciesReference
stoichiometry: 1.0
species: 720137

717243
type: Species
notes: FORMULA: C5H7O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2-Keto-4-methylthiobutyric acid

723892
type: Reaction
reactant: 193799
product: 193847
notes: GENE_ASSOCIATION: CRv4_Au5.s23.g9903.t1 SUBSYSTEM: Propanoate metabolism
reversible: false
product: 193859
product: 193835
reactant: 193823
fast: false
kinetic law: 193883
reactant: 193811
product: 193871
name: Propanoate:CoA ligase (AMP-forming), chloroplast

193799
type: SpeciesReference
stoichiometry: 1.0
species: 718501

193847
type: SpeciesReference
stoichiometry: 1.0
species: 719402

193859
type: SpeciesReference
stoichiometry: 1.0
species: 720170

193835
type: SpeciesReference
stoichiometry: 1.0
species: 718389

193823
type: SpeciesReference
stoichiometry: 1.0
species: 720159

735282
type: LocalParameter
value: 0.0

735281
type: LocalParameter
value: 0.0

735279
type: LocalParameter
value: 1000.0

735278
type: LocalParameter
value: 0.0

193811
type: SpeciesReference
stoichiometry: 1.0
species: 718667

193871
type: SpeciesReference
stoichiometry: 1.0
species: 720180

719354
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: GMP

721857
type: Reaction
kinetic law: 109196
product: 109172
reactant: 109111
product: 109160
reversible: true
reactant: 109123
product: 109148
reactant: 109136
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8646.t1 SUBSYSTEM: Biosynthesis of steroids
product: 109184
name: lanosterol,NADPH:oxygen oxidoreductase (14-methyl cleaving)
reactant: 109099
fast: false

728126
type: LocalParameter
value: 0.0

728123
type: LocalParameter
value: 0.0

728120
type: LocalParameter
value: 1000.0

728117
type: LocalParameter
value: -1000.0

109172
type: SpeciesReference
stoichiometry: 4.0
species: 719424

109111
type: SpeciesReference
stoichiometry: 1.0
species: 719601

719601
type: Species
notes: FORMULA: C30H50O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Lanosterol

109160
type: SpeciesReference
stoichiometry: 1.0
species: 719152

109123
type: SpeciesReference
stoichiometry: 3.0
species: 719832

109148
type: SpeciesReference
stoichiometry: 1.0
species: 717924

717924
type: Species
notes: FORMULA: C29H46O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 4,4-Dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol

109136
type: SpeciesReference
stoichiometry: 3.0
species: 719879

109184
type: SpeciesReference
stoichiometry: 3.0
species: 719820

109099
type: SpeciesReference
stoichiometry: 2.0
species: 719394

718429
type: Species
notes: FORMULA: C6H15N4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: L-Arginine

717789
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: S-(3-Methylbutanoyl)-dihydrolipoamide

720090
type: Species
notes: FORMULA: C40H78O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Phosphatidylglycerophosphate (1-(11Z)-octadecenoyl,2-hexadecanoyl, 18:1(11Z)/16:0)

719456
type: Species
notes: FORMULA: HCO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Bicarbonate

719148
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Ferrocytochrome c

723563
type: Reaction
name: LL-diaminopimelate aminotransferase
notes: GENE_ASSOCIATION: CRv4_Au5.s17.g7728.t1 SUBSYSTEM: Lysine biosynthesis
reactant: 173455
reversible: true
fast: false
reactant: 173431
reactant: 173467
kinetic law: 173503
product: 173479
product: 173491
reactant: 173443

173455
type: SpeciesReference
stoichiometry: 1.0
species: 719424

173431
type: SpeciesReference
stoichiometry: 1.0
species: 719296

173467
type: SpeciesReference
stoichiometry: 1.0
species: 720485

720485
type: Species
notes: FORMULA: C7H7NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2,3,4,5-Tetrahydrodipicolinate

733727
type: LocalParameter
value: 0.0

733725
type: LocalParameter
value: 0.0

733724
type: LocalParameter
value: 1000.0

733723
type: LocalParameter
value: -1000.0

173479
type: SpeciesReference
stoichiometry: 1.0
species: 717205

717205
type: Species
notes: FORMULA: C7H14N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: LL-2,6-Diaminoheptanedioate

173491
type: SpeciesReference
stoichiometry: 1.0
species: 718329

173443
type: SpeciesReference
stoichiometry: 1.0
species: 719394

723879
type: Reaction
kinetic law: 193005
reactant: 192944
fast: false
reactant: 192957
notes: GENE_ASSOCIATION: SUBSYSTEM: Propanoate metabolism
name: 3-hydroxypropionyl-CoA:NADP+ oxidoreductase
product: 192981
product: 192993
reactant: 192969
reversible: true

735217
type: LocalParameter
value: 0.0

735216
type: LocalParameter
value: 0.0

735214
type: LocalParameter
value: 1000.0

735213
type: LocalParameter
value: -1000.0

192944
type: SpeciesReference
stoichiometry: 1.0
species: 717876

192957
type: SpeciesReference
stoichiometry: 1.0
species: 719394

192981
type: SpeciesReference
stoichiometry: 1.0
species: 717768

717768
type: Species
notes: FORMULA: C24H36N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-Hydroxypropionyl-CoA

192993
type: SpeciesReference
stoichiometry: 1.0
species: 719820

192969
type: SpeciesReference
stoichiometry: 1.0
species: 719832

718251
type: Species
notes: FORMULA: C7H14N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N2-Acetyl-L-ornithine

719630
type: Species
notes: FORMULA: C18H29O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: alpha-Linolenic acid, C18:3, n-3

724139
type: Reaction
product: 207847
reversible: false
name: aldehyde dehydrogenase (acetaldehyde, NAD)
kinetic law: 207883
product: 207871
reactant: 207835
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3076.t1 SUBSYSTEM: Pyruvate metabolism
reactant: 207811
fast: false
reactant: 207823
product: 207859

207847
type: SpeciesReference
stoichiometry: 1.0
species: 718185

736826
type: LocalParameter
value: 0.0

736823
type: LocalParameter
value: 0.0

736820
type: LocalParameter
value: 1000.0

736819
type: LocalParameter
value: 0.0

207871
type: SpeciesReference
stoichiometry: 1.0
species: 719811

207835
type: SpeciesReference
stoichiometry: 1.0
species: 719801

207811
type: SpeciesReference
stoichiometry: 1.0
species: 718212

207823
type: SpeciesReference
stoichiometry: 1.0
species: 719424

207859
type: SpeciesReference
stoichiometry: 2.0
species: 719394

722199
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s9.g15260.t1 SUBSYSTEM: Drug metabolism - cytochrome P450
reactant: 117392
product: 117428
name: demethylcitalopram:oxygen oxidoreductase (deaminating)
reversible: false
reactant: 117404
fast: false
reactant: 117380
product: 117416
kinetic law: 117453
product: 117441

117392
type: SpeciesReference
stoichiometry: 1.0
species: 719424

117428
type: SpeciesReference
stoichiometry: 1.0
species: 719442

117404
type: SpeciesReference
stoichiometry: 1.0
species: 719879

117380
type: SpeciesReference
stoichiometry: 1.0
species: 718935

718935
type: Species
notes: FORMULA: C19H20FN2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Demethylcitalopram

117416
type: SpeciesReference
stoichiometry: 1.0
species: 718635

728952
type: LocalParameter
value: 0.0

728950
type: LocalParameter
value: 0.0

728948
type: LocalParameter
value: 1000.0

728947
type: LocalParameter
value: 0.0

117441
type: SpeciesReference
stoichiometry: 1.0
species: 719777

719777
type: Species
notes: FORMULA: CH6N
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Methylamine

719089
type: Species
notes: FORMULA: C6H10O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: beta-D-Fructose 1,6-bisphosphate

720552
type: Species
notes: FORMULA: C10H17O10PR2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: tRNA(Thr)

724181
type: Reaction
reactant: 209958
name: acetyl-CoA:retinol O-acyltransferase
kinetic law: 209994
product: 209982
product: 209970
reversible: false
reactant: 209946
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1886.t1 or CRv4_Au5.s12.g4218.t1 or CRv4_Au5.s3.g11242.t1) SUBSYSTEM: Retinol metabolism
fast: false

209958
type: SpeciesReference
stoichiometry: 1.0
species: 720278

737064
type: LocalParameter
value: 0.0

737062
type: LocalParameter
value: 0.0

737060
type: LocalParameter
value: 1000.0

737059
type: LocalParameter
value: 0.0

209982
type: SpeciesReference
stoichiometry: 1.0
species: 720272

209970
type: SpeciesReference
stoichiometry: 1.0
species: 718671

209946
type: SpeciesReference
stoichiometry: 1.0
species: 718231

718231
type: Species
notes: FORMULA: C23H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Acetyl-CoA

719939
type: Species
notes: FORMULA: C10H10N2O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Orotidine 5'-phosphate

720935
type: Reaction
kinetic law: 084125
product: 084113
reactant: 084101
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: false
name: CO2 chloroplast transport

725490
type: LocalParameter
value: 0.0

725487
type: LocalParameter
value: 0.0

725484
type: LocalParameter
value: 1000.0

725483
type: LocalParameter
value: 0.0

084113
type: SpeciesReference
stoichiometry: 1.0
species: 718659

084101
type: SpeciesReference
stoichiometry: 1.0
species: 718655

720817
type: Reaction
kinetic law: 075693
product: 075681
reactant: 075669
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6473.t1 or CRv4_Au5.s16.g6082.t1) SUBSYSTEM: Cofactor recycling
fast: false
reversible: true
name: ferrocytochrome c recycle, chloroplast

724966
type: LocalParameter
value: 0.0

724963
type: LocalParameter
value: 0.0

724960
type: LocalParameter
value: 1000.0

724957
type: LocalParameter
value: -1000.0

075681
type: SpeciesReference
stoichiometry: 1.0
species: 719145

719145
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Ferrocytochrome c

075669
type: SpeciesReference
stoichiometry: 1.0
species: 719133

720125
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Pheophorbide a

719009
type: Species
notes: FORMULA: C9H11N2O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dUDP

724208
type: Reaction
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g13328.t1 SUBSYSTEM: Riboflavin metabolism
reactant: 211344
name: riboflavin synthase
product: 211380
reversible: false
product: 211368
reactant: 211356
kinetic law: 211392

211344
type: SpeciesReference
stoichiometry: 2.0
species: 718937

718937
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 6,7-Dimethyl-8-(1-D-ribityl)lumazine

211380
type: SpeciesReference
stoichiometry: 1.0
species: 720290

720290
type: Species
notes: FORMULA: C17H19N4O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Riboflavin

211368
type: SpeciesReference
stoichiometry: 1.0
species: 718068

718068
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 4-(1-D-Ribitylamino)-5-aminouracil

211356
type: SpeciesReference
stoichiometry: 1.0
species: 719402

737174
type: LocalParameter
value: 0.0

737172
type: LocalParameter
value: 0.0

737171
type: LocalParameter
value: 1000.0

737169
type: LocalParameter
value: 0.0

721553
type: Reaction
product: 099781
reactant: 099757
fast: false
kinetic law: 099805
name: putrecine:proton symporter (irreversible), mitochondria
product: 099793
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g13244.t1 SUBSYSTEM: Transport, mitochondria
reactant: 099769

099781
type: SpeciesReference
stoichiometry: 1.0
species: 719404

099757
type: SpeciesReference
stoichiometry: 1.0
species: 719394

727320
type: LocalParameter
value: 0.0

727319
type: LocalParameter
value: 0.0

727317
type: LocalParameter
value: 1000.0

727316
type: LocalParameter
value: 0.0

099793
type: SpeciesReference
stoichiometry: 1.0
species: 720237

720237
type: Species
notes: FORMULA: C4H14N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Putrescine

099769
type: SpeciesReference
stoichiometry: 1.0
species: 720234

719564
type: Species
notes: FORMULA: C6H13NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Isoleucine

723960
type: Reaction
product: 198031
product: 198007
name: Guanosine 3'-diphosphate 5'-triphosphate 5'-phosphohydrolase
fast: false
kinetic law: 198044
product: 198019
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g376.t1 SUBSYSTEM: Purine metabolism
reactant: 197983
reversible: true
reactant: 197995

198031
type: SpeciesReference
stoichiometry: 1.0
species: 720174

720174
type: Species
notes: FORMULA: C10H11N5O17P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Guanosine 3',5'-bis(diphosphate)

198007
type: SpeciesReference
stoichiometry: 2.0
species: 719394

735608
type: LocalParameter
value: 0.0

735607
type: LocalParameter
value: 0.0

735605
type: LocalParameter
value: 1000.0

735604
type: LocalParameter
value: -1000.0

198019
type: SpeciesReference
stoichiometry: 1.0
species: 720137

197983
type: SpeciesReference
stoichiometry: 1.0
species: 719246

719246
type: Species
notes: FORMULA: C10H12N5O20P5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Guanosine 3'-diphosphate 5'-triphosphate

197995
type: SpeciesReference
stoichiometry: 1.0
species: 719424

721585
type: Reaction
reactant: 100696
name: Urea active transporter, mitochondrial
reversible: true
product: 100720
notes: GENE_ASSOCIATION: (CRv4_Au5.s17.g7115.t1 or CRv4_Au5.s8.g14669.t1 or CRv4_Au5.s8.g14670.t1) SUBSYSTEM: Transport, mitochondria
fast: false
reactant: 100684
kinetic law: 100732
product: 100708

100696
type: SpeciesReference
stoichiometry: 1.0
species: 720627

720627
type: Species
notes: FORMULA: CH5N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Urea

100720
type: SpeciesReference
stoichiometry: 1.0
species: 720630

720630
type: Species
notes: FORMULA: CH5N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Urea

100684
type: SpeciesReference
stoichiometry: 1.0
species: 719792

727400
type: LocalParameter
value: 0.0

727399
type: LocalParameter
value: 0.0

727397
type: LocalParameter
value: 1000.0

727396
type: LocalParameter
value: -1000.0

100708
type: SpeciesReference
stoichiometry: 1.0
species: 719796

723287
type: Reaction
reactant: 164477
name: glycine transaminase
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1073.t1 or CRv4_Au5.s10.g680.t1 or CRv4_Au5.s6.g13094.t1) SUBSYSTEM: Glycine, serine and threonine metabolism
kinetic law: 164513
reversible: false
reactant: 164465
fast: false
product: 164501
product: 164489

164477
type: SpeciesReference
stoichiometry: 1.0
species: 719310

719310
type: Species
notes: FORMULA: C2HO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Glyoxylate

732777
type: LocalParameter
value: 0.0

732774
type: LocalParameter
value: 0.0

732772
type: LocalParameter
value: 1000.0

732771
type: LocalParameter
value: 0.0

164465
type: SpeciesReference
stoichiometry: 1.0
species: 719300

164501
type: SpeciesReference
stoichiometry: 1.0
species: 719318

164489
type: SpeciesReference
stoichiometry: 1.0
species: 718333

720194
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: reduced plastoquinone

724269
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s3.g11038.t1 and (CRv4_Au5.s7.g14176.t1 or CRv4_Au5.s12.g4108.t1) and (CRv4_Au5.s11.g2607.t1 or CRv4_Au5.s19.g8150.t1) and (CRv4_Au5.s8.g15170.t1 or CRv4_Au5.s8.g14714.t1 or CRv4_Au5.s8.g15154.t1) and (CRv4_Au5.s6.g13538.t1 or CRv4_Au5.s6.g12805.t1)) SUBSYSTEM: Starch metabolism
reactant: 214532
reactant: 214508
name: degradation of starch300 by phosphorylase, amylase, dextrinase, maltase (chloroplast), 1:5 glc-B:g1p (dark-dep rxn)
reactant: 214520
fast: false
product: 214556
product: 214544
kinetic law: 214568

