MODEL1105030000
type: SBMLModel
reaction: 180486
reaction: 181063
species: 179643
species: 179944
reaction: 181419
reaction: 184088
reaction: 183981
reaction: 182745
species: 178155
reaction: 182610
reaction: 183200
reaction: 181799
reaction: 181499
reaction: 184089
reaction: 184019
reaction: 183691
reaction: 181664
species: 179285
reaction: 184702
reaction: 183912
reaction: 182808
reaction: 180495
species: 178836
species: 179195
reaction: 184247
reaction: 183392
reaction: 181365
reaction: 180882
reaction: 181815
reaction: 183569
reaction: 184679
species: 179295
reaction: 181530
reaction: 184275
reaction: 183434
species: 179385
reaction: 180435
species: 177329
species: 177849
reaction: 180609
species: 178646
reaction: 184545
reaction: 180891
species: 178378
species: 178044
reaction: 184107
species: 178746
reaction: 183611
reaction: 180957
reaction: 180657
species: 179137
reaction: 180822
species: 179505
reaction: 182766
reaction: 182631
species: 177191
reaction: 183589
reaction: 181685
species: 179327
reaction: 183185
reaction: 183933
reaction: 183050
species: 178556
species: 179976
species: 179675
species: 178466
species: 180030
reaction: 181836
species: 178834
reaction: 184296
reaction: 183455
species: 178566
reaction: 183017
species: 177448
reaction: 182244
species: 178656
reaction: 183767
species: 178460
reaction: 181179

180486
type: Reaction
reactant: 159936
name: 3 3 hydroxy phenyl propionate hydroxylase
notes: GENE_ASSOCIATION: b0347 SUBSYSTEM: Alternate Carbon Metabolism
reversible: false
reactant: 159924
kinetic law: 160008
fast: false
product: 159996
product: 159972
product: 159984
reactant: 159960
reactant: 159948

159936
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178743
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: H

177168
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Cytoplasm

159924
type: SpeciesReference
stoichiometry: 1.0
species: 177773

177773
type: Species
notes: FORMULA: C9H9O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-3-hydroxy-phenyl-propionate

185359
type: LocalParameter
value: 0.0

185358
type: LocalParameter
value: 0.0

185356
type: LocalParameter
value: 1000.0

185355
type: LocalParameter
value: 0.0

159996
type: SpeciesReference
stoichiometry: 1.0
species: 179167

179167
type: Species
notes: FORMULA: C21H26N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nicotinamide-adenine-dinucleotide

159972
type: SpeciesReference
stoichiometry: 1.0
species: 178389

178389
type: Species
notes: FORMULA: C9H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-2-3-Dihydroxyphenyl-propanoate

159984
type: SpeciesReference
stoichiometry: 1.0
species: 178737

178737
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: H2O

159960
type: SpeciesReference
stoichiometry: 1.0
species: 179229

179229
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: O2

159948
type: SpeciesReference
stoichiometry: 1.0
species: 179169

179169
type: Species
notes: FORMULA: C21H27N7O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nicotinamide-adenine-dinucleotide--reduced

181063
type: Reaction
reactant: 173115
product: 173140
notes: GENE_ASSOCIATION: ( b0657 and b1677 ) SUBSYSTEM: Unassigned
kinetic law: 173153
reactant: 173103
product: 173127
fast: false
reversible: false
name: apolipoprotein N acyltransferase phosphatidylglycerol periplasm

173115
type: SpeciesReference
stoichiometry: 1.0
species: 179395

179395
type: Species
notes: FORMULA: C38H74O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerol-dihexadecanoyl-n-C160

177171
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Periplasm

173140
type: SpeciesReference
stoichiometry: 1.0
species: 178890

178890
type: Species
notes: FORMULA: XC16H30O1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: lipoprotein

187297
type: LocalParameter
value: 0.0

187296
type: LocalParameter
value: 0.0

187295
type: LocalParameter
value: 1000.0

186664
type: LocalParameter
value: 0.0

173103
type: SpeciesReference
stoichiometry: 1.0
species: 178077

178077
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: applipoprotein

173127
type: SpeciesReference
stoichiometry: 1.0
species: 177435

177435
type: Species
notes: FORMULA: C22H44O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C160

179643
type: Species
notes: FORMULA: C7H13O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Sedoheptulose-7-phosphate

179944
type: Species
notes: FORMULA: O4W1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tungstate

181419
type: Reaction
fast: false
product: 194331
kinetic law: 194355
reactant: 194319
reversible: true
notes: GENE_ASSOCIATION: b0038 SUBSYSTEM: Oxidative Phosphorylation
reactant: 194307
product: 194343
name: gamma butyrobetainyl CoA carnitine CoA transferase

194331
type: SpeciesReference
stoichiometry: 1.0
species: 178307

178307
type: Species
notes: FORMULA: C28H46N8O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Carnitinyl-CoA

188428
type: LocalParameter
value: 0.0

188427
type: LocalParameter
value: 0.0

188424
type: LocalParameter
value: 1000.0

188423
type: LocalParameter
value: -1000.0

194319
type: SpeciesReference
stoichiometry: 1.0
species: 178304

178304
type: Species
notes: FORMULA: C7H15NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Carnitine

194307
type: SpeciesReference
stoichiometry: 1.0
species: 178176

178176
type: Species
notes: FORMULA: C28H46N8O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: gamma-butyrobetainyl-CoA

194343
type: SpeciesReference
stoichiometry: 1.0
species: 178632

178632
type: Species
notes: FORMULA: C7H15NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: gamma-butyrobetaine

184088
type: Reaction
reactant: 279192
product: 279228
product: 279216
reactant: 279180
kinetic law: 279252
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport Inner Membrane
product: 279240
product: 279204
name: phosphatidylglycerol transport via ABC system n C161 periplasm
reversible: false
fast: false
reactant: 279168

279192
type: SpeciesReference
stoichiometry: 1.0
species: 179397

179397
type: Species
notes: FORMULA: C38H70O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerol-dihexadec-9-enoyl-n-C161

279228
type: SpeciesReference
stoichiometry: 1.0
species: 179399

179399
type: Species
notes: FORMULA: C38H70O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerol-dihexadec-9-enoyl-n-C161

279216
type: SpeciesReference
stoichiometry: 1.0
species: 178743

279180
type: SpeciesReference
stoichiometry: 1.0
species: 178737

197771
type: LocalParameter
value: 0.0

197768
type: LocalParameter
value: 0.0

197767
type: LocalParameter
value: 1000.0

197764
type: LocalParameter
value: 0.0

279240
type: SpeciesReference
stoichiometry: 1.0
species: 179463

179463
type: Species
notes: FORMULA: HO4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphate

279204
type: SpeciesReference
stoichiometry: 1.0
species: 178016

178016
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ADP

279168
type: SpeciesReference
stoichiometry: 1.0
species: 178173

178173
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ATP

183981
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
fast: false
reversible: false
kinetic law: 273924
product: 273899
product: 273875
reactant: 273851
product: 273863
reactant: 273814
product: 273911
product: 273887
reactant: 273826
reactant: 273839
name: 2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase anaerobic

197332
type: LocalParameter
value: 0.0

197331
type: LocalParameter
value: 0.0

197329
type: LocalParameter
value: 1000.0

197328
type: LocalParameter
value: 0.0

273899
type: SpeciesReference
stoichiometry: 1.0
species: 179169

273875
type: SpeciesReference
stoichiometry: 2.0
species: 178016

273851
type: SpeciesReference
stoichiometry: 1.0
species: 179167

273863
type: SpeciesReference
stoichiometry: 1.0
species: 177568

177568
type: Species
notes: FORMULA: C48H74O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1-4-benzoquinol

273814
type: SpeciesReference
stoichiometry: 1.0
species: 177571

177571
type: Species
notes: FORMULA: C48H74O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Octaprenyl-3-methyl-6-methoxy-1-4-benzoquinol

273911
type: SpeciesReference
stoichiometry: 2.0
species: 179463

273887
type: SpeciesReference
stoichiometry: 3.0
species: 178743

273826
type: SpeciesReference
stoichiometry: 2.0
species: 178173

273839
type: SpeciesReference
stoichiometry: 3.0
species: 178737

182745
type: Reaction
reactant: 243882
fast: false
reactant: 243894
product: 243919
notes: GENE_ASSOCIATION: b4040 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
reversible: false
name: Hydroxybenzoate octaprenyltransferase
kinetic law: 243931
product: 243907

243882
type: SpeciesReference
stoichiometry: 1.0
species: 177852

177852
type: Species
notes: FORMULA: C7H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Hydroxybenzoate

243894
type: SpeciesReference
stoichiometry: 1.0
species: 179269

179269
type: Species
notes: FORMULA: C40H65O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: all-trans-Octaprenyl-diphosphate

243919
type: SpeciesReference
stoichiometry: 1.0
species: 179501

179501
type: Species
notes: FORMULA: HO7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Diphosphate

194100
type: LocalParameter
value: 0.0

194099
type: LocalParameter
value: 0.0

194097
type: LocalParameter
value: 1000.0

194096
type: LocalParameter
value: 0.0

243907
type: SpeciesReference
stoichiometry: 1.0
species: 177824

177824
type: Species
notes: FORMULA: C47H69O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Octaprenyl-4-hydroxybenzoate

178155
type: Species
notes: FORMULA: C4H8N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Asparagine

182610
type: Reaction
reactant: 241176
notes: GENE_ASSOCIATION: b2239 SUBSYSTEM: Glycerophospholipid Metabolism
kinetic law: 241225
product: 241188
product: 241213
name: Glycerophosphodiester phosphodiesterase Glycerophosphoinositol
reactant: 241164
reversible: false
fast: false
product: 241201

241176
type: SpeciesReference
stoichiometry: 1.0
species: 178739

178739
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: H2O

193853
type: LocalParameter
value: 0.0

193851
type: LocalParameter
value: 0.0

193850
type: LocalParameter
value: 1000.0

193848
type: LocalParameter
value: 0.0

241188
type: SpeciesReference
stoichiometry: 1.0
species: 178692

178692
type: Species
notes: FORMULA: C3H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Glycerol-3-phosphate

241213
type: SpeciesReference
stoichiometry: 1.0
species: 178812

178812
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: myo-Inositol

241164
type: SpeciesReference
stoichiometry: 1.0
species: 178593

178593
type: Species
notes: FORMULA: C9H18O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: sn-Glycero-3-phospho-1-inositol

241201
type: SpeciesReference
stoichiometry: 1.0
species: 178745

178745
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: H

183200
type: Reaction
notes: GENE_ASSOCIATION: b0494 SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 253553
name: Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140 periplasm
product: 253577
reversible: false
reactant: 253565
product: 253589
product: 253601
kinetic law: 253614
fast: false

253553
type: SpeciesReference
stoichiometry: 1.0
species: 177245

177245
type: Species
notes: FORMULA: C19H40NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-Acyl-sn-glycero-3-phosphoethanolamine-n-C140

253577
type: SpeciesReference
stoichiometry: 1.0
species: 178587

178587
type: Species
notes: FORMULA: C5H14NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: sn-Glycero-3-phosphoethanolamine

253565
type: SpeciesReference
stoichiometry: 1.0
species: 178739

253589
type: SpeciesReference
stoichiometry: 1.0
species: 178745

253601
type: SpeciesReference
stoichiometry: 1.0
species: 179936

179936
type: Species
notes: FORMULA: C14H27O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: tetradecanoate-n-C140

195252
type: LocalParameter
value: 0.0

195251
type: LocalParameter
value: 0.0

195249
type: LocalParameter
value: 1000.0

195248
type: LocalParameter
value: 0.0

181799
type: Reaction
kinetic law: 216170
reactant: 216157
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Glycerophosphoserine exchange

190815
type: LocalParameter
value: 0.0

190812
type: LocalParameter
value: 0.0

190811
type: LocalParameter
value: 1000.0

190808
type: LocalParameter
value: 0.0

216157
type: SpeciesReference
stoichiometry: 1.0
species: 178595

178595
type: Species
notes: FORMULA: C6H13NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Glycerophosphoserine

177169
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0
name: Extracellular

181499
type: Reaction
product: 203794
kinetic law: 203818
reversible: false
product: 203806
name: CDP diacylglycerol synthetase n C181
fast: false
reactant: 203758
reactant: 203770
notes: GENE_ASSOCIATION: b0175 SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 203782

203794
type: SpeciesReference
stoichiometry: 1.0
species: 178230

178230
type: Species
notes: FORMULA: C48H83N3O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: CDP-1-2-dioctadec-11-enoylglycerol

188792
type: LocalParameter
value: 0.0

188791
type: LocalParameter
value: 0.0

188790
type: LocalParameter
value: 1000.0

188789
type: LocalParameter
value: 0.0

203806
type: SpeciesReference
stoichiometry: 1.0
species: 179501

203758
type: SpeciesReference
stoichiometry: 1.0
species: 178314

178314
type: Species
notes: FORMULA: C9H12N3O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: CTP

203770
type: SpeciesReference
stoichiometry: 1.0
species: 178743

203782
type: SpeciesReference
stoichiometry: 1.0
species: 179323

179323
type: Species
notes: FORMULA: C39H71O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate

184089
type: Reaction
reactant: 279276
product: 279324
reactant: 279288
kinetic law: 279349
reversible: false
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport Inner Membrane
reactant: 279264
product: 279337
product: 279312
name: phosphatidylglycerol transport via ABC system n C180 periplasm
product: 279300
fast: false

279276
type: SpeciesReference
stoichiometry: 1.0
species: 178737

279324
type: SpeciesReference
stoichiometry: 1.0
species: 179403

179403
type: Species
notes: FORMULA: C42H82O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerol-dioctadecanoyl-n-C180

279288
type: SpeciesReference
stoichiometry: 1.0
species: 179401

179401
type: Species
notes: FORMULA: C42H82O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerol-dioctadecanoyl-n-C180

197777
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value: 0.0

197776
type: LocalParameter
value: 0.0

197773
type: LocalParameter
value: 1000.0

197772
type: LocalParameter
value: 0.0

279264
type: SpeciesReference
stoichiometry: 1.0
species: 178173

279337
type: SpeciesReference
stoichiometry: 1.0
species: 179463

279312
type: SpeciesReference
stoichiometry: 1.0
species: 178743

279300
type: SpeciesReference
stoichiometry: 1.0
species: 178016

184019
type: Reaction
reactant: 275767
reversible: true
fast: false
product: 275803
name: phenylacetaldehyde reversible transport via proton symport periplasm
product: 275791
reactant: 275779
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Inner Membrane
kinetic law: 275815

275767
type: SpeciesReference
stoichiometry: 1.0
species: 178745

275803
type: SpeciesReference
stoichiometry: 1.0
species: 179329

179329
type: Species
notes: FORMULA: C8H8O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phenylacetaldehyde

275791
type: SpeciesReference
stoichiometry: 1.0
species: 178743

275779
type: SpeciesReference
stoichiometry: 1.0
species: 179333

179333
type: Species
notes: FORMULA: C8H8O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phenylacetaldehyde

197473
type: LocalParameter
value: 0.0

197471
type: LocalParameter
value: 0.0

197470
type: LocalParameter
value: 1000.0

197467
type: LocalParameter
value: -1000.0

183691
type: Reaction
kinetic law: 264083
product: 264071
reactant: 264059
notes: GENE_ASSOCIATION: b3040 SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
reversible: false
name: manganese transport in via permease no H

196335
type: LocalParameter
value: 0.0

196333
type: LocalParameter
value: 0.0

196331
type: LocalParameter
value: 1000.0

196329
type: LocalParameter
value: 0.0

264071
type: SpeciesReference
stoichiometry: 1.0
species: 179085

179085
type: Species
notes: FORMULA: Mn
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Mn2

264059
type: SpeciesReference
stoichiometry: 1.0
species: 179089

179089
type: Species
notes: FORMULA: Mn
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Mn2

181664
type: Reaction
kinetic law: 213269
reactant: 213257
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: meso 2 6 Diaminoheptanedioate exchange

189772
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value: 0.0

189769
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value: 0.0

189766
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value: 1000.0

189763
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value: 0.0

213257
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stoichiometry: 1.0
species: 177388

177388
type: Species
notes: FORMULA: C7H14N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: meso-2-6-Diaminoheptanedioate

179285
type: Species
notes: FORMULA: C5H13N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Ornithine

184702
type: Reaction
kinetic law: 302766
product: 302754
reactant: 302742
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: thiosulfate transport via diffusion extracellular to periplasm

200113
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value: 0.0

200110
type: LocalParameter
value: 0.0

200107
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value: 1000.0

200106
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value: -1000.0

302754
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stoichiometry: 1.0
species: 179930

179930
type: Species
notes: FORMULA: O3S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Thiosulfate

302742
type: SpeciesReference
stoichiometry: 1.0
species: 179928

179928
type: Species
notes: FORMULA: O3S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Thiosulfate

183912
type: Reaction
name: nucleoside triphosphatase GTP
notes: GENE_ASSOCIATION: b4161 SUBSYSTEM: Nucleotide Salvage Pathway
reactant: 270973
fast: false
reactant: 270961
product: 270985
product: 270997
kinetic law: 271021
reversible: false
product: 271009

270973
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stoichiometry: 1.0
species: 178737

270961
type: SpeciesReference
stoichiometry: 1.0
species: 178723

178723
type: Species
notes: FORMULA: C10H12N5O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: GTP

270985
type: SpeciesReference
stoichiometry: 1.0
species: 178636

178636
type: Species
notes: FORMULA: C10H12N5O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: GDP

270997
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stoichiometry: 1.0
species: 178743

197078
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value: 0.0

197077
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value: 0.0

197075
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value: 1000.0

197074
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value: 0.0

271009
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stoichiometry: 1.0
species: 179463

182808
type: Reaction
product: 245252
reactant: 245227
reversible: false
product: 245264
reactant: 245201
kinetic law: 245288
name: Mercury Hg2 ABC transporter periplasm
notes: GENE_ASSOCIATION: b3469 SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
product: 245240
reactant: 245214
product: 245276

245252
type: SpeciesReference
stoichiometry: 1.0
species: 178743

245227
type: SpeciesReference
stoichiometry: 1.0
species: 178761

178761
type: Species
notes: FORMULA: Hg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hg2

245264
type: SpeciesReference
stoichiometry: 1.0
species: 178763

178763
type: Species
notes: FORMULA: Hg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Hg2

245201
type: SpeciesReference
stoichiometry: 1.0
species: 178173

194562
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value: 0.0

194561
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value: 0.0

194559
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value: 1000.0

194558
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value: 0.0

245240
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stoichiometry: 1.0
species: 178016

245214
type: SpeciesReference
stoichiometry: 1.0
species: 178737

245276
type: SpeciesReference
stoichiometry: 1.0
species: 179463

180495
type: Reaction
product: 160190
fast: false
reactant: 160154
notes: GENE_ASSOCIATION: b4213 SUBSYSTEM: Nucleotide Salvage Pathway
reversible: false
product: 160178
reactant: 160166
name: 3 nucleotidase CMP periplasm
kinetic law: 160202

160190
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stoichiometry: 1.0
species: 179467

179467
type: Species
notes: FORMULA: HO4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphate

160154
type: SpeciesReference
stoichiometry: 1.0
species: 177631

177631
type: Species
notes: FORMULA: C9H12N3O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 3-cmp

160178
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stoichiometry: 1.0
species: 178337

178337
type: Species
notes: FORMULA: C9H13N3O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Cytidine

160166
type: SpeciesReference
stoichiometry: 1.0
species: 178739

185374
type: LocalParameter
value: 0.0

185373
type: LocalParameter
value: 0.0

185371
type: LocalParameter
value: 1000.0

185370
type: LocalParameter
value: 0.0

178836
type: Species
notes: FORMULA: C76H137N2O30P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: KDO-lipid-IV-A

179195
type: Species
notes: FORMULA: C11H14N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: NMN

184247
type: Reaction
name: phosphoenolpyruvate carboxylase
product: 286337
reversible: false
reactant: 286285
notes: GENE_ASSOCIATION: b3956 SUBSYSTEM: Anaplerotic Reactions
kinetic law: 286363
reactant: 286298
fast: false
product: 286350
product: 286324
reactant: 286311

286337
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stoichiometry: 1.0
species: 179241

179241
type: Species
notes: FORMULA: C4H2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Oxaloacetate

286285
type: SpeciesReference
stoichiometry: 1.0
species: 178278

178278
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: CO2

198337
type: LocalParameter
value: 0.0

198336
type: LocalParameter
value: 0.0

198335
type: LocalParameter
value: 1000.0

198334
type: LocalParameter
value: 0.0

286298
type: SpeciesReference
stoichiometry: 1.0
species: 178737

286350
type: SpeciesReference
stoichiometry: 1.0
species: 179463

286324
type: SpeciesReference
stoichiometry: 1.0
species: 178743

286311
type: SpeciesReference
stoichiometry: 1.0
species: 179379

179379
type: Species
notes: FORMULA: C3H2O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphoenolpyruvate

183392
type: Reaction
product: 256824
product: 256836
fast: false
reactant: 256812
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
name: Lysophospholipase L2 2 acylglycerophosphoglycerol n C181
reversible: false
reactant: 256800
kinetic law: 256860
product: 256848

256824
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stoichiometry: 1.0
species: 178588

178588
type: Species
notes: FORMULA: C6H14O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycerophosphoglycerol

256836
type: SpeciesReference
stoichiometry: 1.0
species: 178743

256812
type: SpeciesReference
stoichiometry: 1.0
species: 178737

256800
type: SpeciesReference
stoichiometry: 1.0
species: 177445

177445
type: Species
notes: FORMULA: C24H46O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C181

195487
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value: 0.0

195486
type: LocalParameter
value: 0.0

195484
type: LocalParameter
value: 1000.0

195483
type: LocalParameter
value: 0.0

256848
type: SpeciesReference
stoichiometry: 1.0
species: 179257

179257
type: Species
notes: FORMULA: C18H33O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: octadecenoate-n-C181

181365
type: Reaction
product: 193050
product: 193111
fast: false
product: 193086
kinetic law: 193123
reactant: 193026
product: 193074
name: coprogen Fe III reductase
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism
reactant: 193014
reversible: false

193050
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stoichiometry: 2.0
species: 178297

178297
type: Species
notes: FORMULA: C35H52N6O13
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: coprogen-unloaded-no-Fe-III-

193111
type: SpeciesReference
stoichiometry: 1.0
species: 179627

179627
type: Species
notes: FORMULA: C17H20N4O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Riboflavin

193086
type: SpeciesReference
stoichiometry: 2.0
species: 178743

188375
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value: 0.0

188372
type: LocalParameter
value: 0.0

188371
type: LocalParameter
value: 1000.0

188368
type: LocalParameter
value: 0.0

193026
type: SpeciesReference
stoichiometry: 1.0
species: 179613

179613
type: Species
notes: FORMULA: C17H22N4O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Reduced-riboflavin

193074
type: SpeciesReference
stoichiometry: 2.0
species: 178518

178518
type: Species
notes: FORMULA: Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Fe2

193014
type: SpeciesReference
stoichiometry: 2.0
species: 178294

178294
type: Species
notes: FORMULA: C35H52N6O13Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: coprogen

180882
type: Reaction
reversible: false
kinetic law: 168364
name: adenosine transport in via proton symport periplasm
reactant: 168316
product: 168340
product: 168352
fast: false
reactant: 168328
notes: GENE_ASSOCIATION: ( b2964 or b2393 ) SUBSYSTEM: Transport Inner Membrane

186131
type: LocalParameter
value: 0.0

186128
type: LocalParameter
value: 0.0

186125
type: LocalParameter
value: 1000.0

186122
type: LocalParameter
value: 0.0

168316
type: SpeciesReference
stoichiometry: 1.0
species: 178007

178007
type: Species
notes: FORMULA: C10H13N5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Adenosine

168340
type: SpeciesReference
stoichiometry: 1.0
species: 178004

178004
type: Species
notes: FORMULA: C10H13N5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Adenosine

168352
type: SpeciesReference
stoichiometry: 1.0
species: 178743

168328
type: SpeciesReference
stoichiometry: 1.0
species: 178745

181815
type: Reaction
kinetic law: 216499
reactant: 216487
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: GDP exchange

190905
type: LocalParameter
value: 0.0

190904
type: LocalParameter
value: 0.0

190901
type: LocalParameter
value: 1000.0

190900
type: LocalParameter
value: 0.0

216487
type: SpeciesReference
stoichiometry: 1.0
species: 178637

178637
type: Species
notes: FORMULA: C10H12N5O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: GDP

183569
type: Reaction
kinetic law: 260497
product: 260485
reactant: 260473
reactant: 260460
notes: GENE_ASSOCIATION: ( b3182 or b2328 or b2134 ) SUBSYSTEM: Murein Recycling
fast: false
reversible: false
name: murein D D endopeptidase murein4px4px4p periplasm

195904
type: LocalParameter
value: 0.0

195902
type: LocalParameter
value: 0.0

195900
type: LocalParameter
value: 1000.0

195898
type: LocalParameter
value: 0.0

260485
type: SpeciesReference
stoichiometry: 1.0
species: 179125

179125
type: Species
notes: FORMULA: C111H169N21O59
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--one-uncrosslinked-tetrapaptide--middle-of-chain

260473
type: SpeciesReference
stoichiometry: 1.0
species: 179129

179129
type: Species
notes: FORMULA: C111H167N21O58
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain

260460
type: SpeciesReference
stoichiometry: 1.0
species: 178739

184679
type: Reaction
kinetic law: 301856
product: 301832
fast: false
reactant: 301808
notes: GENE_ASSOCIATION: b1897 SUBSYSTEM: Alternate Carbon Metabolism
product: 301844
reversible: false
name: trehalose phosphatase
reactant: 301820

199993
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value: 0.0

199990
type: LocalParameter
value: 0.0

199987
type: LocalParameter
value: 1000.0

199986
type: LocalParameter
value: 0.0

301832
type: SpeciesReference
stoichiometry: 1.0
species: 179463

301808
type: SpeciesReference
stoichiometry: 1.0
species: 178737

301844
type: SpeciesReference
stoichiometry: 1.0
species: 179870

179870
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Trehalose

301820
type: SpeciesReference
stoichiometry: 1.0
species: 179867

179867
type: Species
notes: FORMULA: C12H21O14P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: alpha-alpha-Trehalose-6-phosphate

179295
type: Species
notes: FORMULA: C2H2NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Oxamate

181530
type: Reaction
notes: GENE_ASSOCIATION: b0031 SUBSYSTEM: Threonine and Lysine Metabolism
reactant: 205531
reactant: 205555
fast: false
reactant: 205543
product: 205579
kinetic law: 205591
product: 205567
name: dihydrodipicolinate reductase NADPH
reversible: false

205531
type: SpeciesReference
stoichiometry: 1.0
species: 177370

177370
type: Species
notes: FORMULA: C7H5NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-3-Dihydrodipicolinate

205555
type: SpeciesReference
stoichiometry: 1.0
species: 179173

179173
type: Species
notes: FORMULA: C21H26N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nicotinamide-adenine-dinucleotide-phosphate--reduced

205543
type: SpeciesReference
stoichiometry: 1.0
species: 178743

205579
type: SpeciesReference
stoichiometry: 1.0
species: 179803

179803
type: Species
notes: FORMULA: C7H7NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-3-4-5-Tetrahydrodipicolinate

188923
type: LocalParameter
value: 0.0

188922
type: LocalParameter
value: 0.0

188920
type: LocalParameter
value: 1000.0

188919
type: LocalParameter
value: 0.0

205567
type: SpeciesReference
stoichiometry: 1.0
species: 179171

179171
type: Species
notes: FORMULA: C21H25N7O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nicotinamide-adenine-dinucleotide-phosphate

184275
type: Reaction
kinetic law: 287550
product: 287538
reactant: 287526
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Phosphonate transport via diffusion extracellular to periplasm

198414
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value: 0.0

198413
type: LocalParameter
value: 0.0

198412
type: LocalParameter
value: 1000.0

198411
type: LocalParameter
value: -1000.0

287538
type: SpeciesReference
stoichiometry: 1.0
species: 179517

179517
type: Species
notes: FORMULA: HO3P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphonate

287526
type: SpeciesReference
stoichiometry: 1.0
species: 179515

179515
type: Species
notes: FORMULA: HO3P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Phosphonate

183434
type: Reaction
kinetic law: 257677
product: 257665
reactant: 257653
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: L lactate transport via diffusion extracellular to periplasm

195557
type: LocalParameter
value: 0.0

195556
type: LocalParameter
value: 0.0

195554
type: LocalParameter
value: 1000.0

195553
type: LocalParameter
value: -1000.0

257665
type: SpeciesReference
stoichiometry: 1.0
species: 178850

178850
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Lactate

257653
type: SpeciesReference
stoichiometry: 1.0
species: 178848

178848
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Lactate

179385
type: Species
notes: FORMULA: C34H66O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerol-ditetradecanoyl-n-C140

180435
type: Reaction
kinetic law: 159128
product: 159116
reactant: 159104
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm

185269
type: LocalParameter
value: 0.0

185268
type: LocalParameter
value: 0.0

185266
type: LocalParameter
value: 1000.0

185265
type: LocalParameter
value: -1000.0

159116
type: SpeciesReference
stoichiometry: 1.0
species: 177610

177610
type: Species
notes: FORMULA: C8H8O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 3-4-Dihydroxyphenylacetaldehyde

159104
type: SpeciesReference
stoichiometry: 1.0
species: 177607

177607
type: Species
notes: FORMULA: C8H8O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 3-4-Dihydroxyphenylacetaldehyde

177329
type: Species
notes: FORMULA: C10H11N5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 2-3-Cyclic-AMP

177849
type: Species
notes: FORMULA: C5H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Hydroxy-2-oxopentanoate

180609
type: Reaction
kinetic law: 162914
product: 162902
reactant: 162890
notes: GENE_ASSOCIATION: ( b0241 or b1377 or b0929 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: 5 Dehydro D gluconate transport via diffusion extracellular to periplasm

185565
type: LocalParameter
value: 0.0

185564
type: LocalParameter
value: 0.0

185563
type: LocalParameter
value: 1000.0

185561
type: LocalParameter
value: -1000.0

162902
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stoichiometry: 1.0
species: 177881

177881
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 5-Dehydro-D-gluconate

162890
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stoichiometry: 1.0
species: 177879

177879
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 5-Dehydro-D-gluconate

178646
type: Species
notes: FORMULA: C163H281N2O89P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A

184545
type: Reaction
kinetic law: 296181
product: 296169
reactant: 296156
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
reversible: true
name: SO2 transport via diffusion periplasm

199135
type: LocalParameter
value: 0.0

199133
type: LocalParameter
value: 0.0

199131
type: LocalParameter
value: 1000.0

199128
type: LocalParameter
value: -1000.0

296169
type: SpeciesReference
stoichiometry: 1.0
species: 179697

179697
type: Species
notes: FORMULA: O2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: sulfur-dioxide

296156
type: SpeciesReference
stoichiometry: 1.0
species: 179701

179701
type: Species
notes: FORMULA: O2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: sulfur-dioxide

180891
type: Reaction
kinetic law: 168532
reactant: 168484
reversible: false
reactant: 168472
fast: false
product: 168508
product: 168496
product: 168520
name: Adenosyl cobinamide kinase
notes: GENE_ASSOCIATION: b1993 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis

186159
type: LocalParameter
value: 0.0

186157
type: LocalParameter
value: 0.0

186155
type: LocalParameter
value: 1000.0

186152
type: LocalParameter
value: 0.0

168484
type: SpeciesReference
stoichiometry: 1.0
species: 178173

168472
type: SpeciesReference
stoichiometry: 1.0
species: 178008

178008
type: Species
notes: FORMULA: C58H84CoN16O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Adenosyl-cobinamide

168508
type: SpeciesReference
stoichiometry: 1.0
species: 178016

168496
type: SpeciesReference
stoichiometry: 1.0
species: 178010

178010
type: Species
notes: FORMULA: C58H83CoN16O14P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Adenosyl-cobinamide-phosphate

168520
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178378
type: Species
notes: FORMULA: C3H6O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dihydroxyacetone

178044
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: beta-Alanine

184107
type: Reaction
product: 280111
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport Inner Membrane
product: 280123
product: 280087
fast: false
name: phosphatidylglycerophosphate transport via ABC system n C141 periplasm
reactant: 280063
kinetic law: 280135
reactant: 280051
reactant: 280075
reversible: false
product: 280099

280111
type: SpeciesReference
stoichiometry: 1.0
species: 179419

179419
type: Species
notes: FORMULA: C34H61O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141

280123
type: SpeciesReference
stoichiometry: 1.0
species: 179463

280087
type: SpeciesReference
stoichiometry: 1.0
species: 178016

280063
type: SpeciesReference
stoichiometry: 1.0
species: 178737

197861
type: LocalParameter
value: 0.0

197860
type: LocalParameter
value: 0.0

197857
type: LocalParameter
value: 1000.0

197856
type: LocalParameter
value: 0.0

280051
type: SpeciesReference
stoichiometry: 1.0
species: 178173

280075
type: SpeciesReference
stoichiometry: 1.0
species: 179417

179417
type: Species
notes: FORMULA: C34H61O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141

280099
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178746
type: Species
notes: FORMULA: C192H333N2O101P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: hepta-acylated-core-oligosaccharide-lipid-A-E-coli

183611
type: Reaction
reactant: 261791
fast: false
reactant: 261803
reversible: false
kinetic law: 261875
product: 261863
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Inner Membrane
product: 261851
reactant: 261815
product: 261839
product: 261827
name: L methionine R oxide transport via ABC system periplasm

261791
type: SpeciesReference
stoichiometry: 1.0
species: 178173

261803
type: SpeciesReference
stoichiometry: 1.0
species: 178737

196051
type: LocalParameter
value: 0.0

196049
type: LocalParameter
value: 0.0

196047
type: LocalParameter
value: 1000.0

196045
type: LocalParameter
value: 0.0

261863
type: SpeciesReference
stoichiometry: 1.0
species: 179463

261851
type: SpeciesReference
stoichiometry: 1.0
species: 179000

179000
type: Species
notes: FORMULA: C5H11NO3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-methionine-R-sulfoxide

261815
type: SpeciesReference
stoichiometry: 1.0
species: 179004

179004
type: Species
notes: FORMULA: C5H11NO3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-methionine-R-sulfoxide

261839
type: SpeciesReference
stoichiometry: 1.0
species: 178743

261827
type: SpeciesReference
stoichiometry: 1.0
species: 178016

180957
type: Reaction
kinetic law: 169923
product: 169911
reactant: 169899
notes: GENE_ASSOCIATION: b3619 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
fast: false
reversible: false
name: ADP D glycero D manno heptose epimerase

186313
type: LocalParameter
value: 0.0

186311
type: LocalParameter
value: 0.0

186309
type: LocalParameter
value: 1000.0

186307
type: LocalParameter
value: 0.0

169911
type: SpeciesReference
stoichiometry: 1.0
species: 178020

178020
type: Species
notes: FORMULA: C17H25N5O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ADP-L-glycero-D-manno-heptose

169899
type: SpeciesReference
stoichiometry: 1.0
species: 178019

178019
type: Species
notes: FORMULA: C17H25N5O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ADP-D-glycero-D-manno-heptose

180657
type: Reaction
fast: false
reactant: 164015
kinetic law: 164063
product: 164039
reactant: 164027
name: Arbutin 6 phosphate glucohydrolase
reversible: false
product: 164051
notes: GENE_ASSOCIATION: b2901 SUBSYSTEM: Alternate Carbon Metabolism

164015
type: SpeciesReference
stoichiometry: 1.0
species: 178130

178130
type: Species
notes: FORMULA: C12H15O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Arbutin-6-phosphate

185645
type: LocalParameter
value: 0.0

185644
type: LocalParameter
value: 0.0

185642
type: LocalParameter
value: 1000.0

185641
type: LocalParameter
value: 0.0

164039
type: SpeciesReference
stoichiometry: 1.0
species: 178597

178597
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Glucose-6-phosphate

164027
type: SpeciesReference
stoichiometry: 1.0
species: 178737

164051
type: SpeciesReference
stoichiometry: 1.0
species: 178782

178782
type: Species
notes: FORMULA: C6H6O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hydroquinone

179137
type: Species
notes: FORMULA: C80H124N16O42
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain

180822
type: Reaction
product: 167172
name: acyl carrier protein synthase
product: 167184
product: 167196
reactant: 167160
reactant: 167148
fast: false
reversible: false
notes: GENE_ASSOCIATION: ( b2563 or b3475 ) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
kinetic law: 167208

167172
type: SpeciesReference
stoichiometry: 1.0
species: 177902

177902
type: Species
notes: FORMULA: C11H21N2O7PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: acyl-carrier-protein

167184
type: SpeciesReference
stoichiometry: 1.0
species: 178743

167196
type: SpeciesReference
stoichiometry: 1.0
species: 179341

179341
type: Species
notes: FORMULA: C10H11N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Adenosine-3-5-bisphosphate

167160
type: SpeciesReference
stoichiometry: 1.0
species: 178283

178283
type: Species
notes: FORMULA: C21H32N7O16P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Coenzyme-A

167148
type: SpeciesReference
stoichiometry: 1.0
species: 178119

178119
type: Species
notes: FORMULA: RHO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: apoprotein-acyl-carrier-protein

185976
type: LocalParameter
value: 0.0

185975
type: LocalParameter
value: 0.0

185974
type: LocalParameter
value: 1000.0

185972
type: LocalParameter
value: 0.0

179505
type: Species
notes: FORMULA: C34H38N4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Protoporphyrinogen-IX

182766
type: Reaction
kinetic law: 244292
product: 244280
reactant: 244268
notes: GENE_ASSOCIATION: b2344 SUBSYSTEM: Transport Outer Membrane
fast: false
reversible: false
name: Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm

194484
type: LocalParameter
value: 0.0

194477
type: LocalParameter
value: 0.0

194475
type: LocalParameter
value: 1000.0

194474
type: LocalParameter
value: 0.0

244280
type: SpeciesReference
stoichiometry: 1.0
species: 178755

178755
type: Species
notes: FORMULA: C16H29O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Hexadecenoate-n-C161

244268
type: SpeciesReference
stoichiometry: 1.0
species: 178754

178754
type: Species
notes: FORMULA: C16H29O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Hexadecenoate-n-C161

182631
type: Reaction
reactant: 241586
reactant: 241610
notes: GENE_ASSOCIATION: b2988 SUBSYSTEM: Arginine and Proline Metabolism
name: Glutathionylspermidine synthetase
reactant: 241598
reversible: false
product: 241658
kinetic law: 241670
product: 241634
product: 241622
fast: false
product: 241646

241586
type: SpeciesReference
stoichiometry: 1.0
species: 178173

241610
type: SpeciesReference
stoichiometry: 1.0
species: 179715

179715
type: Species
notes: FORMULA: C7H22N3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Spermidine

241598
type: SpeciesReference
stoichiometry: 1.0
species: 178720

178720
type: Species
notes: FORMULA: C10H16N3O6S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Reduced-glutathione

241658
type: SpeciesReference
stoichiometry: 1.0
species: 179463

193891
type: LocalParameter
value: 0.0

193890
type: LocalParameter
value: 0.0

193888
type: LocalParameter
value: 1000.0

193887
type: LocalParameter
value: 0.0

241634
type: SpeciesReference
stoichiometry: 1.0
species: 178726

178726
type: Species
notes: FORMULA: C17H36N6O5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glutathionylspermidine

241622
type: SpeciesReference
stoichiometry: 1.0
species: 178016

241646
type: SpeciesReference
stoichiometry: 1.0
species: 178743

177191
type: Species
notes: FORMULA: C35H64O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161

183589
type: Reaction
name: melibiose transport in via antiport periplasm
product: 261102
fast: false
reversible: false
reactant: 261078
product: 261114
reactant: 261090
notes: GENE_ASSOCIATION: b1528 SUBSYSTEM: Transport Inner Membrane
kinetic law: 261126

261102
type: SpeciesReference
stoichiometry: 1.0
species: 178743

261078
type: SpeciesReference
stoichiometry: 1.0
species: 178745

261114
type: SpeciesReference
stoichiometry: 1.0
species: 178982

178982
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Melibiose

261090
type: SpeciesReference
stoichiometry: 1.0
species: 178978

178978
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Melibiose

195974
type: LocalParameter
value: 0.0

195972
type: LocalParameter
value: 0.0

195970
type: LocalParameter
value: 1000.0

195968
type: LocalParameter
value: 0.0

181685
type: Reaction
kinetic law: 213776
reactant: 213764
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: N Acetyl D mannosamine exchange

189982
type: LocalParameter
value: 0.0

189979
type: LocalParameter
value: 0.0

189976
type: LocalParameter
value: 1000.0

189973
type: LocalParameter
value: 0.0

213764
type: SpeciesReference
stoichiometry: 1.0
species: 177969

177969
type: Species
notes: FORMULA: C8H15NO6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: N-Acetyl-D-mannosamine

179327
type: Species
notes: FORMULA: C8H7O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phenylacetic-acid

183185
type: Reaction
name: Lysophospholipase L1 2 acylglycerophosphotidate n C160 periplasm
reactant: 253189
kinetic law: 253250
product: 253238
product: 253226
fast: false
product: 253214
reactant: 253202
reversible: false
notes: GENE_ASSOCIATION: b0494 SUBSYSTEM: Glycerophospholipid Metabolism

253189
type: SpeciesReference
stoichiometry: 1.0
species: 177299

177299
type: Species
notes: FORMULA: C19H37O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-hexadecanoyl-sn-glycerol-3-phosphate

195220
type: LocalParameter
value: 0.0

195218
type: LocalParameter
value: 0.0

195217
type: LocalParameter
value: 1000.0

195216
type: LocalParameter
value: 0.0

253238
type: SpeciesReference
stoichiometry: 1.0
species: 178752

178752
type: Species
notes: FORMULA: C16H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Hexadecanoate-n-C160

253226
type: SpeciesReference
stoichiometry: 1.0
species: 178745

253214
type: SpeciesReference
stoichiometry: 1.0
species: 178692

253202
type: SpeciesReference
stoichiometry: 1.0
species: 178739

183933
type: Reaction
reactant: 271917
reactant: 271904
reversible: false
notes: GENE_ASSOCIATION: b2954 SUBSYSTEM: Nucleotide Salvage Pathway
fast: false
name: Nucleoside triphosphate pyrophosphorylase itp
product: 271942
product: 271929
kinetic law: 271968
product: 271955

271917
type: SpeciesReference
stoichiometry: 1.0
species: 178820

178820
type: Species
notes: FORMULA: C10H11N4O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ITP

271904
type: SpeciesReference
stoichiometry: 1.0
species: 178737

271942
type: SpeciesReference
stoichiometry: 1.0
species: 178804

178804
type: Species
notes: FORMULA: C10H11N4O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: IMP

271929
type: SpeciesReference
stoichiometry: 1.0
species: 178743

197156
type: LocalParameter
value: 0.0

197155
type: LocalParameter
value: 0.0

197153
type: LocalParameter
value: 1000.0

197152
type: LocalParameter
value: 0.0

271955
type: SpeciesReference
stoichiometry: 1.0
species: 179501

183050
type: Reaction
kinetic law: 250300
product: 250288
reactant: 250276
reactant: 250264
notes: GENE_ASSOCIATION: ( b2342 or b3845 ) SUBSYSTEM: Membrane Lipid Metabolism
fast: false
reversible: false
name: 3 ketoacyl CoA thiolase

194993
type: LocalParameter
value: 0.0

194992
type: LocalParameter
value: 0.0

194990
type: LocalParameter
value: 1000.0

194989
type: LocalParameter
value: 0.0

250288
type: SpeciesReference
stoichiometry: 2.0
species: 177941

177941
type: Species
notes: FORMULA: C23H34N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetyl-CoA

250276
type: SpeciesReference
stoichiometry: 1.0
species: 178283

250264
type: SpeciesReference
stoichiometry: 1.0
species: 177921

177921
type: Species
notes: FORMULA: C25H36N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetoacetyl-CoA

178556
type: Species
notes: FORMULA: CH1O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Formate

179976
type: Species
notes: FORMULA: C60H100N1O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose

179675
type: Species
notes: FORMULA: C3H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Serine

178466
type: Species
notes: FORMULA: C16H22N2O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dTDP-4-dehydro-6-deoxy-D-glucose

180030
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: UDPgalactose

181836
type: Reaction
kinetic law: 216839
reactant: 216827
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Glycolate exchange

190996
type: LocalParameter
value: 0.0

190995
type: LocalParameter
value: 0.0

190993
type: LocalParameter
value: 1000.0

190992
type: LocalParameter
value: 0.0

216827
type: SpeciesReference
stoichiometry: 1.0
species: 178700

178700
type: Species
notes: FORMULA: C2H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Glycolate

178834
type: Species
notes: FORMULA: C8H13O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Deoxy-D-manno-2-octulosonate

184296
type: Reaction
fast: false
reactant: 288553
notes: GENE_ASSOCIATION: b4111 SUBSYSTEM: Transport Inner Membrane
kinetic law: 288589
name: L proline reversible transport via proton symport periplasm
product: 288577
reactant: 288541
reversible: true
product: 288565

288553
type: SpeciesReference
stoichiometry: 1.0
species: 179535

179535
type: Species
notes: FORMULA: C5H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Proline

198470
type: LocalParameter
value: 0.0

198469
type: LocalParameter
value: 0.0

198468
type: LocalParameter
value: 1000.0

198467
type: LocalParameter
value: -1000.0

288577
type: SpeciesReference
stoichiometry: 1.0
species: 179531

179531
type: Species
notes: FORMULA: C5H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Proline

288541
type: SpeciesReference
stoichiometry: 1.0
species: 178745

288565
type: SpeciesReference
stoichiometry: 1.0
species: 178743

183455
type: Reaction
reversible: true
name: maltose O acetyltransferase
notes: GENE_ASSOCIATION: b0459 SUBSYSTEM: Alternate Carbon Metabolism
product: 258099
reactant: 258087
kinetic law: 258124
fast: false
product: 258111
reactant: 258075

258099
type: SpeciesReference
stoichiometry: 1.0
species: 177966

177966
type: Species
notes: FORMULA: C14H24O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetyl-maltose

258087
type: SpeciesReference
stoichiometry: 1.0
species: 178924

178924
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Maltose

195592
type: LocalParameter
value: 0.0

195591
type: LocalParameter
value: 0.0

195589
type: LocalParameter
value: 1000.0

195588
type: LocalParameter
value: -1000.0

258111
type: SpeciesReference
stoichiometry: 1.0
species: 178283

258075
type: SpeciesReference
stoichiometry: 1.0
species: 177941

178566
type: Species
notes: FORMULA: C12H25N2O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: fructoselysine

183017
type: Reaction
kinetic law: 249529
product: 249517
product: 249505
reactant: 249493
notes: GENE_ASSOCIATION: ( b0071 and b0072 ) SUBSYSTEM: Valine Leucine and Isoleucine Metabolism
fast: false
reversible: true
name: 3 isopropylmalate dehydratase

