MODEL1101100000
type: SBMLModel
parameter: 093617
parameter: 093648
reaction: 093496
reaction: 093456
species: 093175
species: 093208
species: 092901
parameter: 093629
species: 093192
parameter: 093601
species: 093028
area units: 076543
parameter: 093607
species: 092637
species: 092818
parameter: 093599
parameter: 093656
parameter: 093671
reaction: 093536
reaction: 093354
parameter: 093612
parameter: 093643
parameter: 093657
reaction: 093282
species: 092948
volume units: 076518
species: 093143
species: 092654
parameter: 093644
reaction: 093374
species: 092995
parameter: 093663
units def: 076543
notes: This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
species: 092932
compartment: 092604
parameter: 093595
name: Bakker1997_Glycolysis
parameter: 093620
parameter: 093676
reaction: 093561
parameter: 093658
parameter: 093637
species: 092979
species: 092964
parameter: 093677
species: 092802
reaction: 093513
parameter: 093649
units def: 076518
reaction: 093477
reaction: 093394
reaction: 093414
species: 093044
parameter: 093666
parameter: 093632
parameter: 093672
species: 092867
parameter: 093622
species: 092719
parameter: 093633
species: 093094
time units: 076591
species: 092703
parameter: 093639
reaction: 093331
units def: 076494
parameter: 093604
units def: 076567
parameter: 093596
species: 092769
curated: false
parameter: 093615
parameter: 093621
species: 092786
parameter: 093652
species: 093224
species: 093011
parameter: 093634

093617
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re5_s17

093648
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re11_s4_s25

076494
type: SBMLUnitsDef
unit: 076506
name: substance

076506
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

093496
type: Reaction
kinetic law: 077373
product: 077361
reactant: 077349
fast: false
reversible: false

077361
type: SpeciesReference
stoichiometry: 1.0
species: 092995

092995
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.46
in compartment: 092604
name: 3PG

092604
type: Compartment
constant: true
units: 076518
size: 1.0
spatial dimensions: 3.0
name: cytosol

076518
type: SBMLUnitsDef
unit: 076530
name: volume

076530
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: LITRE

077349
type: SpeciesReference
stoichiometry: 1.0
species: 093028

093028
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.085
in compartment: 092604
name: 2PG

093456
type: Reaction
fast: false
kinetic law: 077289
product: 077265
reversible: false
product: 077253
reactant: 077229
modifier: 077277
reactant: 077241

077265
type: SpeciesReference
stoichiometry: 1.0
species: 092654

092654
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: ATP

077253
type: SpeciesReference
stoichiometry: 1.0
species: 092995

077229
type: SpeciesReference
stoichiometry: 1.0
species: 092917

092917
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: 13DPG

093011
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.16
in compartment: 092604
name: 2.7.2.3

077241
type: SpeciesReference
stoichiometry: 1.0
species: 092670

092670
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 1.4
in compartment: 092604
name: ADP

093175
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: ALANIN

093208
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: Ca_super_2+_endsuper_

092901
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: 5.3.1.1

093629
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re7_s18

093192
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: ACETYLCOA

093601
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re1_s5

076615
type: SBMLUnitsDef
unit: 076627
name: per time

076627
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

076543
type: SBMLUnitsDef
unit: 076555
name: area

076555
type: SBMLUnit
exponent: 2.0
scale: 0
multipler: 1.0
kind: METRE

093607
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re3_s8

092637
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: GLU6P

092818
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: FRU26DP

093599
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re1_s3_s5

093656
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re12_s27

093671
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re15_s28_s47

093536
type: Reaction
modifier: 077517
product: 077493
reactant: 077481
modifier: 077529
kinetic law: 077565
modifier: 077553
modifier: 077541
fast: false
product: 077505
reactant: 077469
reversible: false