214532
type: SpeciesReference
stoichiometry: 1.0
species: 720377

214508
type: SpeciesReference
stoichiometry: 49.0
species: 719430

214520
type: SpeciesReference
stoichiometry: 250.0
species: 720141

214556
type: SpeciesReference
stoichiometry: 50.0
species: 719264

214544
type: SpeciesReference
stoichiometry: 250.0
species: 719190

737427
type: LocalParameter
value: 0.0

737425
type: LocalParameter
value: 0.0

737424
type: LocalParameter
value: 1000.0

737422
type: LocalParameter
value: 0.0

722499
type: Reaction
kinetic law: 130915
product: 130903
reactant: 130891
notes: GENE_ASSOCIATION: CRv4_Au5.s9.g15492.t1 SUBSYSTEM: Galactose metabolism
fast: false
reversible: true
name: UDP-glucose 4-epimerase

730020
type: LocalParameter
value: 0.0

730018
type: LocalParameter
value: 0.0

730017
type: LocalParameter
value: 1000.0

730016
type: LocalParameter
value: -1000.0

130903
type: SpeciesReference
stoichiometry: 1.0
species: 720599

130891
type: SpeciesReference
stoichiometry: 1.0
species: 720594

720594
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: UDP-glucose

724135
type: Reaction
fast: false
reactant: 207619
name: alcohol dehydrogenase (ethanol, NADP)
reversible: false
reactant: 207607
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9414.t1 SUBSYSTEM: Pyruvate metabolism
product: 207631
reactant: 207595
kinetic law: 207655
product: 207643

207619
type: SpeciesReference
stoichiometry: 1.0
species: 719832

207607
type: SpeciesReference
stoichiometry: 1.0
species: 719394

207631
type: SpeciesReference
stoichiometry: 1.0
species: 719051

719051
type: Species
notes: FORMULA: C2H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Ethanol

207595
type: SpeciesReference
stoichiometry: 1.0
species: 718212

736802
type: LocalParameter
value: 0.0

736799
type: LocalParameter
value: 0.0

736796
type: LocalParameter
value: 1000.0

736795
type: LocalParameter
value: 0.0

207643
type: SpeciesReference
stoichiometry: 1.0
species: 719820

722947
type: Reaction
name: phospholipid: diacylglycerol acyltransferase (18:1(9Z))
kinetic law: 152674
reversible: false
product: 152650
reactant: 152626
fast: false
reactant: 152638
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
product: 152662

731549
type: LocalParameter
value: 0.0

731547
type: LocalParameter
value: 0.0

731545
type: LocalParameter
value: 1000.0

731543
type: LocalParameter
value: 0.0

152650
type: SpeciesReference
stoichiometry: 1.0
species: 717167

152626
type: SpeciesReference
stoichiometry: 1.0
species: 717107

152638
type: SpeciesReference
stoichiometry: 1.0
species: 719961

152662
type: SpeciesReference
stoichiometry: 1.0
species: 720434

720177
type: Species
notes: FORMULA: C10H8O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Prephenate

723170
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9247.t1 SUBSYSTEM: Glycerophospholipid metabolism
product: 160134
product: 160121
name: glycerol-3-phosphate dehydrogenase [NAD(P)]
reactant: 160109
reversible: true
fast: false
reactant: 160085
reactant: 160097
kinetic law: 160146

160134
type: SpeciesReference
stoichiometry: 1.0
species: 719823

160121
type: SpeciesReference
stoichiometry: 1.0
species: 719332

160109
type: SpeciesReference
stoichiometry: 1.0
species: 719835

160085
type: SpeciesReference
stoichiometry: 1.0
species: 718901

718901
type: Species
notes: FORMULA: C3H5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Dihydroxyacetone phosphate

160097
type: SpeciesReference
stoichiometry: 1.0
species: 719402

732362
type: LocalParameter
value: 0.0

732359
type: LocalParameter
value: 0.0

732357
type: LocalParameter
value: 1000.0

732356
type: LocalParameter
value: -1000.0

718701
type: Species
notes: FORMULA: C3H7NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Cysteine

719828
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Nicotinamide adenine dinucleotide phosphate

719867
type: Species
notes: FORMULA: NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Nitrite

721325
type: Reaction
kinetic law: 094210
product: 094198
reactant: 094186
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
fast: false
reversible: true
name: Acetoacetate transport via diffusion, glyoxysome

726750
type: LocalParameter
value: 0.0

726749
type: LocalParameter
value: 0.0

726747
type: LocalParameter
value: 1000.0

726746
type: LocalParameter
value: -1000.0

094198
type: SpeciesReference
stoichiometry: 1.0
species: 718206

094186
type: SpeciesReference
stoichiometry: 1.0
species: 718200

718200
type: Species
notes: FORMULA: C4H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Acetoacetate

723858
type: Reaction
reactant: 191610
reversible: false
reactant: 191622
reactant: 191634
reactant: 191598
product: 191646
kinetic law: 191670
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1279.t1 SUBSYSTEM: Porphyrin and chlorophyll metabolism
fast: false
name: protochlorophyllide oxidoreductase (light-dependent, 648 nm)
product: 191658

191610
type: SpeciesReference
stoichiometry: 1.0
species: 719835

191622
type: SpeciesReference
stoichiometry: 1.0
species: 720018

720018
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Protochlorophyllide a

191634
type: SpeciesReference
stoichiometry: 1.0
species: 720119

191598
type: SpeciesReference
stoichiometry: 1.0
species: 719402

191646
type: SpeciesReference
stoichiometry: 1.0
species: 718609

735112
type: LocalParameter
value: 0.0

735111
type: LocalParameter
value: 0.0

735109
type: LocalParameter
value: 1000.0

735108
type: LocalParameter
value: 0.0

191658
type: SpeciesReference
stoichiometry: 1.0
species: 719823

721059
type: Reaction
reactant: 087076
product: 087100
reversible: true
fast: false
kinetic law: 087125
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g12600.t1 SUBSYSTEM: Transport, chloroplast
product: 087113
name: PAPS:PAP antiporter, chloroplast
reactant: 087088

087076
type: SpeciesReference
stoichiometry: 1.0
species: 720006

720006
type: Species
notes: FORMULA: C10H11N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Adenosine 3',5'-bisphosphate

087100
type: SpeciesReference
stoichiometry: 1.0
species: 720008

720008
type: Species
notes: FORMULA: C10H11N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Adenosine 3',5'-bisphosphate

725976
type: LocalParameter
value: 0.0

725975
type: LocalParameter
value: 0.0

725972
type: LocalParameter
value: 1000.0

725971
type: LocalParameter
value: -1000.0

087113
type: SpeciesReference
stoichiometry: 1.0
species: 720009

087088
type: SpeciesReference
stoichiometry: 1.0
species: 720011

721621
type: Reaction
kinetic law: 101480
product: 101468
reactant: 101456
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, thylakoid lumen
fast: false
reversible: true
name: alpha-carotene transport

727490
type: LocalParameter
value: 0.0

727489
type: LocalParameter
value: 0.0

727487
type: LocalParameter
value: 1000.0

727486
type: LocalParameter
value: -1000.0

101468
type: SpeciesReference
stoichiometry: 1.0
species: 718223

101456
type: SpeciesReference
stoichiometry: 1.0
species: 718221

718951
type: Species
notes: FORMULA: C21H24N6O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Deamino-NAD+

721507
type: Reaction
kinetic law: 098627
product: 098615
reactant: 098603
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: methionine transport, mitochondria

727205
type: LocalParameter
value: 0.0

727204
type: LocalParameter
value: 0.0

727202
type: LocalParameter
value: 1000.0

727201
type: LocalParameter
value: -1000.0

098615
type: SpeciesReference
stoichiometry: 1.0
species: 719699

719699
type: Species
notes: FORMULA: C5H11NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Methionine

098603
type: SpeciesReference
stoichiometry: 1.0
species: 719697

718643
type: Species
notes: FORMULA: C6H14N3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Citrulline

721983
type: Reaction
kinetic law: 112161
product: 112149
reactant: 112112
fast: false
name: 3-Hydroxybutanoyl-CoA:NAD+ oxidoreductase, mitochondria
product: 112125
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6952.t1 or CRv4_Au5.s3.g10962.t1) SUBSYSTEM: Butanoate metabolism
product: 112137
reactant: 112100

728503
type: LocalParameter
value: 0.0

728500
type: LocalParameter
value: 0.0

728497
type: LocalParameter
value: 1000.0

728496
type: LocalParameter
value: 0.0

112149
type: SpeciesReference
stoichiometry: 1.0
species: 719816

112112
type: SpeciesReference
stoichiometry: 1.0
species: 719805

112125
type: SpeciesReference
stoichiometry: 1.0
species: 718176

718176
type: Species
notes: FORMULA: C25H36N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Acetoacetyl-CoA

112137
type: SpeciesReference
stoichiometry: 1.0
species: 719404

112100
type: SpeciesReference
stoichiometry: 1.0
species: 717678

717678
type: Species
notes: FORMULA: C25H38N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-3-Hydroxybutanoyl-CoA

719958
type: Species
notes: FORMULA: C37H69O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1-(11Z)-octadecenoyl,2-hexadecanoyl-sn-glycerol 3-phosphate

724164
type: Reaction
product: 209186
reversible: false
fast: false
product: 209174
name: pyruvate carboxy-lyase (acetaldehyde-forming)
reactant: 209150
reactant: 209162
kinetic law: 209198
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10466.t1 SUBSYSTEM: Pyruvate metabolism

209186
type: SpeciesReference
stoichiometry: 1.0
species: 718661

209174
type: SpeciesReference
stoichiometry: 1.0
species: 718217

209150
type: SpeciesReference
stoichiometry: 1.0
species: 719404

209162
type: SpeciesReference
stoichiometry: 1.0
species: 720254

736978
type: LocalParameter
value: 0.0

736975
type: LocalParameter
value: 0.0

736972
type: LocalParameter
value: 1000.0

736971
type: LocalParameter
value: 0.0

720038
type: Species
notes: FORMULA: C41H78NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: phosphatidylethanolamine (18:1(11Z)/18:1(9Z))

723521
type: Reaction
product: 171993
reversible: false
reactant: 171957
notes: GENE_ASSOCIATION: CRv4_Au5.s4.g11857.t1 SUBSYSTEM: Inositol phosphate metabolism
product: 172005
name: inositol-pentakisphosphate 2-kinase
fast: false
kinetic law: 172017
reactant: 171969
reactant: 171981

171993
type: SpeciesReference
stoichiometry: 1.0
species: 718287

171957
type: SpeciesReference
stoichiometry: 1.0
species: 718497

172005
type: SpeciesReference
stoichiometry: 1.0
species: 719771

719771
type: Species
notes: FORMULA: C6H10O24P6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: myo-Inositol hexakisphosphate

733573
type: LocalParameter
value: 0.0

733572
type: LocalParameter
value: 0.0

733569
type: LocalParameter
value: 1000.0

733568
type: LocalParameter
value: 0.0

171969
type: SpeciesReference
stoichiometry: 1.0
species: 719394

171981
type: SpeciesReference
stoichiometry: 1.0
species: 719741

719741
type: Species
notes: FORMULA: C6H9O21P5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1D-myo-Inositol 1,3,4,5,6-pentakisphosphate

721581
type: Reaction
kinetic law: 100612
product: 100600
reactant: 100588
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: udp intracellular transport, mitochondria

727390
type: LocalParameter
value: 0.0

727389
type: LocalParameter
value: 0.0

727387
type: LocalParameter
value: 1000.0

727386
type: LocalParameter
value: -1000.0

100600
type: SpeciesReference
stoichiometry: 1.0
species: 720588

100588
type: SpeciesReference
stoichiometry: 1.0
species: 720584

722157
type: Reaction
kinetic law: 116306
reactant: 116258
reactant: 116270
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8757.t1 or CRv4_Au5.s2.g9246.t1) SUBSYSTEM: Cysteine metabolism
name: aspartate aminotransferase, cysteine forming
fast: false
product: 116282
reversible: false
product: 116294

728862
type: LocalParameter
value: 0.0

728860
type: LocalParameter
value: 0.0

728858
type: LocalParameter
value: 1000.0

728857
type: LocalParameter
value: 0.0

116258
type: SpeciesReference
stoichiometry: 1.0
species: 719300

116270
type: SpeciesReference
stoichiometry: 1.0
species: 719687

116282
type: SpeciesReference
stoichiometry: 1.0
species: 718333

116294
type: SpeciesReference
stoichiometry: 1.0
species: 718701

723887
type: Reaction
reactant: 193437
kinetic law: 193497
reversible: true
product: 193473
notes: GENE_ASSOCIATION: SUBSYSTEM: Propanoate metabolism
name: propanoyl-CoA:NADP+ 2-oxidoreductase
product: 193461
product: 193485
fast: false
reactant: 193449

193437
type: SpeciesReference
stoichiometry: 1.0
species: 719820

735257
type: LocalParameter
value: 0.0

735256
type: LocalParameter
value: 0.0

735254
type: LocalParameter
value: 1000.0

735253
type: LocalParameter
value: -1000.0

193473
type: SpeciesReference
stoichiometry: 1.0
species: 719832

193461
type: SpeciesReference
stoichiometry: 1.0
species: 719394

193485
type: SpeciesReference
stoichiometry: 1.0
species: 720222

720222
type: Species
notes: FORMULA: C24H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Propenoyl-CoA

193449
type: SpeciesReference
stoichiometry: 1.0
species: 720168

719651
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Lysine-tRNA (Lys)

718243
type: Species
notes: FORMULA: C8H14NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N-Acetyl-D-glucosamine 6-phosphate

719622
type: Species
notes: FORMULA: C14H23N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Lidocaine

722713
type: Reaction
product: 140886
reactant: 140850
reversible: false
reactant: 140862
kinetic law: 140898
fast: false
product: 140874
name: digalactosyl-diacylglycerol galactohydrolase (18:3(9Z,12Z,15Z)/16:3(7Z,10Z,13Z))
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1496.t1 SUBSYSTEM: Glycerolipid metabolism

140886
type: SpeciesReference
stoichiometry: 1.0
species: 719735

140850
type: SpeciesReference
stoichiometry: 1.0
species: 718821

140862
type: SpeciesReference
stoichiometry: 1.0
species: 719430

730744
type: LocalParameter
value: 0.0

730743
type: LocalParameter
value: 0.0

730742
type: LocalParameter
value: 1000.0

730740
type: LocalParameter
value: 0.0

140874
type: SpeciesReference
stoichiometry: 1.0
species: 719214

724265
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s4.g11868.t1 SUBSYSTEM: Starch and sucrose metabolism;Galactose metabolism
reversible: false
fast: false
reactant: 214327
product: 214339
name: UTP---glucose-1-phosphate uridylyltransferase
reactant: 214302
product: 214352
reactant: 214314
kinetic law: 214364

214327
type: SpeciesReference
stoichiometry: 1.0
species: 720633

214339
type: SpeciesReference
stoichiometry: 1.0
species: 720179

214302
type: SpeciesReference
stoichiometry: 1.0
species: 719188

214352
type: SpeciesReference
stoichiometry: 1.0
species: 720594

214314
type: SpeciesReference
stoichiometry: 1.0
species: 719394

737410
type: LocalParameter
value: 0.0

737409
type: LocalParameter
value: 0.0

737407
type: LocalParameter
value: 1000.0

737406
type: LocalParameter
value: 0.0

720943
type: Reaction
product: 084269
reactant: 084245
reversible: true
reactant: 084257
fast: false
kinetic law: 084293
product: 084281
notes: GENE_ASSOCIATION: (CRv4_Au5.s14.g5515.t1 or CRv4_Au5.s15.g5921.t1 or CRv4_Au5.s2.g8924.t1 or CRv4_Au5.s8.g14736.t1 or CRv4_Au5.s9.g15789.t1) SUBSYSTEM: Transport, chloroplast
name: Dihydroxyacetone phosphate transport via triose-phosphate translocator (from chloroplast)