194938
type: LocalParameter
value: 0.0

194937
type: LocalParameter
value: 0.0

194935
type: LocalParameter
value: 1000.0

194934
type: LocalParameter
value: -1000.0

249517
type: SpeciesReference
stoichiometry: 1.0
species: 178737

249505
type: SpeciesReference
stoichiometry: 1.0
species: 177526

177526
type: Species
notes: FORMULA: C7H8O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Isopropylmaleate

249493
type: SpeciesReference
stoichiometry: 1.0
species: 177620

177620
type: Species
notes: FORMULA: C7H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Carboxy-2-hydroxy-4-methylpentanoate

177448
type: Species
notes: FORMULA: C24H46O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C181

182244
type: Reaction
product: 228482
notes: GENE_ASSOCIATION: b3288 SUBSYSTEM: tRNA Charging
kinetic law: 228494
reactant: 228446
fast: false
name: Methionyl tRNA formyltransferase
reversible: false
reactant: 228434
product: 228470
product: 228458

228482
type: SpeciesReference
stoichiometry: 1.0
species: 179807

179807
type: Species
notes: FORMULA: C19H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-6-7-8-Tetrahydrofolate

192268
type: LocalParameter
value: 0.0

192267
type: LocalParameter
value: 0.0

192265
type: LocalParameter
value: 1000.0

192264
type: LocalParameter
value: 0.0

228446
type: SpeciesReference
stoichiometry: 1.0
species: 179012

179012
type: Species
notes: FORMULA: C5H10NOSR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Methionyl-tRNA-Met

228434
type: SpeciesReference
stoichiometry: 1.0
species: 177172

177172
type: Species
notes: FORMULA: C20H21N7O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 10-Formyltetrahydrofolate

228470
type: SpeciesReference
stoichiometry: 1.0
species: 178743

228458
type: SpeciesReference
stoichiometry: 1.0
species: 178553

178553
type: Species
notes: FORMULA: C6H9NO2SR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Formylmethionyl-tRNA

178656
type: Species
notes: FORMULA: C6H11O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Gluconate

183767
type: Reaction
product: 266426
name: NAD transhydrogenase
product: 266438
kinetic law: 266450
fast: false
reactant: 266402
notes: GENE_ASSOCIATION: ( b3962 or ( b1602 and b1603 ) ) SUBSYSTEM: Oxidative Phosphorylation
reactant: 266414
reversible: false

266426
type: SpeciesReference
stoichiometry: 1.0
species: 179169

266438
type: SpeciesReference
stoichiometry: 1.0
species: 179171

196611
type: LocalParameter
value: 0.0

196609
type: LocalParameter
value: 0.0

196607
type: LocalParameter
value: 1000.0

196606
type: LocalParameter
value: 0.0

266402
type: SpeciesReference
stoichiometry: 1.0
species: 179167

266414
type: SpeciesReference
stoichiometry: 1.0
species: 179173

178460
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: periplasmic-disulfide-isomerasethiol-disulphide-oxidase-oxidized

181179
type: Reaction
reversible: false
product: 176952
product: 176940
product: 176904
reactant: 176855
product: 176928
name: asparagine synthase glutamine hydrolysing
notes: GENE_ASSOCIATION: b0674 SUBSYSTEM: Alanine and Aspartate Metabolism
product: 176916
kinetic law: 176964
fast: false
reactant: 176892
reactant: 176867
reactant: 176880

176952
type: SpeciesReference
stoichiometry: 1.0
species: 179501

176940
type: SpeciesReference
stoichiometry: 1.0
species: 178743

176904
type: SpeciesReference
stoichiometry: 1.0
species: 178085

178085
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: AMP

176855
type: SpeciesReference
stoichiometry: 1.0
species: 178164

178164
type: Species
notes: FORMULA: C4H6NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Aspartate

176928
type: SpeciesReference
stoichiometry: 1.0
species: 178673

178673
type: Species
notes: FORMULA: C5H8NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Glutamate

176916
type: SpeciesReference
stoichiometry: 1.0
species: 178152

178152
type: Species
notes: FORMULA: C4H8N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Asparagine

187642
type: LocalParameter
value: 0.0

187640
type: LocalParameter
value: 0.0

187639
type: LocalParameter
value: 1000.0

187637
type: LocalParameter
value: 0.0

176892
type: SpeciesReference
stoichiometry: 1.0
species: 178737

176867
type: SpeciesReference
stoichiometry: 1.0
species: 178173

176880
type: SpeciesReference
stoichiometry: 1.0
species: 178665

178665
type: Species
notes: FORMULA: C5H10N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Glutamine

179147
type: Species
notes: FORMULA: N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nitrous-oxide

178560
type: Species
notes: FORMULA: C10H13N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-Formamido-1-5-phospho-D-ribosyl-imidazole-4-carboxamide

180678
type: Reaction
name: acetoacetate transport via proton symport periplasm
notes: GENE_ASSOCIATION: b2223 SUBSYSTEM: Transport Inner Membrane
product: 164450
product: 164462
fast: false
reversible: true
kinetic law: 164474
reactant: 164426
reactant: 164438

164450
type: SpeciesReference
stoichiometry: 1.0
species: 177930

177930
type: Species
notes: FORMULA: C4H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetoacetate

164462
type: SpeciesReference
stoichiometry: 1.0
species: 178743

185680
type: LocalParameter
value: 0.0

185679
type: LocalParameter
value: 0.0

185677
type: LocalParameter
value: 1000.0

185676
type: LocalParameter
value: -1000.0

164426
type: SpeciesReference
stoichiometry: 1.0
species: 177933

177933
type: Species
notes: FORMULA: C4H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Acetoacetate

164438
type: SpeciesReference
stoichiometry: 1.0
species: 178745

184569
type: Reaction
reactant: 297174
reactant: 297162
name: Succintate transport via proton symport 3 H periplasm
notes: GENE_ASSOCIATION: ( b4123 or b4138 ) SUBSYSTEM: Transport Inner Membrane
kinetic law: 297210
fast: false
product: 297186
reversible: false
product: 297198

297174
type: SpeciesReference
stoichiometry: 1.0
species: 179735

179735
type: Species
notes: FORMULA: C4H4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Succinate

297162
type: SpeciesReference
stoichiometry: 3.0
species: 178745

199265
type: LocalParameter
value: 0.0

199262
type: LocalParameter
value: 0.0

199260
type: LocalParameter
value: 1000.0

199257
type: LocalParameter
value: 0.0

297186
type: SpeciesReference
stoichiometry: 3.0
species: 178743

297198
type: SpeciesReference
stoichiometry: 1.0
species: 179731

179731
type: Species
notes: FORMULA: C4H4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Succinate

182957
type: Reaction
fast: false
reactant: 248311
name: Isoleucyl tRNA synthetase
kinetic law: 248383
reversible: false
reactant: 248335
notes: GENE_ASSOCIATION: b0026 SUBSYSTEM: tRNA Charging
product: 248359
product: 248371
product: 248347
reactant: 248323

248311
type: SpeciesReference
stoichiometry: 1.0
species: 178173

194838
type: LocalParameter
value: 0.0

194837
type: LocalParameter
value: 0.0

194835
type: LocalParameter
value: 1000.0

194834
type: LocalParameter
value: 0.0

248335
type: SpeciesReference
stoichiometry: 1.0
species: 179894

179894
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-Ile

248359
type: SpeciesReference
stoichiometry: 1.0
species: 178802

178802
type: Species
notes: FORMULA: C6H12NOR
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Isoleucyl-tRNA-Ile

248371
type: SpeciesReference
stoichiometry: 1.0
species: 179501

248347
type: SpeciesReference
stoichiometry: 1.0
species: 178085

248323
type: SpeciesReference
stoichiometry: 1.0
species: 178799

178799
type: Species
notes: FORMULA: C6H13NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Isoleucine

182478
type: Reaction
reversible: true
product: 237876
kinetic law: 237888
reactant: 237839
reactant: 237851
product: 237864
name: glycine C acetyltransferase
fast: false
notes: GENE_ASSOCIATION: b3617 SUBSYSTEM: Glycine and Serine Metabolism

237876
type: SpeciesReference
stoichiometry: 1.0
species: 178283

193551
type: LocalParameter
value: 0.0

193549
type: LocalParameter
value: 0.0

193547
type: LocalParameter
value: 1000.0

193546
type: LocalParameter
value: -1000.0

237839
type: SpeciesReference
stoichiometry: 1.0
species: 177941

237851
type: SpeciesReference
stoichiometry: 1.0
species: 178679

178679
type: Species
notes: FORMULA: C2H5NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycine

237864
type: SpeciesReference
stoichiometry: 1.0
species: 177457

177457
type: Species
notes: FORMULA: C4H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-2-Amino-3-oxobutanoate

180843
type: Reaction
fast: false
kinetic law: 167596
reactant: 167548
product: 167572
name: Adenosine deaminase
reactant: 167560
reactant: 167536
product: 167584
notes: GENE_ASSOCIATION: b1623 SUBSYSTEM: Nucleotide Salvage Pathway
reversible: false

186011
type: LocalParameter
value: 0.0

186010
type: LocalParameter
value: 0.0

186009
type: LocalParameter
value: 1000.0

186007
type: LocalParameter
value: 0.0

167548
type: SpeciesReference
stoichiometry: 1.0
species: 178737

167572
type: SpeciesReference
stoichiometry: 1.0
species: 178813

178813
type: Species
notes: FORMULA: C10H12N4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Inosine

167560
type: SpeciesReference
stoichiometry: 1.0
species: 178743

167536
type: SpeciesReference
stoichiometry: 1.0
species: 178004

167584
type: SpeciesReference
stoichiometry: 1.0
species: 179177

179177
type: Species
notes: FORMULA: H4N
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Ammonium

179878
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-Arg

184772
type: Reaction
product: 305689
reactant: 305653
fast: false
product: 305677
name: UDP L Ara4N formyltransferase
reactant: 305641
kinetic law: 305701
product: 305665
notes: GENE_ASSOCIATION: b2255 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
reversible: false

305689
type: SpeciesReference
stoichiometry: 1.0
species: 180008

180008
type: Species
notes: FORMULA: C15H21N3O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: uridine-5--diphospho-beta-4-deoxy-4-formamido-L-arabinose

305653
type: SpeciesReference
stoichiometry: 1.0
species: 180010

180010
type: Species
notes: FORMULA: C14H22N3O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: uridine-5--diphospho-beta-4-deoxy-4-amino-L-arabinose

305677
type: SpeciesReference
stoichiometry: 1.0
species: 179807

305641
type: SpeciesReference
stoichiometry: 1.0
species: 177172

200473
type: LocalParameter
value: 0.0

200470
type: LocalParameter
value: 0.0

200469
type: LocalParameter
value: 1000.0

200466
type: LocalParameter
value: 0.0

305665
type: SpeciesReference
stoichiometry: 1.0
species: 178743

179441
type: Species
notes: FORMULA: C9H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Phenylalanine

184735
type: Reaction
fast: false
kinetic law: 304091
name: UDP N acetylglucosamine diphosphorylase
notes: GENE_ASSOCIATION: b3730 SUBSYSTEM: Cell Envelope Biosynthesis
reactant: 304031
product: 304079
reactant: 304043
product: 304067
reactant: 304055
reversible: false

200287
type: LocalParameter
value: 0.0

200284
type: LocalParameter
value: 0.0

200281
type: LocalParameter
value: 1000.0

200280
type: LocalParameter
value: 0.0

304031
type: SpeciesReference
stoichiometry: 1.0
species: 177953

177953
type: Species
notes: FORMULA: C8H14NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-D-glucosamine-1-phosphate

304079
type: SpeciesReference
stoichiometry: 1.0
species: 179982

179982
type: Species
notes: FORMULA: C17H25N3O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-N-acetyl-D-glucosamine

304043
type: SpeciesReference
stoichiometry: 1.0
species: 178743

304067
type: SpeciesReference
stoichiometry: 1.0
species: 179501

304055
type: SpeciesReference
stoichiometry: 1.0
species: 180158

180158
type: Species
notes: FORMULA: C9H11N2O15P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UTP

184435
type: Reaction
product: 291548
product: 291536
kinetic law: 291560
name: pyrimidine nucleoside phosphorylase uracil
reversible: true
reactant: 291524
reactant: 291512
fast: false
notes: GENE_ASSOCIATION: b3831 SUBSYSTEM: Nucleotide Salvage Pathway

291548
type: SpeciesReference
stoichiometry: 1.0
species: 180125

180125
type: Species
notes: FORMULA: C4H4N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Uracil

291536
type: SpeciesReference
stoichiometry: 1.0
species: 179603

179603
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: alpha-D-Ribose-1-phosphate

198691
type: LocalParameter
value: 0.0

198690
type: LocalParameter
value: 0.0

198689
type: LocalParameter
value: 1000.0

198687
type: LocalParameter
value: -1000.0

291524
type: SpeciesReference
stoichiometry: 1.0
species: 180149

180149
type: Species
notes: FORMULA: C9H12N2O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Uridine

291512
type: SpeciesReference
stoichiometry: 1.0
species: 179463

183627
type: Reaction
kinetic law: 262369
product: 262357
reactant: 262345
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: magnesium Mg2 transport via diffusion extracellular to periplasm

196107
type: LocalParameter
value: 0.0

196105
type: LocalParameter
value: 0.0

196103
type: LocalParameter
value: 1000.0

196101
type: LocalParameter
value: -1000.0

262357
type: SpeciesReference
stoichiometry: 1.0
species: 179018

179018
type: Species
notes: FORMULA: Mg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: magnesium

262345
type: SpeciesReference
stoichiometry: 1.0
species: 179016

179016
type: Species
notes: FORMULA: Mg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: magnesium

177358
type: Species
notes: FORMULA: C3H9N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-3-diaminopropionate

181629
type: Reaction
kinetic law: 211686
product: 211674
product: 211662
reactant: 211650
notes: GENE_ASSOCIATION: ( b3846 or b2341 ) SUBSYSTEM: Membrane Lipid Metabolism
fast: false
reversible: true
name: 3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA

189457
type: LocalParameter
value: 0.0

189455
type: LocalParameter
value: 0.0

189453
type: LocalParameter
value: 1000.0

189450
type: LocalParameter
value: -1000.0

211674
type: SpeciesReference
stoichiometry: 1.0
species: 178737

211662
type: SpeciesReference
stoichiometry: 1.0
species: 178175

178175
type: Species
notes: FORMULA: C25H36N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Crotonoyl-CoA

211650
type: SpeciesReference
stoichiometry: 1.0
species: 177655

177655
type: Species
notes: FORMULA: C25H38N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-3-Hydroxybutanoyl-CoA

182655
type: Reaction
reactant: 242178
product: 242228
reactant: 242191
kinetic law: 242240
notes: GENE_ASSOCIATION: b2153 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
name: GTP cyclohydrolase I
reversible: false
fast: false
product: 242216
product: 242204

242178
type: SpeciesReference
stoichiometry: 1.0
species: 178723

242228
type: SpeciesReference
stoichiometry: 1.0
species: 178743

242191
type: SpeciesReference
stoichiometry: 1.0
species: 178737

193935
type: LocalParameter
value: 0.0

193934
type: LocalParameter
value: 0.0

193932
type: LocalParameter
value: 1000.0

193931
type: LocalParameter
value: 0.0

242216
type: SpeciesReference
stoichiometry: 1.0
species: 178556

242204
type: SpeciesReference
stoichiometry: 1.0
species: 178034

178034
type: Species
notes: FORMULA: C9H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Amino-4-hydroxy-6-erythro-1-2-3-trihydroxypropyl-dihydropteridine-triphosphate

178160
type: Species
notes: FORMULA: AsO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: arsenite

181121
type: Reaction
kinetic law: 174989
product: 174976
reactant: 174964
notes: GENE_ASSOCIATION: b0062 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: true
name: L arabinose isomerase

187482
type: LocalParameter
value: 0.0

187481
type: LocalParameter
value: 0.0

187479
type: LocalParameter
value: 1000.0

187478
type: LocalParameter
value: -1000.0

174976
type: SpeciesReference
stoichiometry: 1.0
species: 179615

179615
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Ribulose

174964
type: SpeciesReference
stoichiometry: 1.0
species: 178124

178124
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Arabinose

178718
type: Species
notes: FORMULA: C20H30N6O12S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Oxidized-glutathione

183038
type: Reaction
reactant: 249961
notes: GENE_ASSOCIATION: b3774 SUBSYSTEM: Valine Leucine and Isoleucine Metabolism
kinetic law: 250009
product: 249973
fast: false
product: 249985
reactant: 249949
product: 249997
name: ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate
reversible: true

249961
type: SpeciesReference
stoichiometry: 1.0
species: 179171

194973
type: LocalParameter
value: 0.0

194972
type: LocalParameter
value: 0.0

194970
type: LocalParameter
value: 1000.0

194969
type: LocalParameter
value: -1000.0

249973
type: SpeciesReference
stoichiometry: 1.0
species: 178061

178061
type: Species
notes: FORMULA: C5H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-2-Acetolactate

249985
type: SpeciesReference
stoichiometry: 1.0
species: 178743

249949
type: SpeciesReference
stoichiometry: 1.0
species: 177372

177372
type: Species
notes: FORMULA: C5H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-2-3-Dihydroxy-3-methylbutanoate

249997
type: SpeciesReference
stoichiometry: 1.0
species: 179173

181789
type: Reaction
kinetic law: 215975
reactant: 215963
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: D Fructuronate exchange

190759
type: LocalParameter
value: 0.0

190756
type: LocalParameter
value: 0.0

190755
type: LocalParameter
value: 1000.0

190752
type: LocalParameter
value: 0.0

215963
type: SpeciesReference
stoichiometry: 1.0
species: 178570

178570
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Fructuronate

179882
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-Asp

182162
type: Reaction
notes: GENE_ASSOCIATION: b0935 SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
reactant: 224413
kinetic law: 224485
name: FMNH2 dependent monooxygenase methanesulfonate
product: 224473
product: 224461
reactant: 224389
reversible: false
product: 224449
reactant: 224401
product: 224425
product: 224437

224413
type: SpeciesReference
stoichiometry: 1.0
species: 179229

191986
type: LocalParameter
value: 0.0

191985
type: LocalParameter
value: 0.0

191984
type: LocalParameter
value: 1000.0

191982
type: LocalParameter
value: 0.0

224473
type: SpeciesReference
stoichiometry: 1.0
species: 179703

179703
type: Species
notes: FORMULA: O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Sulfite

224461
type: SpeciesReference
stoichiometry: 1.0
species: 178743

224389
type: SpeciesReference
stoichiometry: 1.0
species: 178555

178555
type: Species
notes: FORMULA: C17H21N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Reduced-FMN

224449
type: SpeciesReference
stoichiometry: 1.0
species: 178737

224401
type: SpeciesReference
stoichiometry: 1.0
species: 179107

179107
type: Species
notes: FORMULA: CH3O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: methanesulfonate

224425
type: SpeciesReference
stoichiometry: 1.0
species: 178512

178512
type: Species
notes: FORMULA: CH2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Formaldehyde

224437
type: SpeciesReference
stoichiometry: 1.0
species: 178554

178554
type: Species
notes: FORMULA: C17H19N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: FMN

183681
type: Reaction
kinetic law: 263854
product: 263842
reactant: 263830
notes: GENE_ASSOCIATION: SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: true
name: methylmalonyl CoA epimerase

196300
type: LocalParameter
value: 0.0

196298
type: LocalParameter
value: 0.0

196296
type: LocalParameter
value: 1000.0

196294
type: LocalParameter
value: -1000.0

263842
type: SpeciesReference
stoichiometry: 1.0
species: 179078

179078
type: Species
notes: FORMULA: C25H35N7O19P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-Methylmalonyl-CoA

263830
type: SpeciesReference
stoichiometry: 1.0
species: 179030

179030
type: Species
notes: FORMULA: C25H35N7O19P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-Methylmalonyl-CoA

181654
type: Reaction
kinetic law: 213028
product: 213015
reactant: 213003
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: ethanol transport via diffusion extracellular to periplasm

189672
type: LocalParameter
value: 0.0

189669
type: LocalParameter
value: 0.0

189666
type: LocalParameter
value: 1000.0

189663
type: LocalParameter
value: -1000.0

213015
type: SpeciesReference
stoichiometry: 1.0
species: 178505

178505
type: Species
notes: FORMULA: C2H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Ethanol

213003
type: SpeciesReference
stoichiometry: 1.0
species: 178504

178504
type: Species
notes: FORMULA: C2H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Ethanol

182204
type: Reaction
reversible: false
reactant: 226538
kinetic law: 226578
product: 226564
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism
name: ferrichrome minus Fe secretion to extracellular
product: 226551
fast: false
reactant: 226525

226538
type: SpeciesReference
stoichiometry: 1.0
species: 178745

192128
type: LocalParameter
value: 0.0

192127
type: LocalParameter
value: 0.0

192126
type: LocalParameter
value: 1000.0

192124
type: LocalParameter
value: 0.0

226564
type: SpeciesReference
stoichiometry: 1.0
species: 178743

226551
type: SpeciesReference
stoichiometry: 1.0
species: 178539

178539
type: Species
notes: FORMULA: C27H42N9O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Ferrichrome-minus-Fe-III

226525
type: SpeciesReference
stoichiometry: 1.0
species: 178540

178540
type: Species
notes: FORMULA: C27H42N9O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Ferrichrome-minus-Fe-III

183902
type: Reaction
reactant: 270622
product: 270646
name: 5 nucleotidase GMP
notes: GENE_ASSOCIATION: ( b4055 or b0480 ) SUBSYSTEM: Nucleotide Salvage Pathway
kinetic law: 270659
reversible: false
fast: false
product: 270634
reactant: 270610

270622
type: SpeciesReference
stoichiometry: 1.0
species: 178739

270646
type: SpeciesReference
stoichiometry: 1.0
species: 179467

197051
type: LocalParameter
value: 0.0

197049
type: LocalParameter
value: 0.0

197048
type: LocalParameter
value: 1000.0

197046
type: LocalParameter
value: 0.0

270634
type: SpeciesReference
stoichiometry: 1.0
species: 178716

178716
type: Species
notes: FORMULA: C10H13N5O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Guanosine

270610
type: SpeciesReference
stoichiometry: 1.0
species: 178709

178709
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: GMP

181655
type: Reaction
kinetic law: 213052
reactant: 213040
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: R Propane 1 2 diol exchange

189682
type: LocalParameter
value: 0.0

189679
type: LocalParameter
value: 0.0

189676
type: LocalParameter
value: 1000.0

189673
type: LocalParameter
value: 0.0

213040
type: SpeciesReference
stoichiometry: 1.0
species: 177207

177207
type: Species
notes: FORMULA: C3H8O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: R-Propane-1-2-diol

180405
type: Reaction
reactant: 158313
product: 158349
notes: GENE_ASSOCIATION: b2836 SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 158337
fast: false
reversible: false
reactant: 158325
product: 158373
product: 158361
kinetic law: 158386
name: 2 acyl glycerophospho glycerol acyltransferase n C141

158313
type: SpeciesReference
stoichiometry: 1.0
species: 177429

177429
type: Species
notes: FORMULA: C20H38O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C141

158349
type: SpeciesReference
stoichiometry: 1.0
species: 178085

158337
type: SpeciesReference
stoichiometry: 1.0
species: 179938

179938
type: Species
notes: FORMULA: C14H25O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tetradecenoate-n-C141

158325
type: SpeciesReference
stoichiometry: 1.0
species: 178173

158373
type: SpeciesReference
stoichiometry: 1.0
species: 179501

158361
type: SpeciesReference
stoichiometry: 1.0
species: 179389

179389
type: Species
notes: FORMULA: C34H62O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerol-ditetradec-7-enoyl-n-C141

185219
type: LocalParameter
value: 0.0

185218
type: LocalParameter
value: 0.0

185216
type: LocalParameter
value: 1000.0

185215
type: LocalParameter
value: 0.0

184792
type: Reaction
notes: GENE_ASSOCIATION: b2498 SUBSYSTEM: Nucleotide Salvage Pathway
kinetic law: 306508
name: uracil phosphoribosyltransferase
product: 306496
reversible: false
reactant: 306471
reactant: 306459
product: 306484
fast: false

200563
type: LocalParameter
value: 0.0

200562
type: LocalParameter
value: 0.0

200559
type: LocalParameter
value: 1000.0

200558
type: LocalParameter
value: 0.0

306496
type: SpeciesReference
stoichiometry: 1.0
species: 180046

180046
type: Species
notes: FORMULA: C9H11N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UMP

306471
type: SpeciesReference
stoichiometry: 1.0
species: 180125

306459
type: SpeciesReference
stoichiometry: 1.0
species: 179545

179545
type: Species
notes: FORMULA: C5H8O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-Phospho-alpha-D-ribose-1-diphosphate

306484
type: SpeciesReference
stoichiometry: 1.0
species: 179501

178902
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Lyxose

181520
type: Reaction
kinetic law: 204999
product: 204987
product: 204975
reactant: 204963
notes: GENE_ASSOCIATION: b3771 SUBSYSTEM: Valine Leucine and Isoleucine Metabolism
fast: false
reversible: false
name: dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate

188879
type: LocalParameter
value: 0.0

188878
type: LocalParameter
value: 0.0

188877
type: LocalParameter
value: 1000.0

188876
type: LocalParameter
value: 0.0

204987
type: SpeciesReference
stoichiometry: 1.0
species: 178737

204975
type: SpeciesReference
stoichiometry: 1.0
species: 177788

177788
type: Species
notes: FORMULA: C5H7O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Methyl-2-oxobutanoate

204963
type: SpeciesReference
stoichiometry: 1.0
species: 177372

183047
type: Reaction
reversible: false
product: 250240
reactant: 250202
fast: false
reactant: 250177
name: beta ketoacyl ACP synthase 2
reactant: 250190
product: 250227
notes: GENE_ASSOCIATION: b1091 SUBSYSTEM: Membrane Lipid Metabolism
kinetic law: 250252
product: 250215

250240
type: SpeciesReference
stoichiometry: 1.0
species: 178283

250202
type: SpeciesReference
stoichiometry: 1.0
species: 178906

178906
type: Species
notes: FORMULA: C14H22N2O10PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Malonyl-acyl-carrier-protein

250177
type: SpeciesReference
stoichiometry: 1.0
species: 177941

250190
type: SpeciesReference
stoichiometry: 1.0
species: 178743

250227
type: SpeciesReference
stoichiometry: 1.0
species: 178278

194988
type: LocalParameter
value: 0.0

194987
type: LocalParameter
value: 0.0

194985
type: LocalParameter
value: 1000.0

194984
type: LocalParameter
value: 0.0

250215
type: SpeciesReference
stoichiometry: 1.0
species: 177996

177996
type: Species
notes: FORMULA: C15H25N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetoacetyl-ACP

179469
type: Species
notes: FORMULA: C28H41N7O19P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Pimeloyl-CoA

182499
type: Reaction
reactant: 238735
kinetic law: 238795
reversible: false
product: 238783
name: Glycolate dehydrogenase NAD
reactant: 238759
notes: GENE_ASSOCIATION: ( b3553 or b1033 ) SUBSYSTEM: Glyoxylate Metabolism
reactant: 238747
product: 238771
fast: false

238735
type: SpeciesReference
stoichiometry: 1.0
species: 178678

178678
type: Species
notes: FORMULA: C2H1O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glyoxylate

193635
type: LocalParameter
value: 0.0

193633
type: LocalParameter
value: 0.0

193631
type: LocalParameter
value: 1000.0

193630
type: LocalParameter
value: 0.0

238783
type: SpeciesReference
stoichiometry: 1.0
species: 179167

238759
type: SpeciesReference
stoichiometry: 1.0
species: 179169

238747
type: SpeciesReference
stoichiometry: 1.0
species: 178743

238771
type: SpeciesReference
stoichiometry: 1.0
species: 178699

178699
type: Species
notes: FORMULA: C2H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycolate

184793
type: Reaction
product: 306556
kinetic law: 306568
notes: GENE_ASSOCIATION: b2497 SUBSYSTEM: Transport Inner Membrane
reversible: false
product: 306544
reactant: 306532
fast: false
reactant: 306520
name: uracil transport in via proton symport periplasm

306556
type: SpeciesReference
stoichiometry: 1.0
species: 180125

200571
type: LocalParameter
value: 0.0

200568
type: LocalParameter
value: 0.0

200567
type: LocalParameter
value: 1000.0

200564
type: LocalParameter
value: 0.0

306544
type: SpeciesReference
stoichiometry: 1.0
species: 178743

306532
type: SpeciesReference
stoichiometry: 1.0
species: 180131

180131
type: Species
notes: FORMULA: C4H4N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Uracil

306520
type: SpeciesReference
stoichiometry: 1.0
species: 178745

181718
type: Reaction
kinetic law: 214525
reactant: 214513
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Cob I alamin exchange

190287
type: LocalParameter
value: 0.0

190284
type: LocalParameter
value: 0.0

190281
type: LocalParameter
value: 1000.0

190278
type: LocalParameter
value: -0.01

214513
type: SpeciesReference
stoichiometry: 1.0
species: 178212

178212
type: Species
notes: FORMULA: C62H88CoN13O14P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Cob-I-alamin

178281
type: Species
notes: FORMULA: CO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: CO2

177652
type: Species
notes: FORMULA: C15H27N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3R-3-Hydroxyacyl-acyl-carrier-protein

184266
type: Reaction
name: protoporphyrinogen oxidase anaerobic
product: 287151
reactant: 287127
product: 287163
kinetic law: 287175
reactant: 287139
reversible: false
fast: false
notes: GENE_ASSOCIATION: b3850 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis

287151
type: SpeciesReference
stoichiometry: 1.0
species: 179503

179503
type: Species
notes: FORMULA: C34H32N4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Protoporphyrin

287127
type: SpeciesReference
stoichiometry: 3.0
species: 178575

178575
type: Species
notes: FORMULA: C4H2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Fumarate

287163
type: SpeciesReference
stoichiometry: 3.0
species: 179731

198390
type: LocalParameter
value: 0.0

198389
type: LocalParameter
value: 0.0

198387
type: LocalParameter
value: 1000.0

198386
type: LocalParameter
value: 0.0

287139
type: SpeciesReference
stoichiometry: 1.0
species: 179505

183983
type: Reaction
fast: false
notes: GENE_ASSOCIATION: b1281 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
product: 273972
product: 273960
kinetic law: 273985
reactant: 273936
reversible: false
name: orotidine 5 phosphate decarboxylase
reactant: 273948

273972
type: SpeciesReference
stoichiometry: 1.0
species: 180046

273960
type: SpeciesReference
stoichiometry: 1.0
species: 178278

197338
type: LocalParameter
value: 0.0

197336
type: LocalParameter
value: 0.0

197335
type: LocalParameter
value: 1000.0

197333
type: LocalParameter
value: 0.0

273936
type: SpeciesReference
stoichiometry: 1.0
species: 178743

273948
type: SpeciesReference
stoichiometry: 1.0
species: 179287

179287
type: Species
notes: FORMULA: C10H10N2O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Orotidine-5-phosphate

184131
type: Reaction
reactant: 281196
product: 281220
product: 281232
reactant: 281208
name: phosphatidylglycerol phosphate phosphatase periplasm n C180
fast: false
kinetic law: 281244
notes: GENE_ASSOCIATION: ( b1278 or b0418 ) SUBSYSTEM: Glycerophospholipid Metabolism
reversible: false

281196
type: SpeciesReference
stoichiometry: 1.0
species: 178739

281220
type: SpeciesReference
stoichiometry: 1.0
species: 179403

281232
type: SpeciesReference
stoichiometry: 1.0
species: 179467

281208
type: SpeciesReference
stoichiometry: 1.0
species: 179431

179431
type: Species
notes: FORMULA: C42H81O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerophosphate-dioctadecanoyl-n-C180

197965
type: LocalParameter
value: 0.0

197964
type: LocalParameter
value: 0.0

197962
type: LocalParameter
value: 1000.0

197961
type: LocalParameter
value: 0.0

182772
type: Reaction
reactant: 244364
reactant: 244340
reactant: 244352
product: 244376
name: Heme O synthase
kinetic law: 244400
product: 244388
fast: false
reversible: false
notes: GENE_ASSOCIATION: b0428 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis

244364
type: SpeciesReference
stoichiometry: 1.0
species: 179445

179445
type: Species
notes: FORMULA: C34H30FeN4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Protoheme

244340
type: SpeciesReference
stoichiometry: 1.0
species: 178561

178561
type: Species
notes: FORMULA: C15H25O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Farnesyl-diphosphate

244352
type: SpeciesReference
stoichiometry: 1.0
species: 178737

244376
type: SpeciesReference
stoichiometry: 1.0
species: 178759

178759
type: Species
notes: FORMULA: C49H56FeN4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Heme-O

194495
type: LocalParameter
value: 0.0

194493
type: LocalParameter
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194492
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194490
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value: 0.0

244388
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species: 179501

179771
type: Species
notes: FORMULA: C6H9O7
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Tagaturonate

181133
type: Reaction
kinetic law: 175447
reversible: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Outer Membrane
product: 175423
product: 175435
reactant: 175398
fast: false
name: aerobactin secretion to extracellular
reactant: 175410

187515
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value: 0.0

187514
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value: 0.0

187512
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187511
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value: 0.0

175423
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species: 178133

178133
type: Species
notes: FORMULA: C22H33N4O13
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: aerobactin-minus-Fe3

175435
type: SpeciesReference
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species: 178743

175398
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species: 178139

178139
type: Species
notes: FORMULA: C22H33N4O13
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boundary condition: false
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initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: aerobactin-minus-Fe3

175410
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species: 178745

177431
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notes: FORMULA: C20H38O9P1
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C141

182930
type: Reaction
kinetic law: 247795
product: 247783
product: 247771
reactant: 247759
notes: GENE_ASSOCIATION: b4015 SUBSYSTEM: Anaplerotic Reactions
fast: false
reversible: false
name: Isocitrate lyase

194793
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value: 0.0

194791
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value: 0.0

194790
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value: 1000.0

194788
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value: 0.0

247783
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species: 179731

247771
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species: 178678

247759
type: SpeciesReference
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178793
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Isocitrate

178882
type: Species
notes: FORMULA: C110H196N2O39P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: KDO-2-lipid-A

182183
type: Reaction
reversible: false
product: 225524
fast: false
product: 225512
reactant: 225487
reactant: 225500
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism
name: Fe III hydroxamate reductase
kinetic law: 225560
product: 225548
product: 225536

225524
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stoichiometry: 2.0
species: 178518

225512
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species: 178510

178510
type: Species
notes: FORMULA: C27H31N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Flavin-adenine-dinucleotide-oxidized

225487
type: SpeciesReference
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species: 178511

178511
type: Species
notes: FORMULA: C27H33N9O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Flavin-adenine-dinucleotide-reduced

225500
type: SpeciesReference
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species: 178529

178529
type: Species
notes: FORMULA: C9H18O6N3Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Fe-III-hydroxamate

192058
type: LocalParameter
value: 0.0

192057
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value: 0.0

192056
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value: 1000.0

192054
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value: 0.0

225548
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stoichiometry: 2.0
species: 178743

225536
type: SpeciesReference
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species: 178532

178532
type: Species
notes: FORMULA: C9H18O6N3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Fe-III-hydoxamate-unloaded

180813
type: Reaction
kinetic law: 167027
product: 167015
product: 167003
reactant: 166990
notes: GENE_ASSOCIATION: ( b0118 or b1276 ) SUBSYSTEM: Citric Acid Cycle
fast: false
reversible: true
name: aconitase half reaction A Citrate hydro lyase

185961
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value: 0.0

185960
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value: 0.0

185959
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value: 1000.0

185957
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value: -1000.0

167015
type: SpeciesReference
stoichiometry: 1.0
species: 178737

167003
type: SpeciesReference
stoichiometry: 1.0
species: 177986

177986
type: Species
notes: FORMULA: C6H3O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cis-Aconitate

166990
type: SpeciesReference
stoichiometry: 1.0
species: 178251

178251
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Citrate

177604
type: Species
notes: FORMULA: C26H40N7O26P5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2--5--triphosphoribosyl-3-dephospho-CoA

181675
type: Reaction
kinetic law: 213534
reactant: 213522
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: 5 Dehydro D gluconate exchange

189882
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value: 0.0

189879
type: LocalParameter
value: 0.0

189876
type: LocalParameter
value: 1000.0

189873
type: LocalParameter
value: 0.0

213522
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stoichiometry: 1.0
species: 177879

178569
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Fructuronate

184316
type: Reaction
reversible: false
product: 289326
product: 289313
kinetic law: 289338
notes: GENE_ASSOCIATION: b4160 SUBSYSTEM: Glycerophospholipid Metabolism
fast: false
name: Phosphatidylserine decarboxylase n C181
reactant: 289301
reactant: 289289

289326
type: SpeciesReference
stoichiometry: 1.0
species: 179371

179371
type: Species
notes: FORMULA: C41H78N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylethanolamine-dioctadec-11-enoyl-n-C181

289313
type: SpeciesReference
stoichiometry: 1.0
species: 178278

198525
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value: 0.0

198524
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value: 0.0

198523
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value: 1000.0

198522
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value: 0.0

289301
type: SpeciesReference
stoichiometry: 1.0
species: 179559

179559
type: Species
notes: FORMULA: C42H77N1O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylserine-dioctadec-11-enoyl-n-C181

289289
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182225
type: Reaction
reversible: false
name: ferroxamine reductase
reactant: 227526
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
product: 227550
product: 227574
kinetic law: 227598
product: 227562
reactant: 227538
product: 227586

227526
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stoichiometry: 2.0
species: 178544

178544
type: Species
notes: FORMULA: C25H46FeN6O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ferroxamine

227550
type: SpeciesReference
stoichiometry: 2.0
species: 178518

227574
type: SpeciesReference
stoichiometry: 1.0
species: 178554

192203
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value: 0.0

192202
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value: 0.0

192200
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value: 1000.0

192199
type: LocalParameter
value: 0.0

227562
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species: 178547

178547
type: Species
notes: FORMULA: C25H46N6O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ferroxamine-minus-Fe-3

227538
type: SpeciesReference
stoichiometry: 1.0
species: 178555

227586
type: SpeciesReference
stoichiometry: 2.0
species: 178743

179942
type: Species
notes: FORMULA: C14H25O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: tetradecenoate-n-C141

181738
type: Reaction
kinetic law: 214985
reactant: 214973
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: L Cysteine exchange

190442
type: LocalParameter
value: 0.0

190439
type: LocalParameter
value: 0.0

190436
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value: 1000.0

190435
type: LocalParameter
value: 0.0

214973
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stoichiometry: 1.0
species: 178331

178331
type: Species
notes: FORMULA: C3H7NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Cysteine

184317
type: Reaction
notes: GENE_ASSOCIATION: b0907 SUBSYSTEM: Glycine and Serine Metabolism
name: phosphoserine transaminase
reactant: 289362
reversible: false
reactant: 289350
product: 289374
fast: false
product: 289386
kinetic law: 289398

289362
type: SpeciesReference
stoichiometry: 1.0
species: 178673

289350
type: SpeciesReference
stoichiometry: 1.0
species: 177828

177828
type: Species
notes: FORMULA: C3H2O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Phosphohydroxypyruvate

289374
type: SpeciesReference
stoichiometry: 1.0
species: 178038

178038
type: Species
notes: FORMULA: C5H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Oxoglutarate

289386
type: SpeciesReference
stoichiometry: 1.0
species: 179567

179567
type: Species
notes: FORMULA: C3H6NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: O-Phospho-L-serine

198529
type: LocalParameter
value: 0.0

198528
type: LocalParameter
value: 0.0

198527
type: LocalParameter
value: 1000.0

198526
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value: 0.0

181541
type: Reaction
reactant: 206310
kinetic law: 206358
product: 206334
reversible: false
reactant: 206322
notes: GENE_ASSOCIATION: b3177 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
name: dihydropteroate synthase
fast: false
product: 206346

206310
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stoichiometry: 1.0
species: 177842

177842
type: Species
notes: FORMULA: C7H6NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Aminobenzoate

188971
type: LocalParameter
value: 0.0

188970
type: LocalParameter
value: 0.0

188969
type: LocalParameter
value: 1000.0

188968
type: LocalParameter
value: 0.0

206334
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stoichiometry: 1.0
species: 178390

178390
type: Species
notes: FORMULA: C14H13N6O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dihydropteroate

206322
type: SpeciesReference
stoichiometry: 1.0
species: 177896

177896
type: Species
notes: FORMULA: C7H8N5O8P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 6-hydroxymethyl-dihydropterin-pyrophosphate

206346
type: SpeciesReference
stoichiometry: 1.0
species: 179501

184286
type: Reaction
fast: false
product: 288059
reactant: 288035
reactant: 288011
name: phosphoribosylformylglycinamidine synthase
product: 288095
product: 288047
reversible: false
reactant: 287999
reactant: 288023
product: 288083
kinetic law: 288107
notes: GENE_ASSOCIATION: b2557 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
product: 288071

288059
type: SpeciesReference
stoichiometry: 1.0
species: 178559

178559
type: Species
notes: FORMULA: C8H15N3O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Formamido-N1-5-phospho-D-ribosyl-acetamidine

288035
type: SpeciesReference
stoichiometry: 1.0
species: 178737

288011
type: SpeciesReference
stoichiometry: 1.0
species: 178550

178550
type: Species
notes: FORMULA: C8H13N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N2-Formyl-N1-5-phospho-D-ribosyl-glycinamide

288095
type: SpeciesReference
stoichiometry: 1.0
species: 179463

288047
type: SpeciesReference
stoichiometry: 1.0
species: 178016

287999
type: SpeciesReference
stoichiometry: 1.0
species: 178173

288023
type: SpeciesReference
stoichiometry: 1.0
species: 178665

288083
type: SpeciesReference
stoichiometry: 1.0
species: 178743

198442
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value: 0.0

198441
type: LocalParameter
value: 0.0

198440
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value: 1000.0

198439
type: LocalParameter
value: 0.0

288071
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stoichiometry: 1.0
species: 178673

179471
type: Species
notes: FORMULA: C37H62N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Palmitoyl-CoA-n-C160CoA

177899
type: Species
notes: FORMULA: C6H9O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 6-phospho-D-glucono-1-5-lactone

182402
type: Reaction
reversible: true
name: glycine hydroxymethyltransferase reversible
reactant: 234670
fast: false
kinetic law: 234730
notes: GENE_ASSOCIATION: b2551 SUBSYSTEM: Glycine and Serine Metabolism
product: 234718
product: 234694
reactant: 234682
product: 234706

234670
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stoichiometry: 1.0
species: 179671

179671
type: Species
notes: FORMULA: C3H7NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Serine

193148
type: LocalParameter
value: 0.0

193145
type: LocalParameter
value: 0.0

193142
type: LocalParameter
value: 1000.0

193139
type: LocalParameter
value: -1000.0

234718
type: SpeciesReference
stoichiometry: 1.0
species: 179028

179028
type: Species
notes: FORMULA: C20H21N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-10-Methylenetetrahydrofolate

234694
type: SpeciesReference
stoichiometry: 1.0
species: 178679

234682
type: SpeciesReference
stoichiometry: 1.0
species: 179807

234706
type: SpeciesReference
stoichiometry: 1.0
species: 178737

180038
type: Species
notes: FORMULA: C15H19N2O18P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: UDP-D-glucuronate

184287
type: Reaction
kinetic law: 288144
product: 288132
reactant: 288119
notes: GENE_ASSOCIATION: b2024 SUBSYSTEM: Histidine Metabolism
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reversible: true
name: 1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase

198446
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value: 0.0

198445
type: LocalParameter
value: 0.0

198444
type: LocalParameter
value: 1000.0

198443
type: LocalParameter
value: -1000.0

288132
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stoichiometry: 1.0
species: 179529

179529
type: Species
notes: FORMULA: C15H21N5O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-5-phospho-1-deoxyribulos-1-ylamino-methylideneamino-1-5-phosphoribosyl-imidazole-4-carboxamide

288119
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stoichiometry: 1.0
species: 179527

179527
type: Species
notes: FORMULA: C15H21N5O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-5-Phosphoribosyl-5-5-phosphoribosylamino-methylideneaminoimidazole-4-carboxamide

178473
type: Species
notes: FORMULA: C10H13N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: dTMP

179799
type: Species
notes: FORMULA: C21H37N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Dec-2-enoyl-acyl-carrier-protein

184152
type: Reaction
reversible: true
product: 282195
fast: false
kinetic law: 282207
reactant: 282159
reactant: 282171
product: 282183
name: L phenylalanine reversible transport via proton symport periplasm
notes: GENE_ASSOCIATION: ( b0576 or b0112 ) SUBSYSTEM: Transport Inner Membrane

282195
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stoichiometry: 1.0
species: 179439

179439
type: Species
notes: FORMULA: C9H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Phenylalanine

198048
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value: 0.0

198047
type: LocalParameter
value: 0.0

198045
type: LocalParameter
value: 1000.0

198044
type: LocalParameter
value: -1000.0

282159
type: SpeciesReference
stoichiometry: 1.0
species: 178745

282171
type: SpeciesReference
stoichiometry: 1.0
species: 179443

179443
type: Species
notes: FORMULA: C9H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Phenylalanine

282183
type: SpeciesReference
stoichiometry: 1.0
species: 178743

184118
type: Reaction
reactant: 280656
name: phosphatidylglycerol phosphate phosphatase n C140
product: 280692
reversible: false
notes: GENE_ASSOCIATION: ( b0418 or b1278 ) SUBSYSTEM: Glycerophospholipid Metabolism
product: 280680
kinetic law: 280704
reactant: 280668
fast: false

280656
type: SpeciesReference
stoichiometry: 1.0
species: 178737

280692
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stoichiometry: 1.0
species: 179463

280680
type: SpeciesReference
stoichiometry: 1.0
species: 179385

197911
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value: 0.0

197908
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value: 0.0

197907
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value: 1000.0

197904
type: LocalParameter
value: 0.0

280668
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stoichiometry: 1.0
species: 179413

179413
type: Species
notes: FORMULA: C34H65O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerophosphate-ditetradecanoyl-n-C140

180122
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notes: FORMULA: C40H36N4O16
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Uroporphyrinogen-III

178573
type: Species
notes: FORMULA: C6H12O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Fucose

182403
type: Reaction
reactant: 234755
kinetic law: 234792
reactant: 234743
fast: false
name: guanylate kinase GMPATP
notes: GENE_ASSOCIATION: b3648 SUBSYSTEM: Nucleotide Salvage Pathway
product: 234780
product: 234767
reversible: true

234755
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stoichiometry: 1.0
species: 178707

178707
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: GMP

193158
type: LocalParameter
value: 0.0

193155
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value: 0.0

193152
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value: 1000.0

193149
type: LocalParameter
value: -1000.0

234743
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stoichiometry: 1.0
species: 178173