077493
type: SpeciesReference
stoichiometry: 1.0
species: 093143

093143
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: PYRUVATE

077481
type: SpeciesReference
stoichiometry: 1.0
species: 092670

093224
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.16
in compartment: 092604
name: 2.7.1.40

077505
type: SpeciesReference
stoichiometry: 1.0
species: 092654

077469
type: SpeciesReference
stoichiometry: 1.0
species: 093062

093062
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.57
in compartment: 092604
name: PEP

093354
type: Reaction
kinetic law: 077001
modifier: 076989
product: 076977
reactant: 076965
fast: false
reversible: false

092883
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 1.23
in compartment: 092604
name: 4.1.2.7

076977
type: SpeciesReference
stoichiometry: 1.0
species: 092867

092867
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: G3P

076965
type: SpeciesReference
stoichiometry: 1.0
species: 092753

092753
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: FRU16DP

093612
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re3_s14

093643
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re9_s20

093657
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re12_s27

093282
type: Reaction
kinetic law: 076809
modifier: 076797
product: 076785
reactant: 076773
fast: false
reversible: false

092736
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: 5.3.1.9

076785
type: SpeciesReference
stoichiometry: 1.0
species: 092637

076773
type: SpeciesReference
stoichiometry: 1.0
species: 092703

092703
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: FRU6P

092948
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: IODACTE

093644
type: Parameter
constant: true
units: 076615
value: 1.0
name: kass_re10

093374
type: Reaction
kinetic law: 077049
modifier: 077037
product: 077025
reactant: 077013
fast: false
reversible: false

077025
type: SpeciesReference
stoichiometry: 1.0
species: 092851

092851
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.61
in compartment: 092604
name: DHAP

077013
type: SpeciesReference
stoichiometry: 1.0
species: 092867

093663
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re14_s29

092932
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.5
in compartment: 092604
name: 1.2.1.12

093595
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re1_s2

093620
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re5_s17

093676
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re15_s47

093561
type: Reaction
kinetic law: 077601
product: 077589
reactant: 077577
fast: false
reversible: false

077589
type: SpeciesReference
stoichiometry: 1.0
species: 093062

077577
type: SpeciesReference
stoichiometry: 1.0
species: 093143

093658
type: Parameter
constant: true
units: 076615
value: 1.0
name: kass_re13

093637
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re9_s21

092979
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: NAD

092964
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: NAD

093677
type: Parameter
constant: true
units: 076615
value: 1.0
name: kass_re21

092802
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: AMP

093513
type: Reaction
product: 077397
fast: false
kinetic law: 077457
reactant: 077385
modifier: 077433
reversible: false
product: 077409
modifier: 077445
modifier: 077421

077397
type: SpeciesReference
stoichiometry: 1.0
species: 093062

077385
type: SpeciesReference
stoichiometry: 1.0
species: 093028

093126
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: PHOSPHATE

077409
type: SpeciesReference
stoichiometry: 1.0
species: 093094

093094
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: H_sub_2_endsub_O

093110
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: FLURIDE

093077
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: 4.2.1.11

093649
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re11_s19_s25

093477
type: Reaction
kinetic law: 077337
modifier: 077325
product: 077313
reactant: 077301
fast: false
reversible: false

093044
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: 5.4.2.1

077313
type: SpeciesReference
stoichiometry: 1.0
species: 093028

077301
type: SpeciesReference
stoichiometry: 1.0
species: 092995

093394
type: Reaction
kinetic law: 077097
modifier: 077085
product: 077073
reactant: 077061
fast: false
reversible: false

077073
type: SpeciesReference
stoichiometry: 1.0
species: 092867

077061
type: SpeciesReference
stoichiometry: 1.0
species: 092851

093414
type: Reaction
reactant: 077109
modifier: 077169
product: 077145
fast: false
modifier: 077157
product: 077133
kinetic law: 077181
reversible: false
reactant: 077121