084269
type: SpeciesReference
stoichiometry: 1.0
species: 718901

084245
type: SpeciesReference
stoichiometry: 1.0
species: 718897

718897
type: Species
notes: FORMULA: C3H5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dihydroxyacetone phosphate

084257
type: SpeciesReference
stoichiometry: 1.0
species: 720141

725522
type: LocalParameter
value: 0.0

725519
type: LocalParameter
value: 0.0

725516
type: LocalParameter
value: 1000.0

725515
type: LocalParameter
value: -1000.0

084281
type: SpeciesReference
stoichiometry: 1.0
species: 720137

723298
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g14327.t1 SUBSYSTEM: Glycine, serine and threonine metabolism
kinetic law: 164886
product: 164862
name: phosphoglycerate dehydrogenase
reactant: 164838
product: 164874
reactant: 164826
product: 164850
reversible: false
fast: false

732813
type: LocalParameter
value: 0.0

732810
type: LocalParameter
value: 0.0

732808
type: LocalParameter
value: 1000.0

732807
type: LocalParameter
value: 0.0

164862
type: SpeciesReference
stoichiometry: 1.0
species: 719402

164838
type: SpeciesReference
stoichiometry: 1.0
species: 719804

164874
type: SpeciesReference
stoichiometry: 1.0
species: 719814

164826
type: SpeciesReference
stoichiometry: 1.0
species: 717891

717891
type: Species
notes: FORMULA: C3H4O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Phospho-D-glycerate

164850
type: SpeciesReference
stoichiometry: 1.0
species: 717900

719035
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: N-Ethylglycine

722809
type: Reaction
reactant: 146478
reactant: 146454
name: monogalatcosyldiacylglycerol palmitate delta7-desaturase (18:1(9Z)/16:1(7Z))
reactant: 146442
product: 146527
product: 146490
reversible: false
product: 146514
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s9.g15418.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
fast: false
reactant: 146466
product: 146502
kinetic law: 146539

146478
type: SpeciesReference
stoichiometry: 1.0
species: 719882

146454
type: SpeciesReference
stoichiometry: 1.0
species: 719711

719711
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Monogalactosyldiacylglycerol (1-(9Z)-octadecenoyl,2-hexadecanoyl, 18:1(9Z)/16:0)

146442
type: SpeciesReference
stoichiometry: 1.0
species: 719099

146527
type: SpeciesReference
stoichiometry: 4.0
species: 719823

146490
type: SpeciesReference
stoichiometry: 1.0
species: 719107

146514
type: SpeciesReference
stoichiometry: 1.0
species: 719712

146466
type: SpeciesReference
stoichiometry: 4.0
species: 719835

146502
type: SpeciesReference
stoichiometry: 2.0
species: 719430

731065
type: LocalParameter
value: 0.0

731064
type: LocalParameter
value: 0.0

731063
type: LocalParameter
value: 1000.0

731061
type: LocalParameter
value: 0.0

718179
type: Species
notes: FORMULA: C25H36N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Acetoacetyl-CoA

724248
type: Reaction
kinetic law: 213509
product: 213497
reactant: 213485
reactant: 213473
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g11055.t1 SUBSYSTEM: Starch and sucrose metabolism
fast: false
reversible: false
name: alpha,alpha-trehalase (glc-B)

737339
type: LocalParameter
value: 0.0

737337
type: LocalParameter
value: 0.0

737336
type: LocalParameter
value: 1000.0

737334
type: LocalParameter
value: 0.0

213497
type: SpeciesReference
stoichiometry: 2.0
species: 719262

213485
type: SpeciesReference
stoichiometry: 1.0
species: 720518

213473
type: SpeciesReference
stoichiometry: 1.0
species: 719424

721055
type: Reaction
kinetic law: 087028
product: 087016
reactant: 087004
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g9015.t2 or CRv4_Au5.s9.g15392.t1 or CRv4_Au5.s9.g15690.t1) SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: nitrite transport, chloroplast

725962
type: LocalParameter
value: 0.0

725961
type: LocalParameter
value: 0.0

725958
type: LocalParameter
value: 1000.0

725957
type: LocalParameter
value: -1000.0

087016
type: SpeciesReference
stoichiometry: 1.0
species: 719870

087004
type: SpeciesReference
stoichiometry: 1.0
species: 719867

722742
type: Reaction
kinetic law: 142839
product: 142827
reactant: 142779
product: 142791
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
reactant: 142767
product: 142803
product: 142815
reactant: 142754
name: omega-6 desaturase (18:2(9Z,12Z)/16:3(7Z,10Z,13Z)) (DGDG)
reactant: 142742
reversible: false
fast: false

730839
type: LocalParameter
value: 0.0

730838
type: LocalParameter
value: 0.0

730837
type: LocalParameter
value: 1000.0

730835
type: LocalParameter
value: 0.0

142827
type: SpeciesReference
stoichiometry: 4.0
species: 719823

142779
type: SpeciesReference
stoichiometry: 1.0
species: 719882

142791
type: SpeciesReference
stoichiometry: 1.0
species: 718813

142767
type: SpeciesReference
stoichiometry: 4.0
species: 719835

142803
type: SpeciesReference
stoichiometry: 1.0
species: 719107

142815
type: SpeciesReference
stoichiometry: 2.0
species: 719430

142754
type: SpeciesReference
stoichiometry: 1.0
species: 719099

142742
type: SpeciesReference
stoichiometry: 1.0
species: 718801

717699
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-3-Hydroxydodecanoyl-CoA

718295
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: ADP

723801
type: Reaction
kinetic law: 187503
product: 187478
fast: false
reactant: 187466
name: tyrosine transaminase, mitochondria
reversible: true
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g2264.t1 or CRv4_Au5.s2.g8757.t1 or CRv4_Au5.s2.g9246.t1 or CRv4_Au5.s6.g12556.t1) SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis
reactant: 187454
product: 187490

734827
type: LocalParameter
value: 0.0

734826
type: LocalParameter
value: 0.0

734824
type: LocalParameter
value: 1000.0

734823
type: LocalParameter
value: -1000.0

187478
type: SpeciesReference
stoichiometry: 1.0
species: 718333

187466
type: SpeciesReference
stoichiometry: 1.0
species: 719300

187454
type: SpeciesReference
stoichiometry: 1.0
species: 717645

717645
type: Species
notes: FORMULA: C9H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-(4-Hydroxyphenyl)pyruvate

187490
type: SpeciesReference
stoichiometry: 1.0
species: 720576

720576
type: Species
notes: FORMULA: C9H11NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Tyrosine

723833
type: Reaction
product: 189752
reactant: 189716
reactant: 189704
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8511.t1 or CRv4_Au5.s2.g8651.t1) SUBSYSTEM: Porphyrin and chlorophyll metabolism
reversible: false
product: 189740
reactant: 189692
kinetic law: 189764
fast: false
product: 189728
name: coproporphyrinogen III oxidase (O2 required)

189752
type: SpeciesReference
stoichiometry: 1.0
species: 720188

720188
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Protoporphyrinogen IX

189716
type: SpeciesReference
stoichiometry: 2.0
species: 719882

189704
type: SpeciesReference
stoichiometry: 2.0
species: 719402

189740
type: SpeciesReference
stoichiometry: 2.0
species: 719444

719444
type: Species
notes: FORMULA: H2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Hydrogen peroxide

189692
type: SpeciesReference
stoichiometry: 1.0
species: 718681

718681
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Coproporphyrinogen III

734987
type: LocalParameter
value: 0.0

734986
type: LocalParameter
value: 0.0

734984
type: LocalParameter
value: 1000.0

734983
type: LocalParameter
value: 0.0

189728
type: SpeciesReference
stoichiometry: 2.0
species: 718659

720561
type: Species
notes: FORMULA: C11H12N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Tryptophan

717127
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1,3-Diaminopropane

723883
type: Reaction
reactant: 193173
product: 193209
kinetic law: 193233
notes: GENE_ASSOCIATION: SUBSYSTEM: Propanoate metabolism
fast: false
product: 193221
product: 193197
reactant: 193161
name: 3-oxopropionyl-CoA:NAD+ oxidoreductase
reversible: true
reactant: 193185

193173
type: SpeciesReference
stoichiometry: 1.0
species: 719660

719660
type: Species
notes: FORMULA: C24H34N7O19P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Malonyl-CoA

193209
type: SpeciesReference
stoichiometry: 1.0
species: 719424

735237
type: LocalParameter
value: 0.0

735236
type: LocalParameter
value: 0.0

735234
type: LocalParameter
value: 1000.0

735233
type: LocalParameter
value: -1000.0

193221
type: SpeciesReference
stoichiometry: 1.0
species: 719820

193197
type: SpeciesReference
stoichiometry: 1.0
species: 717876

193161
type: SpeciesReference
stoichiometry: 1.0
species: 719394

193185
type: SpeciesReference
stoichiometry: 1.0
species: 719832

718215
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Acetaldehyde

720699
type: Reaction
kinetic law: 074660
reactant: 074648
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Fe2+ exchange

724556
type: LocalParameter
value: 0.0

724553
type: LocalParameter
value: 0.0

724550
type: LocalParameter
value: 0.0

724547
type: LocalParameter
value: -10.0

074648
type: SpeciesReference
stoichiometry: 1.0
species: 719115

724143
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8757.t1 or CRv4_Au5.s2.g9246.t1) SUBSYSTEM: Pyruvate metabolism
product: 208076
product: 208088
name: aspartate aminotransferase
kinetic law: 208100
reactant: 208052
fast: false
reactant: 208064
reversible: true

208076
type: SpeciesReference
stoichiometry: 1.0
species: 719296

208088
type: SpeciesReference
stoichiometry: 1.0
species: 719891

736850
type: LocalParameter
value: 0.0

736847
type: LocalParameter
value: 0.0

736844
type: LocalParameter
value: 1000.0

736843
type: LocalParameter
value: -1000.0

208052
type: SpeciesReference
stoichiometry: 1.0
species: 718329

208064
type: SpeciesReference
stoichiometry: 1.0
species: 718467

723103
type: Reaction
name: triacylglycerol acylhydrolase (18:1(9Z)/18:1(9Z)/18:3(5Z,9Z,12Z))
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
reactant: 157864
product: 157889
kinetic law: 157925
reactant: 157876
fast: false
product: 157901
reversible: false
product: 157913

157864
type: SpeciesReference
stoichiometry: 1.0
species: 719424

157889
type: SpeciesReference
stoichiometry: 1.0
species: 717121

732140
type: LocalParameter
value: 0.0

732138
type: LocalParameter
value: 0.0

732136
type: LocalParameter
value: 1000.0

732133
type: LocalParameter
value: 0.0

157876
type: SpeciesReference
stoichiometry: 1.0
species: 720462

157901
type: SpeciesReference
stoichiometry: 1.0
species: 719394

157913
type: SpeciesReference
stoichiometry: 1.0
species: 719942

721333
type: Reaction
kinetic law: 094403
product: 094391
reactant: 094379
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, glyoxysome
fast: false
reversible: true
name: ethanol transport via diffusion, glyoxysome

726770
type: LocalParameter
value: 0.0

726769
type: LocalParameter
value: 0.0

726767
type: LocalParameter
value: 1000.0

726766
type: LocalParameter
value: -1000.0

094391
type: SpeciesReference
stoichiometry: 1.0
species: 719059

719059
type: Species
notes: FORMULA: C2H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Ethanol

094379
type: SpeciesReference
stoichiometry: 1.0
species: 719051

721515
type: Reaction
kinetic law: 098879
product: 098867
reactant: 098855
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6362.t1 SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: Voltage-sensitive Na+ channel, mitochondrial

727225
type: LocalParameter
value: 0.0

727224
type: LocalParameter
value: 0.0

727222
type: LocalParameter
value: 1000.0

727221
type: LocalParameter
value: -1000.0

098867
type: SpeciesReference
stoichiometry: 1.0
species: 719796

098855
type: SpeciesReference
stoichiometry: 1.0
species: 719792

723067
type: Reaction
name: triacylglycerol acylhydrolase (18:1(11Z)/18:1(11Z)/18:3(5Z,9Z,12Z))
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
product: 156628
product: 156640
reversible: false
reactant: 156604
product: 156652
reactant: 156616
kinetic law: 156664
fast: false

156628
type: SpeciesReference
stoichiometry: 1.0
species: 717107

156640
type: SpeciesReference
stoichiometry: 1.0
species: 719394

156604
type: SpeciesReference
stoichiometry: 1.0
species: 719424

156652
type: SpeciesReference
stoichiometry: 1.0
species: 719942

156616
type: SpeciesReference
stoichiometry: 1.0
species: 720435

732002
type: LocalParameter
value: 0.0

732000
type: LocalParameter
value: 0.0

731998
type: LocalParameter
value: 1000.0

731995
type: LocalParameter
value: 0.0

719172
type: Species
notes: FORMULA: C15H25O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: trans,trans-Farnesyl diphosphate

722238
type: Reaction
kinetic law: 118983
product: 118971
product: 118959
reactant: 118947
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g11300.t1)) SUBSYSTEM: Fatty acid biosynthesis
fast: false
reversible: true
name: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)

729089
type: LocalParameter
value: 0.0

729088
type: LocalParameter
value: 0.0

729086
type: LocalParameter
value: 1000.0

729085
type: LocalParameter
value: -1000.0

118971
type: SpeciesReference
stoichiometry: 1.0
species: 720507

720507
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: trans-Oct-2-enoyl-[acyl-carrier protein]

118959
type: SpeciesReference
stoichiometry: 1.0
species: 719430

118947
type: SpeciesReference
stoichiometry: 1.0
species: 717759

724172
type: Reaction
kinetic law: 209561
product: 209549
reactant: 209537
reactant: 209525
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8283.t1 SUBSYSTEM: Retinol metabolism
fast: false
reversible: false
name: beta-carotene 15,15'-monooxygenase

737022
type: LocalParameter
value: 0.0

737020
type: LocalParameter
value: 0.0

737018
type: LocalParameter
value: 1000.0

737017
type: LocalParameter
value: 0.0

209549
type: SpeciesReference
stoichiometry: 2.0
species: 720273

720273
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: all-trans-Retinal

209537
type: SpeciesReference
stoichiometry: 1.0
species: 719882

209525
type: SpeciesReference
stoichiometry: 1.0
species: 718565

718565
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: beta-Carotene

724244
type: Reaction
product: 213305
kinetic law: 213341
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3675.t1 SUBSYSTEM: Sphingolipid metabolism
reactant: 213281
product: 213317
reactant: 213293
fast: false
name: sphinganine kinase
product: 213329

213305
type: SpeciesReference
stoichiometry: 1.0
species: 718287

737322
type: LocalParameter
value: 0.0

737321
type: LocalParameter
value: 0.0

737319
type: LocalParameter
value: 1000.0

737318
type: LocalParameter
value: 0.0

213281
type: SpeciesReference
stoichiometry: 1.0
species: 718497

213317
type: SpeciesReference
stoichiometry: 1.0
species: 719394

213293
type: SpeciesReference
stoichiometry: 1.0
species: 720353

720353
type: Species
notes: FORMULA: C18H40NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sphinganine

213329
type: SpeciesReference
stoichiometry: 1.0
species: 720351

720351
type: Species
notes: FORMULA: C18H39NO5P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Sphinganine 1-phosphate

720099
type: Species
notes: FORMULA: C9H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Phenylalanine