234780
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stoichiometry: 1.0
species: 178636

234767
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species: 178016

182793
type: Reaction
product: 244885
fast: false
name: hydroxyethylthiazole kinase
reactant: 244861
reactant: 244848
product: 244897
kinetic law: 244909
product: 244873
reversible: false
notes: GENE_ASSOCIATION: b2104 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis

244885
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stoichiometry: 1.0
species: 178016

244861
type: SpeciesReference
stoichiometry: 1.0
species: 178173

244848
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stoichiometry: 1.0
species: 177858

177858
type: Species
notes: FORMULA: C6H9NOS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Methyl-5-2-hydroxyethyl-thiazole

244897
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stoichiometry: 1.0
species: 178743

194535
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value: 0.0

194533
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value: 0.0

194532
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value: 1000.0

194530
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value: 0.0

244873
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stoichiometry: 1.0
species: 177861

177861
type: Species
notes: FORMULA: C6H8NO4PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Methyl-5-2-phosphoethyl-thiazole

179111
type: Species
notes: FORMULA: CH3O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: methanesulfonate

182100
type: Reaction
kinetic law: 221270
product: 221258
reactant: 221246
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: fructose 6 phosphate transport via diffusion extracellular to periplasm

191780
type: LocalParameter
value: 0.0

191778
type: LocalParameter
value: 0.0

191777
type: LocalParameter
value: 1000.0

191776
type: LocalParameter
value: -1000.0

221258
type: SpeciesReference
stoichiometry: 1.0
species: 178509

178509
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Fructose-6-phosphate

221246
type: SpeciesReference
stoichiometry: 1.0
species: 178508

178508
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Fructose-6-phosphate

179813
type: Species
notes: FORMULA: C12H17N4OS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Thiamin

178311
type: Species
notes: FORMULA: C7H13NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: crotonobetaine

178727
type: Species
notes: FORMULA: C5H5N5O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Guanine

178395
type: Species
notes: FORMULA: C10H11N4O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: dIMP

184119
type: Reaction
fast: false
name: phosphatidylglycerol phosphate phosphatase periplasm n C140
reactant: 280716
notes: GENE_ASSOCIATION: ( b1278 or b0418 ) SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 280728
product: 280752
product: 280740
kinetic law: 280764
reversible: false

280716
type: SpeciesReference
stoichiometry: 1.0
species: 178739

280728
type: SpeciesReference
stoichiometry: 1.0
species: 179415

179415
type: Species
notes: FORMULA: C34H65O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerophosphate-ditetradecanoyl-n-C140

280752
type: SpeciesReference
stoichiometry: 1.0
species: 179467

280740
type: SpeciesReference
stoichiometry: 1.0
species: 179387

179387
type: Species
notes: FORMULA: C34H66O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerol-ditetradecanoyl-n-C140

197917
type: LocalParameter
value: 0.0

197916
type: LocalParameter
value: 0.0

197913
type: LocalParameter
value: 1000.0

197912
type: LocalParameter
value: 0.0

182283
type: Reaction
kinetic law: 229929
product: 229917
reactant: 229905
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Fumarate transport via diffusion extracellular to periplasm

192398
type: LocalParameter
value: 0.0

192397
type: LocalParameter
value: 0.0

192395
type: LocalParameter
value: 1000.0

192394
type: LocalParameter
value: -1000.0

229917
type: SpeciesReference
stoichiometry: 1.0
species: 178577

178577
type: Species
notes: FORMULA: C4H2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Fumarate

229905
type: SpeciesReference
stoichiometry: 1.0
species: 178576

178576
type: Species
notes: FORMULA: C4H2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Fumarate

181792
type: Reaction
kinetic law: 216023
reactant: 216011
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Fumarate exchange

190773
type: LocalParameter
value: 0.0

190770
type: LocalParameter
value: 0.0

190769
type: LocalParameter
value: 1000.0

190766
type: LocalParameter
value: 0.0

216011
type: SpeciesReference
stoichiometry: 1.0
species: 178576

180834
type: Reaction
kinetic law: 167427
product: 167415
product: 167403
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Inner Membrane
fast: false
reactant: 167391
name: acetate reversible transport via proton symport periplasm
reactant: 167379
reversible: true

185996
type: LocalParameter
value: 0.0

185995
type: LocalParameter
value: 0.0

185994
type: LocalParameter
value: 1000.0

185992
type: LocalParameter
value: -1000.0

167415
type: SpeciesReference
stoichiometry: 1.0
species: 178743

167403
type: SpeciesReference
stoichiometry: 1.0
species: 177926

177926
type: Species
notes: FORMULA: C2H3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetate

167391
type: SpeciesReference
stoichiometry: 1.0
species: 178745

167379
type: SpeciesReference
stoichiometry: 1.0
species: 177929

177929
type: Species
notes: FORMULA: C2H3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Acetate

178376
type: Species
notes: FORMULA: C10H13N5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Deoxyguanosine

178744
type: Species
notes: FORMULA: H
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: H

182246
type: Reaction
name: FMN adenylyltransferase
reversible: false
fast: false
product: 228554
reactant: 228506
reactant: 228518
reactant: 228530
notes: GENE_ASSOCIATION: b0025 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
product: 228542
kinetic law: 228566

228554
type: SpeciesReference
stoichiometry: 1.0
species: 179501

228506
type: SpeciesReference
stoichiometry: 1.0
species: 178173

228518
type: SpeciesReference
stoichiometry: 1.0
species: 178554

228530
type: SpeciesReference
stoichiometry: 1.0
species: 178743

228542
type: SpeciesReference
stoichiometry: 1.0
species: 178510

192273
type: LocalParameter
value: 0.0

192272
type: LocalParameter
value: 0.0

192270
type: LocalParameter
value: 1000.0

192269
type: LocalParameter
value: 0.0

183944
type: Reaction
reactant: 272399
fast: false
notes: GENE_ASSOCIATION: b3622 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
kinetic law: 272459
product: 272423
product: 272447
product: 272435
reactant: 272411
reversible: false
name: O16 anitgen x4 ligase periplasm

272399
type: SpeciesReference
stoichiometry: 1.0
species: 178289

178289
type: Species
notes: FORMULA: C176H303N2O100P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: core-oligosaccharide-lipid-A

197195
type: LocalParameter
value: 0.0

197193
type: LocalParameter
value: 0.0

197192
type: LocalParameter
value: 1000.0

197190
type: LocalParameter
value: 0.0

272423
type: SpeciesReference
stoichiometry: 1.0
species: 178745

272447
type: SpeciesReference
stoichiometry: 1.0
species: 180002

180002
type: Species
notes: FORMULA: C55H89O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Undecaprenyl-diphosphate

272435
type: SpeciesReference
stoichiometry: 1.0
species: 179221

179221
type: Species
notes: FORMULA: C312H523N6O200P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: O16-antigen-x4-core-oligosaccharide-lipid-A

272411
type: SpeciesReference
stoichiometry: 1.0
species: 179223

179223
type: Species
notes: FORMULA: C191H310N4O107P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: O16-antigen-x4-undecaprenyl-diphosphate

184540
type: Reaction
reversible: false
reactant: 296035
notes: GENE_ASSOCIATION: b1981 SUBSYSTEM: Transport Inner Membrane
product: 296047
fast: false
product: 296059
name: shikimate transport in via proton symport periplasm
kinetic law: 296071
reactant: 296023

296035
type: SpeciesReference
stoichiometry: 1.0
species: 179691

179691
type: Species
notes: FORMULA: C7H9O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Shikimate

296047
type: SpeciesReference
stoichiometry: 1.0
species: 178743

296059
type: SpeciesReference
stoichiometry: 1.0
species: 179687

179687
type: Species
notes: FORMULA: C7H9O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Shikimate

199111
type: LocalParameter
value: 0.0

199109
type: LocalParameter
value: 0.0

199107
type: LocalParameter
value: 1000.0

199104
type: LocalParameter
value: 0.0

296023
type: SpeciesReference
stoichiometry: 1.0
species: 178745

184417
type: Reaction
reactant: 290718
fast: false
name: purine nucleoside phosphorylase Deoxyadenosine
product: 290730
product: 290742
reactant: 290706
kinetic law: 290754
notes: GENE_ASSOCIATION: b4384 SUBSYSTEM: Nucleotide Salvage Pathway
reversible: true

290718
type: SpeciesReference
stoichiometry: 1.0
species: 179463

290730
type: SpeciesReference
stoichiometry: 1.0
species: 177505

177505
type: Species
notes: FORMULA: C5H9O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Deoxy-D-ribose-1-phosphate

290742
type: SpeciesReference
stoichiometry: 1.0
species: 177999

177999
type: Species
notes: FORMULA: C5H5N5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Adenine

290706
type: SpeciesReference
stoichiometry: 1.0
species: 178338

178338
type: Species
notes: FORMULA: C10H13N5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Deoxyadenosine

198631
type: LocalParameter
value: 0.0

198630
type: LocalParameter
value: 0.0

198629
type: LocalParameter
value: 1000.0

198627
type: LocalParameter
value: -1000.0

184013
type: Reaction
reactant: 275379
fast: false
product: 275441
reactant: 275391
product: 275429
notes: GENE_ASSOCIATION: b0914 SUBSYSTEM: Transport Inner Membrane
reversible: false
kinetic law: 275466
product: 275416
name: phosphatidate transport via ABC system n C160 periplasm
product: 275453
reactant: 275404

275379
type: SpeciesReference
stoichiometry: 1.0
species: 178173

275441
type: SpeciesReference
stoichiometry: 1.0
species: 179313

179313
type: Species
notes: FORMULA: C35H67O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-2-dihexadecanoyl-sn-glycerol-3-phosphate

275391
type: SpeciesReference
stoichiometry: 1.0
species: 178737

275429
type: SpeciesReference
stoichiometry: 1.0
species: 178743

197448
type: LocalParameter
value: 0.0

197446
type: LocalParameter
value: 0.0

197445
type: LocalParameter
value: 1000.0

197443
type: LocalParameter
value: 0.0

275416
type: SpeciesReference
stoichiometry: 1.0
species: 178016

275453
type: SpeciesReference
stoichiometry: 1.0
species: 179463

275404
type: SpeciesReference
stoichiometry: 1.0
species: 179311

179311
type: Species
notes: FORMULA: C35H67O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-dihexadecanoyl-sn-glycerol-3-phosphate

177770
type: Species
notes: FORMULA: C27H51N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-3-hydroxypalmitoyl-acyl-carrier-protein

180687
type: Reaction
kinetic law: 164631
product: 164619
reactant: 164607
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: acetaldehyde transport via diffusion extracellular to periplasm

185695
type: LocalParameter
value: 0.0

185694
type: LocalParameter
value: 0.0

185692
type: LocalParameter
value: 1000.0

185691
type: LocalParameter
value: -1000.0

164619
type: SpeciesReference
stoichiometry: 1.0
species: 177938

177938
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Acetaldehyde

164607
type: SpeciesReference
stoichiometry: 1.0
species: 177936

177936
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Acetaldehyde

180387
type: Reaction
kinetic law: 158019
product: 158007
reactant: 157995
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport Inner Membrane
fast: false
reversible: false
name: 2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm

185114
type: LocalParameter
value: 0.0

185113
type: LocalParameter
value: 0.0

185111
type: LocalParameter
value: 1000.0

185110
type: LocalParameter
value: 0.0

158007
type: SpeciesReference
stoichiometry: 1.0
species: 177433

177433
type: Species
notes: FORMULA: C22H44O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C160

157995
type: SpeciesReference
stoichiometry: 1.0
species: 177435

179233
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: O2

178642
type: Species
notes: FORMULA: C16H21N5O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: GDP-4-oxo-L-fucose

183062
type: Reaction
reversible: false
notes: GENE_ASSOCIATION: ( b2342 or b3845 ) SUBSYSTEM: Membrane Lipid Metabolism
product: 250529
kinetic law: 250541
fast: false
reactant: 250505
name: 3 ketoacyl CoA thiolase
reactant: 250493
product: 250517

250529
type: SpeciesReference
stoichiometry: 1.0
species: 178354

178354
type: Species
notes: FORMULA: C31H50N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Decanoyl-CoA-n-C100CoA

195013
type: LocalParameter
value: 0.0

195012
type: LocalParameter
value: 0.0

195010
type: LocalParameter
value: 1000.0

195009
type: LocalParameter
value: 0.0

250505
type: SpeciesReference
stoichiometry: 1.0
species: 178283

250493
type: SpeciesReference
stoichiometry: 1.0
species: 177806

177806
type: Species
notes: FORMULA: C33H52N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxododecanoyl-CoA

250517
type: SpeciesReference
stoichiometry: 1.0
species: 177941

182460
type: Reaction
product: 237136
notes: GENE_ASSOCIATION: b2312 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
product: 237112
product: 237124
reactant: 237100
reactant: 237076
reactant: 237088
kinetic law: 237148
reversible: false
name: glutamine phosphoribosyldiphosphate amidotransferase
fast: false

237136
type: SpeciesReference
stoichiometry: 1.0
species: 179519

179519
type: Species
notes: FORMULA: C5H11NO7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-Phospho-beta-D-ribosylamine

237112
type: SpeciesReference
stoichiometry: 1.0
species: 178673

237124
type: SpeciesReference
stoichiometry: 1.0
species: 179501

237100
type: SpeciesReference
stoichiometry: 1.0
species: 179545

237076
type: SpeciesReference
stoichiometry: 1.0
species: 178665

237088
type: SpeciesReference
stoichiometry: 1.0
species: 178737

193479
type: LocalParameter
value: 0.0

193477
type: LocalParameter
value: 0.0

193475
type: LocalParameter
value: 1000.0

193474
type: LocalParameter
value: 0.0

180552
type: Reaction
kinetic law: 161617
reactant: 161568
notes: GENE_ASSOCIATION: b2323 SUBSYSTEM: Cell Envelope Biosynthesis
reactant: 161555
product: 161605
reversible: false
product: 161593
fast: false
name: 3 oxoacyl acyl carrier protein synthase n C141
reactant: 161543
product: 161581

185470
type: LocalParameter
value: 0.0

185469
type: LocalParameter
value: 0.0

185468
type: LocalParameter
value: 1000.0

185466
type: LocalParameter
value: 0.0

161568
type: SpeciesReference
stoichiometry: 1.0
species: 178906

161555
type: SpeciesReference
stoichiometry: 1.0
species: 178743

161605
type: SpeciesReference
stoichiometry: 1.0
species: 178278

161593
type: SpeciesReference
stoichiometry: 1.0
species: 177902

161543
type: SpeciesReference
stoichiometry: 1.0
species: 178221

178221
type: Species
notes: FORMULA: C23H41N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cis-dodec-5-enoyl-acyl-carrier-protein-n-C121

161581
type: SpeciesReference
stoichiometry: 1.0
species: 177797

177797
type: Species
notes: FORMULA: C25H43N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-oxo-cis-myristol-7-eoyl-acyl-carrier-protein

177275
type: Species
notes: FORMULA: C22H42O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-Acyl-sn-glycero-3-phosphoglycerol-n-C161

178815
type: Species
notes: FORMULA: C10H12N4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Inosine

182423
type: Reaction
product: 235483
kinetic law: 235495
product: 235471
reactant: 235434
name: glucosyltransferase I LPS core synthesis
notes: GENE_ASSOCIATION: b3631 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
product: 235459
reversible: false
reactant: 235447
fast: false

235483
type: SpeciesReference
stoichiometry: 1.0
species: 180014

180014
type: Species
notes: FORMULA: C9H11N2O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP

193289
type: LocalParameter
value: 0.0

193286
type: LocalParameter
value: 0.0

193283
type: LocalParameter
value: 1000.0

193280
type: LocalParameter
value: 0.0

235471
type: SpeciesReference
stoichiometry: 1.0
species: 178743

235434
type: SpeciesReference
stoichiometry: 1.0
species: 178794

178794
type: Species
notes: FORMULA: C145H251N2O74P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: inner-core-oligosaccharide-lipid-A-E-coli

235459
type: SpeciesReference
stoichiometry: 1.0
species: 178650

178650
type: Species
notes: FORMULA: C151H261N2O79P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: glucosyl-inner-core-oligosaccharide-lipid-A

235447
type: SpeciesReference
stoichiometry: 1.0
species: 180020

180020
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDPglucose

184841
type: Reaction
product: 308339
reversible: false
notes: GENE_ASSOCIATION: ( b3564 or b0063 ) SUBSYSTEM: Alternate Carbon Metabolism
reactant: 308303
fast: false
product: 308327
reactant: 308315
name: xylulokinase
kinetic law: 308363
product: 308351

308339
type: SpeciesReference
stoichiometry: 1.0
species: 178743

308303
type: SpeciesReference
stoichiometry: 1.0
species: 178173

308327
type: SpeciesReference
stoichiometry: 1.0
species: 178016

308315
type: SpeciesReference
stoichiometry: 1.0
species: 180221

180221
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Xylulose

200778
type: LocalParameter
value: 0.0

200776
type: LocalParameter
value: 0.0

200775
type: LocalParameter
value: 1000.0

200773
type: LocalParameter
value: 0.0

308351
type: SpeciesReference
stoichiometry: 1.0
species: 180206

180206
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Xylulose-5-phosphate

184729
type: Reaction
reactant: 303814
reactant: 303802
name: UDP N acetyl D mannosamine oxidoreductase
reversible: false
reactant: 303790
notes: GENE_ASSOCIATION: b3787 SUBSYSTEM: Cell Envelope Biosynthesis
product: 303826
product: 303850
kinetic law: 303862
product: 303838
fast: false

303814
type: SpeciesReference
stoichiometry: 1.0
species: 179988

179988
type: Species
notes: FORMULA: C17H25N3O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-N-acetyl-D-mannosamine

303802
type: SpeciesReference
stoichiometry: 2.0
species: 179167

303790
type: SpeciesReference
stoichiometry: 1.0
species: 178737

303826
type: SpeciesReference
stoichiometry: 3.0
species: 178743

303850
type: SpeciesReference
stoichiometry: 1.0
species: 179990

179990
type: Species
notes: FORMULA: C17H22N3O18P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-N-acetyl-D-mannosaminouronate

200255
type: LocalParameter
value: 0.0

200252
type: LocalParameter
value: 0.0

200249
type: LocalParameter
value: 1000.0

200248
type: LocalParameter
value: 0.0

303838
type: SpeciesReference
stoichiometry: 2.0
species: 179169

183939
type: Reaction
fast: false
kinetic law: 272266
reactant: 272193
reactant: 272217
product: 272242
reactant: 272205
notes: GENE_ASSOCIATION: ( b4070 and b4071 and b4072 and b4073 ) SUBSYSTEM: Nitrogen Metabolism
product: 272254
name: nitrite Reductase Ubiquinole 8 periplasm
product: 272229
reversible: false

197178
type: LocalParameter
value: 0.0

197177
type: LocalParameter
value: 0.0

197175
type: LocalParameter
value: 1000.0

197174
type: LocalParameter
value: 0.0

272193
type: SpeciesReference
stoichiometry: 2.0
species: 178745

272217
type: SpeciesReference
stoichiometry: 3.0
species: 179597

179597
type: Species
notes: FORMULA: C49H76O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Ubiquinol-8

272242
type: SpeciesReference
stoichiometry: 1.0
species: 179181

179181
type: Species
notes: FORMULA: H4N
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Ammonium

272205
type: SpeciesReference
stoichiometry: 1.0
species: 179201

179201
type: Species
notes: FORMULA: NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Nitrite

272254
type: SpeciesReference
stoichiometry: 3.0
species: 179595

179595
type: Species
notes: FORMULA: C49H74O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Ubiquinone-8

272229
type: SpeciesReference
stoichiometry: 2.0
species: 178739

178685
type: Species
notes: FORMULA: C5H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycine-betaine

180561
type: Reaction
kinetic law: 161872
product: 161860
notes: GENE_ASSOCIATION: ( b1095 or b2323 ) SUBSYSTEM: Cell Envelope Biosynthesis
name: 3 oxoacyl acyl carrier protein synthase n C180
reactant: 161799
fast: false
product: 161835
reactant: 161811
reactant: 161823
product: 161847
reversible: false

185485
type: LocalParameter
value: 0.0

185484
type: LocalParameter
value: 0.0

185483
type: LocalParameter
value: 1000.0

185481
type: LocalParameter
value: 0.0

161860
type: SpeciesReference
stoichiometry: 1.0
species: 178278

161799
type: SpeciesReference
stoichiometry: 1.0
species: 178743

161835
type: SpeciesReference
stoichiometry: 1.0
species: 177819

177819
type: Species
notes: FORMULA: C29H53N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxooctadecanoyl-acyl-carrier-protein

161811
type: SpeciesReference
stoichiometry: 1.0
species: 178906

161823
type: SpeciesReference
stoichiometry: 1.0
species: 179335

179335
type: Species
notes: FORMULA: C27H51N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Palmitoyl-ACP-n-C160ACP

161847
type: SpeciesReference
stoichiometry: 1.0
species: 177902

181557
type: Reaction
reactant: 207179
product: 207203
product: 207229
reversible: false
reactant: 207167
notes: GENE_ASSOCIATION: b0029 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
fast: false
name: 1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp
product: 207216
reactant: 207191
kinetic law: 207241

207179
type: SpeciesReference
stoichiometry: 1.0
species: 178743

207203
type: SpeciesReference
stoichiometry: 1.0
species: 178403

178403
type: Species
notes: FORMULA: C5H9O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dimethylallyl-diphosphate

207229
type: SpeciesReference
stoichiometry: 1.0
species: 179167

207167
type: SpeciesReference
stoichiometry: 1.0
species: 178733

178733
type: Species
notes: FORMULA: C5H9O8P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-hydroxy-2-methyl-2-E-butenyl-4-diphosphate

207216
type: SpeciesReference
stoichiometry: 1.0
species: 178737

207191
type: SpeciesReference
stoichiometry: 1.0
species: 179169

189037
type: LocalParameter
value: 0.0

189036
type: LocalParameter
value: 0.0

189034
type: LocalParameter
value: 1000.0

189033
type: LocalParameter
value: 0.0

181257
type: Reaction
product: 182293
product: 182380
fast: false
reversible: false
kinetic law: 182416
name: butanesulfonate transport via ABC system periplasm
notes: GENE_ASSOCIATION: ( ( b0936 and b0933 and b0934 ) or ( b0365 and b0366 and b0367 ) ) SUBSYSTEM: Transport Inner Membrane
reactant: 182281
product: 182404
reactant: 182269
product: 182392
reactant: 182257

182293
type: SpeciesReference
stoichiometry: 1.0
species: 178016

182380
type: SpeciesReference
stoichiometry: 1.0
species: 178194

178194
type: Species
notes: FORMULA: C4H9O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: butanesulfonate

187858
type: LocalParameter
value: 0.0

187857
type: LocalParameter
value: 0.0

187855
type: LocalParameter
value: 1000.0

187854
type: LocalParameter
value: 0.0

182281
type: SpeciesReference
stoichiometry: 1.0
species: 178737

182404
type: SpeciesReference
stoichiometry: 1.0
species: 179463

182269
type: SpeciesReference
stoichiometry: 1.0
species: 178197

178197
type: Species
notes: FORMULA: C4H9O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: butanesulfonate

182392
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182257
type: SpeciesReference
stoichiometry: 1.0
species: 178173

183805
type: Reaction
kinetic law: 267619
product: 267607
reactant: 267595
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: nickel transport via diffusion extracellular to periplasm

196726
type: LocalParameter
value: 0.0

196724
type: LocalParameter
value: 0.0

196722
type: LocalParameter
value: 1000.0

196721
type: LocalParameter
value: -1000.0

267607
type: SpeciesReference
stoichiometry: 1.0
species: 179187

179187
type: Species
notes: FORMULA: Ni
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: nickel

267595
type: SpeciesReference
stoichiometry: 1.0
species: 179185

179185
type: Species
notes: FORMULA: Ni
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: nickel

177529
type: Species
notes: FORMULA: C5H7O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-keto-4-methylthiobutyrate

181422
type: Reaction
fast: false
reversible: true
product: 194752
product: 194704
name: crotonobetainyl CoA carnitine CoA transferase
reactant: 194644
notes: GENE_ASSOCIATION: b0038 SUBSYSTEM: Oxidative Phosphorylation
kinetic law: 194836
reactant: 194608

194752
type: SpeciesReference
stoichiometry: 1.0
species: 178311

194704
type: SpeciesReference
stoichiometry: 1.0
species: 178307

194644
type: SpeciesReference
stoichiometry: 1.0
species: 178313

178313
type: Species
notes: FORMULA: C28H44N8O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: crotonobetainyl-CoA

188446
type: LocalParameter
value: 0.0

188444
type: LocalParameter
value: 0.0

188443
type: LocalParameter
value: 1000.0

188442
type: LocalParameter
value: -1000.0

194608
type: SpeciesReference
stoichiometry: 1.0
species: 178304

180989
type: Reaction
reactant: 170719
product: 170755
name: phosphoribosylaminoimidazolecarboxamide formyltransferase
reactant: 170731
notes: GENE_ASSOCIATION: b4006 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
fast: false
kinetic law: 170767
reversible: true
product: 170743

170719
type: SpeciesReference
stoichiometry: 1.0
species: 177172

170755
type: SpeciesReference
stoichiometry: 1.0
species: 179807

170731
type: SpeciesReference
stoichiometry: 1.0
species: 178035

178035
type: Species
notes: FORMULA: C9H13N4O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-Amino-1-5-Phospho-D-ribosyl-imidazole-4-carboxamide

186411
type: LocalParameter
value: 0.0

186409
type: LocalParameter
value: 0.0

186407
type: LocalParameter
value: 1000.0

186405
type: LocalParameter
value: -1000.0

170743
type: SpeciesReference
stoichiometry: 1.0
species: 178560

183326
type: Reaction
reactant: 255195
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
reversible: false
product: 255219
product: 255231
kinetic law: 255243
reactant: 255207
fast: false
name: Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160

255195
type: SpeciesReference
stoichiometry: 1.0
species: 177404

177404
type: Species
notes: FORMULA: C21H44NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160

255219
type: SpeciesReference
stoichiometry: 1.0
species: 178113

178113
type: Species
notes: FORMULA: C54H104O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: acyl-phosphatidylglycerol-n-C160

255231
type: SpeciesReference
stoichiometry: 1.0
species: 178585

178585
type: Species
notes: FORMULA: C5H14NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: sn-Glycero-3-phosphoethanolamine

195367
type: LocalParameter
value: 0.0

195366
type: LocalParameter
value: 0.0

195364
type: LocalParameter
value: 1000.0

195363
type: LocalParameter
value: 0.0

255207
type: SpeciesReference
stoichiometry: 1.0
species: 179393

179393
type: Species
notes: FORMULA: C38H74O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phosphatidylglycerol-dihexadecanoyl-n-C160

184850
type: Reaction
kinetic law: 308724
product: 308712
reactant: 308700
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: D xylose transport via diffusion extracellular to periplasm

200811
type: LocalParameter
value: 0.0

200809
type: LocalParameter
value: 0.0

200808
type: LocalParameter
value: 1000.0

200806
type: LocalParameter
value: -1000.0

308712
type: SpeciesReference
stoichiometry: 1.0
species: 180218

180218
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Xylose

308700
type: SpeciesReference
stoichiometry: 1.0
species: 180215

180215
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Xylose

180327
type: Reaction
kinetic law: 156955
product: 156943
reactant: 156931
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport Inner Membrane
fast: false
reversible: false
name: 2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm

185014
type: LocalParameter
value: 0.0

185013
type: LocalParameter
value: 0.0

185011
type: LocalParameter
value: 1000.0

185010
type: LocalParameter
value: 0.0

156943
type: SpeciesReference
stoichiometry: 1.0
species: 177514

177514
type: Species
notes: FORMULA: C19H36O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-hexadec-9-enoyl-sn-glycerol-3-phosphate

156931
type: SpeciesReference
stoichiometry: 1.0
species: 177517

177517
type: Species
notes: FORMULA: C19H36O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-hexadec-9-enoyl-sn-glycerol-3-phosphate

181820
type: Reaction
kinetic law: 216573
reactant: 216561
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: D Glucuronate 1 phosphate exchange

190927
type: LocalParameter
value: 0.0

190924
type: LocalParameter
value: 0.0

190923
type: LocalParameter
value: 1000.0

190920
type: LocalParameter
value: 0.0

216561
type: SpeciesReference
stoichiometry: 1.0
species: 178660

178660
type: Species
notes: FORMULA: C6H8O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Glucuronate-1-phosphate

181708
type: Reaction
kinetic law: 214331
reactant: 214319
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: L Ascorbate exchange

190209
type: LocalParameter
value: 0.0

190206
type: LocalParameter
value: 0.0

190204
type: LocalParameter
value: 1000.0

190203
type: LocalParameter
value: 0.0

214319
type: SpeciesReference
stoichiometry: 1.0
species: 178149

178149
type: Species
notes: FORMULA: C6H8O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Ascorbate

179972
type: Species
notes: FORMULA: C61H99N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: undecaprenyl-phosphate-4-amino-4-formyl-L-arabinose

181123
type: Reaction
reversible: false
product: 175025
reactant: 175013
product: 175037
reactant: 175001
fast: false
kinetic law: 175073
name: aerobactin reductase
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism
product: 175061
product: 175049

175025
type: SpeciesReference
stoichiometry: 2.0
species: 178131

178131
type: Species
notes: FORMULA: C22H33N4O13
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: aerobactin-minus-Fe3

175013
type: SpeciesReference
stoichiometry: 1.0
species: 178511

175037
type: SpeciesReference
stoichiometry: 1.0
species: 178510

175001
type: SpeciesReference
stoichiometry: 2.0
species: 178134

178134
type: Species
notes: FORMULA: C22H33FeN4O13
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Aerobactin

187488
type: LocalParameter
value: 0.0

187486
type: LocalParameter
value: 0.0

187485
type: LocalParameter
value: 1000.0

187483
type: LocalParameter
value: 0.0

175061
type: SpeciesReference
stoichiometry: 2.0
species: 178743

175049
type: SpeciesReference
stoichiometry: 2.0
species: 178518

181887
type: Reaction
kinetic law: 217659
reactant: 217647
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: cold adapted KDO 2 lipid A exchange

191183
type: LocalParameter
value: 0.0

191181
type: LocalParameter
value: 0.0

191180
type: LocalParameter
value: 1000.0

191178
type: LocalParameter
value: 0.0

217647
type: SpeciesReference
stoichiometry: 1.0
species: 178876

178876
type: Species
notes: FORMULA: C114H202N2O39P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: cold-adapted-KDO-2-lipid-A

178659
type: Species
notes: FORMULA: C6H8O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Glucarate

184034
type: Reaction
product: 276428
name: Phosphatidate phosphatase n C160
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism
reversible: false
product: 276440
reactant: 276404
reactant: 276416
kinetic law: 276452
fast: false

276428
type: SpeciesReference
stoichiometry: 1.0
species: 177185

177185
type: Species
notes: FORMULA: C35H68O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160

276440
type: SpeciesReference
stoichiometry: 1.0
species: 179463

276404
type: SpeciesReference
stoichiometry: 1.0
species: 178737

276416
type: SpeciesReference
stoichiometry: 1.0
species: 179311

197535
type: LocalParameter
value: 0.0

197533
type: LocalParameter
value: 0.0

197532
type: LocalParameter
value: 1000.0

197529
type: LocalParameter
value: 0.0

178404
type: Species
notes: FORMULA: C2H6S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dimethyl-sulfide

183639
type: Reaction
kinetic law: 262697
product: 262685
reactant: 262673
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Outer Membrane
fast: false
reversible: false
name: myo inositol phosphate transport via diffusion extracellular to periplasm

196153
type: LocalParameter
value: 0.0

196152
type: LocalParameter
value: 0.0

196145
type: LocalParameter
value: 1000.0

196143
type: LocalParameter
value: 0.0

262685
type: SpeciesReference
stoichiometry: 1.0
species: 179026

179026
type: Species
notes: FORMULA: C6H6O24P6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: myo-Inositol-hexakisphosphate

262673
type: SpeciesReference
stoichiometry: 1.0
species: 179024

179024
type: Species
notes: FORMULA: C6H6O24P6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: myo-Inositol-hexakisphosphate

180573
type: Reaction
reactant: 162170
reactant: 162157
fast: false
product: 162183
name: tripeptide LalaDgluMdap transport via ABC system periplasm
product: 162209
product: 162222
kinetic law: 162235
notes: GENE_ASSOCIATION: ( b1329 and b1244 and b1245 and b1246 and b1247 ) SUBSYSTEM: Murein Recycling
product: 162196
reversible: false
reactant: 162144

162170
type: SpeciesReference
stoichiometry: 1.0
species: 178737

162157
type: SpeciesReference
stoichiometry: 1.0
species: 178173

162183
type: SpeciesReference
stoichiometry: 1.0
species: 177908

177908
type: Species
notes: FORMULA: C15H25N4O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate

162209
type: SpeciesReference
stoichiometry: 1.0
species: 178743

162222
type: SpeciesReference
stoichiometry: 1.0
species: 179463

185505
type: LocalParameter
value: 0.0

185504
type: LocalParameter
value: 0.0

185503
type: LocalParameter
value: 1000.0

185501
type: LocalParameter
value: 0.0

162196
type: SpeciesReference
stoichiometry: 1.0
species: 178016

162144
type: SpeciesReference
stoichiometry: 1.0
species: 177911

177911
type: Species
notes: FORMULA: C15H25N4O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate

183894
type: Reaction
reactant: 270368
kinetic law: 270416
fast: false
product: 270392
notes: GENE_ASSOCIATION: ( b0480 or b4055 ) SUBSYSTEM: Nucleotide Salvage Pathway
name: 5 nucleotidase AMP
product: 270404
reactant: 270380
reversible: false

270368
type: SpeciesReference
stoichiometry: 1.0
species: 178088

178088
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: AMP

197029
type: LocalParameter
value: 0.0

197027
type: LocalParameter
value: 0.0

197026
type: LocalParameter
value: 1000.0

197024
type: LocalParameter
value: 0.0

270392
type: SpeciesReference
stoichiometry: 1.0
species: 178007

270404
type: SpeciesReference
stoichiometry: 1.0
species: 179467

270380
type: SpeciesReference
stoichiometry: 1.0
species: 178739

178203
type: Species
notes: FORMULA: C10H11N5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cAMP

177761
type: Species
notes: FORMULA: C29H46N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-3-Hydroxyoctanoyl-CoA

184564
type: Reaction
name: o succinylbenzoate CoA ligase
kinetic law: 297042
reversible: false
fast: false
reactant: 296993
notes: GENE_ASSOCIATION: b2260 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
reactant: 296969
product: 297005
product: 297018
product: 297030
reactant: 296981

199240
type: LocalParameter
value: 0.0

199238
type: LocalParameter
value: 0.0

199236
type: LocalParameter
value: 1000.0

199233
type: LocalParameter
value: 0.0

296993
type: SpeciesReference
stoichiometry: 1.0
species: 179729

179729
type: Species
notes: FORMULA: C11H8O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: o-Succinylbenzoate

296969
type: SpeciesReference
stoichiometry: 1.0
species: 178173

297005
type: SpeciesReference
stoichiometry: 1.0
species: 178085

297018
type: SpeciesReference
stoichiometry: 1.0
species: 179501

297030
type: SpeciesReference
stoichiometry: 1.0
species: 179655

179655
type: Species
notes: FORMULA: C32H39N7O20P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: O-Succinylbenzoyl-CoA

296981
type: SpeciesReference
stoichiometry: 1.0
species: 178283

178309
type: Species
notes: FORMULA: C4H5N3O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Cytosine

182921
type: Reaction
kinetic law: 247650
product: 247638
reactant: 247625
notes: GENE_ASSOCIATION: b2265 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
fast: false
reversible: true
name: isochorismate synthase

194776
type: LocalParameter
value: 0.0

194775
type: LocalParameter
value: 0.0

194773
type: LocalParameter
value: 1000.0

194772
type: LocalParameter
value: -1000.0

247638
type: SpeciesReference
stoichiometry: 1.0
species: 178792

178792
type: Species
notes: FORMULA: C10H8O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Isochorismate

247625
type: SpeciesReference
stoichiometry: 1.0
species: 178248

178248
type: Species
notes: FORMULA: C10H8O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: chorismate

184606
type: Reaction
notes: GENE_ASSOCIATION: b3791 SUBSYSTEM: Cell Envelope Biosynthesis
product: 298730
name: dTDP 4 amino 4 6 dideoxy D glucose transaminase
reversible: false
product: 298742
reactant: 298706
reactant: 298718
fast: false
kinetic law: 298755

298730
type: SpeciesReference
stoichiometry: 1.0
species: 178038

298742
type: SpeciesReference
stoichiometry: 1.0
species: 178465

178465
type: Species
notes: FORMULA: C16H26N3O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dTDP-4-amino-4-6-dideoxy-D-galactose

298706
type: SpeciesReference
stoichiometry: 1.0
species: 178466

298718
type: SpeciesReference
stoichiometry: 1.0
species: 178673

199515
type: LocalParameter
value: 0.0

199512
type: LocalParameter
value: 0.0

199509
type: LocalParameter
value: 1000.0

199506
type: LocalParameter
value: 0.0

183825
type: Reaction
reactant: 268186
reactant: 268199
kinetic law: 268235
reactant: 268174
product: 268211
name: nicotinate nucleotide adenylyltransferase
notes: GENE_ASSOCIATION: b0639 SUBSYSTEM: Nucleotide Salvage Pathway
product: 268223
fast: false
reversible: true

268186
type: SpeciesReference
stoichiometry: 1.0
species: 178743

268199
type: SpeciesReference
stoichiometry: 1.0
species: 179189

179189
type: Species
notes: FORMULA: C11H12NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nicotinate-D-ribonucleotide

196790
type: LocalParameter
value: 0.0

196787
type: LocalParameter
value: 0.0

196785
type: LocalParameter
value: 1000.0

196784
type: LocalParameter
value: -1000.0

268174
type: SpeciesReference
stoichiometry: 1.0
species: 178173

268211
type: SpeciesReference
stoichiometry: 1.0
species: 178410

178410
type: Species
notes: FORMULA: C21H24N6O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Deamino-NAD

268223
type: SpeciesReference
stoichiometry: 1.0
species: 179501

181269
type: Reaction
kinetic law: 183165
product: 182876
product: 182864
reactant: 182852
notes: GENE_ASSOCIATION: ( b1732 or b3942 ) SUBSYSTEM: Unassigned
fast: false
reversible: false
name: catalase

187901
type: LocalParameter
value: 0.0

187899
type: LocalParameter
value: 0.0

187898
type: LocalParameter
value: 0.0

187895
type: LocalParameter
value: 0.0

182876
type: SpeciesReference
stoichiometry: 1.0
species: 179229

182864
type: SpeciesReference
stoichiometry: 2.0
species: 178737

182852
type: SpeciesReference
stoichiometry: 2.0
species: 178734

178734
type: Species
notes: FORMULA: H2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hydrogen-peroxide

184607
type: Reaction
kinetic law: 298791
product: 298779
reactant: 298767
notes: GENE_ASSOCIATION: b2038 SUBSYSTEM: Cell Envelope Biosynthesis
fast: false
reversible: false
name: dTDP 4 dehydrorhamnose 3 5 epimerase

199525
type: LocalParameter
value: 0.0

199522
type: LocalParameter
value: 0.0

199519
type: LocalParameter
value: 1000.0

199516
type: LocalParameter
value: 0.0

298779
type: SpeciesReference
stoichiometry: 1.0
species: 178467

178467
type: Species
notes: FORMULA: C16H22N2O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dTDP-4-dehydro-6-deoxy-L-mannose

298767
type: SpeciesReference
stoichiometry: 1.0
species: 178466

184307
type: Reaction
product: 288952
notes: GENE_ASSOCIATION: b4160 SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 288940
kinetic law: 288976
name: Phosphatidylserine decarboxylase n C120
product: 288964
reactant: 288928
reversible: false
fast: false

288952
type: SpeciesReference
stoichiometry: 1.0
species: 178278

288940
type: SpeciesReference
stoichiometry: 1.0
species: 179547

179547
type: Species
notes: FORMULA: C30H57N1O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylserine-didodecanoyl-n-C120

198498
type: LocalParameter
value: 0.0

198497
type: LocalParameter
value: 0.0

198496
type: LocalParameter
value: 1000.0

198495
type: LocalParameter
value: 0.0

288964
type: SpeciesReference
stoichiometry: 1.0
species: 179347

179347
type: Species
notes: FORMULA: C29H58N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylethanolamine-didodecanoyl-n-C120

288928
type: SpeciesReference
stoichiometry: 1.0
species: 178743

180795
type: Reaction
fast: false
kinetic law: 166723
reversible: true
notes: GENE_ASSOCIATION: b0221 SUBSYSTEM: Membrane Lipid Metabolism
product: 166711
reactant: 166686
product: 166699
reactant: 166674
name: acyl CoA dehydrogenase octadecanoyl CoA

185931
type: LocalParameter
value: 0.0

185930
type: LocalParameter
value: 0.0

185929
type: LocalParameter
value: 1000.0

185927
type: LocalParameter
value: -1000.0

166711
type: SpeciesReference
stoichiometry: 1.0
species: 179273

179273
type: Species
notes: FORMULA: C39H64N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Octadec-2-enoyl-CoA

166686
type: SpeciesReference
stoichiometry: 1.0
species: 179723

179723
type: Species
notes: FORMULA: C39H66N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Stearoyl-CoA-n-C180CoA

166699
type: SpeciesReference
stoichiometry: 1.0
species: 178511

166674
type: SpeciesReference
stoichiometry: 1.0
species: 178510

181728
type: Reaction
kinetic law: 214745
reactant: 214732
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: core oligosaccharide lipid A exchange

190362
type: LocalParameter
value: 0.0

190359
type: LocalParameter
value: 0.0

190356
type: LocalParameter
value: 1000.0

190355
type: LocalParameter
value: 0.0

214732
type: SpeciesReference
stoichiometry: 1.0
species: 178288

178288
type: Species
notes: FORMULA: C176H303N2O100P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: core-oligosaccharide-lipid-A

183470
type: Reaction
reversible: false
product: 258452
reactant: 258404
reactant: 258428
kinetic law: 258489
product: 258476
product: 258440
name: Maltotriose transport via ABC system periplasm
fast: false
notes: GENE_ASSOCIATION: ( b4034 and b4033 and b4032 and b4035 ) SUBSYSTEM: Transport Inner Membrane
product: 258464
reactant: 258416

258452
type: SpeciesReference
stoichiometry: 1.0
species: 178743

258404
type: SpeciesReference
stoichiometry: 1.0
species: 178173

258428
type: SpeciesReference
stoichiometry: 1.0
species: 178948

178948
type: Species
notes: FORMULA: C18H32O16
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Maltotriose

195618
type: LocalParameter
value: 0.0

195617
type: LocalParameter
value: 0.0

195616
type: LocalParameter
value: 1000.0

195614
type: LocalParameter
value: 0.0

258476
type: SpeciesReference
stoichiometry: 1.0
species: 179463

258440
type: SpeciesReference
stoichiometry: 1.0
species: 178016

258464
type: SpeciesReference
stoichiometry: 1.0
species: 178944

178944
type: Species
notes: FORMULA: C18H32O16
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Maltotriose

258416
type: SpeciesReference
stoichiometry: 1.0
species: 178737

182216
type: Reaction
product: 227164
product: 227152
reversible: false
product: 227188
reactant: 227128
kinetic law: 227200
reactant: 227140
product: 227176
fast: false
name: Fe enterobactin transport via ABC system periplasm
reactant: 227116
notes: GENE_ASSOCIATION: ( b0592 and b0588 and b0590 and b0589 ) SUBSYSTEM: Inorganic Ion Transport and Metabolism

227164
type: SpeciesReference
stoichiometry: 1.0
species: 178541

178541
type: Species
notes: FORMULA: C30H27FeN3O15
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Fe-enterobactin

227152
type: SpeciesReference
stoichiometry: 1.0
species: 178016

227188
type: SpeciesReference
stoichiometry: 1.0
species: 179463

227128
type: SpeciesReference
stoichiometry: 1.0
species: 178543

178543
type: Species
notes: FORMULA: C30H27FeN3O15
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Fe-enterobactin

192173
type: LocalParameter
value: 0.0

192172
type: LocalParameter
value: 0.0

192170
type: LocalParameter
value: 1000.0

192169
type: LocalParameter
value: 0.0

227140
type: SpeciesReference
stoichiometry: 1.0
species: 178737

227176
type: SpeciesReference
stoichiometry: 1.0
species: 178743

227116
type: SpeciesReference
stoichiometry: 1.0
species: 178173

183347
type: Reaction
reactant: 255632
fast: false
reactant: 255620
product: 255656
reversible: false
name: Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
kinetic law: 255668
product: 255644

255632
type: SpeciesReference
stoichiometry: 1.0
species: 179393

255620
type: SpeciesReference
stoichiometry: 1.0
species: 177433

255656
type: SpeciesReference
stoichiometry: 1.0
species: 178588

195402
type: LocalParameter
value: 0.0

195401
type: LocalParameter
value: 0.0

195399
type: LocalParameter
value: 1000.0

195398
type: LocalParameter
value: 0.0

255644
type: SpeciesReference
stoichiometry: 1.0
species: 178113

184862
type: Reaction
reactant: 309226
fast: false
product: 309250
notes: GENE_ASSOCIATION: SUBSYSTEM:
kinetic law: 309286
product: 309274
reversible: false
product: 309238
reactant: 309202
product: 309262
name: Cyd-I
reactant: 309214

309226
type: SpeciesReference
stoichiometry: 1.0
species: 179597

309250
type: SpeciesReference
stoichiometry: 2.0
species: 178745

200855
type: LocalParameter
value: 0.0

200853
type: LocalParameter
value: 0.0

200852
type: LocalParameter
value: 1000.0

200850
type: LocalParameter
value: 0.0

309274
type: SpeciesReference
stoichiometry: 0.04273504
species: 180242

180242
type: Species
notes: FORMULA:
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: CMC

309238
type: SpeciesReference
stoichiometry: 1.0
species: 178737

309202
type: SpeciesReference
stoichiometry: 2.0
species: 178743

309262
type: SpeciesReference
stoichiometry: 1.0
species: 179595

309214
type: SpeciesReference
stoichiometry: 0.5
species: 179229

181093
type: Reaction
reactant: 174033
reversible: false
product: 174070
product: 174082
reactant: 174058
fast: false
name: 4 amino 2 methyl 5 phosphomethylpyrimidine synthetase
reactant: 174045
notes: GENE_ASSOCIATION: b3994 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
kinetic law: 174118
product: 174106
product: 174094

174033
type: SpeciesReference
stoichiometry: 1.0
species: 178037

178037
type: Species
notes: FORMULA: C8H12N3O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-amino-1-5-phospho-D-ribosyl-imidazole