077109
type: SpeciesReference
stoichiometry: 1.0
species: 092867

077145
type: SpeciesReference
stoichiometry: 1.0
species: 092979

077133
type: SpeciesReference
stoichiometry: 1.0
species: 092917

077121
type: SpeciesReference
stoichiometry: 1.0
species: 092964

093666
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re15_s46

093632
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re8_s18

093672
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re15_s4_s47

093622
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re6_s17

092719
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: 2DOGLP

093633
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re8_s18

076591
type: SBMLUnitsDef
unit: 076603
name: time

076603
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND

093639
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re9_s22_s20

093331
type: Reaction
kinetic law: 076953
modifier: 076941
product: 076929
reactant: 076917
fast: false
reversible: false

076929
type: SpeciesReference
stoichiometry: 1.0
species: 092851

076917
type: SpeciesReference
stoichiometry: 1.0
species: 092753

093604
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re2_s7

076567
type: SBMLUnitsDef
unit: 076579
name: length

076579
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: METRE

093596
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re1_s1_s5

092769
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: CITRATE

093615
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re4_s14

093621
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re6_s17

092786
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: cAMP

093652
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re11_s25

093634
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re8_s18

093627
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re7_s18

093638
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re9_s16_s20

093653
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re12_s27

093628
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re7_s18

092620
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.1
in compartment: 092604
name: GLU

093600
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re1_s3_s5

092686
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.25
in compartment: 092604
name: 2.7.1.1

093647
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re11_s19_s25

093610
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re3_s8

093673
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re15_s28_s47

093661
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re14_s29

093611
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re4_s14

093642
type: Parameter
constant: true
units: 076494
value: 1.0
name: kmc_re9_s16_s20

093241
type: Reaction
modifier: 076689
modifier: 076701
reactant: 076653
kinetic law: 076713
reversible: false
product: 076665
fast: false
product: 076677
reactant: 076641

076653
type: SpeciesReference
stoichiometry: 1.0
species: 092654

076665
type: SpeciesReference
stoichiometry: 1.0
species: 092637

076677
type: SpeciesReference
stoichiometry: 1.0
species: 092670

076641
type: SpeciesReference
stoichiometry: 1.0
species: 092620

093667
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re15_s45

093263
type: Reaction
kinetic law: 076761
modifier: 076749
product: 076737
reactant: 076725
fast: false
reversible: false

076737
type: SpeciesReference
stoichiometry: 1.0
species: 092703

076725
type: SpeciesReference
stoichiometry: 1.0
species: 092637

093623
type: Parameter
constant: true
units: 076494
value: 1.0
name: ksp_re6_s17

093438
type: Reaction
kinetic law: 077217
product: 077205
reactant: 077193
fast: false
reversible: false

077205
type: SpeciesReference
stoichiometry: 1.0
species: 092867

077193
type: SpeciesReference
stoichiometry: 1.0
species: 092917

093668
type: Parameter
constant: true
units: 076494
value: 1.0
name: kic_re15_s44

093662
type: Parameter
constant: true
units: DIMENSIONLESS
value: 1.0
name: hic_re14_s29

093605
type: Parameter
constant: true
units: 076615
value: 1.0
name: kass_re2

092835
type: Species
constant: false
boundary condition: false
has only substance units: false
substance units: 076494
initial concentration: NaN
initial amount: 0.39
in compartment: 092604
name: 2.7.1.11

093159
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: 092604
name: s38

092603
type: Compartment
constant: true
units: 076518
size: 1.0
spatial dimensions: 3.0

093606
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re3_s8

093304
type: Reaction
product: 076833
modifier: 076893
reversible: false
reactant: 076821
modifier: 076845
modifier: 076857
fast: false
kinetic law: 076905
modifier: 076881
modifier: 076869

076833
type: SpeciesReference
stoichiometry: 1.0
species: 092753

076821
type: SpeciesReference
stoichiometry: 1.0
species: 092703

093616
type: Parameter
constant: true
units: 076615
value: 1.0
name: kcat_re5_s17