719691
type: Species
notes: FORMULA: C20H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 5,10-Methenyltetrahydrofolate

722721
type: Reaction
reversible: false
product: 141297
product: 141309
product: 141273
product: 141285
fast: false
reactant: 141249
kinetic law: 141321
reactant: 141237
name: omega-3 desaturase (18:2(9Z,12Z)/16:3(7Z,10Z,13Z)) (DGDG)
reactant: 141261
reactant: 141225
notes: GENE_ASSOCIATION: ((CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism

141297
type: SpeciesReference
stoichiometry: 2.0
species: 719430

141309
type: SpeciesReference
stoichiometry: 4.0
species: 719823

141273
type: SpeciesReference
stoichiometry: 1.0
species: 718813

141285
type: SpeciesReference
stoichiometry: 1.0
species: 719107

141249
type: SpeciesReference
stoichiometry: 4.0
species: 719835

730769
type: LocalParameter
value: 0.0

730768
type: LocalParameter
value: 0.0

730767
type: LocalParameter
value: 1000.0

730765
type: LocalParameter
value: 0.0

141237
type: SpeciesReference
stoichiometry: 1.0
species: 719099

141261
type: SpeciesReference
stoichiometry: 1.0
species: 719882

141225
type: SpeciesReference
stoichiometry: 1.0
species: 718809

720781
type: Reaction
kinetic law: 075365
reactant: 075353
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Formate exchange

724846
type: LocalParameter
value: 0.0

724843
type: LocalParameter
value: 0.0

724840
type: LocalParameter
value: 1000.0

724837
type: LocalParameter
value: 0.0

075353
type: SpeciesReference
stoichiometry: 1.0
species: 719154

719154
type: Species
notes: FORMULA: CHO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Formate

724273
type: Reaction
product: 214750
reversible: false
notes: GENE_ASSOCIATION: ((CRv4_Au5.s6.g13196.t1 and CRv4_Au5.s12.g3500.t1) or (CRv4_Au5.s6.g13196.t1 and CRv4_Au5.s3.g10852.t1) or (CRv4_Au5.s6.g13196.t1 and CRv4_Au5.s16.g6375.t1) or (CRv4_Au5.s6.g13196.t1 and CRv4_Au5.s16.g6335.t1) or (CRv4_Au5.s6.g13196.t1 and CRv4_Au5.s6.g13040.t1) or (CRv4_Au5.s6.g12799.t1 and CRv4_Au5.s12.g3500.t1) or (CRv4_Au5.s6.g12799.t1 and CRv4_Au5.s3.g10852.t1) or (CRv4_Au5.s6.g12799.t1 and CRv4_Au5.s16.g6375.t1) or (CRv4_Au5.s6.g12799.t1 and CRv4_Au5.s16.g6335.t1) or (CRv4_Au5.s6.g12799.t1 and CRv4_Au5.s6.g13040.t1) or (CRv4_Au5.s10.g535.t1 and CRv4_Au5.s12.g3500.t1) or (CRv4_Au5.s10.g535.t1 and CRv4_Au5.s3.g10852.t1) or (CRv4_Au5.s10.g535.t1 and CRv4_Au5.s16.g6375.t1) or (CRv4_Au5.s10.g535.t1 and CRv4_Au5.s16.g6335.t1) or (CRv4_Au5.s10.g535.t1 and CRv4_Au5.s6.g13040.t1)) SUBSYSTEM: Starch metabolism
reactant: 214738
reactant: 214725
kinetic law: 214786
fast: false
name: starch synthase (300 glc units) (chloroplast)
product: 214774
product: 214762

214750
type: SpeciesReference
stoichiometry: 300.0
species: 718291

214738
type: SpeciesReference
stoichiometry: 1.0
species: 719430

214725
type: SpeciesReference
stoichiometry: 300.0
species: 718297

737443
type: LocalParameter
value: 0.0

737442
type: LocalParameter
value: 0.0

737440
type: LocalParameter
value: 1000.0

737439
type: LocalParameter
value: 0.0

214774
type: SpeciesReference
stoichiometry: 1.0
species: 720377

214762
type: SpeciesReference
stoichiometry: 300.0
species: 719402

723444
type: Reaction
kinetic law: 169352
product: 169340
product: 169328
reactant: 169316
notes: GENE_ASSOCIATION: (CRv4_Au5.s3.g11146.t1 or CRv4_Au5.s6.g13056.t1) SUBSYSTEM: Glyoxylate metabolism
fast: false
reversible: false
name: Isocitrate lyase

733306
type: LocalParameter
value: 0.0

733304
type: LocalParameter
value: 0.0

733303
type: LocalParameter
value: 1000.0

733300
type: LocalParameter
value: 0.0

169340
type: SpeciesReference
stoichiometry: 1.0
species: 720389

169328
type: SpeciesReference
stoichiometry: 1.0
species: 719310

169316
type: SpeciesReference
stoichiometry: 1.0
species: 719555

722635
type: Reaction
product: 137038
kinetic law: 137062
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g9504.t1 SUBSYSTEM: Glycerolipid metabolism
fast: false
product: 137050
reactant: 137014
reactant: 137026
name: 1-octadec-9-enoyl-sn-glycerol 3-phosphateO-acyltransferase (n-C16:0) (CoA substrate)
reversible: false

137038
type: SpeciesReference
stoichiometry: 1.0
species: 718665

730475
type: LocalParameter
value: 0.0

730473
type: LocalParameter
value: 0.0

730472
type: LocalParameter
value: 1000.0

730471
type: LocalParameter
value: 0.0

137050
type: SpeciesReference
stoichiometry: 1.0
species: 719969

137014
type: SpeciesReference
stoichiometry: 1.0
species: 717171

137026
type: SpeciesReference
stoichiometry: 1.0
species: 720147

723626
type: Reaction
reactant: 176424
notes: GENE_ASSOCIATION: SUBSYSTEM: N-Glycan biosynthesis
product: 176460
reversible: false
fast: false
kinetic law: 176484
name: dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase (doldpglcnacglcnacman(man(man)manman)manmanman)
product: 176472
product: 176448
reactant: 176436

176424
type: SpeciesReference
stoichiometry: 1.0
species: 718973

718973
type: Species
notes: FORMULA: C113H190N2O52P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man(3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man

176460
type: SpeciesReference
stoichiometry: 1.0
species: 718987

733969
type: LocalParameter
value: 0.0

733966
type: LocalParameter
value: 0.0

733965
type: LocalParameter
value: 1000.0

733964
type: LocalParameter
value: 0.0

176472
type: SpeciesReference
stoichiometry: 1.0
species: 719394

176448
type: SpeciesReference
stoichiometry: 1.0
species: 718971

718971
type: Species
notes: FORMULA: C119H200N2O57P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man[(6-a1)Man](3-a1)Man(2-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man

176436
type: SpeciesReference
stoichiometry: 1.0
species: 718985

718985
type: Species
notes: FORMULA: C61H102O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Dolichyl phosphate D-mannose

722817
type: Reaction
product: 146960
reversible: false
reactant: 146936
notes: GENE_ASSOCIATION: ((CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s1.g1737.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
name: omega-3 desaturase (18:2(9Z,12Z)/16:3(7Z,10Z,13Z)) (MGDG)
reactant: 146911
fast: false
kinetic law: 147008
reactant: 146948
reactant: 146924
product: 146996
product: 146984
product: 146972

146960
type: SpeciesReference
stoichiometry: 1.0
species: 719107

146936
type: SpeciesReference
stoichiometry: 4.0
species: 719835

146911
type: SpeciesReference
stoichiometry: 1.0
species: 719099

731093
type: LocalParameter
value: 0.0

731092
type: LocalParameter
value: 0.0

731091
type: LocalParameter
value: 1000.0

731088
type: LocalParameter
value: 0.0

146948
type: SpeciesReference
stoichiometry: 1.0
species: 719882

146924
type: SpeciesReference
stoichiometry: 1.0
species: 719724

146996
type: SpeciesReference
stoichiometry: 4.0
species: 719823

146984
type: SpeciesReference
stoichiometry: 1.0
species: 719727

146972
type: SpeciesReference
stoichiometry: 2.0
species: 719430

721013
type: Reaction
kinetic law: 085993
product: 085981
reactant: 085969
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: homogentisate transport

725800
type: LocalParameter
value: 0.0

725799
type: LocalParameter
value: 0.0

725796
type: LocalParameter
value: 1000.0

725795
type: LocalParameter
value: -1000.0

085981
type: SpeciesReference
stoichiometry: 1.0
species: 719494

719494
type: Species
notes: FORMULA: C8H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Homogentisate

085969
type: SpeciesReference
stoichiometry: 1.0
species: 719492

719492
type: Species
notes: FORMULA: C8H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Homogentisate

720760
type: Reaction
kinetic law: 075195
reactant: 075183
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: urate exchange

724776
type: LocalParameter
value: 0.0

724773
type: LocalParameter
value: 0.0

724770
type: LocalParameter
value: 0.0

724767
type: LocalParameter
value: 0.0

075183
type: SpeciesReference
stoichiometry: 1.0
species: 720621

720621
type: Species
notes: FORMULA: C5H4N4O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Urate

721063
type: Reaction
kinetic law: 087221
product: 087209
reactant: 087197
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: protoheme transport (chloroplast)

725990
type: LocalParameter
value: 0.0

725989
type: LocalParameter
value: 0.0

725986
type: LocalParameter
value: 1000.0

725985
type: LocalParameter
value: -1000.0

087209
type: SpeciesReference
stoichiometry: 1.0
species: 720101

087197
type: SpeciesReference
stoichiometry: 1.0
species: 720102

720102
type: Species
notes: FORMULA: C34H32FeN4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Protoheme

723629
type: Reaction
product: 176593
product: 176617
product: 176605
reversible: false
fast: false
reactant: 176580
notes: GENE_ASSOCIATION: CRv4_Au5.s14.g5384.t1 SUBSYSTEM: N-Glycan biosynthesis
kinetic law: 176629
name: alpha-1,2-mannosyltransferase (doldpglcnacglcnacman(man)manmanman)
reactant: 176568

176593
type: SpeciesReference
stoichiometry: 1.0
species: 718981

718981
type: Species
notes: FORMULA: C101H170N2O42P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man](3-a1)Man(2-a1)Man(2-a1)Man

176617
type: SpeciesReference
stoichiometry: 1.0
species: 719394

176605
type: SpeciesReference
stoichiometry: 1.0
species: 719238

176580
type: SpeciesReference
stoichiometry: 1.0
species: 719244

733979
type: LocalParameter
value: 0.0

733977
type: LocalParameter
value: 0.0

733976
type: LocalParameter
value: 1000.0

733975
type: LocalParameter
value: 0.0

176568
type: SpeciesReference
stoichiometry: 1.0
species: 718979

718979
type: Species
notes: FORMULA: C95H160N2O37P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: PP-Dol(-a1)GlcNAc(4-b1)GlcNAc(4-b1)Man[(6-a1)Man](3-a1)Man(2-a1)Man

719358
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: GMP

720476
type: Species
notes: FORMULA: C8H8FN2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Tegafur

722007
type: Reaction
name: carbonate dehydratase (HCO3 equilibration reaction), irreversible, chloroplast
product: 112713
reactant: 112689
notes: GENE_ASSOCIATION: CRv4_Au5.s9.g15785.t1 SUBSYSTEM: Carbon fixation
kinetic law: 112725
product: 112701
reversible: false
reactant: 112677
fast: false

112713
type: SpeciesReference
stoichiometry: 1.0
species: 719430

112689
type: SpeciesReference
stoichiometry: 1.0
species: 719460

728556
type: LocalParameter
value: 0.0

728554
type: LocalParameter
value: 0.0

728552
type: LocalParameter
value: 1000.0

728551
type: LocalParameter
value: 0.0

112701
type: SpeciesReference
stoichiometry: 1.0
species: 718659

112677
type: SpeciesReference
stoichiometry: 1.0
species: 719402

723841
type: Reaction
kinetic law: 190295
product: 190283
product: 190271
reactant: 190259
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10316.t1 SUBSYSTEM: Porphyrin and chlorophyll metabolism
fast: false
reversible: true
name: glutamate-1-semialdehyde aminotransferase

735027
type: LocalParameter
value: 0.0

735026
type: LocalParameter
value: 0.0

735024
type: LocalParameter
value: 1000.0

735023
type: LocalParameter
value: -1000.0

190283
type: SpeciesReference
stoichiometry: 1.0
species: 719402

190271
type: SpeciesReference
stoichiometry: 1.0
species: 718083

718083
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 5-Amino-4-oxopentanoate

190259
type: SpeciesReference
stoichiometry: 1.0
species: 719280

719280
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Glutamate 1-semialdehyde

723727
type: Reaction
kinetic law: 182609
reversible: true
reactant: 182549
product: 182597
product: 182585
name: 5,10-Methenyltetrahydrofolate aminomethyltransferase (ammonia-forming)
reactant: 182561
fast: false
notes: GENE_ASSOCIATION: ((CRv4_Au5.s10.g816.t1 and CRv4_Au5.s12.g4121.t1) or (CRv4_Au5.s10.g816.t1 and CRv4_Au5.s3.g11019.t1)) SUBSYSTEM: One carbon pool by folate
product: 182573
reactant: 182537

734408
type: LocalParameter
value: 0.0

734406
type: LocalParameter
value: 0.0

734405
type: LocalParameter
value: 1000.0

734404
type: LocalParameter
value: -1000.0

182549
type: SpeciesReference
stoichiometry: 1.0
species: 719404

182597
type: SpeciesReference
stoichiometry: 1.0
species: 719852

182585
type: SpeciesReference
stoichiometry: 1.0
species: 719774

182561
type: SpeciesReference
stoichiometry: 1.0
species: 720491

182573
type: SpeciesReference
stoichiometry: 1.0
species: 718913

182537
type: SpeciesReference
stoichiometry: 1.0
species: 718369

718369
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: S-Aminomethyldihydrolipoylprotein

720650
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: omega hydroxy linoleate (18:2(9Z,12Z))

719474
type: Species
notes: FORMULA: C16H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Hexadecanoate (n-C16:0)

719137
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Ferricytochrome c

722931
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reactant: 152154
kinetic law: 152190
product: 152178
fast: false
product: 152166
reactant: 152142
name: phospholipid: diacylglycerol acyltransferase (18:1(9Z))
reversible: false

152154
type: SpeciesReference
stoichiometry: 1.0
species: 719982

719982
type: Species
notes: FORMULA: C39H71O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1,2-di-(9Z)-octadecenoyl-sn-glycerol 3-phosphate

731493
type: LocalParameter
value: 0.0

731491
type: LocalParameter
value: 0.0

731489
type: LocalParameter
value: 1000.0

731487
type: LocalParameter
value: 0.0

152178
type: SpeciesReference
stoichiometry: 1.0
species: 720425

152166
type: SpeciesReference
stoichiometry: 1.0
species: 717171

152142
type: SpeciesReference
stoichiometry: 1.0
species: 717101

723909
type: Reaction
notes: GENE_ASSOCIATION: CRv4_Au5.s17.g7726.t1 SUBSYSTEM: Purine metabolism
reversible: false
reactant: 194971
product: 195019
product: 194995
kinetic law: 195031
fast: false
reactant: 194947
name: adenylosuccinate synthase, chloroplast
product: 195007
reactant: 194959
product: 194983

194971
type: SpeciesReference
stoichiometry: 1.0
species: 719574

719574
type: Species
notes: FORMULA: C10H11N4O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: IMP

195019
type: SpeciesReference
stoichiometry: 1.0
species: 720141

194995
type: SpeciesReference
stoichiometry: 1.0
species: 719240

719240
type: Species
notes: FORMULA: C10H12N5O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: GDP