174070
type: SpeciesReference
stoichiometry: 1.0
species: 177846

177846
type: Species
notes: FORMULA: C6H8N3O4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Amino-2-methyl-5-phosphomethylpyrimidine

174082
type: SpeciesReference
stoichiometry: 2.0
species: 178556

174058
type: SpeciesReference
stoichiometry: 1.0
species: 179167

174045
type: SpeciesReference
stoichiometry: 1.0
species: 178737

187404
type: LocalParameter
value: 0.0

187401
type: LocalParameter
value: 0.0

187398
type: LocalParameter
value: 1000.0

187396
type: LocalParameter
value: 0.0

174106
type: SpeciesReference
stoichiometry: 1.0
species: 179169

174094
type: SpeciesReference
stoichiometry: 3.0
species: 178743

181729
type: Reaction
kinetic law: 214769
reactant: 214757
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: coprogen exchange

190370
type: LocalParameter
value: 0.0

190367
type: LocalParameter
value: 0.0

190364
type: LocalParameter
value: 1000.0

190363
type: LocalParameter
value: 0.0

214757
type: SpeciesReference
stoichiometry: 1.0
species: 178295

178295
type: Species
notes: FORMULA: C35H52N6O13Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: coprogen

181135
type: Reaction
name: aerobactin transport via ton system extracellular
reactant: 175471
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Outer Membrane
reactant: 175459
kinetic law: 175507
product: 175483
reversible: false
fast: false
product: 175495

175471
type: SpeciesReference
stoichiometry: 1.0
species: 178745

175459
type: SpeciesReference
stoichiometry: 1.0
species: 178136

178136
type: Species
notes: FORMULA: C22H33FeN4O13
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Aerobactin

187521
type: LocalParameter
value: 0.0

187519
type: LocalParameter
value: 0.0

187518
type: LocalParameter
value: 1000.0

187516
type: LocalParameter
value: 0.0

175483
type: SpeciesReference
stoichiometry: 1.0
species: 178137

178137
type: Species
notes: FORMULA: C22H33FeN4O13
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Aerobactin

175495
type: SpeciesReference
stoichiometry: 1.0
species: 178743

177965
type: Species
notes: FORMULA: C7H9NO5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-L-glutamate

179896
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-Leu

183659
type: Reaction
notes: GENE_ASSOCIATION: b0403 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reactant: 263238
name: Maltodextrin glucosidase maltopentaose
product: 263262
product: 263274
reversible: false
kinetic law: 263286
reactant: 263250

263238
type: SpeciesReference
stoichiometry: 1.0
species: 178737

263262
type: SpeciesReference
stoichiometry: 1.0
species: 178651

178651
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Glucose

263274
type: SpeciesReference
stoichiometry: 1.0
species: 178950

178950
type: Species
notes: FORMULA: C24H42O21
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Maltotetraose

196223
type: LocalParameter
value: 0.0

196221
type: LocalParameter
value: 0.0

196219
type: LocalParameter
value: 1000.0

196217
type: LocalParameter
value: 0.0

263250
type: SpeciesReference
stoichiometry: 1.0
species: 178938

178938
type: Species
notes: FORMULA: C30H52O26
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Maltopentaose

178324
type: Species
notes: FORMULA: CNO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Cyanate

183524
type: Reaction
product: 259486
notes: GENE_ASSOCIATION: ( b1817 and b1818 and b1819 and b2415 and b2416 ) SUBSYSTEM: Transport Inner Membrane
name: D mannose transport via PEPPyr PTS periplasm
fast: false
product: 259498
reversible: false
reactant: 259474
kinetic law: 259510
reactant: 259462

259486
type: SpeciesReference
stoichiometry: 1.0
species: 178958

178958
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Mannose-6-phosphate

259498
type: SpeciesReference
stoichiometry: 1.0
species: 179589

179589
type: Species
notes: FORMULA: C3H3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Pyruvate

259474
type: SpeciesReference
stoichiometry: 1.0
species: 179379

195778
type: LocalParameter
value: 0.0

195775
type: LocalParameter
value: 0.0

195772
type: LocalParameter
value: 1000.0

195769
type: LocalParameter
value: 0.0

259462
type: SpeciesReference
stoichiometry: 1.0
species: 178970

178970
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Mannose

181447
type: Reaction
notes: GENE_ASSOCIATION: b3425 SUBSYSTEM: Unassigned
product: 199955
reversible: false
reactant: 199883
kinetic law: 200016
product: 200004
name: Cyanide sulfurtransferase
product: 199992
reactant: 199931
fast: false

199955
type: SpeciesReference
stoichiometry: 1.0
species: 178743

199883
type: SpeciesReference
stoichiometry: 1.0
species: 178321

178321
type: Species
notes: FORMULA: CHN
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hydrogen-cyanide

188572
type: LocalParameter
value: 0.0

188570
type: LocalParameter
value: 0.0

188569
type: LocalParameter
value: 1000.0

188568
type: LocalParameter
value: 0.0

200004
type: SpeciesReference
stoichiometry: 1.0
species: 179785

179785
type: Species
notes: FORMULA: CNS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Thiocyanate

199992
type: SpeciesReference
stoichiometry: 1.0
species: 179703

199931
type: SpeciesReference
stoichiometry: 1.0
species: 179926

179926
type: Species
notes: FORMULA: O3S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Thiosulfate

182493
type: Reaction
reactant: 238421
reactant: 238433
product: 238445
kinetic law: 238481
notes: GENE_ASSOCIATION: b3945 SUBSYSTEM: Alternate Carbon Metabolism
reversible: false
product: 238457
fast: false
name: Glycerol dehydrogenase
product: 238469

238421
type: SpeciesReference
stoichiometry: 1.0
species: 178696

178696
type: Species
notes: FORMULA: C3H8O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycerol

238433
type: SpeciesReference
stoichiometry: 1.0
species: 179167

238445
type: SpeciesReference
stoichiometry: 1.0
species: 178378

193611
type: LocalParameter
value: 0.0

193609
type: LocalParameter
value: 0.0

193607
type: LocalParameter
value: 1000.0

193606
type: LocalParameter
value: 0.0

238457
type: SpeciesReference
stoichiometry: 1.0
species: 178743

238469
type: SpeciesReference
stoichiometry: 1.0
species: 179169

180879
type: Reaction
notes: GENE_ASSOCIATION: b0030 SUBSYSTEM: Alternate Carbon Metabolism
reversible: false
reactant: 168256
reactant: 168268
fast: false
product: 168292
product: 168280
name: adenosine hydrolase
kinetic law: 168304

168256
type: SpeciesReference
stoichiometry: 1.0
species: 178004

168268
type: SpeciesReference
stoichiometry: 1.0
species: 178737

168292
type: SpeciesReference
stoichiometry: 1.0
species: 179621

179621
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Ribose

168280
type: SpeciesReference
stoichiometry: 1.0
species: 177999

186121
type: LocalParameter
value: 0.0

186118
type: LocalParameter
value: 0.0

186115
type: LocalParameter
value: 1000.0

186112
type: LocalParameter
value: 0.0

178757
type: Species
notes: FORMULA: C37H60N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Hexadec-2-enoyl-CoA

177939
type: Species
notes: FORMULA: C9H8NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetylanthranilate

179637
type: Species
notes: FORMULA: C6H12O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Rhamnose

184585
type: Reaction
product: 297874
product: 297898
reactant: 297838
fast: false
reactant: 297862
kinetic law: 297922
notes: GENE_ASSOCIATION: ( ( b2422 and b2424 and b2423 and b3917 ) or ( b0763 and b0764 and b0765 ) or ( b2422 and b2425 and b2424 and b2423 ) ) SUBSYSTEM: Inorganic Ion Transport and Metabolism
name: sulfate transport via ABC system periplasm
product: 297910
product: 297886
reactant: 297850
reversible: false

297874
type: SpeciesReference
stoichiometry: 1.0
species: 178016

297898
type: SpeciesReference
stoichiometry: 1.0
species: 179463

297838
type: SpeciesReference
stoichiometry: 1.0
species: 178173

297862
type: SpeciesReference
stoichiometry: 1.0
species: 179713

179713
type: Species
notes: FORMULA: O4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Sulfate

199375
type: LocalParameter
value: 0.0

199372
type: LocalParameter
value: 0.0

199369
type: LocalParameter
value: 1000.0

199366
type: LocalParameter
value: 0.0

297910
type: SpeciesReference
stoichiometry: 1.0
species: 179709

179709
type: Species
notes: FORMULA: O4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Sulfate

297886
type: SpeciesReference
stoichiometry: 1.0
species: 178743

297850
type: SpeciesReference
stoichiometry: 1.0
species: 178737

184450
type: Reaction
kinetic law: 292164
product: 292152
reactant: 292140
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Ribose 5 phosphate transport via diffusion extracellular to periplasm

198749
type: LocalParameter
value: 0.0

198748
type: LocalParameter
value: 0.0

198747
type: LocalParameter
value: 1000.0

198745
type: LocalParameter
value: -1000.0

292152
type: SpeciesReference
stoichiometry: 1.0
species: 179609

179609
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: alpha-D-Ribose-5-phosphate

292140
type: SpeciesReference
stoichiometry: 1.0
species: 179607

179607
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: alpha-D-Ribose-5-phosphate

182942
type: Reaction
kinetic law: 248035
product: 248023
reactant: 248011
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: L idonate transport via diffusion extracellular to periplasm

194813
type: LocalParameter
value: 0.0

194812
type: LocalParameter
value: 0.0

194810
type: LocalParameter
value: 1000.0

194809
type: LocalParameter
value: -1000.0

248023
type: SpeciesReference
stoichiometry: 1.0
species: 178797

178797
type: Species
notes: FORMULA: C6H11O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Idonate

248011
type: SpeciesReference
stoichiometry: 1.0
species: 178796

178796
type: Species
notes: FORMULA: C6H11O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Idonate

183098
type: Reaction
reversible: false
product: 251267
reactant: 251255
reactant: 251243
name: 4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane
fast: false
kinetic law: 251291
product: 251279
notes: GENE_ASSOCIATION: b2257 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling

251267
type: SpeciesReference
stoichiometry: 1.0
species: 177984

177984
type: Species
notes: FORMULA: C181H314N3O103P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A

251255
type: SpeciesReference
stoichiometry: 1.0
species: 179976

251243
type: SpeciesReference
stoichiometry: 1.0
species: 178289

195073
type: LocalParameter
value: 0.0

195072
type: LocalParameter
value: 0.0

195070
type: LocalParameter
value: 1000.0

195069
type: LocalParameter
value: 0.0

251279
type: SpeciesReference
stoichiometry: 1.0
species: 180006

180006
type: Species
notes: FORMULA: C55H89O4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Undecaprenyl-phosphate

184627
type: Reaction
reactant: 299552
reactant: 299564
product: 299576
fast: false
reactant: 299540
product: 299612
name: thiamine transport via ABC system periplasm
reversible: false
product: 299588
notes: GENE_ASSOCIATION: ( b0068 and b0067 and b0066 ) SUBSYSTEM: Transport Inner Membrane
kinetic law: 299625
product: 299600

299552
type: SpeciesReference
stoichiometry: 1.0
species: 178737

299564
type: SpeciesReference
stoichiometry: 1.0
species: 179813

299576
type: SpeciesReference
stoichiometry: 1.0
species: 178016

299540
type: SpeciesReference
stoichiometry: 1.0
species: 178173

299612
type: SpeciesReference
stoichiometry: 1.0
species: 179809

179809
type: Species
notes: FORMULA: C12H17N4OS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Thiamin

299588
type: SpeciesReference
stoichiometry: 1.0
species: 178743

199655
type: LocalParameter
value: 0.0

199652
type: LocalParameter
value: 0.0

199649
type: LocalParameter
value: 1000.0

199646
type: LocalParameter
value: 0.0

299600
type: SpeciesReference
stoichiometry: 1.0
species: 179463

182715
type: Reaction
kinetic law: 243256
product: 243244
reactant: 243232
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: hydrogen transport via diffusion extracellular to periplasm

194045
type: LocalParameter
value: 0.0

194044
type: LocalParameter
value: 0.0

194042
type: LocalParameter
value: 1000.0

194041
type: LocalParameter
value: -1000.0

243244
type: SpeciesReference
stoichiometry: 1.0
species: 178732

178732
type: Species
notes: FORMULA: H2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: H2

243232
type: SpeciesReference
stoichiometry: 1.0
species: 178731

178731
type: Species
notes: FORMULA: H2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: H2

183781
type: Reaction
product: 266873
reactant: 266849
product: 266886
fast: false
reactant: 266861
notes: GENE_ASSOCIATION: ( b0474 or b2518 ) SUBSYSTEM: Nucleotide Salvage Pathway
reversible: true
name: nucleoside diphosphate kinase ATPUDP
kinetic law: 266898

266873
type: SpeciesReference
stoichiometry: 1.0
species: 178016

266849
type: SpeciesReference
stoichiometry: 1.0
species: 178173

266886
type: SpeciesReference
stoichiometry: 1.0
species: 180158

266861
type: SpeciesReference
stoichiometry: 1.0
species: 180014

196653
type: LocalParameter
value: 0.0

196651
type: LocalParameter
value: 0.0

196649
type: LocalParameter
value: 1000.0

196648
type: LocalParameter
value: -1000.0

184530
type: Reaction
name: Succinylglutamic semialdehyde dehydrogenase
kinetic law: 295585
reactant: 295512
notes: GENE_ASSOCIATION: b1746 SUBSYSTEM: Arginine and Proline Metabolism
reactant: 295536
reactant: 295524
fast: false
reversible: false
product: 295548
product: 295560
product: 295573

199055
type: LocalParameter
value: 0.0

199053
type: LocalParameter
value: 0.0

199051
type: LocalParameter
value: 1000.0

199048
type: LocalParameter
value: 0.0

295512
type: SpeciesReference
stoichiometry: 1.0
species: 178737

295536
type: SpeciesReference
stoichiometry: 1.0
species: 179741

179741
type: Species
notes: FORMULA: C9H11NO6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N2-Succinyl-L-glutamate-5-semialdehyde

295524
type: SpeciesReference
stoichiometry: 1.0
species: 179167

295548
type: SpeciesReference
stoichiometry: 2.0
species: 178743

295560
type: SpeciesReference
stoichiometry: 1.0
species: 179169

295573
type: SpeciesReference
stoichiometry: 1.0
species: 179739

179739
type: Species
notes: FORMULA: C9H10NO7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N2-Succinyl-L-glutamate

178098
type: Species
notes: FORMULA: C19H29N2O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid

181193
type: Reaction
kinetic law: 177627
product: 177615
reactant: 177603
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: arsenite transport via diffusion extracellular to periplasm

187680
type: LocalParameter
value: 0.0

187679
type: LocalParameter
value: 0.0

187677
type: LocalParameter
value: 1000.0

187676
type: LocalParameter
value: -1000.0

177615
type: SpeciesReference
stoichiometry: 1.0
species: 178161

178161
type: Species
notes: FORMULA: AsO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: arsenite

177603
type: SpeciesReference
stoichiometry: 1.0
species: 178160

182102
type: Reaction
reactant: 221282
reversible: false
product: 221307
product: 221319
kinetic law: 221343
notes: GENE_ASSOCIATION: b0404 SUBSYSTEM: Cell Envelope Biosynthesis
reactant: 221294
product: 221331
fast: false
name: fatty acyl ACP hydrolase

221282
type: SpeciesReference
stoichiometry: 1.0
species: 178350

178350
type: Species
notes: FORMULA: C21H39N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Decanoyl-ACP-n-C100ACP

221307
type: SpeciesReference
stoichiometry: 1.0
species: 177902

221319
type: SpeciesReference
stoichiometry: 1.0
species: 178351

178351
type: Species
notes: FORMULA: C10H19O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Decanoate-n-C100

191785
type: LocalParameter
value: 0.0

191783
type: LocalParameter
value: 0.0

191782
type: LocalParameter
value: 1000.0

191781
type: LocalParameter
value: 0.0

221294
type: SpeciesReference
stoichiometry: 1.0
species: 178737

221331
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178567
type: Species
notes: FORMULA: C12H25N2O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: fructoselysine

184676
type: Reaction
reversible: false
kinetic law: 301736
fast: false
reactant: 301700
notes: GENE_ASSOCIATION: ( ( b3781 and ( b0888 and b0888 ) ) or b2582 ) SUBSYSTEM: Oxidative Phosphorylation
product: 301712
name: thioredoxin reductase NADPH
reactant: 301676
product: 301724
reactant: 301688

199977
type: LocalParameter
value: 0.0

199974
type: LocalParameter
value: 0.0

199971
type: LocalParameter
value: 1000.0

199968
type: LocalParameter
value: 0.0

301700
type: SpeciesReference
stoichiometry: 1.0
species: 179863

179863
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Oxidized-thioredoxin

301712
type: SpeciesReference
stoichiometry: 1.0
species: 179171

301676
type: SpeciesReference
stoichiometry: 1.0
species: 178743

301724
type: SpeciesReference
stoichiometry: 1.0
species: 179865

179865
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Reduced-thioredoxin

301688
type: SpeciesReference
stoichiometry: 1.0
species: 179173

178698
type: Species
notes: FORMULA: C3H8O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Glycerol

177586
type: Species
notes: FORMULA: C2H2O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Phosphoglycolate

182802
type: Reaction
reactant: 245066
notes: GENE_ASSOCIATION: b0394 SUBSYSTEM: Alternate Carbon Metabolism
reactant: 245078
product: 245090
name: hexokinase D fructoseATP
kinetic law: 245126
reversible: false
product: 245102
fast: false
product: 245114

245066
type: SpeciesReference
stoichiometry: 1.0
species: 178173

245078
type: SpeciesReference
stoichiometry: 1.0
species: 178562

178562
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Fructose

245090
type: SpeciesReference
stoichiometry: 1.0
species: 178016

194551
type: LocalParameter
value: 0.0

194550
type: LocalParameter
value: 0.0

194548
type: LocalParameter
value: 1000.0

194547
type: LocalParameter
value: 0.0

245102
type: SpeciesReference
stoichiometry: 1.0
species: 178507

178507
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Fructose-6-phosphate

245114
type: SpeciesReference
stoichiometry: 1.0
species: 178743

183494
type: Reaction
reactant: 258945
name: Malate transport via proton symport 3 H periplasm
product: 258969
reversible: false
product: 258957
fast: false
reactant: 258933
notes: GENE_ASSOCIATION: ( b4123 or b4138 ) SUBSYSTEM: Transport Inner Membrane
kinetic law: 258981

258945
type: SpeciesReference
stoichiometry: 1.0
species: 178918

178918
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Malate

258969
type: SpeciesReference
stoichiometry: 1.0
species: 178914

178914
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Malate

258957
type: SpeciesReference
stoichiometry: 3.0
species: 178743

258933
type: SpeciesReference
stoichiometry: 3.0
species: 178745

195678
type: LocalParameter
value: 0.0

195675
type: LocalParameter
value: 0.0

195672
type: LocalParameter
value: 1000.0

195669
type: LocalParameter
value: 0.0

177341
type: Species
notes: FORMULA: C10H11N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 2-3-Cyclic-GMP

181467
type: Reaction
product: 201749
reversible: false
reactant: 201725
fast: false
notes: GENE_ASSOCIATION: b2066 SUBSYSTEM: Nucleotide Salvage Pathway
product: 201774
product: 201762
reactant: 201737
kinetic law: 201786
name: cytidine kinase GTP

201749
type: SpeciesReference
stoichiometry: 1.0
species: 178274

178274
type: Species
notes: FORMULA: C9H12N3O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: CMP

201725
type: SpeciesReference
stoichiometry: 1.0
species: 178335

178335
type: Species
notes: FORMULA: C9H13N3O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Cytidine

201774
type: SpeciesReference
stoichiometry: 1.0
species: 178743

201762
type: SpeciesReference
stoichiometry: 1.0
species: 178636

201737
type: SpeciesReference
stoichiometry: 1.0
species: 178723

188656
type: LocalParameter
value: 0.0

188655
type: LocalParameter
value: 0.0

188654
type: LocalParameter
value: 1000.0

188653
type: LocalParameter
value: 0.0

177954
type: Species
notes: FORMULA: C8H14NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: N-Acetyl-D-glucosamine-1-phosphate

179487
type: Species
notes: FORMULA: C3H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Propanal

183641
type: Reaction
reactant: 262709
product: 262745
reactant: 262721
reversible: false
name: murein L D carboxypeptidase murein5px4p periplasm
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis
kinetic law: 262758
product: 262733

262709
type: SpeciesReference
stoichiometry: 1.0
species: 178739

262745
type: SpeciesReference
stoichiometry: 1.0
species: 179119

179119
type: Species
notes: FORMULA: C71H107N13O38
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-disacharide-linked-murein-units-tripeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain

262721
type: SpeciesReference
stoichiometry: 1.0
species: 179141

179141
type: Species
notes: FORMULA: C77H117N15O40
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain

196159
type: LocalParameter
value: 0.0

196157
type: LocalParameter
value: 0.0

196155
type: LocalParameter
value: 1000.0

196154
type: LocalParameter
value: 0.0

262733
type: SpeciesReference
stoichiometry: 1.0
species: 178059

178059
type: Species
notes: FORMULA: C6H12N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Alanyl-D-alanine

183715
type: Reaction
product: 264785
reactant: 264761
fast: false
notes: GENE_ASSOCIATION: b0134 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
product: 264797
reactant: 264749
reversible: false
name: 3 methyl 2 oxobutanoate hydroxymethyltransferase
reactant: 264773
kinetic law: 264809

264785
type: SpeciesReference
stoichiometry: 1.0
species: 177496

177496
type: Species
notes: FORMULA: C6H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Dehydropantoate

264761
type: SpeciesReference
stoichiometry: 1.0
species: 178737

264797
type: SpeciesReference
stoichiometry: 1.0
species: 179807

264749
type: SpeciesReference
stoichiometry: 1.0
species: 177788

264773
type: SpeciesReference
stoichiometry: 1.0
species: 179028

196420
type: LocalParameter
value: 0.0

196418
type: LocalParameter
value: 0.0

196416
type: LocalParameter
value: 1000.0

196414
type: LocalParameter
value: 0.0

182414
type: Reaction
kinetic law: 235167
product: 235155
reactant: 235143
reactant: 235131
notes: GENE_ASSOCIATION: ( b3417 or b3428 ) SUBSYSTEM: GlycolysisGluconeogenesis
fast: false
reversible: false
name: glycogen phosphorylase

193228
type: LocalParameter
value: 0.0

193225
type: LocalParameter
value: 0.0

193222
type: LocalParameter
value: 1000.0

193219
type: LocalParameter
value: 0.0

235155
type: SpeciesReference
stoichiometry: 1.0
species: 178578

178578
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Glucose-1-phosphate

235143
type: SpeciesReference
stoichiometry: 1.0
species: 179463

235131
type: SpeciesReference
stoichiometry: 1.0
species: 178179

178179
type: Species
notes: FORMULA: C6H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: branching-glycogen

181547
type: Reaction
reactant: 206599
name: deoxyinosine transport in via proton symport periplasm
fast: false
reversible: false
product: 206611
reactant: 206587
product: 206623
kinetic law: 206635
notes: GENE_ASSOCIATION: b2964 SUBSYSTEM: Transport Inner Membrane

206599
type: SpeciesReference
stoichiometry: 1.0
species: 178745

206611
type: SpeciesReference
stoichiometry: 1.0
species: 178396

178396
type: Species
notes: FORMULA: C10H12N4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Deoxyinosine

206587
type: SpeciesReference
stoichiometry: 1.0
species: 178398

178398
type: Species
notes: FORMULA: C10H12N4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Deoxyinosine

206623
type: SpeciesReference
stoichiometry: 1.0
species: 178743

188997
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value: 0.0

188996
type: LocalParameter
value: 0.0

188995
type: LocalParameter
value: 1000.0

188994
type: LocalParameter
value: 0.0

180224
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Xylulose

181468
type: Reaction
notes: GENE_ASSOCIATION: ( b2964 or b2393 ) SUBSYSTEM: Transport Inner Membrane
product: 201822
fast: false
reactant: 201810
kinetic law: 201846
reactant: 201798
reversible: false
product: 201834
name: cytidine transport in via proton symport periplasm

201822
type: SpeciesReference
stoichiometry: 1.0
species: 178335

201810
type: SpeciesReference
stoichiometry: 1.0
species: 178745

188660
type: LocalParameter
value: 0.0

188659
type: LocalParameter
value: 0.0

188658
type: LocalParameter
value: 1000.0

188657
type: LocalParameter
value: 0.0

201798
type: SpeciesReference
stoichiometry: 1.0
species: 178337

201834
type: SpeciesReference
stoichiometry: 1.0
species: 178743

177897
type: Species
notes: FORMULA: C6H10O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 6-Phospho-D-gluconate

178260
type: Species
notes: FORMULA: Cl
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Chloride

184685
type: Reaction
reversible: false
name: trehalose transport via PEPPyr PTS periplasm
reactant: 302037
kinetic law: 302085
reactant: 302049
product: 302061
product: 302073
fast: false
notes: GENE_ASSOCIATION: ( b2417 and b2415 and b2416 and b4240 ) SUBSYSTEM: Transport Inner Membrane

302037
type: SpeciesReference
stoichiometry: 1.0
species: 179379

200025
type: LocalParameter
value: 0.0

200022
type: LocalParameter
value: 0.0

200019
type: LocalParameter
value: 1000.0

200018
type: LocalParameter
value: 0.0

302049
type: SpeciesReference
stoichiometry: 1.0
species: 179874

179874
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Trehalose

302061
type: SpeciesReference
stoichiometry: 1.0
species: 179589

302073
type: SpeciesReference
stoichiometry: 1.0
species: 179867

178730
type: Species
notes: FORMULA: H2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: H2

178167
type: Species
notes: FORMULA: C4H6NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Aspartate

177580
type: Species
notes: FORMULA: C14H22N3O17P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-phospho-4-cytidine-5-diphospho-2-C-methyl-D-erythritol

180903
type: Reaction
reversible: false
reactant: 168772
fast: false
reactant: 168784
product: 168808
kinetic law: 168832
notes: GENE_ASSOCIATION: b3397 SUBSYSTEM: Nucleotide Salvage Pathway
product: 168796
name: ADPribose diphosphatase
product: 168820

168772
type: SpeciesReference
stoichiometry: 1.0
species: 178022

178022
type: Species
notes: FORMULA: C15H21N5O14P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: ADPribose

168784
type: SpeciesReference
stoichiometry: 1.0
species: 178737

168808
type: SpeciesReference
stoichiometry: 2.0
species: 178743

186187
type: LocalParameter
value: 0.0

186185
type: LocalParameter
value: 0.0

186183
type: LocalParameter
value: 1000.0

186181
type: LocalParameter
value: 0.0

168796
type: SpeciesReference
stoichiometry: 1.0
species: 178085

168820
type: SpeciesReference
stoichiometry: 1.0
species: 179605

179605
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: alpha-D-Ribose-5-phosphate

183440
type: Reaction
product: 257787
reactant: 257763
fast: false
notes: GENE_ASSOCIATION: b2323 SUBSYSTEM: Membrane Lipid Metabolism
reactant: 257775
kinetic law: 257811
reversible: false
product: 257799
name: Malonyl ACP decarboxylase

257787
type: SpeciesReference
stoichiometry: 1.0
species: 177924

177924
type: Species
notes: FORMULA: C13H23N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetyl-ACP

257763
type: SpeciesReference
stoichiometry: 1.0
species: 178743

257775
type: SpeciesReference
stoichiometry: 1.0
species: 178906

195567
type: LocalParameter
value: 0.0

195566
type: LocalParameter
value: 0.0

195564
type: LocalParameter
value: 1000.0

195563
type: LocalParameter
value: 0.0

257799
type: SpeciesReference
stoichiometry: 1.0
species: 178278

182670
type: Reaction
kinetic law: 242580
product: 242568
reactant: 242556
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: GTP transport via diffusion extracellular to periplasm

193963
type: LocalParameter
value: 0.0

193961
type: LocalParameter
value: 0.0

193960
type: LocalParameter
value: 1000.0

193958
type: LocalParameter
value: -1000.0

242568
type: SpeciesReference
stoichiometry: 1.0
species: 178725

178725
type: Species
notes: FORMULA: C10H12N5O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: GTP

242556
type: SpeciesReference
stoichiometry: 1.0
species: 178724

178724
type: Species
notes: FORMULA: C10H12N5O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: GTP

180167
type: Species
notes: FORMULA: C5H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Valine

184158
type: Reaction
kinetic law: 282400
product: 282388
reactant: 282376
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: phosphate transport via diffusion extracellular to periplasm

198068
type: LocalParameter
value: 0.0

198067
type: LocalParameter
value: 0.0

198065
type: LocalParameter
value: 1000.0

198064
type: LocalParameter
value: -1000.0

282388
type: SpeciesReference
stoichiometry: 1.0
species: 179467

282376
type: SpeciesReference
stoichiometry: 1.0
species: 179465

179465
type: Species
notes: FORMULA: HO4P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Phosphate

182909
type: Reaction
kinetic law: 247467
product: 247454
reactant: 247441
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Hypoxanthine transport via diffusion extracellular to periplasm

194754
type: LocalParameter
value: 0.0

194753
type: LocalParameter
value: 0.0

194751
type: LocalParameter
value: 1000.0

194750
type: LocalParameter
value: -1000.0

247454
type: SpeciesReference
stoichiometry: 1.0
species: 178789

178789
type: Species
notes: FORMULA: C5H4N4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Hypoxanthine

247441
type: SpeciesReference
stoichiometry: 1.0
species: 178788

178788
type: Species
notes: FORMULA: C5H4N4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Hypoxanthine

184079
type: Reaction
reactant: 278660
reactant: 278648
product: 278684
reversible: false
kinetic law: 278708
notes: GENE_ASSOCIATION: b3916 SUBSYSTEM: Alternate Carbon Metabolism
product: 278696
name: Phosphofructokinase
product: 278672
fast: false

278660
type: SpeciesReference
stoichiometry: 1.0
species: 179767

179767
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Tagatose-6-phosphate

278648
type: SpeciesReference
stoichiometry: 1.0
species: 178173

278684
type: SpeciesReference
stoichiometry: 1.0
species: 178743

197730
type: LocalParameter
value: 0.0

197728
type: LocalParameter
value: 0.0

197727
type: LocalParameter
value: 1000.0

197724
type: LocalParameter
value: 0.0

278696
type: SpeciesReference
stoichiometry: 1.0
species: 179769

179769
type: Species
notes: FORMULA: C6H10O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Tagatose-1-6-biphosphate

278672
type: SpeciesReference
stoichiometry: 1.0
species: 178016

178206
type: Species
notes: FORMULA: C48H72CoN11O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Cobinamide

178571
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Fructuronate

179227
type: Species
notes: FORMULA: C89H145N1O32P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: O16-antigen-undecaprenyl-diphosphate

183793
type: Reaction
name: nucleoside diphosphate kinase ATPdADP
reversible: true
kinetic law: 267270
notes: GENE_ASSOCIATION: ( b2518 or b0474 ) SUBSYSTEM: Nucleotide Salvage Pathway
product: 267258
reactant: 267234
fast: false
product: 267246
reactant: 267222

196689
type: LocalParameter
value: 0.0

196687
type: LocalParameter
value: 0.0

196685
type: LocalParameter
value: 1000.0

196684
type: LocalParameter
value: -1000.0

267258
type: SpeciesReference
stoichiometry: 1.0
species: 178347

178347
type: Species
notes: FORMULA: C10H12N5O12P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dATP

267234
type: SpeciesReference
stoichiometry: 1.0
species: 178342

178342
type: Species
notes: FORMULA: C10H12N5O9P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dADP

267246
type: SpeciesReference
stoichiometry: 1.0
species: 178016

267222
type: SpeciesReference
stoichiometry: 1.0
species: 178173

184551
type: Reaction
fast: false
name: Spermidine acetyltransferase
reactant: 296339
product: 296376
reactant: 296326
product: 296364
kinetic law: 296388
reversible: false
product: 296351
notes: GENE_ASSOCIATION: b1584 SUBSYSTEM: Arginine and Proline Metabolism

296339
type: SpeciesReference
stoichiometry: 1.0
species: 179715

296376
type: SpeciesReference
stoichiometry: 1.0
species: 178743

296326
type: SpeciesReference
stoichiometry: 1.0
species: 177941

296364
type: SpeciesReference
stoichiometry: 1.0
species: 178283

199167
type: LocalParameter
value: 0.0

199165
type: LocalParameter
value: 0.0

199163
type: LocalParameter
value: 1000.0

199160
type: LocalParameter
value: 0.0

296351
type: SpeciesReference
stoichiometry: 1.0
species: 177915

177915
type: Species
notes: FORMULA: C9H23N3O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N1-Acetylspermidine

179573
type: Species
notes: FORMULA: C4H14N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Putrescine

182601
type: Reaction
product: 240983
name: Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol
product: 240995
kinetic law: 241007
reversible: false
reactant: 240946
reactant: 240958
notes: GENE_ASSOCIATION: b3449 SUBSYSTEM: Glycerophospholipid Metabolism
fast: false
product: 240970

240983
type: SpeciesReference
stoichiometry: 1.0
species: 178696

240995
type: SpeciesReference
stoichiometry: 1.0
species: 178743

193836
type: LocalParameter
value: 0.0

193835
type: LocalParameter
value: 0.0

193833
type: LocalParameter
value: 1000.0

193832
type: LocalParameter
value: 0.0

240946
type: SpeciesReference
stoichiometry: 1.0
species: 178588

240958
type: SpeciesReference
stoichiometry: 1.0
species: 178737

240970
type: SpeciesReference
stoichiometry: 1.0
species: 178690

178690
type: Species
notes: FORMULA: C3H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycerol-3-phosphate

178071
type: Species
notes: FORMULA: C4H6N4O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Allantoin

178001
type: Species
notes: FORMULA: C5H5N5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Adenine

177410
type: Species
notes: FORMULA: C21H42NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161

183741
type: Reaction
kinetic law: 265592
product: 265580
reactant: 265568
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
reversible: true
name: nitrious oxide transport diffusion

196522
type: LocalParameter
value: 0.0

196520
type: LocalParameter
value: 0.0

196518
type: LocalParameter
value: 1000.0

196515
type: LocalParameter
value: -1000.0

265580
type: SpeciesReference
stoichiometry: 1.0
species: 179147

265568
type: SpeciesReference
stoichiometry: 1.0
species: 179151

179151
type: Species
notes: FORMULA: N2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Nitrous-oxide

181908
type: Reaction
kinetic law: 217997
reactant: 217985
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Melibiose exchange

191260
type: LocalParameter
value: 0.0

191258
type: LocalParameter
value: 0.0

191257
type: LocalParameter
value: 1000.0

191255
type: LocalParameter
value: 0.0

217985
type: SpeciesReference
stoichiometry: 1.0
species: 178980

178980
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Melibiose

182075
type: Reaction
kinetic law: 219954
reactant: 219942
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: UDPgalactose exchange

191695
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value: 0.0

191693
type: LocalParameter
value: 0.0

191692
type: LocalParameter
value: 1000.0

191691
type: LocalParameter
value: 0.0

219942
type: SpeciesReference
stoichiometry: 1.0
species: 180028

180028
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: UDPgalactose

177451
type: Species
notes: FORMULA: C6H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-2-Aceto-2-hydroxybutanoate

180705
type: Reaction
kinetic law: 165039
reversible: false
product: 165027
reactant: 164991
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Alternate Carbon Metabolism
name: N acetyl D galactosamine 1 phosphatase periplasm
reactant: 165003
product: 165015

185725
type: LocalParameter
value: 0.0

185724
type: LocalParameter
value: 0.0

185722
type: LocalParameter
value: 1000.0

185721
type: LocalParameter
value: 0.0

165027
type: SpeciesReference
stoichiometry: 1.0
species: 179467

164991
type: SpeciesReference
stoichiometry: 1.0
species: 177948

177948
type: Species
notes: FORMULA: C8H14NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: N-Acetyl-D-galactosamine-1-phosphate

165003
type: SpeciesReference
stoichiometry: 1.0
species: 178739

165015
type: SpeciesReference
stoichiometry: 1.0
species: 177951

177951
type: Species
notes: FORMULA: C8H15NO6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: N-Acetyl-D-galactosamine

184852
type: Reaction
reactant: 308748
product: 308797
product: 308784
notes: GENE_ASSOCIATION: b3469 SUBSYSTEM: Inorganic Ion Transport and Metabolism
reactant: 308760
name: Zinc Zn2 ABC transporter periplasm
kinetic law: 308821
reversible: false
product: 308809
product: 308772
fast: false
reactant: 308736

308748
type: SpeciesReference
stoichiometry: 1.0
species: 178737

308797
type: SpeciesReference
stoichiometry: 1.0
species: 179463

308784
type: SpeciesReference
stoichiometry: 1.0
species: 178743

308760
type: SpeciesReference
stoichiometry: 1.0
species: 180233

180233
type: Species
notes: FORMULA: Zn
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Zinc

200816
type: LocalParameter
value: 0.0

200815
type: LocalParameter
value: 0.0

200813
type: LocalParameter
value: 1000.0

200812
type: LocalParameter
value: 0.0

308809
type: SpeciesReference
stoichiometry: 1.0
species: 180239

180239
type: Species
notes: FORMULA: Zn
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Zinc

308772
type: SpeciesReference
stoichiometry: 1.0
species: 178016

308736
type: SpeciesReference
stoichiometry: 1.0
species: 178173

181965
type: Reaction
kinetic law: 218915
reactant: 218903
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Phosphonate exchange

191474
type: LocalParameter
value: 0.0

191472
type: LocalParameter
value: 0.0

191471
type: LocalParameter
value: 1000.0

191469
type: LocalParameter
value: 0.0

218903
type: SpeciesReference
stoichiometry: 1.0
species: 179515

183595
type: Reaction
reversible: false
product: 261308
kinetic law: 261320
name: methionine adenosyltransferase
fast: false
product: 261284
reactant: 261248
product: 261296
reactant: 261260
reactant: 261272
notes: GENE_ASSOCIATION: b2942 SUBSYSTEM: Methionine Metabolism

261308
type: SpeciesReference
stoichiometry: 1.0
species: 179501

195995
type: LocalParameter
value: 0.0

195993
type: LocalParameter
value: 0.0

195991
type: LocalParameter
value: 1000.0

195989
type: LocalParameter
value: 0.0

261284
type: SpeciesReference
stoichiometry: 1.0
species: 178080

178080
type: Species
notes: FORMULA: C15H23N6O5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-Adenosyl-L-methionine

261248
type: SpeciesReference
stoichiometry: 1.0
species: 178173

261296
type: SpeciesReference
stoichiometry: 1.0
species: 179463

261260
type: SpeciesReference
stoichiometry: 1.0
species: 178737

261272
type: SpeciesReference
stoichiometry: 1.0
species: 178992

178992
type: Species
notes: FORMULA: C5H11NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Methionine

182076
type: Reaction
kinetic law: 219978
reactant: 219966
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: UDP D glucuronate exchange

191700
type: LocalParameter
value: 0.0

191698
type: LocalParameter
value: 0.0

191697
type: LocalParameter
value: 1000.0

191696
type: LocalParameter
value: 0.0

219966
type: SpeciesReference
stoichiometry: 1.0
species: 180036

180036
type: Species
notes: FORMULA: C15H19N2O18P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: UDP-D-glucuronate

181830
type: Reaction
kinetic law: 216742
reactant: 216730
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Glycerol 2 phosphate exchange

190974
type: LocalParameter
value: 0.0

190973
type: LocalParameter
value: 0.0

190971
type: LocalParameter
value: 1000.0

190970
type: LocalParameter
value: 0.0

216730
type: SpeciesReference
stoichiometry: 1.0
species: 178688

178688
type: Species
notes: FORMULA: C3H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Glycerol-2-phosphate

181568
type: Reaction
kinetic law: 207770
reactant: 207758
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: false
name: Sink needed to allow 4 hydroxy 5 methyl 3 2H furanone to leave system

189092
type: LocalParameter
value: 0.0

189091
type: LocalParameter
value: 0.0

189089
type: LocalParameter
value: 1000.0

189088
type: LocalParameter
value: 0.0

207758
type: SpeciesReference
stoichiometry: 1.0
species: 178775

178775
type: Species
notes: FORMULA: C5H6O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-hydroxy-5-methyl-3-2H-furanone

178640
type: Species
notes: FORMULA: C16H23N5O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: GDP-L-fucose

183068
type: Reaction
reactant: 250626
product: 250638
notes: GENE_ASSOCIATION: ( b3845 or b2342 ) SUBSYSTEM: Membrane Lipid Metabolism
kinetic law: 250662
product: 250650
fast: false
reversible: false
name: 3 ketoacyl CoA thiolase
reactant: 250614

250626
type: SpeciesReference
stoichiometry: 1.0
species: 178283

250638
type: SpeciesReference
stoichiometry: 1.0
species: 177941

195023
type: LocalParameter
value: 0.0

195022
type: LocalParameter
value: 0.0

195020
type: LocalParameter
value: 1000.0

195019
type: LocalParameter
value: 0.0

250650
type: SpeciesReference
stoichiometry: 1.0
species: 179793

179793
type: Species
notes: FORMULA: C35H58N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Tetradecanoyl-CoA-n-C140CoA

250614
type: SpeciesReference
stoichiometry: 1.0
species: 177812

177812
type: Species
notes: FORMULA: C37H60N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxohexadecanoyl-CoA

184209
type: Reaction
name: Phospholipase A2 phosphatidylethanolamine n C161 periplasm
product: 284765
product: 284753
reversible: false
reactant: 284741
reactant: 284729
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism
product: 284777
fast: false
kinetic law: 284789

284765
type: SpeciesReference
stoichiometry: 1.0
species: 178745

284753
type: SpeciesReference
stoichiometry: 1.0
species: 177254

177254
type: Species
notes: FORMULA: C21H42NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-Acyl-sn-glycero-3-phosphoethanolamine-n-C161

284741
type: SpeciesReference
stoichiometry: 1.0
species: 179365

179365
type: Species
notes: FORMULA: C37H70N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: phosphatidylethanolamine-dihexadec-9enoyl-n-C161

284729
type: SpeciesReference
stoichiometry: 1.0
species: 178739

284777
type: SpeciesReference
stoichiometry: 1.0
species: 178755

198237
type: LocalParameter
value: 0.0

198236
type: LocalParameter
value: 0.0

198235
type: LocalParameter
value: 1000.0

198234
type: LocalParameter
value: 0.0

182118
type: Reaction
product: 222123
product: 222111
product: 222135
notes: GENE_ASSOCIATION: b0452 SUBSYSTEM: Cell Envelope Biosynthesis
name: fatty acid CoA thioesterase hexadecanoate
reversible: false
reactant: 222087
fast: false
reactant: 222099
kinetic law: 222147

222123
type: SpeciesReference
stoichiometry: 1.0
species: 178743

222111
type: SpeciesReference
stoichiometry: 1.0
species: 178283

222135
type: SpeciesReference
stoichiometry: 1.0
species: 178750

178750
type: Species
notes: FORMULA: C16H31O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hexadecanoate-n-C160

222087
type: SpeciesReference
stoichiometry: 1.0
species: 178737

222099
type: SpeciesReference
stoichiometry: 1.0
species: 179471

191840
type: LocalParameter
value: 0.0

191838
type: LocalParameter
value: 0.0

191837
type: LocalParameter
value: 1000.0

191836
type: LocalParameter
value: 0.0

181433
type: Reaction
reversible: false
name: Cytosine deaminase
product: 196891
reactant: 196807
reactant: 196831
notes: GENE_ASSOCIATION: b0337 SUBSYSTEM: Nucleotide Salvage Pathway
reactant: 196879
kinetic law: 196963
product: 196915
fast: false

196891
type: SpeciesReference
stoichiometry: 1.0
species: 179177

196807
type: SpeciesReference
stoichiometry: 1.0
species: 178308

178308
type: Species
notes: FORMULA: C4H5N3O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Cytosine

196831
type: SpeciesReference
stoichiometry: 1.0
species: 178737

196879
type: SpeciesReference
stoichiometry: 1.0
species: 178743

188501
type: LocalParameter
value: 0.0

188499
type: LocalParameter
value: 0.0

188498
type: LocalParameter
value: 1000.0

188497
type: LocalParameter
value: 0.0

196915
type: SpeciesReference
stoichiometry: 1.0
species: 180125

178327
type: Species
notes: FORMULA: C3H7NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Cysteine

177532
type: Species
notes: FORMULA: C6H8N3O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate

178740
type: Species
notes: FORMULA: H2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hydrogen-sulfide

180924
type: Reaction
reversible: false
product: 169256
kinetic law: 169280
reactant: 169244
product: 169268
name: N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase
fast: false
notes: GENE_ASSOCIATION: b0110 SUBSYSTEM: Murein Recycling
reactant: 169232

169256
type: SpeciesReference
stoichiometry: 1.0
species: 177908

186236
type: LocalParameter
value: 0.0

186234
type: LocalParameter
value: 0.0

186232
type: LocalParameter
value: 1000.0

186230
type: LocalParameter
value: 0.0

169244
type: SpeciesReference
stoichiometry: 1.0
species: 178737

169268
type: SpeciesReference
stoichiometry: 1.0
species: 178095

178095
type: Species
notes: FORMULA: C19H29N2O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid

169232
type: SpeciesReference
stoichiometry: 1.0
species: 178089

178089
type: Species
notes: FORMULA: C34H52N6O19
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide

179831
type: Species
notes: FORMULA: C5H6N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Thymine

178411
type: Species
notes: FORMULA: C8H12NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Dopamine

180651
type: Reaction
kinetic law: 163966
product: 163954
reactant: 163942
notes: GENE_ASSOCIATION: b1927 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: false
name: alpha amylase

185635
type: LocalParameter
value: 0.0

185634
type: LocalParameter
value: 0.0

185632
type: LocalParameter
value: 1000.0

185631
type: LocalParameter
value: 0.0

163954
type: SpeciesReference
stoichiometry: 1.0
species: 178932

178932
type: Species
notes: FORMULA: C36H62O31
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Maltohexaose

163942
type: SpeciesReference
stoichiometry: 1.0
species: 177225

177225
type: Species
notes: FORMULA: C36H62O31
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-4-alpha-D-glucan

184179
type: Reaction
reversible: false
product: 283304
reactant: 283292
product: 283316
fast: false
name: Phospholipase A1 phosphatidylethanolamine n C180 periplasm
product: 283328
reactant: 283280
kinetic law: 283341
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism

283304
type: SpeciesReference
stoichiometry: 1.0
species: 177415

177415
type: Species
notes: FORMULA: C23H48NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180

283292
type: SpeciesReference
stoichiometry: 1.0
species: 179369

179369
type: Species
notes: FORMULA: C41H82N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: phosphatidylethanolamine-dioctadecanoyl-n-C180

283316
type: SpeciesReference
stoichiometry: 1.0
species: 178745

283328
type: SpeciesReference
stoichiometry: 1.0
species: 179255

179255
type: Species
notes: FORMULA: C18H35O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: octadecanoate-n-C180

283280
type: SpeciesReference
stoichiometry: 1.0
species: 178739

198138
type: LocalParameter
value: 0.0

198137
type: LocalParameter
value: 0.0

198135
type: LocalParameter
value: 1000.0

198134
type: LocalParameter
value: 0.0

183896
type: Reaction
reactant: 270428
fast: false
reversible: false
product: 270452
name: 5 nucleotidase dGMP
notes: GENE_ASSOCIATION: ( b2291 or b2744 ) SUBSYSTEM: Nucleotide Salvage Pathway
kinetic law: 270476
product: 270464
reactant: 270440

270428
type: SpeciesReference
stoichiometry: 1.0
species: 178371

178371
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dGMP

270452
type: SpeciesReference
stoichiometry: 1.0
species: 178374

178374
type: Species
notes: FORMULA: C10H13N5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Deoxyguanosine

197034
type: LocalParameter
value: 0.0

197033
type: LocalParameter
value: 0.0

197031
type: LocalParameter
value: 1000.0

197030
type: LocalParameter
value: 0.0

270464
type: SpeciesReference
stoichiometry: 1.0
species: 179463

270440
type: SpeciesReference
stoichiometry: 1.0
species: 178737

178029
type: Species
notes: FORMULA: C5H16N4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Agmatine

177427
type: Species
notes: FORMULA: C20H40O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C140

184044
type: Reaction
name: Phosphatidate phosphatase periplasmic n C181
reactant: 276839
product: 276866
kinetic law: 276879
fast: false
reactant: 276826
notes: GENE_ASSOCIATION: b1278 SUBSYSTEM: Glycerophospholipid Metabolism
reversible: false
product: 276852

276839
type: SpeciesReference
stoichiometry: 1.0
species: 179325

179325
type: Species
notes: FORMULA: C39H71O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate

276866
type: SpeciesReference
stoichiometry: 1.0
species: 179467

197580
type: LocalParameter
value: 0.0

197579
type: LocalParameter
value: 0.0

197576
type: LocalParameter
value: 1000.0

197575
type: LocalParameter
value: 0.0

276826
type: SpeciesReference
stoichiometry: 1.0
species: 178739

276852
type: SpeciesReference
stoichiometry: 1.0
species: 177201

177201
type: Species
notes: FORMULA: C39H72O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181

184566
type: Reaction
kinetic law: 297090
product: 297078
product: 297066
reactant: 297054
notes: GENE_ASSOCIATION: b2261 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
fast: false
reversible: false
name: O succinylbenzoate CoA synthase

199248
type: LocalParameter
value: 0.0

199246
type: LocalParameter
value: 0.0

199244
type: LocalParameter
value: 1000.0

199241
type: LocalParameter
value: 0.0

297078
type: SpeciesReference
stoichiometry: 1.0
species: 179729

297066
type: SpeciesReference
stoichiometry: 1.0
species: 178737

297054
type: SpeciesReference
stoichiometry: 1.0
species: 177589

177589
type: Species
notes: FORMULA: C11H10O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Succinyl-6-hydroxy-2-4-cyclohexadiene-1-carboxylate

179583
type: Species
notes: FORMULA: C8H8NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Pyridoxal-5-phosphate

178292
type: Species
notes: FORMULA: C40H74O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cyclopropane-phosphatidylglycerol-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo

180973
type: Reaction
name: 1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141
reactant: 170211
notes: GENE_ASSOCIATION: b3018 SUBSYSTEM: Glycerophospholipid Metabolism
fast: false
kinetic law: 170261
product: 170248
product: 170236
reversible: false
reactant: 170224

170211
type: SpeciesReference
stoichiometry: 1.0
species: 177317

177317
type: Species
notes: FORMULA: C17H31O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-tetradec-7-enoyl-sn-glycerol-3-phosphate

186355
type: LocalParameter
value: 0.0

186353
type: LocalParameter
value: 0.0

186351
type: LocalParameter
value: 1000.0

186349
type: LocalParameter
value: 0.0

170248
type: SpeciesReference
stoichiometry: 1.0
species: 179307

179307
type: Species
notes: FORMULA: C31H55O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate

170236
type: SpeciesReference
stoichiometry: 1.0
species: 177902

170224
type: SpeciesReference
stoichiometry: 1.0
species: 179797

179797
type: Species
notes: FORMULA: C25H45N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cis-tetradec-7-enoyl-acyl-carrier-protein-n-C141

184864
type: Reaction
reactant: 309298
notes: GENE_ASSOCIATION: SUBSYSTEM:
product: 309334
product: 309358
reversible: false
fast: false
product: 309346
reactant: 309310
name: Cyd-II
product: 309370
kinetic law: 309382
reactant: 309322

309298
type: SpeciesReference
stoichiometry: 0.2
species: 178743

309334
type: SpeciesReference
stoichiometry: 1.0
species: 178737

309358
type: SpeciesReference
stoichiometry: 1.0
species: 179595

309346
type: SpeciesReference
stoichiometry: 0.2
species: 178745

309310
type: SpeciesReference
stoichiometry: 0.5
species: 179229

309370
type: SpeciesReference
stoichiometry: 0.01282051
species: 180242

200860
type: LocalParameter
value: 0.0

200859
type: LocalParameter
value: 0.0

200857
type: LocalParameter
value: 1000.0

200856
type: LocalParameter
value: 0.0

309322
type: SpeciesReference
stoichiometry: 1.0
species: 179597

184575
type: Reaction
kinetic law: 297428
reactant: 297392
product: 297404
name: succinatefumarate antiporter periplasm
reversible: true
reactant: 297380
product: 297416
fast: false
notes: GENE_ASSOCIATION: ( b4123 or b0621 or b4138 ) SUBSYSTEM: Transport Inner Membrane

199305
type: LocalParameter
value: 0.0

199302
type: LocalParameter
value: 0.0

199299
type: LocalParameter
value: 1000.0

199296
type: LocalParameter
value: -1000.0

297392
type: SpeciesReference
stoichiometry: 1.0
species: 179731

297404
type: SpeciesReference
stoichiometry: 1.0
species: 178575

297380
type: SpeciesReference
stoichiometry: 1.0
species: 178577

297416
type: SpeciesReference
stoichiometry: 1.0
species: 179735

184440
type: Reaction
product: 291693
fast: false
product: 291717
product: 291705
reactant: 291681
kinetic law: 291729
reversible: false
reactant: 291669
name: quinol monooxygenase Ubiquinol 8
notes: GENE_ASSOCIATION: b3029 SUBSYSTEM: Oxidative Phosphorylation

291693
type: SpeciesReference
stoichiometry: 2.0
species: 178743

291717
type: SpeciesReference
stoichiometry: 1.0
species: 179595

291705
type: SpeciesReference
stoichiometry: 2.0
species: 179235

179235
type: Species
notes: FORMULA: O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Superoxide-anion

291681
type: SpeciesReference
stoichiometry: 1.0
species: 179597

198707
type: LocalParameter
value: 0.0

198706
type: LocalParameter
value: 0.0

198704
type: LocalParameter
value: 1000.0

198703
type: LocalParameter
value: 0.0

291669
type: SpeciesReference
stoichiometry: 2.0
species: 179229

182484
type: Reaction
kinetic law: 238119
product: 238107
reactant: 238094
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Glycerol 2 phosphate transport via diffusion extracellular to periplasm

193575
type: LocalParameter
value: 0.0

193573
type: LocalParameter
value: 0.0

193571
type: LocalParameter
value: 1000.0

193570
type: LocalParameter
value: -1000.0

238107
type: SpeciesReference
stoichiometry: 1.0
species: 178689

178689
type: Species
notes: FORMULA: C3H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Glycerol-2-phosphate

238094
type: SpeciesReference
stoichiometry: 1.0
species: 178688

182096
type: Reaction
kinetic law: 221113
product: 221101
product: 221089
reactant: 221076
notes: GENE_ASSOCIATION: ( b0825 or b3946 ) SUBSYSTEM: GlycolysisGluconeogenesis
fast: false
reversible: true
name: fructose 6 phosphate aldolase

191765
type: LocalParameter
value: 0.0

191763
type: LocalParameter
value: 0.0

191762
type: LocalParameter
value: 1000.0

191761
type: LocalParameter
value: -1000.0

221101
type: SpeciesReference
stoichiometry: 1.0
species: 178581

178581
type: Species
notes: FORMULA: C3H5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glyceraldehyde-3-phosphate

221089
type: SpeciesReference
stoichiometry: 1.0
species: 178378

221076
type: SpeciesReference
stoichiometry: 1.0
species: 178507

180726
type: Reaction
reactant: 165356
kinetic law: 165404
name: N Acetyl D glucosamine transport via PEPPyr PTS periplasm
reversible: false
reactant: 165368
product: 165392
notes: GENE_ASSOCIATION: ( ( b2417 and b1101 and b2415 and b2416 ) or ( b0679 and b2415 and b2416 ) ) SUBSYSTEM: Transport Inner Membrane
fast: false
product: 165380

165356
type: SpeciesReference
stoichiometry: 1.0
species: 177962

177962
type: Species
notes: FORMULA: C8H15NO6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: N-Acetyl-D-glucosamine

185760
type: LocalParameter
value: 0.0

185759
type: LocalParameter
value: 0.0

185757
type: LocalParameter
value: 1000.0

185756
type: LocalParameter
value: 0.0

165368
type: SpeciesReference
stoichiometry: 1.0
species: 179379

165392
type: SpeciesReference
stoichiometry: 1.0
species: 179589

165380
type: SpeciesReference
stoichiometry: 1.0
species: 177957

177957
type: Species
notes: FORMULA: C8H14NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-D-glucosamine-6-phosphate

184290
type: Reaction
product: 288276
notes: GENE_ASSOCIATION: ( b3544 and b3543 and b3542 and b3541 and b3540 ) SUBSYSTEM: Transport Inner Membrane
kinetic law: 288313
fast: false
reversible: false
product: 288300
reactant: 288252
reactant: 288228
name: L Prolinylglycine Pro Gly transport via ABC system periplasm
product: 288264
product: 288288
reactant: 288240

288276
type: SpeciesReference
stoichiometry: 1.0
species: 178743

198454
type: LocalParameter
value: 0.0

198453
type: LocalParameter
value: 0.0

198452
type: LocalParameter
value: 1000.0

198451
type: LocalParameter
value: 0.0

288300
type: SpeciesReference
stoichiometry: 1.0
species: 179537

179537
type: Species
notes: FORMULA: C7H12N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Prolinylglycine

288252
type: SpeciesReference
stoichiometry: 1.0
species: 179541

179541
type: Species
notes: FORMULA: C7H12N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Prolinylglycine

288228
type: SpeciesReference
stoichiometry: 1.0
species: 178173

288264
type: SpeciesReference
stoichiometry: 1.0
species: 178016

288288
type: SpeciesReference
stoichiometry: 1.0
species: 179463

288240
type: SpeciesReference
stoichiometry: 1.0
species: 178737

183119
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Methylglyoxal Metabolism
product: 251750
reactant: 251714
fast: false
reversible: true
product: 251738
kinetic law: 251762
reactant: 251726
reactant: 251702
name: lacaldehyde reductase R propane 1 2 diol forming

251750
type: SpeciesReference
stoichiometry: 1.0
species: 179167

251714
type: SpeciesReference
stoichiometry: 1.0
species: 178852

178852
type: Species
notes: FORMULA: C3H6O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Lactaldehyde

251738
type: SpeciesReference
stoichiometry: 1.0
species: 177204

177204
type: Species
notes: FORMULA: C3H8O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-Propane-1-2-diol

195108
type: LocalParameter
value: 0.0

195107
type: LocalParameter
value: 0.0

195105
type: LocalParameter
value: 1000.0

195104
type: LocalParameter
value: -1000.0

251726
type: SpeciesReference
stoichiometry: 1.0
species: 179169

251702
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182138
type: Reaction
fast: false
product: 223372
reversible: false
notes: GENE_ASSOCIATION: ( b1805 or b1701 ) SUBSYSTEM: Cell Envelope Biosynthesis
reactant: 223312
product: 223348
product: 223360
reactant: 223300
name: fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling
reactant: 223324
kinetic law: 223384
reactant: 223288
product: 223336

223372
type: SpeciesReference
stoichiometry: 1.0
species: 179501

223312
type: SpeciesReference
stoichiometry: 1.0
species: 178745

223348
type: SpeciesReference
stoichiometry: 1.0
species: 178743

223360
type: SpeciesReference
stoichiometry: 1.0
species: 179275

179275
type: Species
notes: FORMULA: C39H64N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Octadecenoyl-CoA-n-C181CoA

223300
type: SpeciesReference
stoichiometry: 1.0
species: 178283

223324
type: SpeciesReference
stoichiometry: 1.0
species: 179261

179261
type: Species
notes: FORMULA: C18H33O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: octadecenoate-n-C181

191905
type: LocalParameter
value: 0.0

191903
type: LocalParameter
value: 0.0

191902
type: LocalParameter
value: 1000.0

191901
type: LocalParameter
value: 0.0

223288
type: SpeciesReference
stoichiometry: 1.0
species: 178173

223336
type: SpeciesReference
stoichiometry: 1.0
species: 178085

183836
type: Reaction
product: 268645
reactant: 268597
product: 268609
fast: false
kinetic law: 268657
notes: GENE_ASSOCIATION: ( ( b1465 and b1466 and b1467 and b1468 ) or ( b1224 and b1225 and b1226 and b1227 ) ) SUBSYSTEM: Oxidative Phosphorylation
reversible: false
name: Nitrate reductase Ubiquinol 8 periplasm
reactant: 268585
reactant: 268573
product: 268633
product: 268621

268645
type: SpeciesReference
stoichiometry: 1.0
species: 179595

268597
type: SpeciesReference
stoichiometry: 1.0
species: 179597

268609
type: SpeciesReference
stoichiometry: 1.0
species: 178737

196832
type: LocalParameter
value: 0.0

196829
type: LocalParameter
value: 0.0

196827
type: LocalParameter
value: 1000.0

196826
type: LocalParameter
value: 0.0

268585
type: SpeciesReference
stoichiometry: 1.0
species: 179203

179203
type: Species
notes: FORMULA: NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nitrate

268573
type: SpeciesReference
stoichiometry: 2.0
species: 178743

268633
type: SpeciesReference
stoichiometry: 1.0
species: 179197

179197
type: Species
notes: FORMULA: NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Nitrite

268621
type: SpeciesReference
stoichiometry: 2.0
species: 178745

181986
type: Reaction
kinetic law: 219255
reactant: 219243
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: sulfur dioxide exchange

191547
type: LocalParameter
value: 0.0

191546
type: LocalParameter
value: 0.0

191544
type: LocalParameter
value: 1000.0

191543
type: LocalParameter
value: 0.0

219243
type: SpeciesReference
stoichiometry: 1.0
species: 179699

179699
type: Species
notes: FORMULA: O2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: sulfur-dioxide

184618
type: Reaction
reactant: 299189
reversible: false
reactant: 299177
name: NAD P transhydrogenase periplasm
kinetic law: 299237
notes: GENE_ASSOCIATION: ( b1602 and b1603 ) SUBSYSTEM: Oxidative Phosphorylation
product: 299225
reactant: 299165
product: 299201
product: 299213
fast: false

299189
type: SpeciesReference
stoichiometry: 1.0
species: 179171

299177
type: SpeciesReference
stoichiometry: 1.0
species: 179169

199595
type: LocalParameter
value: 0.0

199592
type: LocalParameter
value: 0.0

199589
type: LocalParameter
value: 1000.0

199586
type: LocalParameter
value: 0.0

299225
type: SpeciesReference
stoichiometry: 1.0
species: 179173

299165
type: SpeciesReference
stoichiometry: 2.0
species: 178745

299201
type: SpeciesReference
stoichiometry: 2.0
species: 178743

299213
type: SpeciesReference
stoichiometry: 1.0
species: 179167

181759
type: Reaction
kinetic law: 215421
reactant: 215409
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Deoxyuridine exchange

190586
type: LocalParameter
value: 0.0

190583
type: LocalParameter
value: 0.0

190580
type: LocalParameter
value: 1000.0

190579
type: LocalParameter
value: 0.0

215409
type: SpeciesReference
stoichiometry: 1.0
species: 178480

178480
type: Species
notes: FORMULA: C9H12N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Deoxyuridine

184441
type: Reaction
product: 291777
reversible: false
name: quinol monooxygenase menaquinol 8
product: 291789
fast: false
product: 291765
notes: GENE_ASSOCIATION: b3029 SUBSYSTEM: Oxidative Phosphorylation
reactant: 291741
kinetic law: 291801
reactant: 291753

291777
type: SpeciesReference
stoichiometry: 1.0
species: 179105

179105
type: Species
notes: FORMULA: C51H72O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Menaquinone-8

291789
type: SpeciesReference
stoichiometry: 2.0
species: 179235

291765
type: SpeciesReference
stoichiometry: 2.0
species: 178743

291741
type: SpeciesReference
stoichiometry: 1.0
species: 179103

179103
type: Species
notes: FORMULA: C51H74O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Menaquinol-8

198719
type: LocalParameter
value: 0.0

198718
type: LocalParameter
value: 0.0

198709
type: LocalParameter
value: 1000.0

198708
type: LocalParameter
value: 0.0

291753
type: SpeciesReference
stoichiometry: 2.0
species: 179229

181851
type: Reaction
kinetic law: 217080
reactant: 217068
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Hydrogen sulfide exchange

191051
type: LocalParameter
value: 0.0

191050
type: LocalParameter
value: 0.0

191048
type: LocalParameter
value: 1000.0

191047
type: LocalParameter
value: 0.0

217068
type: SpeciesReference
stoichiometry: 1.0
species: 178741

178741
type: Species
notes: FORMULA: H2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Hydrogen-sulfide

181550
type: Reaction
name: 2 5 diketo D gluconate reductase NADH
product: 206804
reactant: 206767
reactant: 206780
notes: GENE_ASSOCIATION: b3553 SUBSYSTEM: Alternate Carbon Metabolism
kinetic law: 206816
reversible: false
product: 206792
reactant: 206755
fast: false

206804
type: SpeciesReference
stoichiometry: 1.0
species: 179167

206767
type: SpeciesReference
stoichiometry: 1.0
species: 178743

206780
type: SpeciesReference
stoichiometry: 1.0
species: 179169

189012
type: LocalParameter
value: 0.0

189011
type: LocalParameter
value: 0.0

189009
type: LocalParameter
value: 1000.0

189008
type: LocalParameter
value: 0.0

206792
type: SpeciesReference
stoichiometry: 1.0
species: 177878

177878
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-Dehydro-D-gluconate

206755
type: SpeciesReference
stoichiometry: 1.0
species: 177380

177380
type: Species
notes: FORMULA: C6H7O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-5-diketo-D-gluconate

183089
type: Reaction
reactant: 251096
product: 251121
notes: GENE_ASSOCIATION: ( b1250 or ( b1291 and b3290 and b1363 ) or b3747 or ( b1291 and b3290 and b3849 ) ) SUBSYSTEM: Inorganic Ion Transport and Metabolism
name: potassium transport in via proton symport periplasm
product: 251108
reversible: false
fast: false
kinetic law: 251133
reactant: 251084

251096
type: SpeciesReference
stoichiometry: 1.0
species: 178823

178823
type: Species
notes: FORMULA: K
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: potassium

251121
type: SpeciesReference
stoichiometry: 1.0
species: 178821

178821
type: Species
notes: FORMULA: K
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: potassium

251108
type: SpeciesReference
stoichiometry: 1.0
species: 178743

195058
type: LocalParameter
value: 0.0

195057
type: LocalParameter
value: 0.0

195055
type: LocalParameter
value: 1000.0

195054
type: LocalParameter
value: 0.0

251084
type: SpeciesReference
stoichiometry: 1.0
species: 178745

181624
type: Reaction
fast: false
kinetic law: 211398
product: 211386
product: 211374
reactant: 211338
reactant: 211350
reversible: false
name: enterobacterial common antigen x4 O antigen ligase periplasm
notes: GENE_ASSOCIATION: b3622 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
product: 211362

189417
type: LocalParameter
value: 0.0

189415
type: LocalParameter
value: 0.0

189413
type: LocalParameter
value: 1000.0

189410
type: LocalParameter
value: 0.0

211386
type: SpeciesReference
stoichiometry: 1.0
species: 180002

211374
type: SpeciesReference
stoichiometry: 1.0
species: 178745

211338
type: SpeciesReference
stoichiometry: 1.0
species: 178289

211350
type: SpeciesReference
stoichiometry: 1.0
species: 178490

178490
type: Species
notes: FORMULA: C151H234N12O67P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: enterobacterial-common-antigen-x4-undecaprenyl-diphosphate

211362
type: SpeciesReference
stoichiometry: 1.0
species: 178489

178489
type: Species
notes: FORMULA: C272H447N14O160P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A

180579
type: Reaction
kinetic law: 162308
product: 162296
reactant: 162284
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: 3UMP transport via diffusion extracellular to periplasm

185515
type: LocalParameter
value: 0.0

185514
type: LocalParameter
value: 0.0

185513
type: LocalParameter
value: 1000.0

185511
type: LocalParameter
value: -1000.0

162296
type: SpeciesReference
stoichiometry: 1.0
species: 177834

177834
type: Species
notes: FORMULA: C9H11N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 3-UMP

162284
type: SpeciesReference
stoichiometry: 1.0
species: 177833

177833
type: Species
notes: FORMULA: C9H11N2O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 3-UMP

180279
type: Reaction
kinetic law: 156243
product: 156231
reactant: 156219
notes: GENE_ASSOCIATION: b4036 SUBSYSTEM: Transport Outer Membrane
fast: false
reversible: false
name: 1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible

184934
type: LocalParameter
value: 0.0

184933
type: LocalParameter
value: 0.0

184931
type: LocalParameter
value: 1000.0

184930
type: LocalParameter
value: 0.0

156231
type: SpeciesReference
stoichiometry: 1.0
species: 177231

177231
type: Species
notes: FORMULA: C36H62O31
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-4-alpha-D-glucan

156219
type: SpeciesReference
stoichiometry: 1.0
species: 177228

177228
type: Species
notes: FORMULA: C36H62O31
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 1-4-alpha-D-glucan

182139
type: Reaction
name: fatty acid CoA ligase hexanoate transport via vectoral Co A coupling
product: 223468
fast: false
reactant: 223396
kinetic law: 223493
reversible: false
notes: GENE_ASSOCIATION: ( b1805 or b1701 ) SUBSYSTEM: Cell Envelope Biosynthesis
product: 223481
product: 223456
reactant: 223432
reactant: 223420
product: 223444
reactant: 223408

223468
type: SpeciesReference
stoichiometry: 1.0
species: 178790

178790
type: Species
notes: FORMULA: C27H42N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hexanoyl-CoA-n-C60CoA

223396
type: SpeciesReference
stoichiometry: 1.0
species: 178173

191910
type: LocalParameter
value: 0.0

191908
type: LocalParameter
value: 0.0

191907
type: LocalParameter
value: 1000.0

191906
type: LocalParameter
value: 0.0

223481
type: SpeciesReference
stoichiometry: 1.0
species: 179501

223456
type: SpeciesReference
stoichiometry: 1.0
species: 178743

223432
type: SpeciesReference
stoichiometry: 1.0
species: 178786

178786
type: Species
notes: FORMULA: C6H11O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Hexanoate-n-C60

223420
type: SpeciesReference
stoichiometry: 1.0
species: 178745

223444
type: SpeciesReference
stoichiometry: 1.0
species: 178085

223408
type: SpeciesReference
stoichiometry: 1.0
species: 178283

178496
type: Species
notes: FORMULA: C30H27N3O15
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Enterochelin

178502
type: Species
notes: FORMULA: C2H5O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: ethanesulfonate

180444
type: Reaction
kinetic law: 159236
product: 159224
reactant: 159212
notes: GENE_ASSOCIATION: ( b0241 or b1377 or b2215 or b0929 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: 3GMP transport via diffusion extracellular to periplasm

185284
type: LocalParameter
value: 0.0

185283
type: LocalParameter
value: 0.0

185281
type: LocalParameter
value: 1000.0

185280
type: LocalParameter
value: -1000.0

159224
type: SpeciesReference
stoichiometry: 1.0
species: 177649

177649
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 3-GMP

159212
type: SpeciesReference
stoichiometry: 1.0
species: 177646

177646
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 3-GMP

182004
type: Reaction
kinetic law: 219544
reactant: 219532
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: L Threonine O 3 phosphate exchange

191610
type: LocalParameter
value: 0.0

191608
type: LocalParameter
value: 0.0

191607
type: LocalParameter
value: 1000.0

191606
type: LocalParameter
value: 0.0

219532
type: SpeciesReference
stoichiometry: 1.0
species: 179825

179825
type: Species
notes: FORMULA: C4H8NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Threonine-O-3-phosphate

177213
type: Species
notes: FORMULA: C3H8O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-Propane-1-2-diol

180227
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Xylulose

180672
type: Reaction
notes: GENE_ASSOCIATION: ( b2221 and b2222 ) SUBSYSTEM: Alternate Carbon Metabolism
product: 164353
reactant: 164329
name: acetyl CoAacetoacetyl CoA transferase
reactant: 164317
product: 164341
reversible: false
kinetic law: 164365
fast: false

164353
type: SpeciesReference
stoichiometry: 1.0
species: 177926

164329
type: SpeciesReference
stoichiometry: 1.0
species: 177941

164317
type: SpeciesReference
stoichiometry: 1.0
species: 177930

164341
type: SpeciesReference
stoichiometry: 1.0
species: 177921

185670
type: LocalParameter
value: 0.0

185669
type: LocalParameter
value: 0.0

185667
type: LocalParameter
value: 1000.0

185666
type: LocalParameter
value: 0.0

178400
type: Species
notes: FORMULA: C6H9O6PS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-3-diketo-5-methylthio-1-phosphopentane

182316
type: Reaction
kinetic law: 231318
reactant: 231257
reactant: 231233
product: 231294
name: sn glycerol 3 phosphoglycerol transport via ABC system periplasm
product: 231306
product: 231282
product: 231270
reactant: 231245
notes: GENE_ASSOCIATION: ( b3452 and b3453 and b3450 and b3451 ) SUBSYSTEM: Transport Inner Membrane
reversible: false
fast: false

192541
type: LocalParameter
value: 0.0

192538
type: LocalParameter
value: 0.0

192535
type: LocalParameter
value: 1000.0

192532
type: LocalParameter
value: 0.0

231257
type: SpeciesReference
stoichiometry: 1.0
species: 178737

231233
type: SpeciesReference
stoichiometry: 1.0
species: 178173

231294
type: SpeciesReference
stoichiometry: 1.0
species: 178743

231306
type: SpeciesReference
stoichiometry: 1.0
species: 179463

231282
type: SpeciesReference
stoichiometry: 1.0
species: 178588

231270
type: SpeciesReference
stoichiometry: 1.0
species: 178016

231245
type: SpeciesReference
stoichiometry: 1.0
species: 178590

178590
type: Species
notes: FORMULA: C6H14O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Glycerophosphoglycerol

183476
type: Reaction
reactant: 258556
product: 258607
product: 258619
kinetic law: 258631
product: 258582
product: 258595
reactant: 258569
fast: false
notes: GENE_ASSOCIATION: ( b4034 and b4033 and b4032 and b4035 ) SUBSYSTEM: Transport Inner Membrane
reversible: false
name: maltotetraose transport via ABC system periplasm
reactant: 258542

258556
type: SpeciesReference
stoichiometry: 1.0
species: 178737

258607
type: SpeciesReference
stoichiometry: 1.0
species: 178950

258619
type: SpeciesReference
stoichiometry: 1.0
species: 179463

195628
type: LocalParameter
value: 0.0

195627
type: LocalParameter
value: 0.0

195626
type: LocalParameter
value: 1000.0

195624
type: LocalParameter
value: 0.0

258582
type: SpeciesReference
stoichiometry: 1.0
species: 178016

258595
type: SpeciesReference
stoichiometry: 1.0
species: 178743

258569
type: SpeciesReference
stoichiometry: 1.0
species: 178954

178954
type: Species
notes: FORMULA: C24H42O21
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Maltotetraose

258542
type: SpeciesReference
stoichiometry: 1.0
species: 178173

178359
type: Species
notes: FORMULA: C9H12N3O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: dCMP

181458
type: Reaction
notes: GENE_ASSOCIATION: b2810 SUBSYSTEM: Cysteine Metabolism
reactant: 201111
reversible: false
product: 201135
kinetic law: 201159
fast: false
product: 201147
name: L cysteine sulfinic acid desulfurase
reactant: 201123

201111
type: SpeciesReference
stoichiometry: 1.0
species: 177831

177831
type: Species
notes: FORMULA: C3H5NO4S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Sulfino-L-alanine

201135
type: SpeciesReference
stoichiometry: 1.0
species: 178052

178052
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Alanine

188620
type: LocalParameter
value: 0.0

188619
type: LocalParameter
value: 0.0

188618
type: LocalParameter
value: 1000.0

188617
type: LocalParameter
value: 0.0

201147
type: SpeciesReference
stoichiometry: 1.0
species: 179697

201123
type: SpeciesReference
stoichiometry: 2.0
species: 178743

181323
type: Reaction
kinetic law: 187283
product: 187271
reactant: 187259
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: choline transport via diffusion extracellular to periplasm

188119
type: LocalParameter
value: 0.0

188117
type: LocalParameter
value: 0.0

188116
type: LocalParameter
value: 1000.0

188113
type: LocalParameter
value: -1000.0

187271
type: SpeciesReference
stoichiometry: 1.0
species: 178247

178247
type: Species
notes: FORMULA: C5H14NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Choline

187259
type: SpeciesReference
stoichiometry: 1.0
species: 178245

178245
type: Species
notes: FORMULA: C5H14NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Choline

181712
type: Reaction
kinetic law: 214403
reactant: 214391
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: L Aspartate exchange

190239
type: LocalParameter
value: 0.0

190236
type: LocalParameter
value: 0.0

190233
type: LocalParameter
value: 1000.0

190230
type: LocalParameter
value: 0.0

214391
type: SpeciesReference
stoichiometry: 1.0
species: 178166

178166
type: Species
notes: FORMULA: C4H6NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Aspartate

178092
type: Species
notes: FORMULA: C37H57N7O20
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide

177963
type: Species
notes: FORMULA: C8H14O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 6-Acetyl-D-glucose

183777
type: Reaction
kinetic law: 266777
product: 266765
reactant: 266753
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: sodium transport via diffusion extracellular to periplasm

196641
type: LocalParameter
value: 0.0

196639
type: LocalParameter
value: 0.0

196637
type: LocalParameter
value: 1000.0

196636
type: LocalParameter
value: -1000.0

266765
type: SpeciesReference
stoichiometry: 1.0
species: 179159

179159
type: Species
notes: FORMULA: Na
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Sodium

266753
type: SpeciesReference
stoichiometry: 1.0
species: 179157

179157
type: Species
notes: FORMULA: Na
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Sodium

181779
type: Reaction
kinetic law: 215759
reactant: 215747
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Fe III hydoxamate unloaded exchange

190695
type: LocalParameter
value: 0.0

190694
type: LocalParameter
value: 0.0

190691
type: LocalParameter
value: 1000.0

190690
type: LocalParameter
value: 0.0

215747
type: SpeciesReference
stoichiometry: 1.0
species: 178533

178533
type: Species
notes: FORMULA: C9H18O6N3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Fe-III-hydoxamate-unloaded

182370
type: Reaction
reactant: 233330
kinetic law: 233378
fast: false
product: 233366
reactant: 233342
name: D galactose transport in via proton symport periplasm
product: 233354
notes: GENE_ASSOCIATION: b2943 SUBSYSTEM: Transport Inner Membrane
reversible: false

233330
type: SpeciesReference
stoichiometry: 1.0
species: 178608

178608
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Galactose

192940
type: LocalParameter
value: 0.0

192937
type: LocalParameter
value: 0.0

192934
type: LocalParameter
value: 1000.0

192931
type: LocalParameter
value: 0.0

233366
type: SpeciesReference
stoichiometry: 1.0
species: 178743

233342
type: SpeciesReference
stoichiometry: 1.0
species: 178745

233354
type: SpeciesReference
stoichiometry: 1.0
species: 178606

178606
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Galactose

184817
type: Reaction
product: 307509
reactant: 307473
product: 307545
notes: GENE_ASSOCIATION: ( b3454 and b3455 and b3457 and b3460 and b3456 ) SUBSYSTEM: Transport Inner Membrane
reactant: 307497
fast: false
reversible: false
product: 307533
reactant: 307485
name: L valine transport via ABC system periplasm
product: 307521
kinetic law: 307557

307509
type: SpeciesReference
stoichiometry: 1.0
species: 178016

307473
type: SpeciesReference
stoichiometry: 1.0
species: 178173

307545
type: SpeciesReference
stoichiometry: 1.0
species: 180161

180161
type: Species
notes: FORMULA: C5H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Valine

307497
type: SpeciesReference
stoichiometry: 1.0
species: 180167

307533
type: SpeciesReference
stoichiometry: 1.0
species: 179463

307485
type: SpeciesReference
stoichiometry: 1.0
species: 178737

307521
type: SpeciesReference
stoichiometry: 1.0
species: 178743

200683
type: LocalParameter
value: 0.0

200680
type: LocalParameter
value: 0.0

200679
type: LocalParameter
value: 1000.0

200676
type: LocalParameter
value: 0.0

179992
type: Species
notes: FORMULA: C87H139N7O23P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine

178738
type: Species
notes: FORMULA: H2O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: H2O

180997
type: Reaction
notes: GENE_ASSOCIATION: b2587 SUBSYSTEM: Transport Inner Membrane
name: 2 oxoglutarate reversible transport via symport periplasm
fast: false
reversible: true
reactant: 170996
product: 171020
reactant: 171008
product: 171032
kinetic law: 171044

170996
type: SpeciesReference
stoichiometry: 1.0
species: 178041

178041
type: Species
notes: FORMULA: C5H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Oxoglutarate

171020
type: SpeciesReference
stoichiometry: 1.0
species: 178038

171008
type: SpeciesReference
stoichiometry: 1.0
species: 178745

171032
type: SpeciesReference
stoichiometry: 1.0
species: 178743

186439
type: LocalParameter
value: 0.0

186437
type: LocalParameter
value: 0.0

186435
type: LocalParameter
value: 1000.0

186433
type: LocalParameter
value: -1000.0

180185
type: Species
notes: FORMULA: C10H11N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Xanthosine-5-phosphate

183643
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Murein Biosynthesis
name: murein L D carboxypeptidase murein4p4p periplasm
product: 262797
kinetic law: 262823
reactant: 262771
fast: false
product: 262810
reversible: false
reactant: 262784

262797
type: SpeciesReference
stoichiometry: 1.0
species: 178050

178050
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Alanine

196166
type: LocalParameter
value: 0.0

196164
type: LocalParameter
value: 0.0

196162
type: LocalParameter
value: 1000.0

196160
type: LocalParameter
value: 0.0

262771
type: SpeciesReference
stoichiometry: 1.0
species: 178739

262810
type: SpeciesReference
stoichiometry: 1.0
species: 179121

179121
type: Species
notes: FORMULA: C71H109N13O39
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-linked-disacharide-tetrapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain

262784
type: SpeciesReference
stoichiometry: 1.0
species: 179123

179123
type: Species
notes: FORMULA: C74H114N14O40
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-linked-disacharide-tetrapeptide-murein-units-uncrosslinked-middle-of-chain

181645
type: Reaction
reversible: false
name: enterochelin synthase
reactant: 212459
notes: GENE_ASSOCIATION: b0583 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
kinetic law: 212519
product: 212507
product: 212495
reactant: 212471
product: 212483
fast: false

212459
type: SpeciesReference
stoichiometry: 3.0
species: 177366

177366
type: Species
notes: FORMULA: C17H17N5O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-3-Dihydroxybenzoyl-adenylate

189585
type: LocalParameter
value: 0.0

189583
type: LocalParameter
value: 0.0

189581
type: LocalParameter
value: 1000.0

189578
type: LocalParameter
value: 0.0

212507
type: SpeciesReference
stoichiometry: 9.0
species: 178743

212495
type: SpeciesReference
stoichiometry: 1.0
species: 178494

178494
type: Species
notes: FORMULA: C30H27N3O15
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Enterochelin

212471
type: SpeciesReference
stoichiometry: 3.0
species: 179677

179677
type: Species
notes: FORMULA: C13H19N6O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-seryl-AMP

212483
type: SpeciesReference
stoichiometry: 6.0
species: 178085

184504
type: Reaction
fast: false
name: D sorbitol transport via PEPPyr PTS periplasm
notes: GENE_ASSOCIATION: ( b2415 and b2416 and b2702 and b2704 and b2703 ) SUBSYSTEM: Transport Inner Membrane
reactant: 294450
reactant: 294462
reversible: false
product: 294486
product: 294474
kinetic law: 294498

294450
type: SpeciesReference
stoichiometry: 1.0
species: 179379

294462
type: SpeciesReference
stoichiometry: 1.0
species: 179653

179653
type: Species
notes: FORMULA: C6H14O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Sorbitol

294486
type: SpeciesReference
stoichiometry: 1.0
species: 179649

179649
type: Species
notes: FORMULA: C6H13O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Sorbitol-6-phosphate

294474
type: SpeciesReference
stoichiometry: 1.0
species: 179589

198931
type: LocalParameter
value: 0.0

198930
type: LocalParameter
value: 0.0

198928
type: LocalParameter
value: 1000.0

198927
type: LocalParameter
value: 0.0

180465
type: Reaction
kinetic law: 159574
product: 159562
product: 159550
reactant: 159538
notes: GENE_ASSOCIATION: ( b0180 or b0954 ) SUBSYSTEM: Cell Envelope Biosynthesis
fast: false
reversible: false
name: 3 hydroxyacyl acyl carrier protein dehydratase n C161

185320
type: LocalParameter
value: 0.0

185319
type: LocalParameter
value: 0.0

185318
type: LocalParameter
value: 1000.0

185316
type: LocalParameter
value: 0.0

159562
type: SpeciesReference
stoichiometry: 1.0
species: 179765

179765
type: Species
notes: FORMULA: C27H47N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-3-cis-9-palmitoleoyl-acyl-carrier-protein

159550
type: SpeciesReference
stoichiometry: 1.0
species: 178737

159538
type: SpeciesReference
stoichiometry: 1.0
species: 177673

177673
type: Species
notes: FORMULA: C27H49N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-3-hydroxy-cis-palm-9-eoyl-acyl-carrier-protein

178517
type: Species
notes: FORMULA: C6H10O12P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Fructose-1-6-bisphosphate

184687
type: Reaction
kinetic law: 302121
product: 302109
reactant: 302097
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: trehalose transport via diffusion extracellular to periplasm

200033
type: LocalParameter
value: 0.0

200030
type: LocalParameter
value: 0.0

200027
type: LocalParameter
value: 1000.0

200026
type: LocalParameter
value: -1000.0

302109
type: SpeciesReference
stoichiometry: 1.0
species: 179874

302097
type: SpeciesReference
stoichiometry: 1.0
species: 179872

179872
type: Species
notes: FORMULA: C12H22O11
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Trehalose

179549
type: Species
notes: FORMULA: C34H65N1O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylserine-ditetradecanoyl-n-C140

179968
type: Species
notes: FORMULA: C31H51N3O19P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-3-O-3-hydroxytetradecanoyl-N-acetylglucosamine

184322
type: Reaction
fast: false
product: 289543
product: 289530
reversible: false
reactant: 289506
notes: GENE_ASSOCIATION: b4055 SUBSYSTEM: Glycine and Serine Metabolism
name: phospho L serine phosphatase periplasmic
reactant: 289518
kinetic law: 289555

289543
type: SpeciesReference
stoichiometry: 1.0
species: 179675

289530
type: SpeciesReference
stoichiometry: 1.0
species: 179467

289506
type: SpeciesReference
stoichiometry: 1.0
species: 178739

289518
type: SpeciesReference
stoichiometry: 1.0
species: 179571

179571
type: Species
notes: FORMULA: C3H6NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: O-Phospho-L-serine

198543
type: LocalParameter
value: 0.0

198542
type: LocalParameter
value: 0.0

198540
type: LocalParameter
value: 1000.0

198539
type: LocalParameter
value: 0.0

182814
type: Reaction
kinetic law: 245385
product: 245373
reactant: 245360
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: mercury Hg2 transport via diffusion extracellular to periplasm

194573
type: LocalParameter
value: 0.0

194572
type: LocalParameter
value: 0.0

194570
type: LocalParameter
value: 1000.0

194569
type: LocalParameter
value: -1000.0

245373
type: SpeciesReference
stoichiometry: 1.0
species: 178763

245360
type: SpeciesReference
stoichiometry: 1.0
species: 178762

178762
type: Species
notes: FORMULA: Hg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Hg2

178916
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Malate

182231
type: Reaction
reversible: false
product: 227863
reactant: 227815
fast: false
product: 227887
reactant: 227827
kinetic law: 227899
reactant: 227839
notes: GENE_ASSOCIATION: ( b0153 and b0151 and b0152 ) SUBSYSTEM: Inorganic Ion Transport and Metabolism
product: 227851
name: ferroxamine transport via ABC system periplasm
product: 227875

227863
type: SpeciesReference
stoichiometry: 1.0
species: 178544

227815
type: SpeciesReference
stoichiometry: 1.0
species: 178173

227887
type: SpeciesReference
stoichiometry: 1.0
species: 179463

227827
type: SpeciesReference
stoichiometry: 1.0
species: 178546

178546
type: Species
notes: FORMULA: C25H46FeN6O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: ferroxamine

192223
type: LocalParameter
value: 0.0

192222
type: LocalParameter
value: 0.0

192220
type: LocalParameter
value: 1000.0

192219
type: LocalParameter
value: 0.0

227839
type: SpeciesReference
stoichiometry: 1.0
species: 178737

227851
type: SpeciesReference
stoichiometry: 1.0
species: 178016

227875
type: SpeciesReference
stoichiometry: 1.0
species: 178743

179633
type: Species
notes: FORMULA: C6H12O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Rhamnose

181440
type: Reaction
product: 199255
fast: false
product: 199267
notes: GENE_ASSOCIATION: b0123 SUBSYSTEM: Inorganic Ion Transport and Metabolism
reversible: false
reactant: 199243
name: Cuprous Oxidase Cu1
reactant: 199219
kinetic law: 199291
reactant: 199231

199255
type: SpeciesReference
stoichiometry: 4.0
species: 178317

178317
type: Species
notes: FORMULA: Cu
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Cu2

199267
type: SpeciesReference
stoichiometry: 2.0
species: 178739

199243
type: SpeciesReference
stoichiometry: 1.0
species: 179233

199219
type: SpeciesReference
stoichiometry: 4.0
species: 178320

178320
type: Species
notes: FORMULA: Cu
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Cu

188536
type: LocalParameter
value: 0.0

188534
type: LocalParameter
value: 0.0

188533
type: LocalParameter
value: 1000.0

188532
type: LocalParameter
value: 0.0

199231
type: SpeciesReference
stoichiometry: 4.0
species: 178745

178753
type: Species
notes: FORMULA: C16H29O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hexadecenoate-n-C161

181479
type: Reaction
product: 202497
name: diacylglycerol kinase n C140
product: 202485
reversible: false
product: 202509
reactant: 202473
kinetic law: 202521
reactant: 202461
notes: GENE_ASSOCIATION: b4042 SUBSYSTEM: Glycerophospholipid Metabolism
fast: false

202497
type: SpeciesReference
stoichiometry: 1.0
species: 178743

202485
type: SpeciesReference
stoichiometry: 1.0
species: 178016

202509
type: SpeciesReference
stoichiometry: 1.0
species: 179303

179303
type: Species
notes: FORMULA: C31H59O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-ditetradecanoyl-sn-glycerol-3-phosphate

202473
type: SpeciesReference
stoichiometry: 1.0
species: 178173

188707
type: LocalParameter
value: 0.0

188706
type: LocalParameter
value: 0.0

188705
type: LocalParameter
value: 1000.0

188704
type: LocalParameter
value: 0.0

202461
type: SpeciesReference
stoichiometry: 1.0
species: 177177

177177
type: Species
notes: FORMULA: C31H60O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140

177935
type: Species
notes: FORMULA: C2H4O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Acetaldehyde

183727
type: Reaction
kinetic law: 265196
reactant: 265160
reversible: true
fast: false
name: methenyltetrahydrofolate cyclohydrolase
reactant: 265148
product: 265184
notes: GENE_ASSOCIATION: b0529 SUBSYSTEM: Folate Metabolism
product: 265172

196466
type: LocalParameter
value: 0.0

196464
type: LocalParameter
value: 0.0

196462
type: LocalParameter
value: 1000.0

196459
type: LocalParameter
value: -1000.0

265160
type: SpeciesReference
stoichiometry: 1.0
species: 178998

178998
type: Species
notes: FORMULA: C20H20N7O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-10-Methenyltetrahydrofolate

265148
type: SpeciesReference
stoichiometry: 1.0
species: 178737

265184
type: SpeciesReference
stoichiometry: 1.0
species: 178743

265172
type: SpeciesReference
stoichiometry: 1.0
species: 177172

183548
type: Reaction
kinetic law: 259956
product: 259944
product: 259932
reactant: 259919
notes: GENE_ASSOCIATION: ( b0149 or b3396 ) SUBSYSTEM: Murein Biosynthesis
fast: false
reversible: false
name: murein crosslinking transpeptidase 1B A2pm A2pm periplasm

195834
type: LocalParameter
value: 0.0

195832
type: LocalParameter
value: 0.0

195830
type: LocalParameter
value: 1000.0

195828
type: LocalParameter
value: 0.0

259944
type: SpeciesReference
stoichiometry: 1.0
species: 179139

179139
type: Species
notes: FORMULA: C74H112N14O39
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-disacharide-linked-murein-units-pentapeptide-corsslinked-tripeptide-A2pm-A2pm--middle-of-chain

259932
type: SpeciesReference
stoichiometry: 1.0
species: 178059

259919
type: SpeciesReference
stoichiometry: 1.0
species: 179137

181868
type: Reaction
kinetic law: 217346
reactant: 217334
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: L Idonate exchange

191112
type: LocalParameter
value: 0.0

191110
type: LocalParameter
value: 0.0

191109
type: LocalParameter
value: 1000.0

191107
type: LocalParameter
value: 0.0

217334
type: SpeciesReference
stoichiometry: 1.0
species: 178796

178116
type: Species
notes: FORMULA: C60H116O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: acyl-phosphatidylglycerol-n-C180