735362
type: LocalParameter
value: 0.0

735361
type: LocalParameter
value: 0.0

735359
type: LocalParameter
value: 1000.0

735358
type: LocalParameter
value: 0.0

194947
type: SpeciesReference
stoichiometry: 1.0
species: 718469

195007
type: SpeciesReference
stoichiometry: 3.0
species: 719402

194959
type: SpeciesReference
stoichiometry: 1.0
species: 719384

719384
type: Species
notes: FORMULA: C10H12N5O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: GTP

194983
type: SpeciesReference
stoichiometry: 1.0
species: 718755

718755
type: Species
notes: FORMULA: C14H14N5O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: N6-(1,2-Dicarboxyethyl)-AMP

718255
type: Species
notes: FORMULA: HSR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: acyl carrier protein

722401
type: Reaction
name: fatty acid omega-hydroxylase (18:2(9Z,12Z))
product: 126599
product: 126611
kinetic law: 126635
reactant: 126575
fast: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s3.g10234.t1 and CRv4_Au5.s3.g11329.t1) SUBSYSTEM: Fatty acid metabolism
product: 126623
reversible: false
reactant: 126563
reactant: 126587

126599
type: SpeciesReference
stoichiometry: 1.0
species: 718715

126611
type: SpeciesReference
stoichiometry: 1.0
species: 719430

729688
type: LocalParameter
value: 0.0

729686
type: LocalParameter
value: 0.0

729685
type: LocalParameter
value: 1000.0

729683
type: LocalParameter
value: 0.0

126575
type: SpeciesReference
stoichiometry: 1.0
species: 719627

719627
type: Species
notes: FORMULA: C18H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: linoleic acid (all cis C18:2) n-6

126623
type: SpeciesReference
stoichiometry: 1.0
species: 720650

126563
type: SpeciesReference
stoichiometry: 1.0
species: 718719

126587
type: SpeciesReference
stoichiometry: 1.0
species: 719882

722263
type: Reaction
product: 120178
reactant: 120166
reversible: false
kinetic law: 120215
product: 120190
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s10.g406.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s4.g11616.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s7.g14144.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s22.g9840.t1)) SUBSYSTEM: Fatty acid biosynthesis
reactant: 120154
fast: false
product: 120203
name: 3-oxoacyl-[acyl-carrier-protein] synthase (n-C8:0)

120178
type: SpeciesReference
stoichiometry: 1.0
species: 717864

120166
type: SpeciesReference
stoichiometry: 1.0
species: 719658

729183
type: LocalParameter
value: 0.0

729181
type: LocalParameter
value: 0.0

729180
type: LocalParameter
value: 1000.0

729178
type: LocalParameter
value: 0.0

120190
type: SpeciesReference
stoichiometry: 1.0
species: 718257

120154
type: SpeciesReference
stoichiometry: 1.0
species: 719490

120203
type: SpeciesReference
stoichiometry: 1.0
species: 718659

718657
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: CO2

717249
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-2-Methylbutanoyl-CoA

722148
type: Reaction
reactant: 116066
reversible: false
product: 116102
product: 116090
kinetic law: 116114
reactant: 116078
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8757.t1 or CRv4_Au5.s2.g9246.t1) SUBSYSTEM: Cysteine metabolism
fast: false
name: aspartate aminotransferase, glutamate forming

116066
type: SpeciesReference
stoichiometry: 1.0
species: 717906

116102
type: SpeciesReference
stoichiometry: 1.0
species: 719298

116090
type: SpeciesReference
stoichiometry: 1.0
species: 717912

717912
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 3-Sulfinopyruvate

728844
type: LocalParameter
value: 0.0

728842
type: LocalParameter
value: 0.0

728840
type: LocalParameter
value: 1000.0

728839
type: LocalParameter
value: 0.0

116078
type: SpeciesReference
stoichiometry: 1.0
species: 718331

723440
type: Reaction
reactant: 169182
kinetic law: 169231
reactant: 169195
product: 169207
name: (S)-2-hydroxy-acid oxidase
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10576.t1 SUBSYSTEM: Glyoxylate metabolism
product: 169219
fast: false
reversible: false

169182
type: SpeciesReference
stoichiometry: 1.0
species: 719342

733293
type: LocalParameter
value: 0.0

733291
type: LocalParameter
value: 0.0

733290
type: LocalParameter
value: 1000.0

733287
type: LocalParameter
value: 0.0

169195
type: SpeciesReference
stoichiometry: 1.0
species: 719888

169207
type: SpeciesReference
stoichiometry: 1.0
species: 719312

719312
type: Species
notes: FORMULA: C2HO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Glyoxylate

169219
type: SpeciesReference
stoichiometry: 1.0
species: 719450

723756
type: Reaction
reactant: 184550
reactant: 184538
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s1.g1928.t1 SUBSYSTEM: Pantothenate and CoA biosynthesis
fast: false
name: 4'-Phosphopantothenate:L-cysteine ligase
product: 184586
product: 184598
reactant: 184526
product: 184562
product: 184574
kinetic law: 184610

184550
type: SpeciesReference
stoichiometry: 1.0
species: 718697

184538
type: SpeciesReference
stoichiometry: 1.0
species: 718497

184586
type: SpeciesReference
stoichiometry: 1.0
species: 719394

184598
type: SpeciesReference
stoichiometry: 1.0
species: 720179

184526
type: SpeciesReference
stoichiometry: 1.0
species: 718059

184562
type: SpeciesReference
stoichiometry: 1.0
species: 718062

718062
type: Species
notes: FORMULA: C12H19N2O9PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: N-((R)-4-Phosphopantothenoyl)-L-cysteine

184574
type: SpeciesReference
stoichiometry: 1.0
species: 718387

734577
type: LocalParameter
value: 0.0

734576
type: LocalParameter
value: 0.0

734574
type: LocalParameter
value: 1000.0

734573
type: LocalParameter
value: 0.0

722190
type: Reaction
product: 117115
product: 117103
fast: false
reactant: 117055
name: citalopram monooxygenase
kinetic law: 117127
reactant: 117067
reactant: 117079
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s7.g14253.t1 or CRv4_Au5.s7.g14520.t1 or CRv4_Au5.s7.g14521.t1) SUBSYSTEM: Drug metabolism - cytochrome P450
product: 117091

117115
type: SpeciesReference
stoichiometry: 1.0
species: 719801

117103
type: SpeciesReference
stoichiometry: 1.0
species: 719424

117055
type: SpeciesReference
stoichiometry: 1.0
species: 718631

718631
type: Species
notes: FORMULA: C20H22FN2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Citalopram

728928
type: LocalParameter
value: 0.0

728926
type: LocalParameter
value: 0.0

728924
type: LocalParameter
value: 1000.0

728923
type: LocalParameter
value: 0.0

117067
type: SpeciesReference
stoichiometry: 1.0
species: 719811

117079
type: SpeciesReference
stoichiometry: 1.0
species: 719879

117091
type: SpeciesReference
stoichiometry: 1.0
species: 718637

718637
type: Species
notes: FORMULA: C20H21FN2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Citalopram N-oxide

724016
type: Reaction
product: 201349
kinetic law: 201361
reactant: 201325
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8949.t1 or CRv4_Au5.s3.g11218.t1) SUBSYSTEM: Purine metabolism
name: sulfate adenylyltransferase
reversible: false
fast: false
reactant: 201312
reactant: 201300
product: 201337

201349
type: SpeciesReference
stoichiometry: 1.0
species: 720179

736034
type: LocalParameter
value: 0.0

736031
type: LocalParameter
value: 0.0

736028
type: LocalParameter
value: 1000.0

736025
type: LocalParameter
value: 0.0

201325
type: SpeciesReference
stoichiometry: 1.0
species: 720345

201312
type: SpeciesReference
stoichiometry: 1.0
species: 719394

201300
type: SpeciesReference
stoichiometry: 1.0
species: 718497

201337
type: SpeciesReference
stoichiometry: 1.0
species: 718417

722076
type: Reaction
kinetic law: 114404
product: 114391
reactant: 114377
notes: GENE_ASSOCIATION: CRv4_Au5.s6.g12748.t1 SUBSYSTEM: Carotenoid biosynthesis
fast: false
reversible: true
name: lycopene cyclase (epsilon-carotene producing)

728694
type: LocalParameter
value: 0.0

728692
type: LocalParameter
value: 0.0

728690
type: LocalParameter
value: 1000.0

728689
type: LocalParameter
value: -1000.0

114391
type: SpeciesReference
stoichiometry: 1.0
species: 719031

719031
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: epsilon-Carotene

114377
type: SpeciesReference
stoichiometry: 1.0
species: 718757

718757
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: delta-Carotene

718717
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Reduced flavoprotein (cytochrome P-450)

723938
type: Reaction
fast: false
product: 196635
reactant: 196623
name: ATP:IDP phosphotransferase, mitochondria
notes: GENE_ASSOCIATION: CRv4_Au5.s26.g9990.t1 SUBSYSTEM: Purine metabolism
reactant: 196611
kinetic law: 196659
product: 196647
reversible: false

196635
type: SpeciesReference
stoichiometry: 1.0
species: 718293

196623
type: SpeciesReference
stoichiometry: 1.0
species: 719559

719559
type: Species
notes: FORMULA: C10H11N4O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: IDP

196611
type: SpeciesReference
stoichiometry: 1.0
species: 718503

735494
type: LocalParameter
value: 0.0

735493
type: LocalParameter
value: 0.0

735491
type: LocalParameter
value: 1000.0

735490
type: LocalParameter
value: 0.0

196647
type: SpeciesReference
stoichiometry: 1.0
species: 719588

719588
type: Species
notes: FORMULA: C10H11N4O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: ITP

718409
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Apocytochrome c

723026
type: Reaction
reactant: 155121
product: 155169
kinetic law: 155181
reactant: 155133
fast: false
product: 155157
name: triacylglycerol acylhydrolase (16:0/18:1(11Z)/18:0)
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
product: 155145

155121
type: SpeciesReference
stoichiometry: 1.0
species: 719424

155169
type: SpeciesReference
stoichiometry: 1.0
species: 719907

731834
type: LocalParameter
value: 0.0

731832
type: LocalParameter
value: 0.0

731830
type: LocalParameter
value: 1000.0

731827
type: LocalParameter
value: 0.0

155133
type: SpeciesReference
stoichiometry: 1.0
species: 720404

155157
type: SpeciesReference
stoichiometry: 1.0
species: 719394

155145
type: SpeciesReference
stoichiometry: 1.0
species: 717095

720245
type: Species
notes: FORMULA: C8H8NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Pyridoxal phosphate

719840
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Nicotinamide adenine dinucleotide phosphate - reduced

719328
type: Species
notes: FORMULA: C3H8O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Glycerol

719502
type: Species
notes: FORMULA: C6H11N3O4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Histidinol phosphate

719073
type: Species
notes: FORMULA: C27H31N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Flavin adenine dinucleotide oxidized

724413
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s2.g8702.t1 or CRv4_Au5.s8.g15027.t1) SUBSYSTEM: Vitamin B6 metabolism
product: 221672
fast: false
reactant: 221648
kinetic law: 221684
product: 221660
reactant: 221636
reversible: false
name: Pyridoxine:oxygen oxidoreductase (deaminating)

221672
type: SpeciesReference
stoichiometry: 1.0
species: 720243

720243
type: Species
notes: FORMULA: C8H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Pyridoxal

221648
type: SpeciesReference
stoichiometry: 1.0
species: 720246

720246
type: Species
notes: FORMULA: C8H11NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Pyridoxine

738006
type: LocalParameter
value: 0.0

738004
type: LocalParameter
value: 0.0

738003
type: LocalParameter
value: 1000.0

738002
type: LocalParameter
value: 0.0

221660
type: SpeciesReference
stoichiometry: 1.0
species: 719442

221636
type: SpeciesReference
stoichiometry: 1.0
species: 719879

723282
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6846.t1 or CRv4_Au5.s2.g8547.t1) SUBSYSTEM: Glycine, serine and threonine metabolism
fast: false
reactant: 164273
product: 164297
kinetic law: 164321
reactant: 164261
name: D-Glycerate:NADP+ 2-oxidoreductase
product: 164309
product: 164285
reversible: true

164273
type: SpeciesReference
stoichiometry: 1.0
species: 719820

164297
type: SpeciesReference
stoichiometry: 1.0
species: 719526

719526
type: Species
notes: FORMULA: C3H3O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Hydroxypyruvate

732755
type: LocalParameter
value: 0.0

732752
type: LocalParameter
value: 0.0

732750
type: LocalParameter
value: 1000.0

732749
type: LocalParameter
value: -1000.0

164261
type: SpeciesReference
stoichiometry: 1.0
species: 719344

164309
type: SpeciesReference
stoichiometry: 1.0
species: 719832

164285
type: SpeciesReference
stoichiometry: 1.0
species: 719394

722529
type: Reaction
reactant: 132496
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4905.t1 SUBSYSTEM: Glutamate metabolism;Nitrogen metabolism
reactant: 132521
reactant: 132484
product: 132545
name: glutamate synthase (NADH)
product: 132533
kinetic law: 132557
reversible: false
reactant: 132509
fast: false

132496
type: SpeciesReference
stoichiometry: 1.0
species: 719274

719274
type: Species
notes: FORMULA: C5H10N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: L-Glutamine

132521
type: SpeciesReference
stoichiometry: 1.0
species: 719814

132484
type: SpeciesReference
stoichiometry: 1.0
species: 718331

132545
type: SpeciesReference
stoichiometry: 1.0
species: 719804

132533
type: SpeciesReference
stoichiometry: 2.0
species: 719298

730120
type: LocalParameter
value: 0.0

730118
type: LocalParameter
value: 0.0

730117
type: LocalParameter
value: 1000.0

730116
type: LocalParameter
value: 0.0

132509
type: SpeciesReference
stoichiometry: 1.0
species: 719402

721908
type: Reaction
reactant: 110365
product: 110377
reversible: false
fast: false
product: 110389
product: 110402
name: 3-oxoacyl-CoA synthase (18:0)
notes: GENE_ASSOCIATION: (CRv4_Au5.s16.g6129.t1 or CRv4_Au5.s17.g7486.t2) SUBSYSTEM: Biosynthesis of unsaturated fatty acids
kinetic law: 110414
reactant: 110352

110365
type: SpeciesReference
stoichiometry: 1.0
species: 720147

110377
type: SpeciesReference
stoichiometry: 1.0
species: 717870

717870
type: Species
notes: FORMULA: C39H64N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 3-Oxooctadecanoyl-CoA

110389
type: SpeciesReference
stoichiometry: 1.0
species: 718655

110402
type: SpeciesReference
stoichiometry: 1.0
species: 718665

728299
type: LocalParameter
value: 0.0

728296
type: LocalParameter
value: 0.0

728293
type: LocalParameter
value: 1000.0

728290
type: LocalParameter
value: 0.0

110352
type: SpeciesReference
stoichiometry: 1.0
species: 719660

723666
type: Reaction
product: 178544
product: 178532
reactant: 178520
reactant: 178508
kinetic law: 178556
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10923.t1 SUBSYSTEM: Nicotinate and nicotinamide metabolism
fast: false
reversible: true
name: nicotinamide phosphoribosyltransferase

178544
type: SpeciesReference
stoichiometry: 1.0
species: 720227

178532
type: SpeciesReference
stoichiometry: 1.0
species: 719844

719844
type: Species
notes: FORMULA: C6H6N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Nicotinamide

178520
type: SpeciesReference
stoichiometry: 1.0
species: 720179

178508
type: SpeciesReference
stoichiometry: 1.0
species: 719861

719861
type: Species
notes: FORMULA: C11H13N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: NMN

734123
type: LocalParameter
value: 0.0

734121
type: LocalParameter
value: 0.0

734120
type: LocalParameter
value: 1000.0

734119
type: LocalParameter
value: -1000.0

721203
type: Reaction
product: 090894
name: Aminophospholipid translocase (pe18111Z1829Z12Z), extracellular
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3783.t1 or CRv4_Au5.s12.g3784.t1 or CRv4_Au5.s16.g6192.t1) SUBSYSTEM: Transport, extracellular
kinetic law: 090906
product: 090882
reactant: 090818
reactant: 090831
product: 090870
reactant: 090844
fast: false
reversible: false
product: 090858

090894
type: SpeciesReference
stoichiometry: 1.0
species: 720137

726428
type: LocalParameter
value: 0.0

726427
type: LocalParameter
value: 0.0

726425
type: LocalParameter
value: 1000.0

726424
type: LocalParameter
value: 0.0

090882
type: SpeciesReference
stoichiometry: 1.0
species: 720041

720041
type: Species
notes: FORMULA: C41H76NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: phosphatidylethanolamine (18:1(11Z)/18:2(9Z,12Z))

090818
type: SpeciesReference
stoichiometry: 1.0
species: 718497

090831
type: SpeciesReference
stoichiometry: 1.0
species: 719424

090870
type: SpeciesReference
stoichiometry: 1.0
species: 719394

090844
type: SpeciesReference
stoichiometry: 1.0
species: 720039

720039
type: Species
notes: FORMULA: C41H76NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: phosphatidylethanolamine (18:1(11Z)/18:2(9Z,12Z))

090858
type: SpeciesReference
stoichiometry: 1.0
species: 718287

721499
type: Reaction
reversible: true
reactant: 098374
product: 098386
kinetic law: 098410
fast: false
product: 098398
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6506.t1 SUBSYSTEM: Transport, mitochondria
name: Dicarboxylate/tricarboxylate carrier (mal:cit), mitochondrial
reactant: 098361

098374
type: SpeciesReference
stoichiometry: 1.0
species: 719663

719663
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: L-Malate

098386
type: SpeciesReference
stoichiometry: 1.0
species: 718625

727185
type: LocalParameter
value: 0.0

727184
type: LocalParameter
value: 0.0

727182
type: LocalParameter
value: 1000.0

727181
type: LocalParameter
value: -1000.0

098398
type: SpeciesReference
stoichiometry: 1.0
species: 719667

719667
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Malate

098361
type: SpeciesReference
stoichiometry: 1.0
species: 718627

718005
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara[(2-b1)Ara](3-a1)Gal

724012
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s8.g15040.t1 or CRv4_Au5.s9.g15363.t1) SUBSYSTEM: Purine metabolism
product: 201131
product: 201143
name: ribose-phosphate diphosphokinase
kinetic law: 201155
reactant: 201094
reactant: 201106
reversible: false
product: 201119
fast: false

201131
type: SpeciesReference
stoichiometry: 1.0
species: 719394

201143
type: SpeciesReference
stoichiometry: 1.0
species: 720227

736004
type: LocalParameter
value: 0.0

736001
type: LocalParameter
value: 0.0

735998
type: LocalParameter
value: 1000.0

735995
type: LocalParameter
value: 0.0

201094
type: SpeciesReference
stoichiometry: 1.0
species: 718497

201106
type: SpeciesReference
stoichiometry: 1.0
species: 720263

720263
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: alpha-D-Ribose 5-phosphate

201119
type: SpeciesReference
stoichiometry: 1.0
species: 718387

724328
type: Reaction
kinetic law: 217499
product: 217487
reactant: 217475
notes: GENE_ASSOCIATION: CRv4_Au5.s18.g7938.t1 SUBSYSTEM: Tyrosine metabolism
fast: false
reversible: false
name: maleylacetoacetate isomerase, nucleus

737672
type: LocalParameter
value: 0.0

737670
type: LocalParameter
value: 0.0

737669
type: LocalParameter
value: 1000.0

737667
type: LocalParameter
value: 0.0

217487
type: SpeciesReference
stoichiometry: 1.0
species: 717957

717957
type: Species
notes: FORMULA: C8H6O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: 4-Fumarylacetoacetate

217475
type: SpeciesReference
stoichiometry: 1.0
species: 718029

718029
type: Species
notes: FORMULA: C8H6O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: 4-Maleylacetoacetate

722676
type: Reaction
kinetic law: 139052
reactant: 139004
reversible: false
reactant: 138992
fast: false
product: 139028
product: 139040
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g13684.t1 SUBSYSTEM: Glycerolipid metabolism
name: diacylglycerol kinase (18:1(9Z)/16:1(9Z))
product: 139016

730619
type: LocalParameter
value: 0.0

730618
type: LocalParameter
value: 0.0

730617
type: LocalParameter
value: 1000.0

730615
type: LocalParameter
value: 0.0

139004
type: SpeciesReference
stoichiometry: 1.0
species: 718501

138992
type: SpeciesReference
stoichiometry: 1.0
species: 717115

717115
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1,2-Diacyl-sn-glycerol (1-(9Z)-octadecenoyl,2-(9Z)-hexadecenoyl, 18:1(9Z)/16:1(9Z))

139028
type: SpeciesReference
stoichiometry: 1.0
species: 719402

139040
type: SpeciesReference
stoichiometry: 1.0
species: 719978

719978
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1-(9Z)-octadecenoyl,2-(9Z)-hexadecenoyl-sn-glycerol 3-phosphate

139016
type: SpeciesReference
stoichiometry: 1.0
species: 718291

722242
type: Reaction
reactant: 119140
reversible: true
name: 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0)
reactant: 119152
product: 119176
fast: false
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s3.g10590.t1)) SUBSYSTEM: Fatty acid biosynthesis
reactant: 119164
product: 119188
kinetic law: 119200

119140
type: SpeciesReference
stoichiometry: 1.0
species: 717855

119152
type: SpeciesReference
stoichiometry: 1.0
species: 719402

119176
type: SpeciesReference
stoichiometry: 1.0
species: 717747

717747
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: (R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]

119164
type: SpeciesReference
stoichiometry: 1.0
species: 719835

119188
type: SpeciesReference
stoichiometry: 1.0
species: 719823

729106
type: LocalParameter
value: 0.0

729104
type: LocalParameter
value: 0.0

729103
type: LocalParameter
value: 1000.0

729101
type: LocalParameter
value: -1000.0

717750
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-3-Hydroxyoctanoyl-CoA

723735
type: Reaction
kinetic law: 183164
product: 183152
reactant: 183140
reactant: 183128
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g135.t1 or CRv4_Au5.s2.g9250.t1 or CRv4_Au5.s2.g9408.t1) SUBSYSTEM: Oxidative phosphorylation
fast: false
reversible: false
name: inorganic pyrophosphatase

734472
type: LocalParameter
value: 0.0

734471
type: LocalParameter
value: 0.0

734469
type: LocalParameter
value: 1000.0

734468
type: LocalParameter
value: 0.0

183152
type: SpeciesReference
stoichiometry: 2.0
species: 720143

183140
type: SpeciesReference
stoichiometry: 1.0
species: 720182

183128
type: SpeciesReference
stoichiometry: 1.0
species: 719432

723022
type: Reaction
product: 155001
name: omega-6 desaturase (18:2(9Z,12Z)/16:0) (SQDG)
product: 155013
reversible: false
reactant: 154977
product: 155025
reactant: 154941
product: 154989
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s16.g6229.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s17.g7064.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s3.g10824.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s6.g13523.t1) or (CRv4_Au5.s13.g4871.t1 and CRv4_Au5.s7.g14133.t1)) SUBSYSTEM: Glycerolipid metabolism
fast: false
reactant: 154953
kinetic law: 155037
reactant: 154965

155001
type: SpeciesReference
stoichiometry: 2.0
species: 719430

155013
type: SpeciesReference
stoichiometry: 4.0
species: 719823

154977
type: SpeciesReference
stoichiometry: 1.0
species: 720369

155025
type: SpeciesReference
stoichiometry: 1.0
species: 720371

154941
type: SpeciesReference
stoichiometry: 1.0
species: 719099

154989
type: SpeciesReference
stoichiometry: 1.0
species: 719107

154953
type: SpeciesReference
stoichiometry: 4.0
species: 719835

731818
type: LocalParameter
value: 0.0

731816
type: LocalParameter
value: 0.0

731814
type: LocalParameter
value: 1000.0

731811
type: LocalParameter
value: 0.0

154965
type: SpeciesReference
stoichiometry: 1.0
species: 719882

723917
type: Reaction
product: 195528
reactant: 195503
reactant: 195491
name: adenosine 3',5'-phosphate 5'-nucleotidohydrolase
kinetic law: 195540
fast: false
reversible: false
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3057.t1 or CRv4_Au5.s12.g3265.t1 or CRv4_Au5.s14.g5412.t1 or CRv4_Au5.s14.g5413.t1 or CRv4_Au5.s14.g5413.t2 or CRv4_Au5.s15.g6002.t1 or CRv4_Au5.s7.g14281.t1 or CRv4_Au5.s18.g7954.t1) SUBSYSTEM: Purine metabolism
product: 195516

195528
type: SpeciesReference
stoichiometry: 1.0
species: 719394

195503
type: SpeciesReference
stoichiometry: 1.0
species: 719424

195491
type: SpeciesReference
stoichiometry: 1.0
species: 718559

735403
type: LocalParameter
value: 0.0

735402
type: LocalParameter
value: 0.0

735401
type: LocalParameter
value: 1000.0

735399
type: LocalParameter
value: 0.0

195516
type: SpeciesReference
stoichiometry: 1.0
species: 718387

722971
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s2.g8928.t1 SUBSYSTEM: Glycerolipid metabolism
reactant: 153361
reactant: 153348
name: phospholipid: diacylglycerol acyltransferase (16:0)
product: 153385
kinetic law: 153397
product: 153373
fast: false

153361
type: SpeciesReference
stoichiometry: 1.0
species: 719969

153348
type: SpeciesReference
stoichiometry: 1.0
species: 717117

153385
type: SpeciesReference
stoichiometry: 1.0
species: 720447

731633
type: LocalParameter
value: 0.0

731631
type: LocalParameter
value: 0.0

731629
type: LocalParameter
value: 1000.0

731627
type: LocalParameter
value: 0.0

153373
type: SpeciesReference
stoichiometry: 1.0
species: 717171

722229
type: Reaction
kinetic law: 118693
product: 118681
product: 118669
reactant: 118657
notes: GENE_ASSOCIATION: ((CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s16.g6129.t1) or (CRv4_Au5.s13.g4608.t1 and CRv4_Au5.s17.g7486.t2)) SUBSYSTEM: Fatty acid biosynthesis
fast: false
reversible: true
name: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)

729053
type: LocalParameter
value: 0.0

729052
type: LocalParameter
value: 0.0

729050
type: LocalParameter
value: 1000.0

729049
type: LocalParameter
value: -1000.0

118681
type: SpeciesReference
stoichiometry: 1.0
species: 720506

720506
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: trans-Tetradec-2-enoyl-[acyl-carrier protein]

118669
type: SpeciesReference
stoichiometry: 1.0
species: 719430

118657
type: SpeciesReference
stoichiometry: 1.0
species: 717747

719640
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Lipoylprotein

719655
type: Species
notes: FORMULA: C21H40O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 1-monoacylglycerol (18:1(11Z))

721860
type: Reaction
kinetic law: 109232
product: 109220
reactant: 109208
notes: GENE_ASSOCIATION: SUBSYSTEM: Biosynthesis of steroids
fast: false
reversible: true
name: lanosterol synthase

728136
type: LocalParameter
value: 0.0

728133
type: LocalParameter
value: 0.0

728130
type: LocalParameter
value: 1000.0

728127
type: LocalParameter
value: -1000.0

109220
type: SpeciesReference
stoichiometry: 1.0
species: 719601

109208
type: SpeciesReference
stoichiometry: 1.0
species: 720375

720375
type: Species
notes: FORMULA: C30H50O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (S)-Squalene-2,3-epoxide

724041
type: Reaction
product: 202584
reactant: 202560
name: ATP:dTMP phosphotransferase
product: 202596
reactant: 202572
notes: GENE_ASSOCIATION: (CRv4_Au5.s3.g10960.t1 or CRv4_Au5.s3.g10961.t1) SUBSYSTEM: Pyrimidine metabolism
kinetic law: 202608
reversible: false
fast: false

202584
type: SpeciesReference
stoichiometry: 1.0
species: 718287

202560
type: SpeciesReference
stoichiometry: 1.0
species: 718497

202596
type: SpeciesReference
stoichiometry: 1.0
species: 718999

718999
type: Species
notes: FORMULA: C10H13N2O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dTDP

202572
type: SpeciesReference
stoichiometry: 1.0
species: 719003

719003
type: Species
notes: FORMULA: C10H13N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dTMP

736222
type: LocalParameter
value: 0.0

736219
type: LocalParameter
value: 0.0

736216
type: LocalParameter
value: 1000.0

736213
type: LocalParameter
value: 0.0

723764
type: Reaction
reactant: 185170
product: 185182
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3600.t2 SUBSYSTEM: Pentose phosphate pathway
reversible: false
fast: false
product: 185206
reactant: 185158
product: 185194
name: phosphogluconate dehydrogenase
kinetic law: 185218

185170
type: SpeciesReference
stoichiometry: 1.0
species: 719820

185182
type: SpeciesReference
stoichiometry: 1.0
species: 718655

185206
type: SpeciesReference
stoichiometry: 1.0
species: 720293

720293
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: D-Ribulose 5-phosphate

185158
type: SpeciesReference
stoichiometry: 1.0
species: 718149

718149
type: Species
notes: FORMULA: C6H10O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 6-Phospho-D-gluconate

185194
type: SpeciesReference
stoichiometry: 1.0
species: 719832

734617
type: LocalParameter
value: 0.0

734616
type: LocalParameter
value: 0.0

734614
type: LocalParameter
value: 1000.0

734613
type: LocalParameter
value: 0.0

721413
type: Reaction
kinetic law: 096155
product: 096143
reactant: 096131
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: S-Adenosylmethioninamine transport via diffusion, mitochondria

726970
type: LocalParameter
value: 0.0

726969
type: LocalParameter
value: 0.0

726967
type: LocalParameter
value: 1000.0

726966
type: LocalParameter
value: -1000.0

096143
type: SpeciesReference
stoichiometry: 1.0
species: 718385

718385
type: Species
notes: FORMULA: C14H24N6O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: S-Adenosylmethioninamine

096131
type: SpeciesReference
stoichiometry: 1.0
species: 718381

717771
type: Species
notes: FORMULA: C24H36N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Hydroxypropionyl-CoA

723796
type: Reaction
product: 187164
product: 187152
kinetic law: 187176
product: 187140
reactant: 187116
reversible: false
fast: false
name: Shikimate kinase
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g373.t1 or CRv4_Au5.s16.g6257.t1) SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis
reactant: 187128

187164
type: SpeciesReference
stoichiometry: 1.0
species: 720344

720344
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Shikimate 5-phosphate

187152
type: SpeciesReference
stoichiometry: 1.0
species: 719402

734802
type: LocalParameter
value: 0.0

734801
type: LocalParameter
value: 0.0

734799
type: LocalParameter
value: 1000.0

734798
type: LocalParameter
value: 0.0

187140
type: SpeciesReference
stoichiometry: 1.0
species: 718291

187116
type: SpeciesReference
stoichiometry: 1.0
species: 718501

187128
type: SpeciesReference
stoichiometry: 1.0
species: 720342

720342
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Shikimate

723630
type: Reaction
product: 176665
kinetic law: 176701
product: 176677
product: 176689
reversible: false
name: alpha-1,2-mannosyltransferase (doldpglcnacglcnacman(manmanman)manmanman)
notes: GENE_ASSOCIATION: CRv4_Au5.s14.g5384.t1 SUBSYSTEM: N-Glycan biosynthesis
reactant: 176653
reactant: 176641
fast: false