181733
type: Reaction
kinetic law: 214865
reactant: 214853
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Cu2 exchange

190402
type: LocalParameter
value: 0.0

190399
type: LocalParameter
value: 0.0

190396
type: LocalParameter
value: 1000.0

190395
type: LocalParameter
value: -1000.0

214853
type: SpeciesReference
stoichiometry: 1.0
species: 178316

178316
type: Species
notes: FORMULA: Cu
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Cu2

181027
type: Reaction
kinetic law: 171941
product: 171929
reactant: 171916
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: L alanine transport via diffusion extracellular to periplasm

186544
type: LocalParameter
value: 0.0

186542
type: LocalParameter
value: 0.0

186540
type: LocalParameter
value: 1000.0

186538
type: LocalParameter
value: -1000.0

171929
type: SpeciesReference
stoichiometry: 1.0
species: 178055

178055
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Alanine

171916
type: SpeciesReference
stoichiometry: 1.0
species: 178053

178053
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Alanine

179829
type: Species
notes: FORMULA: C4H8NO2R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Threonyl-tRNA-Thr

177978
type: Species
notes: FORMULA: C11H18NO9
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetylneuraminate

180915
type: Reaction
kinetic law: 169064
product: 169052
product: 169040
reactant: 169028
notes: GENE_ASSOCIATION: b1131 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
fast: false
reversible: true
name: adenylosuccinate lyase

186215
type: LocalParameter
value: 0.0

186213
type: LocalParameter
value: 0.0

186211
type: LocalParameter
value: 1000.0

186209
type: LocalParameter
value: -1000.0

169052
type: SpeciesReference
stoichiometry: 1.0
species: 178575

169040
type: SpeciesReference
stoichiometry: 1.0
species: 178035

169028
type: SpeciesReference
stoichiometry: 1.0
species: 177378

177378
type: Species
notes: FORMULA: C13H15N4O12P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-2-5-Amino-1-5-phospho-D-ribosyl-imidazole-4-carboxamidosuccinate

183972
type: Reaction
kinetic law: 273487
product: 273475
reactant: 273463
notes: GENE_ASSOCIATION: b3846 SUBSYSTEM: Membrane Lipid Metabolism
fast: false
reversible: false
name: Octadecenoyl coa cis trans isomerization

197299
type: LocalParameter
value: 0.0

197298
type: LocalParameter
value: 0.0

197296
type: LocalParameter
value: 1000.0

197295
type: LocalParameter
value: 0.0

273475
type: SpeciesReference
stoichiometry: 1.0
species: 179273

273463
type: SpeciesReference
stoichiometry: 1.0
species: 179275

177355
type: Species
notes: FORMULA: C3H9N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: 2-3-diaminopropionate

179839
type: Species
notes: FORMULA: C10H14N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Thymidine

181339
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Glycerophospholipid Metabolism
kinetic law: 189491
reactant: 189308
reactant: 189320
fast: false
product: 189454
reversible: false
product: 189332
name: cardiolipin hydrolase periplasm n C141
product: 189344

188194
type: LocalParameter
value: 0.0

188193
type: LocalParameter
value: 0.0

188190
type: LocalParameter
value: 1000.0

188189
type: LocalParameter
value: 0.0

189308
type: SpeciesReference
stoichiometry: 1.0
species: 178266

178266
type: Species
notes: FORMULA: C65H116O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: cardiolipin-tetratetradec-7-enoyl-n-C141

189320
type: SpeciesReference
stoichiometry: 1.0
species: 178739

189454
type: SpeciesReference
stoichiometry: 1.0
species: 179391

179391
type: Species
notes: FORMULA: C34H62O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerol-ditetradec-7-enoyl-n-C141

189332
type: SpeciesReference
stoichiometry: 1.0
species: 178745

189344
type: SpeciesReference
stoichiometry: 1.0
species: 179309

179309
type: Species
notes: FORMULA: C31H55O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate

181919
type: Reaction
kinetic law: 218168
reactant: 218156
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: S Methyl L methionine exchange

191298
type: LocalParameter
value: 0.0

191297
type: LocalParameter
value: 0.0

191295
type: LocalParameter
value: 1000.0

191294
type: LocalParameter
value: 0.0

218156
type: SpeciesReference
stoichiometry: 1.0
species: 179081

179081
type: Species
notes: FORMULA: C6H14NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: S-Methyl-L-methionine

180963
type: Reaction
product: 170019
reactant: 169995
kinetic law: 170043
reversible: false
reactant: 170007
fast: false
product: 170031
notes: GENE_ASSOCIATION: b0433 SUBSYSTEM: Murein Recycling
name: GlcNAc anhMurNAc transport in via proton symport periplasm

170019
type: SpeciesReference
stoichiometry: 1.0
species: 178095

169995
type: SpeciesReference
stoichiometry: 1.0
species: 178098

186327
type: LocalParameter
value: 0.0

186325
type: LocalParameter
value: 0.0

186323
type: LocalParameter
value: 1000.0

186321
type: LocalParameter
value: 0.0

170007
type: SpeciesReference
stoichiometry: 1.0
species: 178745

170031
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182541
type: Reaction
kinetic law: 239627
notes: GENE_ASSOCIATION: ( b4208 or b1801 ) SUBSYSTEM: Transport Inner Membrane
name: glycine transport in via proton symport periplasm
product: 239603
fast: false
reactant: 239578
reversible: false
product: 239615
reactant: 239590

193719
type: LocalParameter
value: 0.0

193717
type: LocalParameter
value: 0.0

193715
type: LocalParameter
value: 1000.0

193714
type: LocalParameter
value: 0.0

239603
type: SpeciesReference
stoichiometry: 1.0
species: 178679

239578
type: SpeciesReference
stoichiometry: 1.0
species: 178681

178681
type: Species
notes: FORMULA: C2H5NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Glycine

239615
type: SpeciesReference
stoichiometry: 1.0
species: 178743

239590
type: SpeciesReference
stoichiometry: 1.0
species: 178745

184477
type: Reaction
reversible: false
product: 293241
product: 293253
reactant: 293217
reactant: 293205
product: 293229
fast: false
kinetic law: 293265
name: ribonucleoside diphosphate reductase GDP
notes: GENE_ASSOCIATION: ( ( ( b2234 and b2235 ) and b2582 ) or ( ( b2234 and b2235 ) and b3781 ) ) SUBSYSTEM: Nucleotide Salvage Pathway

293241
type: SpeciesReference
stoichiometry: 1.0
species: 178737

293253
type: SpeciesReference
stoichiometry: 1.0
species: 179863

293217
type: SpeciesReference
stoichiometry: 1.0
species: 179865

293205
type: SpeciesReference
stoichiometry: 1.0
species: 178636

293229
type: SpeciesReference
stoichiometry: 1.0
species: 178370

178370
type: Species
notes: FORMULA: C10H12N5O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dGDP

198839
type: LocalParameter
value: 0.0

198838
type: LocalParameter
value: 0.0

198837
type: LocalParameter
value: 1000.0

198835
type: LocalParameter
value: 0.0

181205
type: Reaction
notes: GENE_ASSOCIATION: b2574 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
kinetic law: 179029
product: 178977
reversible: false
reactant: 178911
name: L aspartate oxidase
reactant: 178937
product: 179003
fast: false
product: 178963

187713
type: LocalParameter
value: 0.0

187712
type: LocalParameter
value: 0.0

187710
type: LocalParameter
value: 1000.0

187709
type: LocalParameter
value: 0.0

178977
type: SpeciesReference
stoichiometry: 1.0
species: 178791

178791
type: Species
notes: FORMULA: C4H3NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Iminoaspartate

178911
type: SpeciesReference
stoichiometry: 1.0
species: 178164

178937
type: SpeciesReference
stoichiometry: 1.0
species: 178575

179003
type: SpeciesReference
stoichiometry: 1.0
species: 179731

178963
type: SpeciesReference
stoichiometry: 1.0
species: 178743

184280
type: Reaction
kinetic law: 287768
product: 287756
reactant: 287744
notes: GENE_ASSOCIATION: b1262 SUBSYSTEM: Tyrosine Tryptophan and Phenylalanine Metabolism
fast: false
reversible: false
name: phosphoribosylanthranilate isomerase irreversible

198426
type: LocalParameter
value: 0.0

198425
type: LocalParameter
value: 0.0

198424
type: LocalParameter
value: 1000.0

198423
type: LocalParameter
value: 0.0

287756
type: SpeciesReference
stoichiometry: 1.0
species: 177460

177460
type: Species
notes: FORMULA: C12H13NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-Carboxyphenylamino-1-deoxy-D-ribulose-5-phosphate

287744
type: SpeciesReference
stoichiometry: 1.0
species: 179521

179521
type: Species
notes: FORMULA: C12H13NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-5-Phospho-D-ribosyl-anthranilate

181595
type: Reaction
name: 1 Deoxy D xylulose kinase
product: 209334
product: 209321
reactant: 209308
kinetic law: 209359
reactant: 209296
product: 209347
fast: false
reversible: false
notes: GENE_ASSOCIATION: b3564 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis

209334
type: SpeciesReference
stoichiometry: 1.0
species: 178483

178483
type: Species
notes: FORMULA: C5H9O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-deoxy-D-xylulose-5-phosphate

209321
type: SpeciesReference
stoichiometry: 1.0
species: 178016

209308
type: SpeciesReference
stoichiometry: 1.0
species: 178484

178484
type: Species
notes: FORMULA: C5H10O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-deoxy-D-xylulose

189227
type: LocalParameter
value: 0.0

189226
type: LocalParameter
value: 0.0

189224
type: LocalParameter
value: 1000.0

189223
type: LocalParameter
value: 0.0

209296
type: SpeciesReference
stoichiometry: 1.0
species: 178173

209347
type: SpeciesReference
stoichiometry: 1.0
species: 178743

177893
type: Species
notes: FORMULA: C14H17N2O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N1-5-Phospho-alpha-D-ribosyl-5-6-dimethylbenzimidazole

182607
type: Reaction
product: 241140
fast: false
kinetic law: 241152
product: 241116
name: Glycerophosphodiester phosphodiesterase Glycerophosphoinositol
product: 241128
notes: GENE_ASSOCIATION: b3449 SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 241104
reactant: 241092
reversible: false

241140
type: SpeciesReference
stoichiometry: 1.0
species: 178810

178810
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: myo-Inositol

193847
type: LocalParameter
value: 0.0

193846
type: LocalParameter
value: 0.0

193844
type: LocalParameter
value: 1000.0

193843
type: LocalParameter
value: 0.0

241116
type: SpeciesReference
stoichiometry: 1.0
species: 178690

241128
type: SpeciesReference
stoichiometry: 1.0
species: 178743

241104
type: SpeciesReference
stoichiometry: 1.0
species: 178737

241092
type: SpeciesReference
stoichiometry: 1.0
species: 178591

178591
type: Species
notes: FORMULA: C9H18O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: sn-Glycero-3-phospho-1-inositol

182087
type: Reaction
kinetic law: 220148
reactant: 220136
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Xanthosine 5 phosphate exchange

191735
type: LocalParameter
value: 0.0

191733
type: LocalParameter
value: 0.0

191732
type: LocalParameter
value: 1000.0

191731
type: LocalParameter
value: 0.0

220136
type: SpeciesReference
stoichiometry: 1.0
species: 180188

180188
type: Species
notes: FORMULA: C10H11N4O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Xanthosine-5-phosphate

178515
type: Species
notes: FORMULA: C6H11O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Fuculose-1-phosphate

178809
type: Species
notes: FORMULA: C8H7N
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Indole

182252
type: Reaction
kinetic law: 228808
product: 228796
reactant: 228784
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: formate transport via diffusion extracellular to periplasm

192293
type: LocalParameter
value: 0.0

192292
type: LocalParameter
value: 0.0

192290
type: LocalParameter
value: 1000.0

192289
type: LocalParameter
value: -1000.0

228796
type: SpeciesReference
stoichiometry: 1.0
species: 178558

178558
type: Species
notes: FORMULA: CH1O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Formate

228784
type: SpeciesReference
stoichiometry: 1.0
species: 178557

178557
type: Species
notes: FORMULA: CH1O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Formate

182129
type: Reaction
reversible: false
reactant: 222643
product: 222680
reactant: 222631
name: fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling
product: 222692
fast: false
product: 222716
product: 222704
notes: GENE_ASSOCIATION: ( b1701 or b1805 ) SUBSYSTEM: Cell Envelope Biosynthesis
kinetic law: 222728
reactant: 222655
reactant: 222668

222643
type: SpeciesReference
stoichiometry: 1.0
species: 178283

222680
type: SpeciesReference
stoichiometry: 1.0
species: 178085

222631
type: SpeciesReference
stoichiometry: 1.0
species: 178173

222692
type: SpeciesReference
stoichiometry: 1.0
species: 178369

178369
type: Species
notes: FORMULA: C33H54N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dodecanoyl-CoA-n-C120CoA

222716
type: SpeciesReference
stoichiometry: 1.0
species: 179501

222704
type: SpeciesReference
stoichiometry: 1.0
species: 178743

191875
type: LocalParameter
value: 0.0

191873
type: LocalParameter
value: 0.0

191872
type: LocalParameter
value: 1000.0

191871
type: LocalParameter
value: 0.0

222655
type: SpeciesReference
stoichiometry: 1.0
species: 178368

178368
type: Species
notes: FORMULA: C12H23O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Dodecanoate-n-C120

222668
type: SpeciesReference
stoichiometry: 1.0
species: 178745

181461
type: Reaction
reversible: false
product: 201376
fast: false
product: 201400
reactant: 201328
reactant: 201340
product: 201388
reactant: 201352
product: 201364
kinetic law: 201412
notes: GENE_ASSOCIATION: ( b0886 and b0887 ) SUBSYSTEM: Transport Inner Membrane
name: L cysteine export via ABC system cytoplasm to periplasm

201376
type: SpeciesReference
stoichiometry: 1.0
species: 178332

178332
type: Species
notes: FORMULA: C3H7NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Cysteine

201400
type: SpeciesReference
stoichiometry: 1.0
species: 179463

201328
type: SpeciesReference
stoichiometry: 1.0
species: 178173

201340
type: SpeciesReference
stoichiometry: 1.0
species: 178330

178330
type: Species
notes: FORMULA: C3H7NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Cysteine

201388
type: SpeciesReference
stoichiometry: 1.0
species: 178743

201352
type: SpeciesReference
stoichiometry: 1.0
species: 178737

201364
type: SpeciesReference
stoichiometry: 1.0
species: 178016

188632
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value: 0.0

188631
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value: 0.0

188630
type: LocalParameter
value: 1000.0

188629
type: LocalParameter
value: 0.0

179485
type: Species
notes: FORMULA: C3H6O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Propanal

181085
type: Reaction
kinetic law: 173813
product: 173801
reactant: 173789
notes: GENE_ASSOCIATION: b3223 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: true
name: N acetylmannosamine 6 phosphate epimerase

187376
type: LocalParameter
value: 0.0

187373
type: LocalParameter
value: 0.0

187371
type: LocalParameter
value: 1000.0

187370
type: LocalParameter
value: -1000.0

173801
type: SpeciesReference
stoichiometry: 1.0
species: 177957

173789
type: SpeciesReference
stoichiometry: 1.0
species: 177972

177972
type: Species
notes: FORMULA: C8H14NO9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-D-mannosamine-6-phosphate

183530
type: Reaction
kinetic law: 259594
product: 259582
product: 259570
reactant: 259558
notes: GENE_ASSOCIATION: b0334 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: false
name: 2 methylcitrate dehydratase

195792
type: LocalParameter
value: 0.0

195790
type: LocalParameter
value: 0.0

195788
type: LocalParameter
value: 1000.0

195786
type: LocalParameter
value: 0.0

259582
type: SpeciesReference
stoichiometry: 1.0
species: 178737

259570
type: SpeciesReference
stoichiometry: 1.0
species: 177535

177535
type: Species
notes: FORMULA: C7H5O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cis-2-Methylaconitate

259558
type: SpeciesReference
stoichiometry: 1.0
species: 177538

177538
type: Species
notes: FORMULA: C7H7O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Methylcitrate

179006
type: Species
notes: FORMULA: C5H11NO3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Methionine-Sulfoxide

177181
type: Species
notes: FORMULA: C31H56O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141

182553
type: Reaction
reactant: 239807
product: 239819
kinetic law: 239843
reversible: false
reactant: 239795
reactant: 239783
fast: false
product: 239831
notes: GENE_ASSOCIATION: b3052 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
name: D glycero D manno hepose 1 phosphate adenyltransferase

239807
type: SpeciesReference
stoichiometry: 1.0
species: 178743

239819
type: SpeciesReference
stoichiometry: 1.0
species: 178019

193743
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value: 0.0

193741
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value: 0.0

193739
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value: 1000.0

193738
type: LocalParameter
value: 0.0

239795
type: SpeciesReference
stoichiometry: 1.0
species: 178705

178705
type: Species
notes: FORMULA: C7H13O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Glycero-D-manno-heptose-1-phosphate

239783
type: SpeciesReference
stoichiometry: 1.0
species: 178173

239831
type: SpeciesReference
stoichiometry: 1.0
species: 179501

180300
type: Reaction
reversible: false
product: 156543
fast: false
reactant: 156507
notes: GENE_ASSOCIATION: b4213 SUBSYSTEM: Nucleotide Salvage Pathway
name: 2 3 cyclic nucleotide phosphodiesterase UMP periplasm
product: 156531
kinetic law: 156555
reactant: 156519

156543
type: SpeciesReference
stoichiometry: 1.0
species: 178745

156507
type: SpeciesReference
stoichiometry: 1.0
species: 177349

177349
type: Species
notes: FORMULA: C9H10N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-3-Cyclic-UMP

156531
type: SpeciesReference
stoichiometry: 1.0
species: 177834

184969
type: LocalParameter
value: 0.0

184968
type: LocalParameter
value: 0.0

184966
type: LocalParameter
value: 1000.0

184965
type: LocalParameter
value: 0.0

156519
type: SpeciesReference
stoichiometry: 1.0
species: 178739

182306
type: Reaction
kinetic law: 230822
product: 230810
reactant: 230798
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: glycero 3 phosphocholine transport via diffusion extracellular to periplasm

192473
type: LocalParameter
value: 0.0

192472
type: LocalParameter
value: 0.0

192470
type: LocalParameter
value: 1000.0

192469
type: LocalParameter
value: -1000.0

230810
type: SpeciesReference
stoichiometry: 1.0
species: 178584

178584
type: Species
notes: FORMULA: C8H20NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: sn-Glycero-3-phosphocholine

230798
type: SpeciesReference
stoichiometry: 1.0
species: 178583

178583
type: Species
notes: FORMULA: C8H20NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: sn-Glycero-3-phosphocholine

178241
type: Species
notes: FORMULA: C5H10N2O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Cys-Gly

178325
type: Species
notes: FORMULA: CNO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Cyanate

180983
type: Reaction
product: 170573
kinetic law: 170585
notes: GENE_ASSOCIATION: b3958 SUBSYSTEM: Arginine and Proline Metabolism
reactant: 170525
reactant: 170513
product: 170549
product: 170561
reversible: true
reactant: 170537
fast: false
name: N acetyl g glutamyl phosphate reductase

170573
type: SpeciesReference
stoichiometry: 1.0
species: 179173

186390
type: LocalParameter
value: 0.0

186388
type: LocalParameter
value: 0.0

186386
type: LocalParameter
value: 1000.0

186384
type: LocalParameter
value: -1000.0

170525
type: SpeciesReference
stoichiometry: 1.0
species: 179171

170513
type: SpeciesReference
stoichiometry: 1.0
species: 177945

177945
type: Species
notes: FORMULA: C7H10NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-L-glutamate-5-semialdehyde

170549
type: SpeciesReference
stoichiometry: 1.0
species: 177944

177944
type: Species
notes: FORMULA: C7H9NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Acetyl-L-glutamyl-5-phosphate

170561
type: SpeciesReference
stoichiometry: 1.0
species: 178743

170537
type: SpeciesReference
stoichiometry: 1.0
species: 179463

178456
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: protein-disulfide-isomerase-II-oxidized

178671
type: Species
notes: FORMULA: C5H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Glutamate-5-semialdehyde

181225
type: Reaction
product: 179985
product: 179923
reactant: 179911
fast: false
kinetic law: 180058
name: arsenate reductase
reactant: 179873
notes: GENE_ASSOCIATION: ( b3503 and b1064 ) SUBSYSTEM: Inorganic Ion Transport and Metabolism
reversible: false
product: 179973

179985
type: SpeciesReference
stoichiometry: 1.0
species: 178737

179923
type: SpeciesReference
stoichiometry: 1.0
species: 178158

178158
type: Species
notes: FORMULA: AsO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: arsenite

179911
type: SpeciesReference
stoichiometry: 2.0
species: 178720

187768
type: LocalParameter
value: 0.0

187767
type: LocalParameter
value: 0.0

187765
type: LocalParameter
value: 1000.0

187764
type: LocalParameter
value: 0.0

179873
type: SpeciesReference
stoichiometry: 1.0
species: 178163

178163
type: Species
notes: FORMULA: AsO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: arsenate

179973
type: SpeciesReference
stoichiometry: 1.0
species: 178717

178717
type: Species
notes: FORMULA: C20H30N6O12S2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Oxidized-glutathione

179245
type: Species
notes: FORMULA: C19H35N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Octanoyl-ACP-n-C80ACP

181263
type: Reaction
kinetic law: 182720
name: calcium Ca2 transport out via proton antiport periplasm
reactant: 182683
reversible: false
fast: false
product: 182695
reactant: 182671
notes: GENE_ASSOCIATION: b1216 SUBSYSTEM: Inorganic Ion Transport and Metabolism
product: 182707

187881
type: LocalParameter
value: 0.0

187880
type: LocalParameter
value: 0.0

187877
type: LocalParameter
value: 1000.0

187876
type: LocalParameter
value: 0.0

182683
type: SpeciesReference
stoichiometry: 1.0
species: 178745

182695
type: SpeciesReference
stoichiometry: 1.0
species: 178202

178202
type: Species
notes: FORMULA: Ca
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Calcium

182671
type: SpeciesReference
stoichiometry: 1.0
species: 178199

178199
type: Species
notes: FORMULA: Ca
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Calcium

182707
type: SpeciesReference
stoichiometry: 1.0
species: 178743

183332
type: Reaction
reactant: 255327
name: Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180
fast: false
kinetic law: 255364
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
product: 255352
reactant: 255315
reversible: false
product: 255339

255327
type: SpeciesReference
stoichiometry: 1.0
species: 179401

195377
type: LocalParameter
value: 0.0

195376
type: LocalParameter
value: 0.0

195374
type: LocalParameter
value: 1000.0

195373
type: LocalParameter
value: 0.0

255352
type: SpeciesReference
stoichiometry: 1.0
species: 178585

255315
type: SpeciesReference
stoichiometry: 1.0
species: 177413

177413
type: Species
notes: FORMULA: C23H48NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180

255339
type: SpeciesReference
stoichiometry: 1.0
species: 178116

182562
type: Reaction
fast: false
reactant: 240001
reactant: 240013
kinetic law: 240061
notes: GENE_ASSOCIATION: b0104 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
product: 240049
reversible: false
name: GMP reductase
product: 240025
product: 240037
reactant: 239988

240001
type: SpeciesReference
stoichiometry: 2.0
species: 178743

240013
type: SpeciesReference
stoichiometry: 1.0
species: 179173

193761
type: LocalParameter
value: 0.0

193759
type: LocalParameter
value: 0.0

193757
type: LocalParameter
value: 1000.0

193756
type: LocalParameter
value: 0.0

240049
type: SpeciesReference
stoichiometry: 1.0
species: 179177

240025
type: SpeciesReference
stoichiometry: 1.0
species: 178804

240037
type: SpeciesReference
stoichiometry: 1.0
species: 179171

239988
type: SpeciesReference
stoichiometry: 1.0
species: 178707

181305
type: Reaction
name: CDP Diacylglycerol pyrophostatase n C161
fast: false
kinetic law: 186212
notes: GENE_ASSOCIATION: b3918 SUBSYSTEM: Glycerophospholipid Metabolism
product: 186200
product: 186140
reversible: false
reactant: 186080
product: 186116
reactant: 186104

188018
type: LocalParameter
value: 0.0

188016
type: LocalParameter
value: 0.0

188015
type: LocalParameter
value: 1000.0

188012
type: LocalParameter
value: 0.0

186200
type: SpeciesReference
stoichiometry: 1.0
species: 179315

179315
type: Species
notes: FORMULA: C35H63O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate

186140
type: SpeciesReference
stoichiometry: 2.0
species: 178743

186080
type: SpeciesReference
stoichiometry: 1.0
species: 178227

178227
type: Species
notes: FORMULA: C44H75N3O15P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: CDP-1-2-dihexadec-9-enoylglycerol

186116
type: SpeciesReference
stoichiometry: 1.0
species: 178274

186104
type: SpeciesReference
stoichiometry: 1.0
species: 178737

177287
type: Species
notes: FORMULA: C15H29O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-dodecanoyl-sn-glycerol-3-phosphate

184498
type: Reaction
notes: GENE_ASSOCIATION: b1745 SUBSYSTEM: Arginine and Proline Metabolism
reversible: false
kinetic law: 294172
reactant: 294123
product: 294135
name: Succinylarginine dihydrolase
product: 294147
product: 294160
reactant: 294099
reactant: 294111
fast: false

198911
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value: 0.0

198910
type: LocalParameter
value: 0.0

198908
type: LocalParameter
value: 1000.0

198907
type: LocalParameter
value: 0.0

294123
type: SpeciesReference
stoichiometry: 1.0
species: 179727

179727
type: Species
notes: FORMULA: C10H17N4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N2-Succinyl-L-arginine

294135
type: SpeciesReference
stoichiometry: 1.0
species: 178278

294147
type: SpeciesReference
stoichiometry: 2.0
species: 179177

294160
type: SpeciesReference
stoichiometry: 1.0
species: 179745

179745
type: Species
notes: FORMULA: C9H15N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N2-Succinyl-L-ornithine

294099
type: SpeciesReference
stoichiometry: 2.0
species: 178737

294111
type: SpeciesReference
stoichiometry: 2.0
species: 178743

179906
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-SeCys

178187
type: Species
notes: FORMULA: C15H25N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: But-2-enoyl-acyl-carrier-protein

182628
type: Reaction
name: Glutathionylspermidine amidase
fast: false
reactant: 241526
notes: GENE_ASSOCIATION: b2988 SUBSYSTEM: Arginine and Proline Metabolism
reactant: 241538
reversible: false
product: 241562
product: 241550
kinetic law: 241574

241526
type: SpeciesReference
stoichiometry: 1.0
species: 178726

241538
type: SpeciesReference
stoichiometry: 1.0
species: 178737

241562
type: SpeciesReference
stoichiometry: 1.0
species: 179715

241550
type: SpeciesReference
stoichiometry: 1.0
species: 178720

193886
type: LocalParameter
value: 0.0

193884
type: LocalParameter
value: 0.0

193883
type: LocalParameter
value: 1000.0

193881
type: LocalParameter
value: 0.0

183685
type: Reaction
kinetic law: 263950
product: 263938
reactant: 263926
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: S methyl L methionine transport via diffusion extracellular to periplasm

196314
type: LocalParameter
value: 0.0

196312
type: LocalParameter
value: 0.0

196310
type: LocalParameter
value: 1000.0

196308
type: LocalParameter
value: -1000.0

263938
type: SpeciesReference
stoichiometry: 1.0
species: 179083

179083
type: Species
notes: FORMULA: C6H14NO2S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: S-Methyl-L-methionine

263926
type: SpeciesReference
stoichiometry: 1.0
species: 179081

177809
type: Species
notes: FORMULA: C21H37N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxodecanoyl-acyl-carrier-protein

181561
type: Reaction
reversible: false
kinetic law: 207529
name: Dimethyl sulfoxide reductase Demethylmenaquinol 8
reactant: 207469
reactant: 207481
fast: false
notes: GENE_ASSOCIATION: ( b0894 and b0895 and b0896 ) SUBSYSTEM: Oxidative Phosphorylation
product: 207493
product: 207505
product: 207517

189057
type: LocalParameter
value: 0.0

189056
type: LocalParameter
value: 0.0

189054
type: LocalParameter
value: 1000.0

189053
type: LocalParameter
value: 0.0

207469
type: SpeciesReference
stoichiometry: 1.0
species: 177502

177502
type: Species
notes: FORMULA: C50H72O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Demethylmenaquinol-8

207481
type: SpeciesReference
stoichiometry: 1.0
species: 178407

178407
type: Species
notes: FORMULA: C2H6OS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dimethyl-sulfoxide

207493
type: SpeciesReference
stoichiometry: 1.0
species: 177499

177499
type: Species
notes: FORMULA: C50H70O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Demethylmenaquinone-8

207505
type: SpeciesReference
stoichiometry: 1.0
species: 178404

207517
type: SpeciesReference
stoichiometry: 1.0
species: 178737

181635
type: Reaction
kinetic law: 211976
product: 211964
product: 211952
reactant: 211940
notes: GENE_ASSOCIATION: ( b3846 or b2341 ) SUBSYSTEM: Membrane Lipid Metabolism
fast: false
reversible: true
name: 3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA

189505
type: LocalParameter
value: 0.0

189503
type: LocalParameter
value: 0.0

189501
type: LocalParameter
value: 1000.0

189498
type: LocalParameter
value: -1000.0

211964
type: SpeciesReference
stoichiometry: 1.0
species: 178757

211952
type: SpeciesReference
stoichiometry: 1.0
species: 178737

211940
type: SpeciesReference
stoichiometry: 1.0
species: 177737

177737
type: Species
notes: FORMULA: C37H62N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-3-Hydroxyhexadecanoyl-CoA

179916
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-Val

181482
type: Reaction
notes: GENE_ASSOCIATION: b4042 SUBSYSTEM: Glycerophospholipid Metabolism
product: 202715
reactant: 202691
product: 202703
reversible: false
reactant: 202679
kinetic law: 202739
product: 202727
fast: false
name: diacylglycerol kinase n C161

202715
type: SpeciesReference
stoichiometry: 1.0
species: 178743

202691
type: SpeciesReference
stoichiometry: 1.0
species: 178173

202703
type: SpeciesReference
stoichiometry: 1.0
species: 178016

202679
type: SpeciesReference
stoichiometry: 1.0
species: 177189

177189
type: Species
notes: FORMULA: C35H64O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161

188719
type: LocalParameter
value: 0.0

188718
type: LocalParameter
value: 0.0

188717
type: LocalParameter
value: 1000.0

188716
type: LocalParameter
value: 0.0

202727
type: SpeciesReference
stoichiometry: 1.0
species: 179315

181500
type: Reaction
reactant: 203830
product: 203866
reactant: 203854
name: dATP amine hydrolysis spontaneous
fast: false
kinetic law: 203890
reversible: false
product: 203878
reactant: 203842
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Nucleotide Salvage Pathway

203830
type: SpeciesReference
stoichiometry: 1.0
species: 178347

203866
type: SpeciesReference
stoichiometry: 1.0
species: 178399

178399
type: Species
notes: FORMULA: C10H11N4O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dITP

203854
type: SpeciesReference
stoichiometry: 1.0
species: 178743

188796
type: LocalParameter
value: 0.0

188795
type: LocalParameter
value: 0.0

188794
type: LocalParameter
value: 1000.0

188793
type: LocalParameter
value: 0.0

203878
type: SpeciesReference
stoichiometry: 1.0
species: 179177

203842
type: SpeciesReference
stoichiometry: 1.0
species: 178737

181809
type: Reaction
kinetic law: 216401
reactant: 216389
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: D Galacturonate exchange

190877
type: LocalParameter
value: 0.0

190876
type: LocalParameter
value: 0.0

190873
type: LocalParameter
value: 1000.0

190872
type: LocalParameter
value: 0.0

216389
type: SpeciesReference
stoichiometry: 1.0
species: 178622

178622
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Galacturonate

182015
type: Reaction
kinetic law: 219712
reactant: 219700
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Thiosulfate exchange

191645
type: LocalParameter
value: 0.0

191643
type: LocalParameter
value: 0.0

191642
type: LocalParameter
value: 1000.0

191641
type: LocalParameter
value: 0.0

219700
type: SpeciesReference
stoichiometry: 1.0
species: 179928

177909
type: Species
notes: FORMULA: C15H25N4O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate

183551
type: Reaction
kinetic law: 260004
product: 259992
product: 259980
reactant: 259968
notes: GENE_ASSOCIATION: ( b0084 or b0635 or b3396 or b0149 ) SUBSYSTEM: Murein Biosynthesis
fast: false
reversible: false
name: murein crosslinking transpeptidase 1A A2pm D ala periplasm

195841
type: LocalParameter
value: 0.0

195839
type: LocalParameter
value: 0.0

195837
type: LocalParameter
value: 1000.0

195835
type: LocalParameter
value: 0.0

259992
type: SpeciesReference
stoichiometry: 1.0
species: 179143

179143
type: Species
notes: FORMULA: C114H172N22O59
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: three-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain

259980
type: SpeciesReference
stoichiometry: 2.0
species: 178050

259968
type: SpeciesReference
stoichiometry: 1.0
species: 179135

179135
type: Species
notes: FORMULA: C120H186N24O63
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: three-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain

179331
type: Species
notes: FORMULA: C8H8O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Phenylacetaldehyde

180230
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Xylulose

184161
type: Reaction
reversible: false
fast: false
name: Phospholipase A1 phosphatidate n C120 periplasm
product: 282532
reactant: 282496
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism
product: 282520
kinetic law: 282544
reactant: 282508

282532
type: SpeciesReference
stoichiometry: 1.0
species: 178368

282496
type: SpeciesReference
stoichiometry: 1.0
species: 178739

282520
type: SpeciesReference
stoichiometry: 1.0
species: 177469

177469
type: Species
notes: FORMULA: C15H30O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-dodecanoyl-sn-glycerol-3-phosphate

198078
type: LocalParameter
value: 0.0

198077
type: LocalParameter
value: 0.0

198075
type: LocalParameter
value: 1000.0

198074
type: LocalParameter
value: 0.0

282508
type: SpeciesReference
stoichiometry: 1.0
species: 179301

179301
type: Species
notes: FORMULA: C27H51O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-2-didodecanoyl-sn-glycerol-3-phosphate

181501
type: Reaction
product: 203926
product: 203914
name: 3 4 Dihydroxy 2 butanone 4 phosphate synthase
reversible: false
kinetic law: 203950
notes: GENE_ASSOCIATION: b3041 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
fast: false
reactant: 203902
product: 203938

203926
type: SpeciesReference
stoichiometry: 1.0
species: 178556

203914
type: SpeciesReference
stoichiometry: 1.0
species: 178348

178348
type: Species
notes: FORMULA: C4H7O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-4-dihydroxy-2-butanone-4-phosphate

188800
type: LocalParameter
value: 0.0

188799
type: LocalParameter
value: 0.0

188798
type: LocalParameter
value: 1000.0

188797
type: LocalParameter
value: 0.0

203902
type: SpeciesReference
stoichiometry: 1.0
species: 179639

179639
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Ribulose-5-phosphate

203938
type: SpeciesReference
stoichiometry: 1.0
species: 178743

180456
type: Reaction
kinetic law: 159430
product: 159418
product: 159406
reactant: 159394
notes: GENE_ASSOCIATION: ( b0954 or b0180 ) SUBSYSTEM: Cell Envelope Biosynthesis
fast: false
reversible: false
name: 3 hydroxyacyl acyl carrier protein dehydratase n C140

185304
type: LocalParameter
value: 0.0

185302
type: LocalParameter
value: 0.0

185301
type: LocalParameter
value: 1000.0

185300
type: LocalParameter
value: 0.0

159418
type: SpeciesReference
stoichiometry: 1.0
species: 179855

179855
type: Species
notes: FORMULA: C25H45N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Tetradec-2-enoyl-acyl-carrier-protein

159406
type: SpeciesReference
stoichiometry: 1.0
species: 178737

159394
type: SpeciesReference
stoichiometry: 1.0
species: 177759

177759
type: Species
notes: FORMULA: C25H47N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-3-Hydroxytetradecanoyl-acyl-carrier-protein

180321
type: Reaction
kinetic law: 156883
product: 156871
reactant: 156859
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport Inner Membrane
fast: false
reversible: false
name: 2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm

185004
type: LocalParameter
value: 0.0

185003
type: LocalParameter
value: 0.0

185001
type: LocalParameter
value: 1000.0

185000
type: LocalParameter
value: 0.0

156871
type: SpeciesReference
stoichiometry: 1.0
species: 177592

177592
type: Species
notes: FORMULA: C17H32O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-tetradec-7-enoyl-sn-glycerol-3-phosphate

156859
type: SpeciesReference
stoichiometry: 1.0
species: 177595

177595
type: Species
notes: FORMULA: C17H32O7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-tetradec-7-enoyl-sn-glycerol-3-phosphate

182327
type: Reaction
product: 231717
kinetic law: 231742
name: L glutamate 5 semialdehyde dehydratase spontaneous
reactant: 231693
product: 231705
product: 231730
reversible: false
fast: false
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Arginine and Proline Metabolism

231717
type: SpeciesReference
stoichiometry: 1.0
species: 178737

192611
type: LocalParameter
value: 0.0

192608
type: LocalParameter
value: 0.0

192605
type: LocalParameter
value: 1000.0

192602
type: LocalParameter
value: 0.0

231693
type: SpeciesReference
stoichiometry: 1.0
species: 178671

231705
type: SpeciesReference
stoichiometry: 1.0
species: 177314

177314
type: Species
notes: FORMULA: C5H6NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-Pyrroline-5-carboxylate

231730
type: SpeciesReference
stoichiometry: 1.0
species: 178743

180519
type: Reaction
product: 160744
product: 160732
notes: GENE_ASSOCIATION: b1093 SUBSYSTEM: Cell Envelope Biosynthesis
name: 3 oxoacyl acyl carrier protein reductase n C160
kinetic law: 160756
fast: false
reactant: 160720
reversible: true
reactant: 160696
reactant: 160708

160744
type: SpeciesReference
stoichiometry: 1.0
species: 179171

160732
type: SpeciesReference
stoichiometry: 1.0
species: 177770

185415
type: LocalParameter
value: 0.0

185414
type: LocalParameter
value: 0.0

185413
type: LocalParameter
value: 1000.0

185411
type: LocalParameter
value: -1000.0

160720
type: SpeciesReference
stoichiometry: 1.0
species: 179173

160696
type: SpeciesReference
stoichiometry: 1.0
species: 177822

177822
type: Species
notes: FORMULA: C27H49N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxohexadecanoyl-acyl-carrier-protein

160708
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178047
type: Species
notes: FORMULA: C3H7NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Alanine

181275
type: Reaction
kinetic law: 183369
reactant: 183309
fast: false
notes: GENE_ASSOCIATION: ( b3966 and ( b1252 and b3005 and b3006 ) ) SUBSYSTEM: Transport Outer Membrane
reversible: false
reactant: 183321
product: 183333
name: Cobinamide transport via ton system extermal
product: 183345

187920
type: LocalParameter
value: 0.0

187919
type: LocalParameter
value: 0.0

187916
type: LocalParameter
value: 1000.0

187915
type: LocalParameter
value: 0.0

183309
type: SpeciesReference
stoichiometry: 1.0
species: 178208

178208
type: Species
notes: FORMULA: C48H72CoN11O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Cobinamide

183321
type: SpeciesReference
stoichiometry: 1.0
species: 178745

183333
type: SpeciesReference
stoichiometry: 1.0
species: 178209

178209
type: Species
notes: FORMULA: C48H72CoN11O8
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Cobinamide

183345
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178778
type: Species
notes: FORMULA: C4H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Homoserine

183629
type: Reaction
kinetic law: 262406
product: 262394
reactant: 262381
notes: GENE_ASSOCIATION: b3816 SUBSYSTEM: Inorganic Ion Transport and Metabolism
fast: false
reversible: false
name: magnesium 2 transport in via diffusion

196114
type: LocalParameter
value: 0.0

196112
type: LocalParameter
value: 0.0

196110
type: LocalParameter
value: 1000.0

196108
type: LocalParameter
value: 0.0

262394
type: SpeciesReference
stoichiometry: 1.0
species: 179014

179014
type: Species
notes: FORMULA: Mg
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: magnesium

262381
type: SpeciesReference
stoichiometry: 1.0
species: 179018

181723
type: Reaction
kinetic law: 214622
reactant: 214610
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Citrate exchange

190322
type: LocalParameter
value: 0.0

190319
type: LocalParameter
value: 0.0

190316
type: LocalParameter
value: 1000.0

190315
type: LocalParameter
value: 0.0

214610
type: SpeciesReference
stoichiometry: 1.0
species: 178253

178253
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Citrate

179986
type: Species
notes: FORMULA: C17H25N3O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: UDP-N-acetyl-D-glucosamine

183353
type: Reaction
product: 255764
reversible: false
product: 255776
fast: false
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
name: Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180
kinetic law: 255788
reactant: 255752
reactant: 255740

255764
type: SpeciesReference
stoichiometry: 1.0
species: 178116

255776
type: SpeciesReference
stoichiometry: 1.0
species: 178588

195412
type: LocalParameter
value: 0.0

195411
type: LocalParameter
value: 0.0

195409
type: LocalParameter
value: 1000.0

195408
type: LocalParameter
value: 0.0

255752
type: SpeciesReference
stoichiometry: 1.0
species: 179401

255740
type: SpeciesReference
stoichiometry: 1.0
species: 177441

177441
type: Species
notes: FORMULA: C24H48O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C180

182583
type: Reaction
reversible: false
kinetic law: 240568
product: 240556
fast: false
notes: GENE_ASSOCIATION: b3449 SUBSYSTEM: Glycerophospholipid Metabolism
name: Glycerophosphodiester phosphodiesterase Glycerophosphocholine
reactant: 240508
product: 240532
product: 240544
reactant: 240520

193802
type: LocalParameter
value: 0.0

193801
type: LocalParameter
value: 0.0

193799
type: LocalParameter
value: 1000.0

193798
type: LocalParameter
value: 0.0

240556
type: SpeciesReference
stoichiometry: 1.0
species: 178743

240508
type: SpeciesReference
stoichiometry: 1.0
species: 178582

178582
type: Species
notes: FORMULA: C8H20NO6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: sn-Glycero-3-phosphocholine

240532
type: SpeciesReference
stoichiometry: 1.0
species: 178244

178244
type: Species
notes: FORMULA: C5H14NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Choline

240544
type: SpeciesReference
stoichiometry: 1.0
species: 178690

240520
type: SpeciesReference
stoichiometry: 1.0
species: 178737

178392
type: Species
notes: FORMULA: C10H11N4O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dIDP

178708
type: Species
notes: FORMULA: C10H12N5O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: GMP

180543
type: Reaction
product: 161336
kinetic law: 161360
reversible: false
reactant: 161312
name: 3 oxoacyl acyl carrier protein synthase n C120
reactant: 161300
notes: GENE_ASSOCIATION: ( b2323 or b1095 ) SUBSYSTEM: Cell Envelope Biosynthesis
product: 161348
reactant: 161288
fast: false
product: 161324

161336
type: SpeciesReference
stoichiometry: 1.0
species: 177902

185455
type: LocalParameter
value: 0.0

185454
type: LocalParameter
value: 0.0

185453
type: LocalParameter
value: 1000.0

185451
type: LocalParameter
value: 0.0

161312
type: SpeciesReference
stoichiometry: 1.0
species: 178906

161300
type: SpeciesReference
stoichiometry: 1.0
species: 178743

161348
type: SpeciesReference
stoichiometry: 1.0
species: 178278

161288
type: SpeciesReference
stoichiometry: 1.0
species: 178350

161324
type: SpeciesReference
stoichiometry: 1.0
species: 177807

177807
type: Species
notes: FORMULA: C23H41N2O9PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxododecanoyl-acyl-carrier-protein

183709
type: Reaction
reactant: 264555
reversible: false
reactant: 264543
product: 264591
kinetic law: 264603
notes: GENE_ASSOCIATION: b3624 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
product: 264567
fast: false
name: 3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis
product: 264579

264555
type: SpeciesReference
stoichiometry: 1.0
species: 179457

179457
type: Species
notes: FORMULA: C131H230N2O63P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA

264543
type: SpeciesReference
stoichiometry: 1.0
species: 178257

178257
type: Species
notes: FORMULA: C17H24N3O15P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: CMP-3-deoxy-D-manno-octulosonate

264591
type: SpeciesReference
stoichiometry: 1.0
species: 178838

178838
type: Species
notes: FORMULA: C139H241N2O70P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA

196399
type: LocalParameter
value: 0.0

196397
type: LocalParameter
value: 0.0

196395
type: LocalParameter
value: 1000.0

196392
type: LocalParameter
value: 0.0

264567
type: SpeciesReference
stoichiometry: 1.0
species: 178274

264579
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178760
type: Species
notes: FORMULA: C17H31N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hexanoyl-ACP-n-C60ACP

183953
type: Reaction
product: 272809
kinetic law: 272833
reactant: 272785
reactant: 272773
name: galactofuranosyltransferase LPS O16 antigen biosynthesis
reversible: false
fast: false
product: 272797
product: 272821
notes: GENE_ASSOCIATION: b2034 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling

272809
type: SpeciesReference
stoichiometry: 1.0
species: 178743

197228
type: LocalParameter
value: 0.0

197226
type: LocalParameter
value: 0.0

197225
type: LocalParameter
value: 1000.0

197223
type: LocalParameter
value: 0.0

272785
type: SpeciesReference
stoichiometry: 1.0
species: 180032

180032
type: Species
notes: FORMULA: C15H22N2O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-D-galacto-1-4-furanose

272773
type: SpeciesReference
stoichiometry: 1.0
species: 178631

178631
type: Species
notes: FORMULA: C77H125N1O22P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl-diphosphate

272797
type: SpeciesReference
stoichiometry: 1.0
species: 178644

178644
type: Species
notes: FORMULA: C83H135N1O27P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: galactofuranosyl-glucosyl-O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl-diphosphate

272821
type: SpeciesReference
stoichiometry: 1.0
species: 180014

181141
type: Reaction
product: 175712
product: 175700
reactant: 175676
fast: false
reactant: 175688
kinetic law: 175724
reversible: true
notes: GENE_ASSOCIATION: b2841 SUBSYSTEM: Transport Inner Membrane
name: L arabinose transport via proton symport periplasm

175712
type: SpeciesReference
stoichiometry: 1.0
species: 178743

175700
type: SpeciesReference
stoichiometry: 1.0
species: 178124

175676
type: SpeciesReference
stoichiometry: 1.0
species: 178127

178127
type: Species
notes: FORMULA: C5H10O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Arabinose