176665
type: SpeciesReference
stoichiometry: 1.0
species: 718973

733984
type: LocalParameter
value: 0.0

733982
type: LocalParameter
value: 0.0

733981
type: LocalParameter
value: 1000.0

733980
type: LocalParameter
value: 0.0

176677
type: SpeciesReference
stoichiometry: 1.0
species: 718987

176689
type: SpeciesReference
stoichiometry: 1.0
species: 719394

176653
type: SpeciesReference
stoichiometry: 1.0
species: 718985

176641
type: SpeciesReference
stoichiometry: 1.0
species: 718975

723946
type: Reaction
reactant: 197140
product: 197152
product: 197164
name: 2'-Deoxyadenosine 5'-monophosphate phosphohydrolase
fast: false
kinetic law: 197176
reactant: 197128
reversible: true
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g777.t1 or CRv4_Au5.s13.g4526.t1) SUBSYSTEM: Purine metabolism

197140
type: SpeciesReference
stoichiometry: 1.0
species: 719424

197152
type: SpeciesReference
stoichiometry: 1.0
species: 718721

718721
type: Species
notes: FORMULA: C10H13N5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Deoxyadenosine

197164
type: SpeciesReference
stoichiometry: 1.0
species: 720137

735536
type: LocalParameter
value: 0.0

735534
type: LocalParameter
value: 0.0

735533
type: LocalParameter
value: 1000.0

735532
type: LocalParameter
value: -1000.0

197128
type: SpeciesReference
stoichiometry: 1.0
species: 718729

718729
type: Species
notes: FORMULA: C10H12N5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: dAMP

723662
type: Reaction
reactant: 178304
fast: false
product: 178328
name: NADP+ 2'-phosphohydrolase
notes: GENE_ASSOCIATION: SUBSYSTEM: Nicotinate and nicotinamide metabolism
kinetic law: 178340
product: 178316
reversible: false
reactant: 178292

178304
type: SpeciesReference
stoichiometry: 1.0
species: 720137

178328
type: SpeciesReference
stoichiometry: 1.0
species: 719820

734108
type: LocalParameter
value: 0.0

734106
type: LocalParameter
value: 0.0

734105
type: LocalParameter
value: 1000.0

734104
type: LocalParameter
value: 0.0

178316
type: SpeciesReference
stoichiometry: 1.0
species: 719424

178292
type: SpeciesReference
stoichiometry: 1.0
species: 719801

722490
type: Reaction
product: 130565
reactant: 130529
name: raffinose fructohydrolase
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g2840.t1 SUBSYSTEM: Galactose metabolism
reversible: false
reactant: 130541
product: 130553
fast: false
kinetic law: 130577

130565
type: SpeciesReference
stoichiometry: 1.0
species: 719681

130529
type: SpeciesReference
stoichiometry: 1.0
species: 719430

130541
type: SpeciesReference
stoichiometry: 1.0
species: 720267

130553
type: SpeciesReference
stoichiometry: 1.0
species: 719180

719180
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: beta-D-fructose

729990
type: LocalParameter
value: 0.0

729988
type: LocalParameter
value: 0.0

729987
type: LocalParameter
value: 1000.0

729986
type: LocalParameter
value: 0.0

721495
type: Reaction
reactant: 098253
product: 098265
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
reactant: 098241
product: 098277
name: L-malate transport to mitochondria by sodium-ion symport
fast: false
kinetic law: 098289
reversible: true

098253
type: SpeciesReference
stoichiometry: 1.0
species: 719792

098265
type: SpeciesReference
stoichiometry: 1.0
species: 719667

098241
type: SpeciesReference
stoichiometry: 1.0
species: 719663

098277
type: SpeciesReference
stoichiometry: 1.0
species: 719796

727175
type: LocalParameter
value: 0.0

727174
type: LocalParameter
value: 0.0

727172
type: LocalParameter
value: 1000.0

727171
type: LocalParameter
value: -1000.0

718519
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717082
name: Bathorhodopsin

723691
type: Reaction
product: 180160
name: UDP-galactose:O-glycan 1,2-alpha-D-galactosyltransferase (4hproaragal)
kinetic law: 180184
reversible: false
reactant: 180136
product: 180172
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s16.g6387.t1 SUBSYSTEM: O-Glycan biosynthesis
reactant: 180148

180160
type: SpeciesReference
stoichiometry: 1.0
species: 717993

717993
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara(2-a1)Gal

734228
type: LocalParameter
value: 0.0

734226
type: LocalParameter
value: 0.0

734225
type: LocalParameter
value: 1000.0

734224
type: LocalParameter
value: 0.0

180136
type: SpeciesReference
stoichiometry: 1.0
species: 717960

717960
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: Hyp(4-b1)Ara

180172
type: SpeciesReference
stoichiometry: 1.0
species: 720585

180148
type: SpeciesReference
stoichiometry: 1.0
species: 720600

720600
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717076
name: UDP-galactose

723290
type: Reaction
reactant: 164525
reactant: 164549
reactant: 164537
product: 164573
product: 164561
reversible: false
fast: false
kinetic law: 164597
product: 164585
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g308.t1 or CRv4_Au5.s5.g12019.t1) SUBSYSTEM: Glycine, serine and threonine metabolism
name: glycine---tRNA ligase

164525
type: SpeciesReference
stoichiometry: 1.0
species: 718497

164549
type: SpeciesReference
stoichiometry: 1.0
species: 720534

720534
type: Species
notes: FORMULA: C10H17O10PR2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: tRNA(Gly)

164537
type: SpeciesReference
stoichiometry: 1.0
species: 719314

164573
type: SpeciesReference
stoichiometry: 1.0
species: 719350

719350
type: Species
notes: FORMULA: C2H4NOR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Glycyl-tRNA(Gly)

164561
type: SpeciesReference
stoichiometry: 1.0
species: 718387

732784
type: LocalParameter
value: 0.0

732781
type: LocalParameter
value: 0.0

732779
type: LocalParameter
value: 1000.0

732778
type: LocalParameter
value: 0.0

164585
type: SpeciesReference
stoichiometry: 1.0
species: 720179

724307
type: Reaction
reversible: true
reactant: 216485
reactant: 216473
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s4.g11563.t1 SUBSYSTEM: TCA cycle;CO2 fixation
kinetic law: 216533
product: 216521
product: 216497
name: isocitrate dehydrogenase (NADP)
product: 216509

216485
type: SpeciesReference
stoichiometry: 1.0
species: 719820

216473
type: SpeciesReference
stoichiometry: 1.0
species: 719552

737584
type: LocalParameter
value: 0.0

737582
type: LocalParameter
value: 0.0

737581
type: LocalParameter
value: 1000.0

737579
type: LocalParameter
value: -1000.0

216521
type: SpeciesReference
stoichiometry: 1.0
species: 719832

216497
type: SpeciesReference
stoichiometry: 1.0
species: 718329

216509
type: SpeciesReference
stoichiometry: 1.0
species: 718655

723718
type: Reaction
kinetic law: 181958
product: 181946
name: Folate reductase
reactant: 181922
product: 181934
reactant: 181898
fast: false
reactant: 181910
reversible: false
notes: GENE_ASSOCIATION: CRv4_Au5.s17.g7362.t1 SUBSYSTEM: One carbon pool by folate

734363
type: LocalParameter
value: 0.0

734361
type: LocalParameter
value: 0.0

734360
type: LocalParameter
value: 1000.0

734359
type: LocalParameter
value: 0.0

181946
type: SpeciesReference
stoichiometry: 1.0
species: 719820

181922
type: SpeciesReference
stoichiometry: 1.0
species: 719832

181934
type: SpeciesReference
stoichiometry: 1.0
species: 718907

181898
type: SpeciesReference
stoichiometry: 1.0
species: 719150

719150
type: Species
notes: FORMULA: C19H17N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Folate

181910
type: SpeciesReference
stoichiometry: 1.0
species: 719394

724389
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s12.g3863.t1 and CRv4_Au5.s6.g13618.t1) SUBSYSTEM: Valine, leucine and isoleucine degradation
kinetic law: 220451
fast: false
reactant: 220412
product: 220425
reactant: 220399
product: 220438
name: 3-methyl-2-oxobutanoate dehydrogenase, 3-Methyl-1-hydroxybutyl-ThPP transforming
reversible: false

737916
type: LocalParameter
value: 0.0

737914
type: LocalParameter
value: 0.0

737913
type: LocalParameter
value: 1000.0

737912
type: LocalParameter
value: 0.0

220412
type: SpeciesReference
stoichiometry: 1.0
species: 719639

719639
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Lipoamide

220425
type: SpeciesReference
stoichiometry: 1.0
species: 717789

220399
type: SpeciesReference
stoichiometry: 1.0
species: 717795

717795
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Methyl-1-hydroxybutyl-ThPP

220438
type: SpeciesReference
stoichiometry: 1.0
species: 720495

724409
type: Reaction
product: 221468
fast: false
reversible: false
reactant: 221431
name: Pyridoxal:oxygen 4-oxidoreductase
notes: GENE_ASSOCIATION: CRv4_Au5.s18.g7940.t1 SUBSYSTEM: Vitamin B6 metabolism
product: 221443
reactant: 221419
kinetic law: 221480
reactant: 221407
product: 221455

221468
type: SpeciesReference
stoichiometry: 1.0
species: 719442

221431
type: SpeciesReference
stoichiometry: 1.0
species: 720243

221443
type: SpeciesReference
stoichiometry: 1.0
species: 718065

718065
type: Species
notes: FORMULA: C8H8NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 4-Pyridoxate

221419
type: SpeciesReference
stoichiometry: 1.0
species: 719879

737991
type: LocalParameter
value: 0.0

737989
type: LocalParameter
value: 0.0

737988
type: LocalParameter
value: 1000.0

737987
type: LocalParameter
value: 0.0

221407
type: SpeciesReference
stoichiometry: 1.0
species: 719424

221455
type: SpeciesReference
stoichiometry: 1.0
species: 719394

723760
type: Reaction
product: 184913
reactant: 184865
product: 184889
notes: GENE_ASSOCIATION: CRv4_Au5.s8.g15026.t1 SUBSYSTEM: Pentose phosphate pathway
reversible: false
kinetic law: 184925
name: glucose 6-phosphate dehydrogenase (g6p-A)
fast: false
product: 184901
reactant: 184877

184913
type: SpeciesReference
stoichiometry: 1.0
species: 719835

184865
type: SpeciesReference
stoichiometry: 1.0
species: 719204

719204
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: alpha-D-glucose 6 phosphate

184889
type: SpeciesReference
stoichiometry: 1.0
species: 718158

734597
type: LocalParameter
value: 0.0

734596
type: LocalParameter
value: 0.0

734594
type: LocalParameter
value: 1000.0

734593
type: LocalParameter
value: 0.0

184901
type: SpeciesReference
stoichiometry: 1.0
species: 719402

184877
type: SpeciesReference
stoichiometry: 1.0
species: 719823

717861
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: 3-Oxooctanoyl-CoA

721073
type: Reaction
kinetic law: 087425
product: 087413
reactant: 087401
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, chloroplast
fast: false
reversible: true
name: propanoyl-CoA transport, chloroplast

726026
type: LocalParameter
value: 0.0

726023
type: LocalParameter
value: 0.0

726022
type: LocalParameter
value: 1000.0

726019
type: LocalParameter
value: -1000.0

087413
type: SpeciesReference
stoichiometry: 1.0
species: 720170

087401
type: SpeciesReference
stoichiometry: 1.0
species: 720168

720694
type: Reaction
kinetic law: 074588
reactant: 074576
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: ammonia exchange

724529
type: LocalParameter
value: 0.0

724527
type: LocalParameter
value: 0.0

724525
type: LocalParameter
value: 0.0

724522
type: LocalParameter
value: -10.0

074576
type: SpeciesReference
stoichiometry: 1.0
species: 719849

719849
type: Species
notes: FORMULA: NH4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Ammonium

722208
type: Reaction
product: 117753
reactant: 117705
product: 117729
name: monoethylglycinexylidide amidohydrolase
kinetic law: 117765
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10440.t1 SUBSYSTEM: Drug metabolism - cytochrome P450
product: 117741
reactant: 117717
reversible: false
fast: false

117753
type: SpeciesReference
stoichiometry: 1.0
species: 719396

117705
type: SpeciesReference
stoichiometry: 1.0
species: 719426

719426
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: H2O

117729
type: SpeciesReference
stoichiometry: 1.0
species: 717209

717209
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: 2,6-Dimethylaniline

728976
type: LocalParameter
value: 0.0

728974
type: LocalParameter
value: 0.0

728972
type: LocalParameter
value: 1000.0

728971
type: LocalParameter
value: 0.0

117741
type: SpeciesReference
stoichiometry: 1.0
species: 719035

117717
type: SpeciesReference
stoichiometry: 1.0
species: 719679

719679
type: Species
notes: FORMULA: C12H19N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: Monoethylglycinexylidide

724336
type: Reaction
kinetic law: 217910
product: 217898
product: 217886
reactant: 217874
notes: GENE_ASSOCIATION: CRv4_Au5.s4.g11753.t1 SUBSYSTEM: Valine, leucine and isoleucine biosynthesis
fast: false
reversible: false
name: dihydroxy-acid dehydratase

737705
type: LocalParameter
value: 0.0

737703
type: LocalParameter
value: 0.0

737702
type: LocalParameter
value: 1000.0

737700
type: LocalParameter
value: 0.0

217898
type: SpeciesReference
stoichiometry: 1.0
species: 719424

217886
type: SpeciesReference
stoichiometry: 1.0
species: 717807

717807
type: Species
notes: FORMULA: C6H9O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (S)-3-Methyl-2-oxopentanoate

217874
type: SpeciesReference
stoichiometry: 1.0
species: 717191

717191
type: Species
notes: FORMULA: C6H11O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (R)-2,3-Dihydroxy-3-methylpentanoate

724020
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s10.g777.t1 or CRv4_Au5.s13.g4526.t1) SUBSYSTEM: Purine metabolism
reactant: 201542
name: XMP-5'-nucleotidase
fast: false
reversible: false
kinetic law: 201579
reactant: 201530
product: 201555
product: 201567

201542
type: SpeciesReference
stoichiometry: 1.0
species: 720656

720656
type: Species
notes: FORMULA: C10H11N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Xanthosine 5'-phosphate

736064
type: LocalParameter
value: 0.0

736061
type: LocalParameter
value: 0.0

736058
type: LocalParameter
value: 1000.0

736055
type: LocalParameter
value: 0.0

201530
type: SpeciesReference
stoichiometry: 1.0
species: 719424

201555
type: SpeciesReference
stoichiometry: 1.0
species: 720137

201567
type: SpeciesReference
stoichiometry: 1.0
species: 720660

723792
type: Reaction
kinetic law: 186899
product: 186887
reactant: 186875
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3447.t1 SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis
fast: false
reversible: true
name: phosphoribosylanthranilate isomerase

734782
type: LocalParameter
value: 0.0

734781
type: LocalParameter
value: 0.0

734779
type: LocalParameter
value: 1000.0

734778
type: LocalParameter
value: -1000.0

186887
type: SpeciesReference
stoichiometry: 1.0
species: 717223

717223
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate

186875
type: SpeciesReference
stoichiometry: 1.0
species: 720201

720201
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: N-(5-Phospho-D-ribosyl)anthranilate

719546
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717085
name: Hexanoyl-CoA (n-C6:0CoA)