175688
type: SpeciesReference
stoichiometry: 1.0
species: 178745

187537
type: LocalParameter
value: 0.0

187536
type: LocalParameter
value: 0.0

187534
type: LocalParameter
value: 1000.0

187533
type: LocalParameter
value: -1000.0

181890
type: Reaction
kinetic law: 217708
reactant: 217696
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: L Lysine exchange

191194
type: LocalParameter
value: 0.0

191192
type: LocalParameter
value: 0.0

191191
type: LocalParameter
value: 1000.0

191189
type: LocalParameter
value: 0.0

217696
type: SpeciesReference
stoichiometry: 1.0
species: 178894

178894
type: Species
notes: FORMULA: C6H15N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Lysine

184458
type: Reaction
reactant: 292442
product: 292478
reactant: 292454
name: L ribulokinase L ribulose
fast: false
product: 292466
kinetic law: 292502
reversible: false
product: 292490
notes: GENE_ASSOCIATION: b0063 SUBSYSTEM: Alternate Carbon Metabolism

292442
type: SpeciesReference
stoichiometry: 1.0
species: 178173

292478
type: SpeciesReference
stoichiometry: 1.0
species: 178743

292454
type: SpeciesReference
stoichiometry: 1.0
species: 179615

292466
type: SpeciesReference
stoichiometry: 1.0
species: 178016

198774
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value: 0.0

198773
type: LocalParameter
value: 0.0

198772
type: LocalParameter
value: 1000.0

198770
type: LocalParameter
value: 0.0

292490
type: SpeciesReference
stoichiometry: 1.0
species: 179641

179641
type: Species
notes: FORMULA: C5H9O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Ribulose-5-phosphate

183789
type: Reaction
reactant: 267093
notes: GENE_ASSOCIATION: ( b0474 or b2518 ) SUBSYSTEM: Nucleotide Salvage Pathway
reversible: true
reactant: 267105
product: 267132
product: 267118
fast: false
kinetic law: 267145
name: nucleoside diphosphate kinase ATPdUDP

267093
type: SpeciesReference
stoichiometry: 1.0
species: 178173

267105
type: SpeciesReference
stoichiometry: 1.0
species: 178475

178475
type: Species
notes: FORMULA: C9H11N2O11P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dUDP

267132
type: SpeciesReference
stoichiometry: 1.0
species: 178482

178482
type: Species
notes: FORMULA: C9H11N2O14P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dUTP

267118
type: SpeciesReference
stoichiometry: 1.0
species: 178016

196677
type: LocalParameter
value: 0.0

196675
type: LocalParameter
value: 0.0

196673
type: LocalParameter
value: 1000.0

196672
type: LocalParameter
value: -1000.0

179359
type: Species
notes: FORMULA: C37H74N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylethanolamine-dihexadecanoyl-n-C160

183954
type: Reaction
reversible: false
kinetic law: 272905
notes: GENE_ASSOCIATION: b2032 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
product: 272869
product: 272881
product: 272893
fast: false
name: glucosyltransferase I LPS O16 antigen biosynthesis
reactant: 272845
reactant: 272857

197233
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value: 0.0

197232
type: LocalParameter
value: 0.0

197230
type: LocalParameter
value: 1000.0

197229
type: LocalParameter
value: 0.0

272869
type: SpeciesReference
stoichiometry: 1.0
species: 178631

272881
type: SpeciesReference
stoichiometry: 1.0
species: 178743

272893
type: SpeciesReference
stoichiometry: 1.0
species: 180014

272845
type: SpeciesReference
stoichiometry: 1.0
species: 178128

178128
type: Species
notes: FORMULA: C71H115N1O17P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: O-acetyl-rhamanosyl-N-acetylglucosamyl-undecaprenyl-diphosphate

272857
type: SpeciesReference
stoichiometry: 1.0
species: 180020

183071
type: Reaction
notes: GENE_ASSOCIATION: ( b3845 or b2342 ) SUBSYSTEM: Membrane Lipid Metabolism
reactant: 250686
kinetic law: 250723
product: 250711
name: 3 ketoacyl CoA thiolase
product: 250699
reactant: 250674
fast: false
reversible: false

250686
type: SpeciesReference
stoichiometry: 1.0
species: 178283

195028
type: LocalParameter
value: 0.0

195027
type: LocalParameter
value: 0.0

195025
type: LocalParameter
value: 1000.0

195024
type: LocalParameter
value: 0.0

250711
type: SpeciesReference
stoichiometry: 1.0
species: 179471

250699
type: SpeciesReference
stoichiometry: 1.0
species: 177941

250674
type: SpeciesReference
stoichiometry: 1.0
species: 177821

177821
type: Species
notes: FORMULA: C39H64N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxooctadecanoyl-CoA

180873
type: Reaction
kinetic law: 168172
product: 168160
product: 168148
reactant: 168136
notes: GENE_ASSOCIATION: b3806 SUBSYSTEM: Nucleotide Salvage Pathway
fast: false
reversible: false
name: adenylate cyclase

186101
type: LocalParameter
value: 0.0

186098
type: LocalParameter
value: 0.0

186095
type: LocalParameter
value: 1000.0

186092
type: LocalParameter
value: 0.0

168160
type: SpeciesReference
stoichiometry: 1.0
species: 179501

168148
type: SpeciesReference
stoichiometry: 1.0
species: 178203

168136
type: SpeciesReference
stoichiometry: 1.0
species: 178173

181442
type: Reaction
reversible: false
product: 199544
reactant: 199508
fast: false
reactant: 199471
product: 199520
notes: GENE_ASSOCIATION: b3469 SUBSYSTEM: Inorganic Ion Transport and Metabolism
name: Copper Cu2 ABC transporter periplasm
product: 199580
kinetic law: 199593
reactant: 199483
product: 199568

199544
type: SpeciesReference
stoichiometry: 1.0
species: 178317

199508
type: SpeciesReference
stoichiometry: 1.0
species: 178737

199471
type: SpeciesReference
stoichiometry: 1.0
species: 178173

199520
type: SpeciesReference
stoichiometry: 1.0
species: 178016

199580
type: SpeciesReference
stoichiometry: 1.0
species: 179463

188546
type: LocalParameter
value: 0.0

188544
type: LocalParameter
value: 0.0

188543
type: LocalParameter
value: 1000.0

188542
type: LocalParameter
value: 0.0

199483
type: SpeciesReference
stoichiometry: 1.0
species: 178315

178315
type: Species
notes: FORMULA: Cu
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Cu2

199568
type: SpeciesReference
stoichiometry: 1.0
species: 178743

179459
type: Species
notes: FORMULA: C9H7O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Phenylpyruvate

184756
type: Reaction
product: 304942
kinetic law: 304978
reactant: 304906
product: 304966
reversible: false
reactant: 304930
name: UDPglucose 6 dehydrogenase
product: 304954
fast: false
notes: GENE_ASSOCIATION: b2028 SUBSYSTEM: Cell Envelope Biosynthesis
reactant: 304918

304942
type: SpeciesReference
stoichiometry: 3.0
species: 178743

200395
type: LocalParameter
value: 0.0

200394
type: LocalParameter
value: 0.0

200391
type: LocalParameter
value: 1000.0

200390
type: LocalParameter
value: 0.0

304906
type: SpeciesReference
stoichiometry: 1.0
species: 178737

304966
type: SpeciesReference
stoichiometry: 1.0
species: 180034

180034
type: Species
notes: FORMULA: C15H19N2O18P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-D-glucuronate

304930
type: SpeciesReference
stoichiometry: 1.0
species: 180020

304954
type: SpeciesReference
stoichiometry: 2.0
species: 179169

304918
type: SpeciesReference
stoichiometry: 2.0
species: 179167

184182
type: Reaction
name: Phospholipase A1 phosphatidylglycerol n C120 periplasm
reversible: false
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism
kinetic law: 283486
product: 283474
reactant: 283437
product: 283461
fast: false
product: 283449
reactant: 283425

198148
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value: 0.0

198147
type: LocalParameter
value: 0.0

198145
type: LocalParameter
value: 1000.0

198144
type: LocalParameter
value: 0.0

283474
type: SpeciesReference
stoichiometry: 1.0
species: 178745

283437
type: SpeciesReference
stoichiometry: 1.0
species: 179383

179383
type: Species
notes: FORMULA: C30H58O10P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerol-didodecanoyl-n-C120

283461
type: SpeciesReference
stoichiometry: 1.0
species: 178368

283449
type: SpeciesReference
stoichiometry: 1.0
species: 177423

177423
type: Species
notes: FORMULA: C18H36O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C120

283425
type: SpeciesReference
stoichiometry: 1.0
species: 178739

182376
type: Reaction
notes: GENE_ASSOCIATION: ( b1817 and b1818 and b1819 and b2415 and b2416 ) SUBSYSTEM: Transport Inner Membrane
kinetic law: 233570
reactant: 233522
product: 233558
name: D glucosamine transport via PEPPyr PTS periplasm
fast: false
product: 233546
reversible: false
reactant: 233534

192980
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value: 0.0

192977
type: LocalParameter
value: 0.0

192974
type: LocalParameter
value: 1000.0

192971
type: LocalParameter
value: 0.0

233522
type: SpeciesReference
stoichiometry: 1.0
species: 178629

178629
type: Species
notes: FORMULA: C6H14NO5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Glucosamine

233558
type: SpeciesReference
stoichiometry: 1.0
species: 179589

233546
type: SpeciesReference
stoichiometry: 1.0
species: 178625

178625
type: Species
notes: FORMULA: C6H13NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Glucosamine-6-phosphate

233534
type: SpeciesReference
stoichiometry: 1.0
species: 179379

178082
type: Species
notes: FORMULA: C14H24N6O3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-Adenosylmethioninamine

178602
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: alpha-D-Galactose-1-phosphate

182297
type: Reaction
product: 230436
kinetic law: 230448
reversible: false
notes: GENE_ASSOCIATION: b4041 SUBSYSTEM: Glycerophospholipid Metabolism
product: 230424
fast: false
name: glycerol 3 phosphate acyltransferase C141
reactant: 230400
reactant: 230412

230436
type: SpeciesReference
stoichiometry: 1.0
species: 177902

192443
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value: 0.0

192442
type: LocalParameter
value: 0.0

192440
type: LocalParameter
value: 1000.0

192439
type: LocalParameter
value: 0.0

230424
type: SpeciesReference
stoichiometry: 1.0
species: 177317

230400
type: SpeciesReference
stoichiometry: 1.0
species: 178690

230412
type: SpeciesReference
stoichiometry: 1.0
species: 179797

178598
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Glucose-6-phosphate

180342
type: Reaction
kinetic law: 157135
product: 157123
reactant: 157111
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport Inner Membrane
fast: false
reversible: false
name: 2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm

185039
type: LocalParameter
value: 0.0

185038
type: LocalParameter
value: 0.0

185036
type: LocalParameter
value: 1000.0

185035
type: LocalParameter
value: 0.0

157123
type: SpeciesReference
stoichiometry: 1.0
species: 177400

177400
type: Species
notes: FORMULA: C19H38NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141

157111
type: SpeciesReference
stoichiometry: 1.0
species: 177402

177402
type: Species
notes: FORMULA: C19H38NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141

178966
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Mannose

182339
type: Reaction
kinetic law: 232215
product: 232203
reactant: 232191
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: D galactose 1 phosphate transport via diffusion extracellular to periplasm

192730
type: LocalParameter
value: 0.0

192727
type: LocalParameter
value: 0.0

192685
type: LocalParameter
value: 1000.0

192682
type: LocalParameter
value: -1000.0

232203
type: SpeciesReference
stoichiometry: 1.0
species: 178603

178603
type: Species
notes: FORMULA: C6H11O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: alpha-D-Galactose-1-phosphate

232191
type: SpeciesReference
stoichiometry: 1.0
species: 178602

181878
type: Reaction
kinetic law: 217514
reactant: 217502
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: K exchange

191150
type: LocalParameter
value: 0.0

191149
type: LocalParameter
value: 0.0

191147
type: LocalParameter
value: 1000.0

191146
type: LocalParameter
value: -1000.0

217502
type: SpeciesReference
stoichiometry: 1.0
species: 178822

178822
type: Species
notes: FORMULA: K
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: potassium

184757
type: Reaction
kinetic law: 305050
notes: GENE_ASSOCIATION: b2255 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
product: 305014
name: UDP glucuronate C 4 decarboxylase
reactant: 304990
product: 305038
fast: false
reactant: 305002
product: 305026
reversible: false

200403
type: LocalParameter
value: 0.0

200400
type: LocalParameter
value: 0.0

200399
type: LocalParameter
value: 1000.0

200396
type: LocalParameter
value: 0.0

305014
type: SpeciesReference
stoichiometry: 1.0
species: 178278

304990
type: SpeciesReference
stoichiometry: 1.0
species: 179167

305038
type: SpeciesReference
stoichiometry: 1.0
species: 180012

180012
type: Species
notes: FORMULA: C14H18N2O16P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-4-keto-pyranose

305002
type: SpeciesReference
stoichiometry: 1.0
species: 180034

305026
type: SpeciesReference
stoichiometry: 1.0
species: 179169

184622
type: Reaction
kinetic law: 299432
fast: false
name: thymidine transport in via proton symport periplasm
reversible: false
reactant: 299395
product: 299407
product: 299420
notes: GENE_ASSOCIATION: ( b2964 or b2393 ) SUBSYSTEM: Transport Inner Membrane
reactant: 299383

199625
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value: 0.0

199622
type: LocalParameter
value: 0.0

199619
type: LocalParameter
value: 1000.0

199616
type: LocalParameter
value: 0.0

299395
type: SpeciesReference
stoichiometry: 1.0
species: 179841

179841
type: Species
notes: FORMULA: C10H14N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Thymidine

299407
type: SpeciesReference
stoichiometry: 1.0
species: 178743

299420
type: SpeciesReference
stoichiometry: 1.0
species: 179837

179837
type: Species
notes: FORMULA: C10H14N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Thymidine

299383
type: SpeciesReference
stoichiometry: 1.0
species: 178745

181451
type: Reaction
kinetic law: 200401
reversible: false
reactant: 200293
name: Cyanate transport via proton symport periplasm
product: 200365
product: 200341
notes: GENE_ASSOCIATION: b0341 SUBSYSTEM: Transport Inner Membrane
reactant: 200317
fast: false

188592
type: LocalParameter
value: 0.0

188590
type: LocalParameter
value: 0.0

188589
type: LocalParameter
value: 1000.0

188588
type: LocalParameter
value: 0.0

200293
type: SpeciesReference
stoichiometry: 1.0
species: 178326

178326
type: Species
notes: FORMULA: CNO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Cyanate

200365
type: SpeciesReference
stoichiometry: 1.0
species: 178743

200341
type: SpeciesReference
stoichiometry: 1.0
species: 178324

200317
type: SpeciesReference
stoichiometry: 1.0
species: 178745

183368
type: Reaction
reactant: 256221
name: Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180
reactant: 256233
reversible: false
fast: false
kinetic law: 256281
product: 256269
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
product: 256245
product: 256257

256221
type: SpeciesReference
stoichiometry: 1.0
species: 177413

256233
type: SpeciesReference
stoichiometry: 1.0
species: 178737

195447
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value: 0.0

195446
type: LocalParameter
value: 0.0

195444
type: LocalParameter
value: 1000.0

195443
type: LocalParameter
value: 0.0

256269
type: SpeciesReference
stoichiometry: 1.0
species: 179251

179251
type: Species
notes: FORMULA: C18H35O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: octadecanoate-n-C180

256245
type: SpeciesReference
stoichiometry: 1.0
species: 178585

256257
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182595
type: Reaction
reactant: 240802
reactant: 240814
reversible: false
name: Glycerophosphodiester phosphodiesterase Glycerophosphoserine
product: 240838
kinetic law: 240862
product: 240850
product: 240826
notes: GENE_ASSOCIATION: b3449 SUBSYSTEM: Glycerophospholipid Metabolism
fast: false

240802
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stoichiometry: 1.0
species: 178594

178594
type: Species
notes: FORMULA: C6H13NO8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Glycerophosphoserine

240814
type: SpeciesReference
stoichiometry: 1.0
species: 178737

240838
type: SpeciesReference
stoichiometry: 1.0
species: 178743

193825
type: LocalParameter
value: 0.0

193824
type: LocalParameter
value: 0.0

193822
type: LocalParameter
value: 1000.0

193821
type: LocalParameter
value: 0.0

240850
type: SpeciesReference
stoichiometry: 1.0
species: 179671

240826
type: SpeciesReference
stoichiometry: 1.0
species: 178690

182205
type: Reaction
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism
kinetic law: 226645
reactant: 226604
product: 226618
reversible: false
reactant: 226591
product: 226631
fast: false
name: ferrichrome minus Fe secretion to periplasm

192133
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value: 0.0

192132
type: LocalParameter
value: 0.0

192131
type: LocalParameter
value: 1000.0

192129
type: LocalParameter
value: 0.0

226604
type: SpeciesReference
stoichiometry: 1.0
species: 178745

226618
type: SpeciesReference
stoichiometry: 1.0
species: 178540

226591
type: SpeciesReference
stoichiometry: 1.0
species: 178538

178538
type: Species
notes: FORMULA: C27H42N9O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Ferrichrome-minus-Fe-III

226631
type: SpeciesReference
stoichiometry: 1.0
species: 178743

181744
type: Reaction
kinetic law: 215129
reactant: 215117
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Deoxycytidine exchange

190490
type: LocalParameter
value: 0.0

190487
type: LocalParameter
value: 0.0

190484
type: LocalParameter
value: 1000.0

190483
type: LocalParameter
value: 0.0

215117
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stoichiometry: 1.0
species: 178362

178362
type: Species
notes: FORMULA: C9H13N3O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Deoxycytidine

181161
type: Reaction
product: 176349
reactant: 176313
product: 176337
reactant: 176325
kinetic law: 176385
product: 176373
reactant: 176301
product: 176361
notes: GENE_ASSOCIATION: ( ( b2310 and b2307 and b2306 and b2308 ) or ( b0863 and b0860 and b0861 and b0864 and b0862 ) ) SUBSYSTEM: Transport Inner Membrane
fast: false
reversible: false
name: L arginine transport via ABC system periplasm

176349
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stoichiometry: 1.0
species: 178140

178140
type: Species
notes: FORMULA: C6H15N4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Arginine

176313
type: SpeciesReference
stoichiometry: 1.0
species: 178173

176337
type: SpeciesReference
stoichiometry: 1.0
species: 178016

176325
type: SpeciesReference
stoichiometry: 1.0
species: 178737

187592
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value: 0.0

187591
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value: 0.0

187589
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value: 1000.0

187588
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value: 0.0

176373
type: SpeciesReference
stoichiometry: 1.0
species: 179463

176301
type: SpeciesReference
stoichiometry: 1.0
species: 178143

178143
type: Species
notes: FORMULA: C6H15N4O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Arginine

176361
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178459
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: fused-thioldisulfide-interchange-protein-reduced

181517
type: Reaction
kinetic law: 204854
product: 204842
reactant: 204830
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: dGMP transport via diffusion extracellular to periplasm

188867
type: LocalParameter
value: 0.0

188866
type: LocalParameter
value: 0.0

188865
type: LocalParameter
value: 1000.0

188864
type: LocalParameter
value: -1000.0

204842
type: SpeciesReference
stoichiometry: 1.0
species: 178373

178373
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: dGMP

204830
type: SpeciesReference
stoichiometry: 1.0
species: 178372

178372
type: Species
notes: FORMULA: C10H12N5O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: dGMP

179095
type: Species
notes: FORMULA: C6H14O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Mannitol

179179
type: Species
notes: FORMULA: H4N
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Ammonium

178592
type: Species
notes: FORMULA: C9H18O11P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: sn-Glycero-3-phospho-1-inositol

178872
type: Species
notes: FORMULA: C110H196N2O39P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: KDO-2-lipid-A

178254
type: Species
notes: FORMULA: C6H5O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Citrate

184631
type: Reaction
kinetic law: 299758
product: 299746
product: 299734
reactant: 299722
notes: GENE_ASSOCIATION: ( b2551 or b0870 ) SUBSYSTEM: Threonine and Lysine Metabolism
fast: false
reversible: false
name: Threonine aldolase

199685
type: LocalParameter
value: 0.0

199682
type: LocalParameter
value: 0.0

199679
type: LocalParameter
value: 1000.0

199676
type: LocalParameter
value: 0.0

299746
type: SpeciesReference
stoichiometry: 1.0
species: 178679

299734
type: SpeciesReference
stoichiometry: 1.0
species: 177935

299722
type: SpeciesReference
stoichiometry: 1.0
species: 179819

179819
type: Species
notes: FORMULA: C4H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Threonine

184479
type: Reaction
kinetic law: 293337
reactant: 293277
product: 293301
reversible: false
fast: false
product: 293313
name: ribonucleoside diphosphate reductase GDP glutaredoxin
notes: GENE_ASSOCIATION: ( ( b3610 and ( b2675 and b2676 ) ) or ( b1064 and ( b2675 and b2676 ) ) or ( b1654 and ( b2675 and b2676 ) ) or ( b0849 and ( b2675 and b2676 ) ) ) SUBSYSTEM: Nucleotide Salvage Pathway
product: 293325
reactant: 293289

198844
type: LocalParameter
value: 0.0

198843
type: LocalParameter
value: 0.0

198842
type: LocalParameter
value: 1000.0

198840
type: LocalParameter
value: 0.0

293277
type: SpeciesReference
stoichiometry: 1.0
species: 178636

293301
type: SpeciesReference
stoichiometry: 1.0
species: 178370

293313
type: SpeciesReference
stoichiometry: 1.0
species: 178712

178712
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: glutaredoxin-oxidized

293325
type: SpeciesReference
stoichiometry: 1.0
species: 178737

293289
type: SpeciesReference
stoichiometry: 1.0
species: 178713

178713
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: glutaredoxin-reduced

179279
type: Species
notes: FORMULA: C5H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Oxopent-4-enoate

182388
type: Reaction
reactant: 234030
name: GDP diphosphokinase
kinetic law: 234090
reversible: false
fast: false
product: 234078
notes: GENE_ASSOCIATION: ( b2784 or b3650 ) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
product: 234066
product: 234054
reactant: 234042

234030
type: SpeciesReference
stoichiometry: 1.0
species: 178173

193058
type: LocalParameter
value: 0.0

193055
type: LocalParameter
value: 0.0

193052
type: LocalParameter
value: 1000.0

193049
type: LocalParameter
value: 0.0

234078
type: SpeciesReference
stoichiometry: 1.0
species: 179497

179497
type: Species
notes: FORMULA: C10H11N5O17P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Guanosine-3-5-bis-diphosphate

234066
type: SpeciesReference
stoichiometry: 1.0
species: 178743

234054
type: SpeciesReference
stoichiometry: 1.0
species: 178085

234042
type: SpeciesReference
stoichiometry: 1.0
species: 178636

181039
type: Reaction
kinetic law: 172424
reversible: false
product: 172388
name: aldehyde dehydrogenase propanal NADP
reactant: 172352
reactant: 172376
reactant: 172364
fast: false
product: 172400
notes: GENE_ASSOCIATION: b3588 SUBSYSTEM: Alternate Carbon Metabolism
product: 172412

186586
type: LocalParameter
value: 0.0

186584
type: LocalParameter
value: 0.0

186582
type: LocalParameter
value: 1000.0

186580
type: LocalParameter
value: 0.0

172388
type: SpeciesReference
stoichiometry: 2.0
species: 178743

172352
type: SpeciesReference
stoichiometry: 1.0
species: 178737

172376
type: SpeciesReference
stoichiometry: 1.0
species: 179485

172364
type: SpeciesReference
stoichiometry: 1.0
species: 179171

172400
type: SpeciesReference
stoichiometry: 1.0
species: 179173

172412
type: SpeciesReference
stoichiometry: 1.0
species: 179479

179479
type: Species
notes: FORMULA: C3H5O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Propionate-n-C30

181597
type: Reaction
kinetic law: 209455
product: 209443
reactant: 209431
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: D lactate transport via diffusion extracellular to periplasm

189237
type: LocalParameter
value: 0.0

189236
type: LocalParameter
value: 0.0

189234
type: LocalParameter
value: 1000.0

189233
type: LocalParameter
value: -1000.0

209443
type: SpeciesReference
stoichiometry: 1.0
species: 178844

178844
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Lactate

209431
type: SpeciesReference
stoichiometry: 1.0
species: 178842

178842
type: Species
notes: FORMULA: C3H5O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Lactate

177981
type: Species
notes: FORMULA: C11H18NO9
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: N-Acetylneuraminate

179631
type: Species
notes: FORMULA: C6H12O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Rhamnulose

179932
type: Species
notes: FORMULA: C14H27O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tetradecanoate-n-C140

180600
type: Reaction
kinetic law: 162746
product: 162733
reactant: 162721
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm

185550
type: LocalParameter
value: 0.0

185549
type: LocalParameter
value: 0.0

185548
type: LocalParameter
value: 1000.0

185546
type: LocalParameter
value: -1000.0

162733
type: SpeciesReference
stoichiometry: 1.0
species: 177906

177906
type: Species
notes: FORMULA: C18H30N5O9
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine

162721
type: SpeciesReference
stoichiometry: 1.0
species: 177905

177905
type: Species
notes: FORMULA: C18H30N5O9
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine

183377
type: Reaction
reactant: 256451
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
fast: false
kinetic law: 256499
reversible: false
product: 256463
product: 256487
reactant: 256439
product: 256475
name: Lysophospholipase L2 2 acylglycerophosphoglycerol n C140

256451
type: SpeciesReference
stoichiometry: 1.0
species: 178737

195462
type: LocalParameter
value: 0.0

195461
type: LocalParameter
value: 0.0

195459
type: LocalParameter
value: 1000.0

195458
type: LocalParameter
value: 0.0

256463
type: SpeciesReference
stoichiometry: 1.0
species: 178588

256487
type: SpeciesReference
stoichiometry: 1.0
species: 179932

256439
type: SpeciesReference
stoichiometry: 1.0
species: 177425

177425
type: Species
notes: FORMULA: C20H40O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoglycerol-n-C140

256475
type: SpeciesReference
stoichiometry: 1.0
species: 178743

183092
type: Reaction
fast: false
reversible: false
product: 251182
kinetic law: 251195
name: potassium transport out via proton antiport periplasm
reactant: 251157
notes: GENE_ASSOCIATION: ( b3350 or b0047 or b1216 or b0842 ) SUBSYSTEM: Inorganic Ion Transport and Metabolism
product: 251169
reactant: 251145

251182
type: SpeciesReference
stoichiometry: 1.0
species: 178823

195063
type: LocalParameter
value: 0.0

195062
type: LocalParameter
value: 0.0

195060
type: LocalParameter
value: 1000.0

195059
type: LocalParameter
value: 0.0

251157
type: SpeciesReference
stoichiometry: 1.0
species: 178821

251169
type: SpeciesReference
stoichiometry: 1.0
species: 178743

251145
type: SpeciesReference
stoichiometry: 1.0
species: 178745

177272
type: Species
notes: FORMULA: C22H44O9P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 1-Acyl-sn-glycero-3-phosphoglycerol-n-C160

184777
type: Reaction
name: UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase
product: 305881
reactant: 305857
fast: false
reactant: 305845
reversible: false
kinetic law: 305893
product: 305869
notes: GENE_ASSOCIATION: b1192 SUBSYSTEM: Murein Recycling

305881
type: SpeciesReference
stoichiometry: 1.0
species: 180040

180040
type: Species
notes: FORMULA: C35H51N7O26P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate

305857
type: SpeciesReference
stoichiometry: 1.0
species: 180044

180044
type: Species
notes: FORMULA: C38H56N8O27P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate-D-alanine

305845
type: SpeciesReference
stoichiometry: 1.0
species: 178737

200493
type: LocalParameter
value: 0.0

200492
type: LocalParameter
value: 0.0

200489
type: LocalParameter
value: 1000.0

200488
type: LocalParameter
value: 0.0

305869
type: SpeciesReference
stoichiometry: 1.0
species: 178047

184488
type: Reaction
fast: false
notes: GENE_ASSOCIATION: ( ( b0684 and b4238 ) or ( b2895 and b4238 ) or ( b2895 and b3924 and b4238 and b4237 ) or ( b0684 and b3924 and b4238 and b4237 ) ) SUBSYSTEM: Nucleotide Salvage Pathway
name: ribonucleoside triphosphate reductase GTP flavodoxin
product: 293761
reactant: 293725
product: 293737
product: 293749
kinetic law: 293773
reversible: false
reactant: 293713

293761
type: SpeciesReference
stoichiometry: 1.0
species: 178737

293725
type: SpeciesReference
stoichiometry: 1.0
species: 178723

293737
type: SpeciesReference
stoichiometry: 1.0
species: 178377

178377
type: Species
notes: FORMULA: C10H12N5O13P3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dGTP

293749
type: SpeciesReference
stoichiometry: 1.0
species: 178551

178551
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: flavodoxin-oxidized

198874
type: LocalParameter
value: 0.0

198873
type: LocalParameter
value: 0.0

198872
type: LocalParameter
value: 1000.0

198870
type: LocalParameter
value: 0.0

293713
type: SpeciesReference
stoichiometry: 1.0
species: 178552

178552
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: flavodoxin-reduced

182397
type: Reaction
fast: false
product: 234465
notes: GENE_ASSOCIATION: b1298 SUBSYSTEM: Alternate Carbon Metabolism
reactant: 234428
reversible: false
reactant: 234440
product: 234453
kinetic law: 234477
name: gamma glutamyl gamma aminobutyric acid hydrolase

234465
type: SpeciesReference
stoichiometry: 1.0
species: 178673

234428
type: SpeciesReference
stoichiometry: 1.0
species: 178645

178645
type: Species
notes: FORMULA: C9H15O5N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: gamma-glutamyl-gamma-aminobutyric-acid

234440
type: SpeciesReference
stoichiometry: 1.0
species: 178737

234453
type: SpeciesReference
stoichiometry: 1.0
species: 177836

177836
type: Species
notes: FORMULA: C4H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Aminobutanoate

193118
type: LocalParameter
value: 0.0

193115
type: LocalParameter
value: 0.0

193112
type: LocalParameter
value: 1000.0

193109
type: LocalParameter
value: 0.0

178463
type: Species
notes: FORMULA: C10H17N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dethiobiotin

183978
type: Reaction
reversible: false
product: 273741
notes: GENE_ASSOCIATION: b0073 SUBSYSTEM: Valine Leucine and Isoleucine Metabolism
reactant: 273705
reactant: 273717
fast: false
product: 273729
name: 2 Oxo 4 methyl 3 carboxypentanoate decarboxylation
kinetic law: 273753

273741
type: SpeciesReference
stoichiometry: 1.0
species: 178278

273705
type: SpeciesReference
stoichiometry: 1.0
species: 177625

177625
type: Species
notes: FORMULA: C7H8O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Carboxy-4-methyl-2-oxopentanoate

273717
type: SpeciesReference
stoichiometry: 1.0
species: 178743

273729
type: SpeciesReference
stoichiometry: 1.0
species: 177860

177860
type: Species
notes: FORMULA: C6H9O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 4-Methyl-2-oxopentanoate

197321
type: LocalParameter
value: 0.0

197320
type: LocalParameter
value: 0.0

197318
type: LocalParameter
value: 1000.0

197317
type: LocalParameter
value: 0.0

182262
type: Reaction
kinetic law: 229205
reversible: false
reactant: 229157
product: 229193
fast: false
notes: GENE_ASSOCIATION: b3374 SUBSYSTEM: Alternate Carbon Metabolism
product: 229181
name: Fructoselysine Kinase
product: 229169
reactant: 229145

192328
type: LocalParameter
value: 0.0

192327
type: LocalParameter
value: 0.0

192325
type: LocalParameter
value: 1000.0

192324
type: LocalParameter
value: 0.0

229157
type: SpeciesReference
stoichiometry: 1.0
species: 178565

178565
type: Species
notes: FORMULA: C12H25N2O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: fructoselysine

229193
type: SpeciesReference
stoichiometry: 1.0
species: 178743

229181
type: SpeciesReference
stoichiometry: 1.0
species: 178568

178568
type: Species
notes: FORMULA: C12H24N2O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: fructoselysine-Phosphate

229169
type: SpeciesReference
stoichiometry: 1.0
species: 178016

229145
type: SpeciesReference
stoichiometry: 1.0
species: 178173

179183
type: Species
notes: FORMULA: Ni
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: nickel

184709
type: Reaction
kinetic law: 303006
product: 302994
reactant: 302982
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: tyramine transport via diffusion extracellular to periplasm

200153
type: LocalParameter
value: 0.0

200150
type: LocalParameter
value: 0.0

200147
type: LocalParameter
value: 1000.0

200146
type: LocalParameter
value: -1000.0

302994
type: SpeciesReference
stoichiometry: 1.0
species: 179952

179952
type: Species
notes: FORMULA: C8H12NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Tyramine

302982
type: SpeciesReference
stoichiometry: 1.0
species: 179950

179950
type: Species
notes: FORMULA: C8H12NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Tyramine

184643
type: Reaction
product: 300264
reversible: true
reactant: 300240
reactant: 300228
kinetic law: 300276
name: L threonine reversible transport via proton symport periplasm
product: 300252
notes: GENE_ASSOCIATION: b3116 SUBSYSTEM: Transport Inner Membrane
fast: false

300264
type: SpeciesReference
stoichiometry: 1.0
species: 179819

300240
type: SpeciesReference
stoichiometry: 1.0
species: 179823

179823
type: Species
notes: FORMULA: C4H9NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Threonine

300228
type: SpeciesReference
stoichiometry: 1.0
species: 178745

199765
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value: 0.0

199762
type: LocalParameter
value: 0.0

199759
type: LocalParameter
value: 1000.0

199756
type: LocalParameter
value: -1000.0

300252
type: SpeciesReference
stoichiometry: 1.0
species: 178743

181537
type: Reaction
kinetic law: 206093
reversible: false
product: 206081
name: dihydroorotic acid menaquinone 8
reactant: 206045
product: 206069
notes: GENE_ASSOCIATION: b0945 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
reactant: 206057
fast: false

188954
type: LocalParameter
value: 0.0

188953
type: LocalParameter
value: 0.0

188952
type: LocalParameter
value: 1000.0

188951
type: LocalParameter
value: 0.0

206081
type: SpeciesReference
stoichiometry: 1.0
species: 179289

179289
type: Species
notes: FORMULA: C5H3N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Orotate

206045
type: SpeciesReference
stoichiometry: 1.0
species: 178387

178387
type: Species
notes: FORMULA: C5H5N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-Dihydroorotate

206069
type: SpeciesReference
stoichiometry: 1.0
species: 179103

206057
type: SpeciesReference
stoichiometry: 1.0
species: 179105

181472
type: Reaction
name: cytidylate kinase dCMP
reactant: 202026
reactant: 202014
kinetic law: 202062
notes: GENE_ASSOCIATION: b0910 SUBSYSTEM: Nucleotide Salvage Pathway
reversible: true
product: 202050
fast: false
product: 202038

202026
type: SpeciesReference
stoichiometry: 1.0
species: 178357

178357
type: Species
notes: FORMULA: C9H12N3O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dCMP

202014
type: SpeciesReference
stoichiometry: 1.0
species: 178173

188676
type: LocalParameter
value: 0.0

188675
type: LocalParameter
value: 0.0

188674
type: LocalParameter
value: 1000.0

188673
type: LocalParameter
value: -1000.0

202050
type: SpeciesReference
stoichiometry: 1.0
species: 178356

178356
type: Species
notes: FORMULA: C9H12N3O10P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dCDP

202038
type: SpeciesReference
stoichiometry: 1.0
species: 178016

183844
type: Reaction
kinetic law: 268921
product: 268909
reactant: 268897
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b2215 or b1377 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: nitrate transport via diffusion extracellular to periplasm

196860
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value: 0.0

196857
type: LocalParameter
value: 0.0

196855
type: LocalParameter
value: 1000.0

196854
type: LocalParameter
value: -1000.0

268909
type: SpeciesReference
stoichiometry: 1.0
species: 179207

179207
type: Species
notes: FORMULA: NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Nitrate

268897
type: SpeciesReference
stoichiometry: 1.0
species: 179205

179205
type: Species
notes: FORMULA: NO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Nitrate

183389
type: Reaction
reactant: 256740
reactant: 256728
name: Lysophospholipase L2 2 acylglycerophosphoglycerol n C180
notes: GENE_ASSOCIATION: b3825 SUBSYSTEM: Glycerophospholipid Metabolism
product: 256776
reversible: false
kinetic law: 256788
fast: false
product: 256764
product: 256752

256740
type: SpeciesReference
stoichiometry: 1.0
species: 178737

256728
type: SpeciesReference
stoichiometry: 1.0
species: 177441

256776
type: SpeciesReference
stoichiometry: 1.0
species: 179251

195482
type: LocalParameter
value: 0.0

195481
type: LocalParameter
value: 0.0

195479
type: LocalParameter
value: 1000.0

195478
type: LocalParameter
value: 0.0

256764
type: SpeciesReference
stoichiometry: 1.0
species: 178743

256752
type: SpeciesReference
stoichiometry: 1.0
species: 178588

177394
type: Species
notes: FORMULA: C17H36NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120

181538
type: Reaction
reactant: 206105
fast: false
notes: GENE_ASSOCIATION: b1062 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
product: 206141
kinetic law: 206153
name: dihydroorotase
product: 206129
reversible: true
reactant: 206117

206105
type: SpeciesReference
stoichiometry: 1.0
species: 178387

206141
type: SpeciesReference
stoichiometry: 1.0
species: 178743

188958
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value: 0.0

188957
type: LocalParameter
value: 0.0

188956
type: LocalParameter
value: 1000.0

188955
type: LocalParameter
value: -1000.0

206129
type: SpeciesReference
stoichiometry: 1.0
species: 178205

178205
type: Species
notes: FORMULA: C5H6N2O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: N-Carbamoyl-L-aspartate

206117
type: SpeciesReference
stoichiometry: 1.0
species: 178737

178934
type: Species
notes: FORMULA: C36H62O31
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Maltohexaose

181059
type: Reaction
kinetic law: 173029
product: 173017
reactant: 173005
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Allose transport via diffusion extracellular to periplasm

186656
type: LocalParameter
value: 0.0

186654
type: LocalParameter
value: 0.0

186652
type: LocalParameter
value: 1000.0

186650
type: LocalParameter
value: -1000.0

173017
type: SpeciesReference
stoichiometry: 1.0
species: 178068

178068
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: D-Allose

173005
type: SpeciesReference
stoichiometry: 1.0
species: 178067

178067
type: Species
notes: FORMULA: C6H12O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: D-Allose

178634
type: Species
notes: FORMULA: C7H15NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: gamma-butyrobetaine

177816
type: Species
notes: FORMULA: C29H44N7O18P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Oxooctanoyl-CoA

178366
type: Species
notes: FORMULA: C12H23O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Dodecanoate-n-C120

178032
type: Species
notes: FORMULA: C14H20N6O5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-Adenosyl-L-homocysteine

184820
type: Reaction
kinetic law: 307653
product: 307641
reactant: 307629
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: L valine transport via diffusion extracellular to periplasm

200697
type: LocalParameter
value: 0.0

200694
type: LocalParameter
value: 0.0

200693
type: LocalParameter
value: 1000.0

200690
type: LocalParameter
value: -1000.0

307641
type: SpeciesReference
stoichiometry: 1.0
species: 180167

307629
type: SpeciesReference
stoichiometry: 1.0
species: 180164

180164
type: Species
notes: FORMULA: C5H11NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Valine

184652
type: Reaction
kinetic law: 300694
product: 300670
notes: GENE_ASSOCIATION: ( b2935 or b2465 ) SUBSYSTEM: Pentose Phosphate Pathway
product: 300682
fast: false
reversible: true
name: transketolase
reactant: 300658
reactant: 300646

199825
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value: 0.0

199822
type: LocalParameter
value: 0.0

199819
type: LocalParameter
value: 1000.0

199816
type: LocalParameter
value: -1000.0

300670
type: SpeciesReference
stoichiometry: 1.0
species: 178581

300682
type: SpeciesReference
stoichiometry: 1.0
species: 179643

300658
type: SpeciesReference
stoichiometry: 1.0
species: 180206

300646
type: SpeciesReference
stoichiometry: 1.0
species: 179605

180621
type: Reaction
kinetic law: 163180
reactant: 163107
reactant: 163119
fast: false
product: 163143
reversible: false
reactant: 163131
name: acyl acyl carrier protein synthetase n C141
product: 163155
product: 163167
notes: GENE_ASSOCIATION: ( b2836 and b1094 ) SUBSYSTEM: Cell Envelope Biosynthesis

185585
type: LocalParameter
value: 0.0

185584
type: LocalParameter
value: 0.0

185582
type: LocalParameter
value: 1000.0

185581
type: LocalParameter
value: 0.0

163107
type: SpeciesReference
stoichiometry: 1.0
species: 177902

163119
type: SpeciesReference
stoichiometry: 1.0
species: 178173

163143
type: SpeciesReference
stoichiometry: 1.0
species: 178085

163131
type: SpeciesReference
stoichiometry: 1.0
species: 179938

163155
type: SpeciesReference
stoichiometry: 1.0
species: 179501

163167
type: SpeciesReference
stoichiometry: 1.0
species: 179797

183687
type: Reaction
kinetic law: 263986
product: 263974
reactant: 263962
notes: GENE_ASSOCIATION: b2917 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: false
name: Methylmalonyl CoA mutase

196321
type: LocalParameter
value: 0.0

196319
type: LocalParameter
value: 0.0

196317
type: LocalParameter
value: 1000.0

196315
type: LocalParameter
value: 0.0

263974
type: SpeciesReference
stoichiometry: 1.0
species: 179030

263962
type: SpeciesReference
stoichiometry: 1.0
species: 179737

179737
type: Species
notes: FORMULA: C25H35N7O19P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Succinyl-CoA

183398
type: Reaction
product: 256980
product: 256968
name: lysine decarboxylase
reactant: 256956
fast: false
reversible: false
kinetic law: 256992
notes: GENE_ASSOCIATION: ( b0186 or b4131 ) SUBSYSTEM: Threonine and Lysine Metabolism
reactant: 256944

256980
type: SpeciesReference
stoichiometry: 1.0
species: 178278

256968
type: SpeciesReference
stoichiometry: 1.0
species: 177233

177233
type: Species
notes: FORMULA: C5H16N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-5-Diaminopentane

256956
type: SpeciesReference
stoichiometry: 1.0
species: 178892

178892
type: Species
notes: FORMULA: C6H15N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Lysine

195497
type: LocalParameter
value: 0.0

195496
type: LocalParameter
value: 0.0

195494
type: LocalParameter
value: 1000.0

195493
type: LocalParameter
value: 0.0

256944
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178013
type: Species
notes: FORMULA: C72H100CoN18O17P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Adenosylcobalamin

183619
type: Reaction
reversible: false
reactant: 262081
notes: GENE_ASSOCIATION: b2114 SUBSYSTEM: tRNA Charging
kinetic law: 262141
reactant: 262093
fast: false
product: 262129
product: 262117
name: Methionyl tRNA synthetase
product: 262105
reactant: 262069

262081
type: SpeciesReference
stoichiometry: 1.0
species: 178992

196079
type: LocalParameter
value: 0.0

196077
type: LocalParameter
value: 0.0

196075
type: LocalParameter
value: 1000.0

196073
type: LocalParameter
value: 0.0

262093
type: SpeciesReference
stoichiometry: 1.0
species: 179900

179900
type: Species
notes: FORMULA: R
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: tRNA-Met

262129
type: SpeciesReference
stoichiometry: 1.0
species: 179501

262117
type: SpeciesReference
stoichiometry: 1.0
species: 179012

262105
type: SpeciesReference
stoichiometry: 1.0
species: 178085

262069
type: SpeciesReference
stoichiometry: 1.0
species: 178173

181563
type: Reaction
kinetic law: 207637
product: 207625
reactant: 207613
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Dimethyl sulfoxide transport via diffusion extracellular to periplasm

189067
type: LocalParameter
value: 0.0

189066
type: LocalParameter
value: 0.0

189064
type: LocalParameter
value: 1000.0

189063
type: LocalParameter
value: -1000.0

207625
type: SpeciesReference
stoichiometry: 1.0
species: 178409

178409
type: Species
notes: FORMULA: C2H6OS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Dimethyl-sulfoxide

207613
type: SpeciesReference
stoichiometry: 1.0
species: 178408

178408
type: Species
notes: FORMULA: C2H6OS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Dimethyl-sulfoxide

181934
type: Reaction
kinetic law: 218409
reactant: 218397
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: NMN exchange

191353
type: LocalParameter
value: 0.0

191352
type: LocalParameter
value: 0.0

191350
type: LocalParameter
value: 1000.0

191349
type: LocalParameter
value: 0.0

218397
type: SpeciesReference
stoichiometry: 1.0
species: 179193

179193
type: Species
notes: FORMULA: C11H14N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: NMN

178805
type: Species
notes: FORMULA: C10H11N4O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: IMP

184798
type: Reaction
product: 306701
product: 306725
fast: false
name: ureidoglycolate dehydrogenase
notes: GENE_ASSOCIATION: b0517 SUBSYSTEM: Alternate Carbon Metabolism
product: 306713
reversible: false
reactant: 306689
kinetic law: 306737
reactant: 306677

306701
type: SpeciesReference
stoichiometry: 1.0
species: 178743

306725
type: SpeciesReference
stoichiometry: 1.0
species: 179297

179297
type: Species
notes: FORMULA: C3H3N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Oxalureate

306713
type: SpeciesReference
stoichiometry: 1.0
species: 179169

306689
type: SpeciesReference
stoichiometry: 1.0
species: 180137

180137
type: Species
notes: FORMULA: C3H5N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Ureidoglycolate

200591
type: LocalParameter
value: 0.0

200590
type: LocalParameter
value: 0.0

200587
type: LocalParameter
value: 1000.0

200586
type: LocalParameter
value: 0.0

306677
type: SpeciesReference
stoichiometry: 1.0
species: 179167

181237
type: Reaction
fast: false
product: 180557
name: ATP synthase four protons for one ATP periplasm
notes: GENE_ASSOCIATION: ( ( ( b3736 and b3737 and b3738 ) and ( b3731 and b3732 and b3733 and b3734 and b3735 ) ) or ( ( b3736 and b3737 and b3738 ) and ( b3731 and b3732 and b3733 and b3734 and b3735 ) and b3739 ) ) SUBSYSTEM: Oxidative Phosphorylation
product: 180533
reversible: true
product: 180545
reactant: 180509
kinetic law: 180569
reactant: 180496
reactant: 180521