721129
type: Reaction
kinetic law: 088822
product: 088810
reactant: 088798
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, extracellular
fast: false
reversible: true
name: acetamide transport, extracellular

726222
type: LocalParameter
value: 0.0

726219
type: LocalParameter
value: 0.0

726218
type: LocalParameter
value: 1000.0

726215
type: LocalParameter
value: -1000.0

088810
type: SpeciesReference
stoichiometry: 1.0
species: 718271

718271
type: Species
notes: FORMULA: C2H6NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: acetamide

088798
type: SpeciesReference
stoichiometry: 1.0
species: 718273

724368
type: Reaction
kinetic law: 219397
product: 219385
reactant: 219373
reactant: 219360
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g896.t1 SUBSYSTEM: Valine, leucine and isoleucine degradation
fast: false
reversible: true
name: enoyl-coa hydratase, 3-Hydroxyisovaleryl-CoA forming

737834
type: LocalParameter
value: 0.0

737833
type: LocalParameter
value: 0.0

737831
type: LocalParameter
value: 1000.0

737830
type: LocalParameter
value: -1000.0

219385
type: SpeciesReference
stoichiometry: 1.0
species: 717732

717732
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Hydroxyisovaleryl-CoA

219373
type: SpeciesReference
stoichiometry: 1.0
species: 719432

219360
type: SpeciesReference
stoichiometry: 1.0
species: 717786

717786
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Methylbut-2-enoyl-CoA

722598
type: Reaction
reactant: 135429
reactant: 135441
fast: false
product: 135465
product: 135453
name: acyl-CoA: diacylglycerol acyltransferase (18:1(11Z))
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1886.t1 or CRv4_Au5.s12.g4218.t1 or CRv4_Au5.s3.g11242.t1) SUBSYSTEM: Glycerolipid metabolism
kinetic law: 135477
reversible: false

135429
type: SpeciesReference
stoichiometry: 1.0
species: 717121

135441
type: SpeciesReference
stoichiometry: 1.0
species: 719921

719921
type: Species
notes: FORMULA: C39H64N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (11Z)-octadecenoyl-coa

135465
type: SpeciesReference
stoichiometry: 1.0
species: 720459

135453
type: SpeciesReference
stoichiometry: 1.0
species: 718665

730350
type: LocalParameter
value: 0.0

730348
type: LocalParameter
value: 0.0

730347
type: LocalParameter
value: 1000.0

730346
type: LocalParameter
value: 0.0

723030
type: Reaction
product: 155301
name: triacylglycerol acylhydrolase (16:0/18:1(11Z)/18:1(9Z))
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
fast: false
kinetic law: 155325
product: 155313
product: 155289
reactant: 155277
reactant: 155265
reversible: false

155301
type: SpeciesReference
stoichiometry: 1.0
species: 719394

731850
type: LocalParameter
value: 0.0

731848
type: LocalParameter
value: 0.0

731846
type: LocalParameter
value: 1000.0

731843
type: LocalParameter
value: 0.0

155313
type: SpeciesReference
stoichiometry: 1.0
species: 719913

155289
type: SpeciesReference
stoichiometry: 1.0
species: 717095

155277
type: SpeciesReference
stoichiometry: 1.0
species: 720407

155265
type: SpeciesReference
stoichiometry: 1.0
species: 719424

720176
type: Species
notes: FORMULA: C10H8O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Prephenate

724007
type: Reaction
kinetic law: 200756
reactant: 200696
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s7.g13810.t1 SUBSYSTEM: Purine metabolism
product: 200744
product: 200720
reversible: false
product: 200732
reactant: 200708
name: phosphoribosylformylglycinamidine cyclo-ligase

735964
type: LocalParameter
value: 0.0

735961
type: LocalParameter
value: 0.0

735958
type: LocalParameter
value: 1000.0

735955
type: LocalParameter
value: 0.0

200696
type: SpeciesReference
stoichiometry: 1.0
species: 718497

200744
type: SpeciesReference
stoichiometry: 1.0
species: 720137

200720
type: SpeciesReference
stoichiometry: 1.0
species: 718287

200732
type: SpeciesReference
stoichiometry: 1.0
species: 718325

200708
type: SpeciesReference
stoichiometry: 1.0
species: 719162

719162
type: Species
notes: FORMULA: C8H14N3O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: 2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine

723062
type: Reaction
product: 156422
product: 156410
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
fast: false
kinetic law: 156447
name: triacylglycerol acylhydrolase (18:1(11Z)/18:1(11Z)/18:0)
reversible: false
reactant: 156385
reactant: 156398
product: 156434

156422
type: SpeciesReference
stoichiometry: 1.0
species: 719394

156410
type: SpeciesReference
stoichiometry: 1.0
species: 717107

731978
type: LocalParameter
value: 0.0

731976
type: LocalParameter
value: 0.0

731974
type: LocalParameter
value: 1000.0

731971
type: LocalParameter
value: 0.0

156385
type: SpeciesReference
stoichiometry: 1.0
species: 719424

156398
type: SpeciesReference
stoichiometry: 1.0
species: 720431

156434
type: SpeciesReference
stoichiometry: 1.0
species: 719907

720879
type: Reaction
kinetic law: 082857
reactant: 082845
notes: GENE_ASSOCIATION: SUBSYSTEM: Demand
fast: false
reversible: false

725266
type: LocalParameter
value: 0.0

725263
type: LocalParameter
value: 0.0

725260
type: LocalParameter
value: 1000.0

725259
type: LocalParameter
value: 0.0

082845
type: SpeciesReference
stoichiometry: 1.0
species: 720626

722067
type: Reaction
kinetic law: 114292
product: 114280
reactant: 114268
notes: GENE_ASSOCIATION: CRv4_Au5.s41.g11880.t1 SUBSYSTEM: Carotenoid biosynthesis
fast: false
reversible: true
name: lycopene cyclase (alpha-carotene producing)

728676
type: LocalParameter
value: 0.0

728674
type: LocalParameter
value: 0.0

728672
type: LocalParameter
value: 1000.0

728671
type: LocalParameter
value: -1000.0

114280
type: SpeciesReference
stoichiometry: 1.0
species: 718221

114268
type: SpeciesReference
stoichiometry: 1.0
species: 718757

724081
type: Reaction
notes: GENE_ASSOCIATION: (CRv4_Au5.s13.g4539.t1 or CRv4_Au5.s16.g6690.t1 or CRv4_Au5.s2.g8820.t1) SUBSYSTEM: Pyrimidine metabolism
reactant: 204595
product: 204631
reactant: 204607
reversible: false
product: 204619
product: 204643
name: dTTP:uridine 5'-phosphotransferase
kinetic law: 204655
fast: false

204595
type: SpeciesReference
stoichiometry: 1.0
species: 719005

204631
type: SpeciesReference
stoichiometry: 1.0
species: 719394

204607
type: SpeciesReference
stoichiometry: 1.0
species: 720632

720632
type: Species
notes: FORMULA: C9H12N2O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Uridine

204619
type: SpeciesReference
stoichiometry: 1.0
species: 718999

204643
type: SpeciesReference
stoichiometry: 1.0
species: 720609

720609
type: Species
notes: FORMULA: C9H11N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: UMP

736482
type: LocalParameter
value: 0.0

736479
type: LocalParameter
value: 0.0

736476
type: LocalParameter
value: 1000.0

736475
type: LocalParameter
value: 0.0

720128
type: Species
notes: FORMULA: C9H7O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: Phenylpyruvate

722335
type: Reaction
kinetic law: 123623
product: 123610
product: 123598
reactant: 123586
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g896.t1 SUBSYSTEM: Fatty acid elongation in mitochondria
fast: false
reversible: true
name: enoyl-CoA hydratase (C10:0)

729447
type: LocalParameter
value: 0.0

729445
type: LocalParameter
value: 0.0

729444
type: LocalParameter
value: 1000.0

729442
type: LocalParameter
value: -1000.0

123610
type: SpeciesReference
stoichiometry: 1.0
species: 719432

123598
type: SpeciesReference
stoichiometry: 1.0
species: 718741

123586
type: SpeciesReference
stoichiometry: 1.0
species: 717693

717693
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-3-Hydroxydecanoyl-CoA

723091
type: Reaction
fast: false
reversible: false
reactant: 157444
kinetic law: 157504
name: triacylglycerol acylhydrolase (18:1(9Z)/18:1(11Z)/18:3(5Z,9Z,12Z))
reactant: 157456
notes: GENE_ASSOCIATION: (CRv4_Au5.s1.g1020.t1 or CRv4_Au5.s1.g2116.t1 or CRv4_Au5.s14.g5292.t1 or CRv4_Au5.s14.g5372.t1 or CRv4_Au5.s2.g9351.t1 or CRv4_Au5.s3.g11014.t1 or CRv4_Au5.s5.g12039.t1 or CRv4_Au5.s6.g12901.t1 or CRv4_Au5.s7.g13939.t1 or CRv4_Au5.s27.g10015.t1) SUBSYSTEM: Glycerolipid metabolism
product: 157468
product: 157492
product: 157480

157444
type: SpeciesReference
stoichiometry: 1.0
species: 719424

732094
type: LocalParameter
value: 0.0

732092
type: LocalParameter
value: 0.0

732090
type: LocalParameter
value: 1000.0

732087
type: LocalParameter
value: 0.0

157456
type: SpeciesReference
stoichiometry: 1.0
species: 720453

157468
type: SpeciesReference
stoichiometry: 1.0
species: 717117

157492
type: SpeciesReference
stoichiometry: 1.0
species: 719942

157480
type: SpeciesReference
stoichiometry: 1.0
species: 719394

717792
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Methylglutaconyl-CoA

720611
type: Species
notes: FORMULA: C9H11N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: UMP

720730
type: Reaction
kinetic law: 074951
reactant: 074939
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: histidine exchange

724676
type: LocalParameter
value: 0.0

724673
type: LocalParameter
value: 0.0

724670
type: LocalParameter
value: 0.0

724667
type: LocalParameter
value: 0.0

074939
type: SpeciesReference
stoichiometry: 1.0
species: 719498

719498
type: Species
notes: FORMULA: C6H9N3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717073
name: L-Histidine

717135
type: Species
notes: FORMULA: C3H4O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: 3-Phospho-D-glyceroyl phosphate

721421
type: Reaction
reversible: true
reactant: 096347
reactant: 096335
product: 096359
product: 096371
notes: GENE_ASSOCIATION: CRv4_Au5.s13.g4507.t1 SUBSYSTEM: Transport, mitochondria
name: Asparagine/H+ symporter, mitochondrial
kinetic law: 096384
fast: false

096347
type: SpeciesReference
stoichiometry: 1.0
species: 719394

096335
type: SpeciesReference
stoichiometry: 1.0
species: 718457

096359
type: SpeciesReference
stoichiometry: 1.0
species: 718459

718459
type: Species
notes: FORMULA: C4H8N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: L-Asparagine

096371
type: SpeciesReference
stoichiometry: 2.0
species: 719404

726990
type: LocalParameter
value: 0.0

726989
type: LocalParameter
value: 0.0

726987
type: LocalParameter
value: 1000.0

726986
type: LocalParameter
value: -1000.0

719600
type: Species
notes: FORMULA: C3H6O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717072
name: (R)-Lactaldehyde

721609
type: Reaction
kinetic law: 101202
product: 101190
reactant: 101178
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, nucleus
fast: false
reversible: true
name: Ammonium transporter, nucleus

727460
type: LocalParameter
value: 0.0

727459
type: LocalParameter
value: 0.0

727457
type: LocalParameter
value: 1000.0

727456
type: LocalParameter
value: -1000.0

101190
type: SpeciesReference
stoichiometry: 1.0
species: 719853

719853
type: Species
notes: FORMULA: NH4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717080
name: Ammonium

101178
type: SpeciesReference
stoichiometry: 1.0
species: 719847

721453
type: Reaction
kinetic law: 097250
product: 097238
reactant: 097226
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, mitochondria
fast: false
reversible: true
name: butanoyl-CoA transport (mitochondria)

727070
type: LocalParameter
value: 0.0

727069
type: LocalParameter
value: 0.0

727067
type: LocalParameter
value: 1000.0

727066
type: LocalParameter
value: -1000.0

097238
type: SpeciesReference
stoichiometry: 1.0
species: 718539

718539
type: Species
notes: FORMULA: C25H38N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: Butanoyl-CoA

097226
type: SpeciesReference
stoichiometry: 1.0
species: 718535

722338
type: Reaction
kinetic law: 123719
product: 123707
product: 123695
reactant: 123683
notes: GENE_ASSOCIATION: CRv4_Au5.s10.g896.t1 SUBSYSTEM: Fatty acid elongation in mitochondria
fast: false
reversible: true
name: enoyl-CoA hydratase (C14:0)

729458
type: LocalParameter
value: 0.0

729456
type: LocalParameter
value: 0.0

729455
type: LocalParameter
value: 1000.0

729453
type: LocalParameter
value: -1000.0

123707
type: SpeciesReference
stoichiometry: 1.0
species: 720465

720465
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: trans-Tetradec-2-enoyl-CoA

123695
type: SpeciesReference
stoichiometry: 1.0
species: 719432

123683
type: SpeciesReference
stoichiometry: 1.0
species: 717777

717777
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717079
name: (S)-3-Hydroxytetradecanoyl-CoA

723670
type: Reaction
reversible: false
fast: false
reactant: 178700
product: 178736
notes: GENE_ASSOCIATION: CRv4_Au5.s3.g10835.t1 SUBSYSTEM: Nicotinate and nicotinamide metabolism
kinetic law: 178748
product: 178724
product: 178712
name: NAD+ phosphohydrolase
reactant: 178688

178700
type: SpeciesReference
stoichiometry: 1.0
species: 719801

178736
type: SpeciesReference
stoichiometry: 1.0
species: 719861

734138
type: LocalParameter
value: 0.0

734136
type: LocalParameter
value: 0.0

734135
type: LocalParameter
value: 1000.0

734134
type: LocalParameter
value: 0.0

178724
type: SpeciesReference
stoichiometry: 3.0
species: 719394

178712
type: SpeciesReference
stoichiometry: 1.0
species: 718387

178688
type: SpeciesReference
stoichiometry: 1.0
species: 719424

721635
type: Reaction
kinetic law: 101856
product: 101844
reactant: 101832
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport, thylakoid lumen
fast: false
reversible: true
name: Geranylgeranyl diphosphate transport via diffusion, thylakoid lumen

727525
type: LocalParameter
value: 0.0

727524
type: LocalParameter
value: 0.0

727522
type: LocalParameter
value: 1000.0

727521
type: LocalParameter
value: -1000.0

101844
type: SpeciesReference
stoichiometry: 1.0
species: 719254

719254
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717083
name: Geranylgeranyl diphosphate

101832
type: SpeciesReference
stoichiometry: 1.0
species: 719252

719252
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: Geranylgeranyl diphosphate

720690
type: Reaction
kinetic law: 074515
reactant: 074503
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: H+ exchange

724505
type: LocalParameter
value: 0.0

724502
type: LocalParameter
value: 0.0

724500
type: LocalParameter
value: 1000.0

724497
type: LocalParameter
value: -10.0

074503
type: SpeciesReference
stoichiometry: 1.0
species: 719396

719909
type: Species
notes: FORMULA: C18H35O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 717077
name: octadecanoate (n-C18:0)

723329
type: Reaction
kinetic law: 165934
fast: false
notes: GENE_ASSOCIATION: CRv4_Au5.s12.g3901.t1 SUBSYSTEM: Glycolysis / Gluconeogenesis
product: 165922
reactant: 165874
reversible: false
reactant: 165886
product: 165898
product: 165910
name: Acylphosphatase, chloroplast