180557
type: SpeciesReference
stoichiometry: 3.0
species: 178743

180533
type: SpeciesReference
stoichiometry: 1.0
species: 178173

180545
type: SpeciesReference
stoichiometry: 1.0
species: 178737

180509
type: SpeciesReference
stoichiometry: 4.0
species: 178745

187802
type: LocalParameter
value: 0.0

187801
type: LocalParameter
value: 0.0

187799
type: LocalParameter
value: 1000.0

187798
type: LocalParameter
value: -1000.0

180496
type: SpeciesReference
stoichiometry: 1.0
species: 178016

180521
type: SpeciesReference
stoichiometry: 1.0
species: 179463

177463
type: Species
notes: FORMULA: C7H10O10P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Dehydro-3-deoxy-D-arabino-heptonate-7-phosphate

183999
type: Reaction
kinetic law: 274725
product: 274713
reactant: 274701
notes: GENE_ASSOCIATION: ( b1377 or b0929 or b0241 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: Orotate transport via diffusion extracellular to periplasm

197398
type: LocalParameter
value: 0.0

197397
type: LocalParameter
value: 0.0

197395
type: LocalParameter
value: 1000.0

197394
type: LocalParameter
value: -1000.0

274713
type: SpeciesReference
stoichiometry: 1.0
species: 179293

179293
type: Species
notes: FORMULA: C5H3N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Orotate

274701
type: SpeciesReference
stoichiometry: 1.0
species: 179291

179291
type: Species
notes: FORMULA: C5H3N2O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Orotate

180807
type: Reaction
kinetic law: 166917
product: 166905
reactant: 166893
notes: GENE_ASSOCIATION: s0001 SUBSYSTEM: Unassigned
fast: false
reversible: true
name: aconitate isomerase spontaneous

185951
type: LocalParameter
value: 0.0

185950
type: LocalParameter
value: 0.0

185949
type: LocalParameter
value: 1000.0

185947
type: LocalParameter
value: -1000.0

166905
type: SpeciesReference
stoichiometry: 1.0
species: 177986

166893
type: SpeciesReference
stoichiometry: 1.0
species: 177987

177987
type: Species
notes: FORMULA: C6H3O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Aconitate

183864
type: Reaction
name: 5 nucleotidase IMP
reactant: 269464
product: 269500
reactant: 269476
fast: false
notes: GENE_ASSOCIATION: ( b4055 or b0480 ) SUBSYSTEM: Nucleotide Salvage Pathway
kinetic law: 269512
reversible: false
product: 269488

269464
type: SpeciesReference
stoichiometry: 1.0
species: 178739

269500
type: SpeciesReference
stoichiometry: 1.0
species: 179467

269476
type: SpeciesReference
stoichiometry: 1.0
species: 178806

178806
type: Species
notes: FORMULA: C10H11N4O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: IMP

196930
type: LocalParameter
value: 0.0

196927
type: LocalParameter
value: 0.0

196925
type: LocalParameter
value: 1000.0

196924
type: LocalParameter
value: 0.0

269488
type: SpeciesReference
stoichiometry: 1.0
species: 178815

178454
type: Species
notes: FORMULA: X
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: periplasmic-protein-disulfide-isomerase-I-oxidized

179629
type: Species
notes: FORMULA: C6H11O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Rhamnulose-1-phosphate

184172
type: Reaction
name: Phospholipase A1 phosphatidylethanolamine n C120 periplasm
reactant: 282918
kinetic law: 282978
product: 282966
reversible: false
product: 282942
fast: false
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism
reactant: 282930
product: 282954

282918
type: SpeciesReference
stoichiometry: 1.0
species: 178739

198113
type: LocalParameter
value: 0.0

198112
type: LocalParameter
value: 0.0

198110
type: LocalParameter
value: 1000.0

198109
type: LocalParameter
value: 0.0

282966
type: SpeciesReference
stoichiometry: 1.0
species: 178745

282942
type: SpeciesReference
stoichiometry: 1.0
species: 177394

282930
type: SpeciesReference
stoichiometry: 1.0
species: 179349

179349
type: Species
notes: FORMULA: C29H58N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: phosphatidylethanolamine-didodecanoyl-n-C120

282954
type: SpeciesReference
stoichiometry: 1.0
species: 178368

184570
type: Reaction
kinetic law: 297272
reversible: false
product: 297260
reactant: 297222
name: succinate transport out via proton antiport periplasm
notes: GENE_ASSOCIATION: SUBSYSTEM: Transport Inner Membrane
reactant: 297235
product: 297247
fast: false

199275
type: LocalParameter
value: 0.0

199272
type: LocalParameter
value: 0.0

199269
type: LocalParameter
value: 1000.0

199266
type: LocalParameter
value: 0.0

297260
type: SpeciesReference
stoichiometry: 1.0
species: 179735

297222
type: SpeciesReference
stoichiometry: 1.0
species: 178745

297235
type: SpeciesReference
stoichiometry: 1.0
species: 179731

297247
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182900
type: Reaction
product: 247282
reactant: 247258
notes: GENE_ASSOCIATION: ( ( b0972 and b0973 and b0974 ) or ( b2994 and b2997 ) ) SUBSYSTEM: Oxidative Phosphorylation
reversible: false
product: 247270
kinetic law: 247294
name: Hydrogenase menaquinone8 2 protons periplasm
reactant: 247234
fast: false
reactant: 247246

247282
type: SpeciesReference
stoichiometry: 1.0
species: 179103

247258
type: SpeciesReference
stoichiometry: 1.0
species: 179105

247270
type: SpeciesReference
stoichiometry: 2.0
species: 178745

194738
type: LocalParameter
value: 0.0

194736
type: LocalParameter
value: 0.0

194735
type: LocalParameter
value: 1000.0

194733
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value: 0.0

247234
type: SpeciesReference
stoichiometry: 1.0
species: 178730

247246
type: SpeciesReference
stoichiometry: 2.0
species: 178743

184173
type: Reaction
fast: false
reactant: 283002
name: Phospholipase A1 phosphatidylethanolamine n C140 periplasm
product: 283014
product: 283039
kinetic law: 283051
reactant: 282990
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism
product: 283027
reversible: false

283002
type: SpeciesReference
stoichiometry: 1.0
species: 179353

179353
type: Species
notes: FORMULA: C33H66N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: phosphatidylethanolamine-ditetradecanoyl-n-C140

283014
type: SpeciesReference
stoichiometry: 1.0
species: 177398

177398
type: Species
notes: FORMULA: C19H40NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140

283039
type: SpeciesReference
stoichiometry: 1.0
species: 179936

198118
type: LocalParameter
value: 0.0

198117
type: LocalParameter
value: 0.0

198115
type: LocalParameter
value: 1000.0

198114
type: LocalParameter
value: 0.0

282990
type: SpeciesReference
stoichiometry: 1.0
species: 178739

283027
type: SpeciesReference
stoichiometry: 1.0
species: 178745

184612
type: Reaction
product: 298959
reactant: 298935
notes: GENE_ASSOCIATION: b0915 SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
reactant: 298923
reversible: false
product: 298971
kinetic law: 298983
product: 298947
name: Tetraacyldisaccharide 4 kinase
fast: false

298959
type: SpeciesReference
stoichiometry: 1.0
species: 178743

298935
type: SpeciesReference
stoichiometry: 1.0
species: 178886

178886
type: Species
notes: FORMULA: C68H127N2O20P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Lipid-A-Disaccharide

298923
type: SpeciesReference
stoichiometry: 1.0
species: 178173

298971
type: SpeciesReference
stoichiometry: 1.0
species: 178884

178884
type: Species
notes: FORMULA: C68H126N2O23P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-3-2-3-Tetrakis-beta-hydroxymyristoyl-D-glucosaminyl-1-6-beta-D-glucosamine-1-4-bisphosphate

199555
type: LocalParameter
value: 0.0

199552
type: LocalParameter
value: 0.0

199549
type: LocalParameter
value: 1000.0

199546
type: LocalParameter
value: 0.0

298947
type: SpeciesReference
stoichiometry: 1.0
species: 178016

184235
type: Reaction
reactant: 285858
product: 285895
reversible: false
fast: false
kinetic law: 285907
name: inorganic diphosphatase
reactant: 285871
notes: GENE_ASSOCIATION: ( b4226 or b2502 or b2744 ) SUBSYSTEM: Anaplerotic Reactions
product: 285883

285858
type: SpeciesReference
stoichiometry: 1.0
species: 178737

285895
type: SpeciesReference
stoichiometry: 2.0
species: 179463

198305
type: LocalParameter
value: 0.0

198304
type: LocalParameter
value: 0.0

198303
type: LocalParameter
value: 1000.0

198302
type: LocalParameter
value: 0.0

285871
type: SpeciesReference
stoichiometry: 1.0
species: 179501

285883
type: SpeciesReference
stoichiometry: 1.0
species: 178743

182144
type: Reaction
kinetic law: 223748
product: 223723
product: 223736
reactant: 223699
reactant: 223687
notes: GENE_ASSOCIATION: ( b2763 and b2764 ) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
reversible: false
name: FAD reductase
fast: false
reactant: 223711

191925
type: LocalParameter
value: 0.0

191923
type: LocalParameter
value: 0.0

191922
type: LocalParameter
value: 1000.0

191921
type: LocalParameter
value: 0.0

223723
type: SpeciesReference
stoichiometry: 1.0
species: 178511

223736
type: SpeciesReference
stoichiometry: 1.0
species: 179171

223699
type: SpeciesReference
stoichiometry: 1.0
species: 178743

223687
type: SpeciesReference
stoichiometry: 1.0
species: 178510

223711
type: SpeciesReference
stoichiometry: 1.0
species: 179173

181353
type: Reaction
kinetic law: 190897
product: 190861
reactant: 190800
reversible: false
reactant: 190813
product: 190837
fast: false
notes: GENE_ASSOCIATION: SUBSYSTEM: Nucleotide Salvage Pathway
name: CMP nucleosidase

188292
type: LocalParameter
value: 0.0

188291
type: LocalParameter
value: 0.0

188288
type: LocalParameter
value: 1000.0

188287
type: LocalParameter
value: 0.0

190861
type: SpeciesReference
stoichiometry: 1.0
species: 179605

190800
type: SpeciesReference
stoichiometry: 1.0
species: 178274

190813
type: SpeciesReference
stoichiometry: 1.0
species: 178737

190837
type: SpeciesReference
stoichiometry: 1.0
species: 178308

178528
type: Species
notes: FORMULA: C10H10NO6Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: ferric-2-3-dihydroxybenzoylserine

181151
type: Reaction
product: 175989
product: 175977
reactant: 175953
notes: GENE_ASSOCIATION: b2938 SUBSYSTEM: Arginine and Proline Metabolism
reversible: false
name: arginine decarboxylase
kinetic law: 176001
reactant: 175965
fast: false

175989
type: SpeciesReference
stoichiometry: 1.0
species: 178281

175977
type: SpeciesReference
stoichiometry: 1.0
species: 178031

178031
type: Species
notes: FORMULA: C5H16N4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Agmatine

175953
type: SpeciesReference
stoichiometry: 1.0
species: 178143

187565
type: LocalParameter
value: 0.0

187563
type: LocalParameter
value: 0.0

187562
type: LocalParameter
value: 1000.0

187560
type: LocalParameter
value: 0.0

175965
type: SpeciesReference
stoichiometry: 1.0
species: 178745

179845
type: Species
notes: FORMULA: C3H10N
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: trimethylamine

181507
type: Reaction
kinetic law: 204324
fast: false
reactant: 204288
name: deoxycytidine transport in via proton symport periplasm
product: 204300
product: 204312
reactant: 204276
reversible: false
notes: GENE_ASSOCIATION: ( b2964 or b2393 ) SUBSYSTEM: Transport Inner Membrane

188824
type: LocalParameter
value: 0.0

188823
type: LocalParameter
value: 0.0

188822
type: LocalParameter
value: 1000.0

188821
type: LocalParameter
value: 0.0

204288
type: SpeciesReference
stoichiometry: 1.0
species: 178745

204300
type: SpeciesReference
stoichiometry: 1.0
species: 178361

178361
type: Species
notes: FORMULA: C9H13N3O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Deoxycytidine

204312
type: SpeciesReference
stoichiometry: 1.0
species: 178743

204276
type: SpeciesReference
stoichiometry: 1.0
species: 178363

178363
type: Species
notes: FORMULA: C9H13N3O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Deoxycytidine

178343
type: Species
notes: FORMULA: C10H12N5O6P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: dAMP

184101
type: Reaction
kinetic law: 279807
product: 279795
reactant: 279783
notes: GENE_ASSOCIATION: ( b3612 or b4395 or b0755 ) SUBSYSTEM: GlycolysisGluconeogenesis
fast: false
reversible: true
name: phosphoglycerate mutase

197833
type: LocalParameter
value: 0.0

197832
type: LocalParameter
value: 0.0

197829
type: LocalParameter
value: 1000.0

197828
type: LocalParameter
value: -1000.0

279795
type: SpeciesReference
stoichiometry: 1.0
species: 177827

177827
type: Species
notes: FORMULA: C3H4O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 3-Phospho-D-glycerate

279783
type: SpeciesReference
stoichiometry: 1.0
species: 177583

177583
type: Species
notes: FORMULA: C3H4O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Glycerate-2-phosphate

182010
type: Reaction
kinetic law: 219640
reactant: 219628
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Trimethylamine N oxide exchange

191630
type: LocalParameter
value: 0.0

191628
type: LocalParameter
value: 0.0

191627
type: LocalParameter
value: 1000.0

191626
type: LocalParameter
value: 0.0

219628
type: SpeciesReference
stoichiometry: 1.0
species: 179851

179851
type: Species
notes: FORMULA: C3H9NO
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Trimethylamine-N-oxide

178711
type: Species
notes: FORMULA: C10H17O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Geranyl-diphosphate

179243
type: Species
notes: FORMULA: C29H44N7O17P3S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Oct-2-enoyl-CoA

182445
type: Reaction
reactant: 236388
product: 236424
kinetic law: 236460
name: L glutamine transport via ABC system periplasm
reactant: 236376
product: 236436
fast: false
notes: GENE_ASSOCIATION: ( b0811 and b0810 and b0809 ) SUBSYSTEM: Transport Inner Membrane
product: 236412
reactant: 236400
reversible: false
product: 236448

236388
type: SpeciesReference
stoichiometry: 1.0
species: 178667

178667
type: Species
notes: FORMULA: C5H10N2O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Glutamine

236424
type: SpeciesReference
stoichiometry: 1.0
species: 178665

193416
type: LocalParameter
value: 0.0

193414
type: LocalParameter
value: 0.0

193412
type: LocalParameter
value: 1000.0

193410
type: LocalParameter
value: 0.0

236376
type: SpeciesReference
stoichiometry: 1.0
species: 178173

236436
type: SpeciesReference
stoichiometry: 1.0
species: 178743

236412
type: SpeciesReference
stoichiometry: 1.0
species: 178016

236400
type: SpeciesReference
stoichiometry: 1.0
species: 178737

236448
type: SpeciesReference
stoichiometry: 1.0
species: 179463

181587
type: Reaction
kinetic law: 208836
product: 208824
reactant: 208812
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: dUMP transport via diffusion extracellular to periplasm

189187
type: LocalParameter
value: 0.0

189186
type: LocalParameter
value: 0.0

189184
type: LocalParameter
value: 1000.0

189183
type: LocalParameter
value: -1000.0

208824
type: SpeciesReference
stoichiometry: 1.0
species: 178478

178478
type: Species
notes: FORMULA: C9H11N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: dUMP

208812
type: SpeciesReference
stoichiometry: 1.0
species: 178477

178477
type: Species
notes: FORMULA: C9H11N2O8P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: dUMP

180828
type: Reaction
kinetic law: 167330
product: 167317
reactant: 167304
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: O Acetyl L serine transport via diffusion extracellular to periplasm

185986
type: LocalParameter
value: 0.0

185985
type: LocalParameter
value: 0.0

185984
type: LocalParameter
value: 1000.0

185982
type: LocalParameter
value: -1000.0

167317
type: SpeciesReference
stoichiometry: 1.0
species: 177995

177995
type: Species
notes: FORMULA: C5H9NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: O-Acetyl-L-serine

167304
type: SpeciesReference
stoichiometry: 1.0
species: 177993

177993
type: Species
notes: FORMULA: C5H9NO4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: O-Acetyl-L-serine

181752
type: Reaction
kinetic law: 215274
reactant: 215262
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Deoxyinosine exchange

190538
type: LocalParameter
value: 0.0

190535
type: LocalParameter
value: 0.0

190532
type: LocalParameter
value: 1000.0

190529
type: LocalParameter
value: 0.0

215262
type: SpeciesReference
stoichiometry: 1.0
species: 178397

178397
type: Species
notes: FORMULA: C10H12N4O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Deoxyinosine

182090
type: Reaction
kinetic law: 220196
reactant: 220184
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: D Xylose exchange

191745
type: LocalParameter
value: 0.0

191743
type: LocalParameter
value: 0.0

191742
type: LocalParameter
value: 1000.0

191741
type: LocalParameter
value: 0.0

220184
type: SpeciesReference
stoichiometry: 1.0
species: 180215

183965
type: Reaction
notes: GENE_ASSOCIATION: ( b4254 or b0273 ) SUBSYSTEM: Arginine and Proline Metabolism
kinetic law: 273281
reactant: 273233
fast: false
product: 273245
name: ornithine carbamoyltransferase
product: 273257
reversible: true
reactant: 273220
product: 273269

197272
type: LocalParameter
value: 0.0

197270
type: LocalParameter
value: 0.0

197269
type: LocalParameter
value: 1000.0

197267
type: LocalParameter
value: -1000.0

273233
type: SpeciesReference
stoichiometry: 1.0
species: 179281

179281
type: Species
notes: FORMULA: C5H13N2O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Ornithine

273245
type: SpeciesReference
stoichiometry: 1.0
species: 178256

178256
type: Species
notes: FORMULA: C6H13N3O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Citrulline

273257
type: SpeciesReference
stoichiometry: 1.0
species: 178743

273220
type: SpeciesReference
stoichiometry: 1.0
species: 178215

178215
type: Species
notes: FORMULA: CH2NO5P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Carbamoyl-phosphate

273269
type: SpeciesReference
stoichiometry: 1.0
species: 179463

177487
type: Species
notes: FORMULA: C6H9O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Dehydro-3-deoxy-D-galactonate

177855
type: Species
notes: FORMULA: C8H8O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: 4-Hydroxyphenylacetaldehyde

181453
type: Reaction
notes: GENE_ASSOCIATION: b1919 SUBSYSTEM: Cysteine Metabolism
reactant: 200509
product: 200630
reactant: 200546
product: 200570
name: D cysteine desulfhydrase
kinetic law: 200654
product: 200594
reversible: false
fast: false

200509
type: SpeciesReference
stoichiometry: 1.0
species: 178327

200630
type: SpeciesReference
stoichiometry: 1.0
species: 179589

200546
type: SpeciesReference
stoichiometry: 1.0
species: 178737

200570
type: SpeciesReference
stoichiometry: 1.0
species: 178740

188600
type: LocalParameter
value: 0.0

188599
type: LocalParameter
value: 0.0

188598
type: LocalParameter
value: 1000.0

188597
type: LocalParameter
value: 0.0

200594
type: SpeciesReference
stoichiometry: 1.0
species: 179177

184193
type: Reaction
fast: false
name: Phospholipase A2 phosphatidate n C120 periplasm
product: 283955
product: 283967
product: 283979
kinetic law: 283991
reactant: 283931
reactant: 283943
notes: GENE_ASSOCIATION: b3821 SUBSYSTEM: Glycerophospholipid Metabolism
reversible: false

283955
type: SpeciesReference
stoichiometry: 1.0
species: 177287

283967
type: SpeciesReference
stoichiometry: 1.0
species: 178368

283979
type: SpeciesReference
stoichiometry: 1.0
species: 178745

198183
type: LocalParameter
value: 0.0

198182
type: LocalParameter
value: 0.0

198180
type: LocalParameter
value: 1000.0

198179
type: LocalParameter
value: 0.0

283931
type: SpeciesReference
stoichiometry: 1.0
species: 178739

283943
type: SpeciesReference
stoichiometry: 1.0
species: 179301

179755
type: Species
notes: FORMULA: C2H2O5S
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: sulfoacetate

184591
type: Reaction
kinetic law: 298138
product: 298126
product: 298114
reactant: 298102
notes: GENE_ASSOCIATION: ( b3061 and b3062 ) SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: false
name: L tartrate dehydratase

199415
type: LocalParameter
value: 0.0

199412
type: LocalParameter
value: 0.0

199409
type: LocalParameter
value: 1000.0

199406
type: LocalParameter
value: 0.0

298126
type: SpeciesReference
stoichiometry: 1.0
species: 179241

298114
type: SpeciesReference
stoichiometry: 1.0
species: 178737

298102
type: SpeciesReference
stoichiometry: 1.0
species: 179773

179773
type: Species
notes: FORMULA: C4H4O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-tartrate

178774
type: Species
notes: FORMULA: C40H38N4O17
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hydroxymethylbilane

182829
type: Reaction
reactant: 245738
kinetic law: 245775
reversible: true
product: 245750
notes: GENE_ASSOCIATION: b0112 SUBSYSTEM: Transport Inner Membrane
product: 245762
name: L histidine reversible transport via proton symport periplasm
reactant: 245726
fast: false

245738
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stoichiometry: 1.0
species: 178767

178767
type: Species
notes: FORMULA: C6H9N3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: L-Histidine

194601
type: LocalParameter
value: 0.0

194599
type: LocalParameter
value: 0.0

194598
type: LocalParameter
value: 1000.0

194596
type: LocalParameter
value: -1000.0

245750
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stoichiometry: 1.0
species: 178743

245762
type: SpeciesReference
stoichiometry: 1.0
species: 178765

178765
type: Species
notes: FORMULA: C6H9N3O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: L-Histidine

245726
type: SpeciesReference
stoichiometry: 1.0
species: 178745

182529
type: Reaction
kinetic law: 239350
notes: GENE_ASSOCIATION: b3926 SUBSYSTEM: Alternate Carbon Metabolism
product: 239326
reactant: 239290
product: 239314
reactant: 239302
product: 239338
fast: false
name: glycerol kinase
reversible: false

193695
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value: 0.0

193693
type: LocalParameter
value: 0.0

193691
type: LocalParameter
value: 1000.0

193690
type: LocalParameter
value: 0.0

239326
type: SpeciesReference
stoichiometry: 1.0
species: 178690

239290
type: SpeciesReference
stoichiometry: 1.0
species: 178173

239314
type: SpeciesReference
stoichiometry: 1.0
species: 178016

239302
type: SpeciesReference
stoichiometry: 1.0
species: 178696

239338
type: SpeciesReference
stoichiometry: 1.0
species: 178743

184768
type: Reaction
reactant: 305398
product: 305460
reactant: 305411
product: 305448
fast: false
notes: GENE_ASSOCIATION: b0505 SUBSYSTEM: Nitrogen Metabolism
product: 305436
reversible: false
name: Ureidoglycolate hydrolase
reactant: 305424
kinetic law: 305472

305398
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stoichiometry: 1.0
species: 178737

305460
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stoichiometry: 2.0
species: 179177

305411
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stoichiometry: 2.0
species: 178743

305448
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stoichiometry: 1.0
species: 178678

305436
type: SpeciesReference
stoichiometry: 1.0
species: 178278

305424
type: SpeciesReference
stoichiometry: 1.0
species: 180137

200451
type: LocalParameter
value: 0.0

200450
type: LocalParameter
value: 0.0

200447
type: LocalParameter
value: 1000.0

200446
type: LocalParameter
value: 0.0

184633
type: Reaction
reversible: false
product: 299794
reactant: 299782
reactant: 299770
kinetic law: 299830
notes: GENE_ASSOCIATION: b3616 SUBSYSTEM: Glycine and Serine Metabolism
name: L threonine dehydrogenase
product: 299818
fast: false
product: 299806

299794
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stoichiometry: 1.0
species: 177457

299782
type: SpeciesReference
stoichiometry: 1.0
species: 179819

299770
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stoichiometry: 1.0
species: 179167

199695
type: LocalParameter
value: 0.0

199692
type: LocalParameter
value: 0.0

199689
type: LocalParameter
value: 1000.0

199686
type: LocalParameter
value: 0.0

299818
type: SpeciesReference
stoichiometry: 1.0
species: 179169

299806
type: SpeciesReference
stoichiometry: 1.0
species: 178743

183011
type: Reaction
product: 249383
product: 249395
notes: GENE_ASSOCIATION: b0029 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
reactant: 249359
kinetic law: 249407
product: 249371
name: 1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp
reactant: 249347
reactant: 249335
reversible: false
fast: false

249383
type: SpeciesReference
stoichiometry: 1.0
species: 178816

178816
type: Species
notes: FORMULA: C5H9O7P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Isopentenyl-diphosphate

249395
type: SpeciesReference
stoichiometry: 1.0
species: 179167

249359
type: SpeciesReference
stoichiometry: 1.0
species: 179169

194928
type: LocalParameter
value: 0.0

194927
type: LocalParameter
value: 0.0

194925
type: LocalParameter
value: 1000.0

194924
type: LocalParameter
value: 0.0

249371
type: SpeciesReference
stoichiometry: 1.0
species: 178737

249347
type: SpeciesReference
stoichiometry: 1.0
species: 178743

249335
type: SpeciesReference
stoichiometry: 1.0
species: 178733

178647
type: Species
notes: FORMULA: C9H16O4N2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: gamma-glutamyl-gamma-butyraldehyde

179533
type: Species
notes: FORMULA: C5H9NO2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: L-Proline

182853
type: Reaction
kinetic law: 246233
product: 246221
product: 246209
reactant: 246196
notes: GENE_ASSOCIATION: b0352 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
reversible: false
name: 4 hydroxy 2 oxopentanoate aldolase

194645
type: LocalParameter
value: 0.0

194643
type: LocalParameter
value: 0.0

194642
type: LocalParameter
value: 1000.0

194640
type: LocalParameter
value: 0.0

246221
type: SpeciesReference
stoichiometry: 1.0
species: 179589

246209
type: SpeciesReference
stoichiometry: 1.0
species: 177935

246196
type: SpeciesReference
stoichiometry: 1.0
species: 177849

183443
type: Reaction
kinetic law: 257883
reactant: 257835
reversible: false
product: 257871
notes: GENE_ASSOCIATION: b1800 SUBSYSTEM: Alternate Carbon Metabolism
fast: false
product: 257859
reactant: 257823
name: malate decarboxylating oxidoreductase decarboxylating
product: 257847

195572
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value: 0.0

195571
type: LocalParameter
value: 0.0

195569
type: LocalParameter
value: 1000.0

195568
type: LocalParameter
value: 0.0

257835
type: SpeciesReference
stoichiometry: 1.0
species: 179167

257871
type: SpeciesReference
stoichiometry: 1.0
species: 179589

257859
type: SpeciesReference
stoichiometry: 1.0
species: 179169

257823
type: SpeciesReference
stoichiometry: 1.0
species: 178908

178908
type: Species
notes: FORMULA: C4H4O5
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Malate

257847
type: SpeciesReference
stoichiometry: 1.0
species: 178278

183170
type: Reaction
kinetic law: 252888
product: 252876
reactant: 252864
notes: GENE_ASSOCIATION: SUBSYSTEM: Lipopolysaccharide Biosynthesis Recycling
fast: false
reversible: false
name: lipid A transport via vector periplasm to extracellular

195195
type: LocalParameter
value: 0.0

195193
type: LocalParameter
value: 0.0

195192
type: LocalParameter
value: 1000.0

195190
type: LocalParameter
value: 0.0

252876
type: SpeciesReference
stoichiometry: 1.0
species: 178880

178880
type: Species
notes: FORMULA: C110H196N2O39P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: KDO-2-lipid-A

252864
type: SpeciesReference
stoichiometry: 1.0
species: 178882

178379
type: Species
notes: FORMULA: C3H6O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Dihydroxyacetone

178600
type: Species
notes: FORMULA: C157H271N2O84P4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A

181528
type: Reaction
product: 205422
name: 2 3 dihydroxycinnamate dehydrogenase
fast: false
reactant: 205398
kinetic law: 205458
notes: GENE_ASSOCIATION: b2541 SUBSYSTEM: Alternate Carbon Metabolism
reversible: false
reactant: 205410
product: 205446
product: 205434

205422
type: SpeciesReference
stoichiometry: 1.0
species: 178382

178382
type: Species
notes: FORMULA: C9H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-3-dihydroxicinnamic-acid

205398
type: SpeciesReference
stoichiometry: 1.0
species: 178238

178238
type: Species
notes: FORMULA: C9H9O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cis-3-3-carboxyethenyl-3-5-cyclohexadiene-1-2-diol

188914
type: LocalParameter
value: 0.0

188913
type: LocalParameter
value: 0.0

188911
type: LocalParameter
value: 1000.0

188910
type: LocalParameter
value: 0.0

205410
type: SpeciesReference
stoichiometry: 1.0
species: 179167

205446
type: SpeciesReference
stoichiometry: 1.0
species: 179169

205434
type: SpeciesReference
stoichiometry: 1.0
species: 178743

181920
type: Reaction
kinetic law: 218192
reactant: 218180
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Mn2 exchange

191304
type: LocalParameter
value: 0.0

191302
type: LocalParameter
value: 0.0

191301
type: LocalParameter
value: 1000.0

191299
type: LocalParameter
value: -1000.0

218180
type: SpeciesReference
stoichiometry: 1.0
species: 179087

179087
type: Species
notes: FORMULA: Mn
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Mn2

180348
type: Reaction
kinetic law: 157207
product: 157195
reactant: 157183
notes: GENE_ASSOCIATION: b2835 SUBSYSTEM: Transport Inner Membrane
fast: false
reversible: false
name: 2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm

185049
type: LocalParameter
value: 0.0

185048
type: LocalParameter
value: 0.0

185046
type: LocalParameter
value: 1000.0

185045
type: LocalParameter
value: 0.0

157195
type: SpeciesReference
stoichiometry: 1.0
species: 177408

177408
type: Species
notes: FORMULA: C21H42NO7P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161

157183
type: SpeciesReference
stoichiometry: 1.0
species: 177410

184810
type: Reaction
kinetic law: 307208
reactant: 307158
fast: false
notes: GENE_ASSOCIATION: b2406 SUBSYSTEM: Transport Inner Membrane
product: 307195
reactant: 307170
reversible: true
product: 307183
name: uridine transport in via proton symport reversible periplasm

200647
type: LocalParameter
value: 0.0

200646
type: LocalParameter
value: 0.0

200643
type: LocalParameter
value: 1000.0

200642
type: LocalParameter
value: -1000.0

307158
type: SpeciesReference
stoichiometry: 1.0
species: 178745

307195
type: SpeciesReference
stoichiometry: 1.0
species: 180149

307170
type: SpeciesReference
stoichiometry: 1.0
species: 180155

180155
type: Species
notes: FORMULA: C9H12N2O6
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Uridine

307183
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178026
type: Species
notes: FORMULA: C68H95CoN21O21P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Adenosine-GDP-cobinamide

182399
type: Reaction
reversible: false
fast: false
product: 234526
notes: GENE_ASSOCIATION: b1301 SUBSYSTEM: Alternate Carbon Metabolism
name: gamma glutamyl putrescine oxidase
reactant: 234514
reactant: 234501
product: 234538
reactant: 234489
kinetic law: 234562
product: 234550

234526
type: SpeciesReference
stoichiometry: 1.0
species: 178647

234514
type: SpeciesReference
stoichiometry: 1.0
species: 179229

234501
type: SpeciesReference
stoichiometry: 1.0
species: 178737

234538
type: SpeciesReference
stoichiometry: 1.0
species: 178734

234489
type: SpeciesReference
stoichiometry: 1.0
species: 178649

178649
type: Species
notes: FORMULA: C9H20O3N3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: gamma-glutamyl-putrescine

193128
type: LocalParameter
value: 0.0

193125
type: LocalParameter
value: 0.0

193122
type: LocalParameter
value: 1000.0

193119
type: LocalParameter
value: 0.0

234550
type: SpeciesReference
stoichiometry: 1.0
species: 179177

184128
type: Reaction
kinetic law: 281124
fast: false
reactant: 281088
product: 281100
name: phosphatidylglycerol phosphate phosphatase periplasm n C161
reactant: 281076
product: 281112
notes: GENE_ASSOCIATION: ( b1278 or b0418 ) SUBSYSTEM: Glycerophospholipid Metabolism
reversible: false

197955
type: LocalParameter
value: 0.0

197954
type: LocalParameter
value: 0.0

197952
type: LocalParameter
value: 1000.0

197951
type: LocalParameter
value: 0.0

281088
type: SpeciesReference
stoichiometry: 1.0
species: 179427

179427
type: Species
notes: FORMULA: C38H69O13P2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161

281100
type: SpeciesReference
stoichiometry: 1.0
species: 179399

281076
type: SpeciesReference
stoichiometry: 1.0
species: 178739

281112
type: SpeciesReference
stoichiometry: 1.0
species: 179467

181773
type: Reaction
kinetic law: 215662
reactant: 215650
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Fe3 exchange

190667
type: LocalParameter
value: 0.0

190666
type: LocalParameter
value: 0.0

190663
type: LocalParameter
value: 1000.0

190662
type: LocalParameter
value: -1000.0

215650
type: SpeciesReference
stoichiometry: 1.0
species: 178522

178522
type: Species
notes: FORMULA: Fe
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Fe3

183677
type: Reaction
product: 263744
notes: GENE_ASSOCIATION: b3417 SUBSYSTEM: Alternate Carbon Metabolism
product: 263732
kinetic law: 263757
reversible: true
name: Maltodextrin phosphorylase maltoheptaose
reactant: 263708
fast: false
reactant: 263720

263744
type: SpeciesReference
stoichiometry: 1.0
species: 178932

263732
type: SpeciesReference
stoichiometry: 1.0
species: 178578

196286
type: LocalParameter
value: 0.0

196284
type: LocalParameter
value: 0.0

196282
type: LocalParameter
value: 1000.0

196280
type: LocalParameter
value: -1000.0

263708
type: SpeciesReference
stoichiometry: 1.0
species: 178930

178930
type: Species
notes: FORMULA: C42H72O36
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Maltoheptaose

263720
type: SpeciesReference
stoichiometry: 1.0
species: 179463

178457
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: protein-disulfide-isomerase-II-reduced

180991
type: Reaction
product: 170839
reactant: 170803
notes: GENE_ASSOCIATION: b0522 SUBSYSTEM: Purine and Pyrimidine Biosynthesis
reactant: 170791
product: 170827
reactant: 170779
product: 170815
product: 170851
reversible: false
name: phosphoribosylaminoimidazole carboxylase
fast: false
kinetic law: 170863

170839
type: SpeciesReference
stoichiometry: 1.0
species: 178743

170803
type: SpeciesReference
stoichiometry: 1.0
species: 178748

178748
type: Species
notes: FORMULA: CHO3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Bicarbonate

170791
type: SpeciesReference
stoichiometry: 1.0
species: 178173

170827
type: SpeciesReference
stoichiometry: 1.0
species: 178016

170779
type: SpeciesReference
stoichiometry: 1.0
species: 178037

170815
type: SpeciesReference
stoichiometry: 1.0
species: 177876

177876
type: Species
notes: FORMULA: C9H11N3O9P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 5-phosphoribosyl-5-carboxyaminoimidazole

170851
type: SpeciesReference
stoichiometry: 1.0
species: 179463

186418
type: LocalParameter
value: 0.0

186416
type: LocalParameter
value: 0.0

186414
type: LocalParameter
value: 1000.0

186412
type: LocalParameter
value: 0.0

183989
type: Reaction
notes: GENE_ASSOCIATION: ( b3843 or b2311 ) SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
reactant: 274229
name: Octaprenyl hydroxybenzoate decarboxylase
fast: false
product: 274241
reactant: 274217
kinetic law: 274265
reversible: false
product: 274253

274229
type: SpeciesReference
stoichiometry: 1.0
species: 178743

274241
type: SpeciesReference
stoichiometry: 1.0
species: 177577

177577
type: Species
notes: FORMULA: C46H70O
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Octaprenylphenol

274217
type: SpeciesReference
stoichiometry: 1.0
species: 177824

197360
type: LocalParameter
value: 0.0

197358
type: LocalParameter
value: 0.0

197357
type: LocalParameter
value: 1000.0

197355
type: LocalParameter
value: 0.0

274253
type: SpeciesReference
stoichiometry: 1.0
species: 178278

178190
type: Species
notes: FORMULA: C4H7O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Butyrate-n-C40

181782
type: Reaction
kinetic law: 215807
reactant: 215795
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: Ferrichrome minus Fe III exchange

190709
type: LocalParameter
value: 0.0

190708
type: LocalParameter
value: 0.0

190705
type: LocalParameter
value: 1000.0

190704
type: LocalParameter
value: 0.0

215795
type: SpeciesReference
stoichiometry: 1.0
species: 178539

181033
type: Reaction
product: 172160
reactant: 172099
kinetic law: 172172
reactant: 172111
fast: false
reactant: 172123
product: 172135
reversible: false
notes: GENE_ASSOCIATION: b1385 SUBSYSTEM: Alternate Carbon Metabolism
product: 172147
name: aldehyde dehydrogenase phenylacetaldehyde NAD

172160
type: SpeciesReference
stoichiometry: 1.0
species: 179327

172099
type: SpeciesReference
stoichiometry: 1.0
species: 178737

186565
type: LocalParameter
value: 0.0

186563
type: LocalParameter
value: 0.0

186561
type: LocalParameter
value: 1000.0

186559
type: LocalParameter
value: 0.0

172111
type: SpeciesReference
stoichiometry: 1.0
species: 179167

172123
type: SpeciesReference
stoichiometry: 1.0
species: 179329

172135
type: SpeciesReference
stoichiometry: 2.0
species: 178743

172147
type: SpeciesReference
stoichiometry: 1.0
species: 179169

177791
type: Species
notes: FORMULA: C6H9O3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: S-3-Methyl-2-oxopentanoate

181616
type: Reaction
notes: GENE_ASSOCIATION: b1288 SUBSYSTEM: Cell Envelope Biosynthesis
name: enoyl acyl carrier protein reductase NADPH n C181
reactant: 210783
reactant: 210795
fast: false
kinetic law: 210843
product: 210819
reactant: 210807
reversible: false
product: 210831

210783
type: SpeciesReference
stoichiometry: 1.0
species: 178743

210795
type: SpeciesReference
stoichiometry: 1.0
species: 179173

189349
type: LocalParameter
value: 0.0

189347
type: LocalParameter
value: 0.0

189345
type: LocalParameter
value: 1000.0

189342
type: LocalParameter
value: 0.0

210819
type: SpeciesReference
stoichiometry: 1.0
species: 179171

210807
type: SpeciesReference
stoichiometry: 1.0
species: 179759

179759
type: Species
notes: FORMULA: C29H51N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-3-cis-11-vacceoyl-acyl-carrier-protein

210831
type: SpeciesReference
stoichiometry: 1.0
species: 179271

179271
type: Species
notes: FORMULA: C29H53N2O8PRS
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: cis-octadec-11-enoyl-acyl-carrier-protein-n-C181

178536
type: Species
notes: FORMULA: C27H42FeN9O12
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177169
name: Ferrichrome

181995
type: Reaction
kinetic law: 219400
reactant: 219388
notes: GENE_ASSOCIATION: SUBSYSTEM: Exchange
fast: false
reversible: true
name: sulfoacetate exchange

191579
type: LocalParameter
value: 0.0

191577
type: LocalParameter
value: 0.0

191576
type: LocalParameter
value: 1000.0

191575
type: LocalParameter
value: 0.0

219388
type: SpeciesReference
stoichiometry: 1.0
species: 179755

183854
type: Reaction
kinetic law: 269211
product: 269199
product: 269187
reactant: 269175
notes: GENE_ASSOCIATION: b2262 SUBSYSTEM: Cofactor and Prosthetic Group Biosynthesis
fast: false
reversible: false
name: naphthoate synthase

196895
type: LocalParameter
value: 0.0

196892
type: LocalParameter
value: 0.0

196890
type: LocalParameter
value: 1000.0

196889
type: LocalParameter
value: 0.0

269199
type: SpeciesReference
stoichiometry: 1.0
species: 178385

178385
type: Species
notes: FORMULA: C11H7O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 1-4-Dihydroxy-2-naphthoate

269187
type: SpeciesReference
stoichiometry: 1.0
species: 178283

269175
type: SpeciesReference
stoichiometry: 1.0
species: 179655

184654
type: Reaction
kinetic law: 300754
product: 300730
reactant: 300718
reversible: true
notes: GENE_ASSOCIATION: ( b2935 or b2465 ) SUBSYSTEM: Pentose Phosphate Pathway
fast: false
reactant: 300706
name: transketolase
product: 300742

199835
type: LocalParameter
value: 0.0

199832
type: LocalParameter
value: 0.0

199829
type: LocalParameter
value: 1000.0

199826
type: LocalParameter
value: -1000.0

300730
type: SpeciesReference
stoichiometry: 1.0
species: 178507

300718
type: SpeciesReference
stoichiometry: 1.0
species: 180206

300706
type: SpeciesReference
stoichiometry: 1.0
species: 178485

178485
type: Species
notes: FORMULA: C4H7O7P
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: D-Erythrose-4-phosphate

300742
type: SpeciesReference
stoichiometry: 1.0
species: 178581

184250
type: Reaction
product: 286485
product: 286460
name: phosphoenolpyruvate carboxykinase
reversible: false
kinetic law: 286497
reactant: 286448
notes: GENE_ASSOCIATION: b3403 SUBSYSTEM: Anaplerotic Reactions
fast: false
product: 286473
reactant: 286436

286485
type: SpeciesReference
stoichiometry: 1.0
species: 179379

286460
type: SpeciesReference
stoichiometry: 1.0
species: 178016

198345
type: LocalParameter
value: 0.0

198344
type: LocalParameter
value: 0.0

198343
type: LocalParameter
value: 1000.0

198342
type: LocalParameter
value: 0.0

286448
type: SpeciesReference
stoichiometry: 1.0
species: 179241

286473
type: SpeciesReference
stoichiometry: 1.0
species: 178278

286436
type: SpeciesReference
stoichiometry: 1.0
species: 178173

181548
type: Reaction
kinetic law: 206671
product: 206659
reactant: 206647
notes: GENE_ASSOCIATION: ( b0241 or b0929 or b1377 or b2215 ) SUBSYSTEM: Transport Outer Membrane Porin
fast: false
reversible: true
name: deoxyinosine transport via diffusion extracellular to periplasm

189002
type: LocalParameter
value: 0.0

189001
type: LocalParameter
value: 0.0

188999
type: LocalParameter
value: 1000.0

188998
type: LocalParameter
value: -1000.0

206659
type: SpeciesReference
stoichiometry: 1.0
species: 178398

206647
type: SpeciesReference
stoichiometry: 1.0
species: 178397

178250
type: Species
notes: FORMULA: C9H7O2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: trans-Cinnamate

182874
type: Reaction
kinetic law: 246644
product: 246632
reactant: 246608
reversible: false
product: 246620
name: Hydroxypyruvate reductase NADPH
fast: false
notes: GENE_ASSOCIATION: ( b3553 or b1033 ) SUBSYSTEM: Alternate Carbon Metabolism
reactant: 246596
reactant: 246584

194683
type: LocalParameter
value: 0.0

194682
type: LocalParameter
value: 0.0

194680
type: LocalParameter
value: 1000.0

194679
type: LocalParameter
value: 0.0

246632
type: SpeciesReference
stoichiometry: 1.0
species: 179171

246608
type: SpeciesReference
stoichiometry: 1.0
species: 179173

246620
type: SpeciesReference
stoichiometry: 1.0
species: 178693

178693
type: Species
notes: FORMULA: C3H5O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: R-Glycerate

246596
type: SpeciesReference
stoichiometry: 1.0
species: 178781

178781
type: Species
notes: FORMULA: C3H3O4
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: Hydroxypyruvate

246584
type: SpeciesReference
stoichiometry: 1.0
species: 178743

178461
type: Species
notes: FORMULA: XH2
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: periplasmic-disulfide-isomerasethiol-disulphide-oxidase-reduced

181549
type: Reaction
notes: GENE_ASSOCIATION: ( b3012 or b0207 ) SUBSYSTEM: Alternate Carbon Metabolism
reactant: 206683
reversible: false
reactant: 206707
product: 206719
name: 2 5 diketo D gluconate reductase
reactant: 206695
fast: false
product: 206731
kinetic law: 206743

206683
type: SpeciesReference
stoichiometry: 1.0
species: 177380

206707
type: SpeciesReference
stoichiometry: 1.0
species: 179173

206719
type: SpeciesReference
stoichiometry: 1.0
species: 177493

177493
type: Species
notes: FORMULA: C6H9O7
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: 2-Dehydro-L-gulonate

206695
type: SpeciesReference
stoichiometry: 1.0
species: 178743

206731
type: SpeciesReference
stoichiometry: 1.0
species: 179171

189007
type: LocalParameter
value: 0.0

189006
type: LocalParameter
value: 0.0

189004
type: LocalParameter
value: 1000.0

189003
type: LocalParameter
value: 0.0

179117
type: Species
notes: FORMULA: C68H102N12O37
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177171
name: two-disacharide-linked-murein-units-tripeptide-crosslinked-tripeptide-A2pm-A2pm--middle-of-chain

180369
type: Reaction
product: 157692
product: 157668
product: 157680
reactant: 157643
reactant: 157655
fast: false
kinetic law: 157704
name: 2 acyl glycerophospho ethanolamine acyltransferase n C161
reactant: 157631
reversible: false
notes: GENE_ASSOCIATION: b2836 SUBSYSTEM: Glycerophospholipid Metabolism

157692
type: SpeciesReference
stoichiometry: 1.0
species: 179501

157668
type: SpeciesReference
stoichiometry: 1.0
species: 178085

157680
type: SpeciesReference
stoichiometry: 1.0
species: 179363

179363
type: Species
notes: FORMULA: C37H70N1O8P1
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 177168
name: phosphatidylethanolamine-dihexadec-9enoyl-n-C161

157643
type: SpeciesReference
stoichiometry: 1.0
species: 178173

157655
type: SpeciesReference
stoichiometry: 1.0
species: 178753

185084
type: LocalParameter
value: 0.0

185083
type: LocalParameter
value: 0.0

185081
type: LocalParameter
value: 1000.0

185080
type: LocalParameter
value: 0.0

157631
type: SpeciesReference
stoichiometry: 1.0
species: 177408

182189
type: Reaction
product: 225837
kinetic law: 225849
reactant: 225812
reversible: false
name: Fe III hydroxamate unloaded secretion extracellular
reactant: 225800
fast: false
product: 225824
notes: GENE_ASSOCIATION: SUBSYSTEM: Inorganic Ion Transport and Metabolism

225837
type: SpeciesReference
stoichiometry: 1.0
species: 178743

192078
type: LocalParameter
value: 0.0

192077
type: LocalParameter
value: 0.0

192076
type: LocalParameter
value: 1000.0

192074
type: LocalParameter
value: 0.0