MODEL1012300000
type: SBMLModel
species: histd c
reaction: GLCptspp
species: akg c
species: 5aprbu c
species: imacp c
reaction: RNDR3
reaction: DUTPDP
reaction: UP gln 45 L 40 c 41
species: ACP c
species: thmpp c
reaction: ASAD
species: pg EC c
reaction: CHORM
reaction: EF 5mtr 40 c 41
species: fum c
reaction: SHKK
reaction: PFK
species: chor c
reaction: EF phe 45 L 40 c 41
species: leu 45 L c
species: gly c
species: hisp c
reaction: RBFSa
reaction: NADS1
reaction: NADP dummy
species: dhf c
reaction: DHAD1
reaction: HCO3E
reaction: DAPE
reaction: GLUR
reaction: METS
species: atp c
species: cmp c
species: ade c
species: co2 c
reaction: DBTS
reaction: NNATr
reaction: DTMPK
reaction: SDPDS
notes: This model is from the article: Genetic and metabolic determinants of nutritional phenotype in an insect-bacterial symbiosis. MacDonald SJ, Thomas GH, Douglas AE. Mol Ecol. 2011 May;20(10):2073-84. 21392141 , Abstract: The pervasive influence of resident microorganisms on the phenotype of their hosts is exemplified by the intracellular bacterium Buchnera aphidicola, which provides its aphid partner with essential amino acids (EAAs). We investigated variation in the dietary requirement for EAAs among four pea aphid (Acyrthosiphon pisum) clones. Buchnera-derived nitrogen contributed to the synthesis of all EAAs for which aphid clones required a dietary supply, and to none of the EAAs for which all four clones had no dietary requirement, suggesting that low total dietary nitrogen may select for reduced synthesis of certain EAAs in some aphid clones. The sequenced Buchnera genomes showed that the EAA nutritional phenotype (i.e. the profile of dietary EAAs required by the aphid) cannot be attributed to sequence variation of Buchnera genes coding EAA biosynthetic enzymes. Metabolic modelling by flux balance analysis demonstrated that EAA output from Buchnera can be determined precisely by the flux of host metabolic precursors to Buchnera. Specifically, the four EAA nutritional phenotypes could be reproduced by metabolic models with unique profiles of host inputs, dominated by variation in supply of aspartate, homocysteine and glutamate. This suggests that the nutritional phenotype of the symbiosis is determined principally by host metabolism and transporter genes that regulate nutrient supply to Buchnera. Intraspecific variation in the nutritional phenotype of symbioses is expected to mediate partitioning of plant resources among aphid genotypes, potentially promoting the genetic subdivision of aphid populations. In this way, microbial symbioses may play an important role in the evolutionary diversification of phytophagous insects. This model originates from BioModels Dat…
reaction: NDPK6
species: nadph c
species: 3mob c
reaction: CHORS
species: dump c
species: methf c
species: q8h2 c
reaction: UP asp 45 L 40 c 41
reaction: ACPS1
reaction: DPCOAK
reaction: OMPDC
species: 2dhp c
reaction: GMPR
species: hcys 45 L c
reaction: FBA
reaction: EF met 45 L 40 c 41
reaction: PGM
species: o2 c
species: fmnh2 c
species: dtmp c
reaction: TRPS1
reaction: OMCDC
reaction: UP uppg3
species: dttp c
reaction: PUNP6
species: utp c
reaction: DAPDC
species: ru5p 45 D c
reaction: SHK3Dr
species: spmd c
species: orot5p c
reaction: MTAN
species: gthrd c
species: asp 45 L c
reaction: ANPRT
species: acorn c
species: acser c
reaction: PUNP1
reaction: TPI

histd c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: histd

c
type: Compartment
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0
name: _c_

volume
type: SBMLUnitsDef
unit: CDMT02139
name: volume

CDMT02139
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE

GLCptspp
type: Reaction
kinetic law: CDMT00478
product: CDMT00477
product: CDMT00476
reactant: CDMT00475
reactant: CDMT00474
fast: false
reversible: false
name: D-glucose transport via PEP:Pyr PTS (periplasm)

556542
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02137
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 2.7777E-4
kind: SECOND

CDMT02136
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: GRAM

CDMT02135
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

CDMT00481
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00480
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00479
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00477
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

pyr c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pyr

CDMT00476
type: SpeciesReference
stoichiometry: 1.0
species: g6p c

g6p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: g6p

CDMT00475
type: SpeciesReference
stoichiometry: 1.0
species: pep c

pep c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pep

CDMT00474
type: SpeciesReference
stoichiometry: 1.0
species: glc 45 D p

glc 45 D p
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: p
name: glc-D

p
type: Compartment
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0
name: _p_

akg c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: akg

5aprbu c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 5aprbu

imacp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: imacp

RNDR3
type: Reaction
kinetic law: CDMT00518
fast: false
name: ribonucleoside-diphosphate reductase (CDP)
reactant: CDMT00514
product: CDMT00517
reversible: false
reactant: CDMT00513
product: CDMT00516
product: CDMT00515

556552
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00521
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00520
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00519
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00514
type: SpeciesReference
stoichiometry: 1.0
species: trdrd c

trdrd c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: trdrd

CDMT00517
type: SpeciesReference
stoichiometry: 1.0
species: trdox c

trdox c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: trdox

CDMT00513
type: SpeciesReference
stoichiometry: 1.0
species: cdp c

cdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: cdp

CDMT00516
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

h2o c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: h2o

CDMT00515
type: SpeciesReference
stoichiometry: 1.0
species: dcdp c

dcdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dcdp

DUTPDP
type: Reaction
product: CDMT02118
kinetic law: CDMT02119
reversible: false
reactant: CDMT02115
fast: false
reactant: CDMT02114
product: CDMT02116
name: dUTP diphosphatase
product: CDMT02117

CDMT02118
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

ppi c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ppi

556873
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02122
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02121
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02120
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02115
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT02114
type: SpeciesReference
stoichiometry: 1.0
species: dutp c

dutp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dutp

CDMT02116
type: SpeciesReference
stoichiometry: 1.0
species: dump c

dump c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dump

CDMT02117
type: SpeciesReference
stoichiometry: 1.0
species: h c

h c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: h

UP gln 45 L 40 c 41
type: Reaction
kinetic law: CDMT01729
product: CDMT01728
fast: false
reversible: false
name: gln-L exchange

556798
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01732
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01731
type: LocalParameter
units: mmol per gDW per hr
value: 100.0

CDMT01730
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01728
type: SpeciesReference
stoichiometry: 1.0
species: gln 45 L c

gln 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gln-L

ACP c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ACP

thmpp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: thmpp

ASAD
type: Reaction
reactant: CDMT01619
reactant: CDMT01620
kinetic law: CDMT01624
reactant: CDMT01618
product: CDMT01623
reversible: false
fast: false
product: CDMT01621
name: aspartate-semialdehyde dehydrogenase
product: CDMT01622

CDMT01619
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01620
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

nadph c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nadph

556786
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01627
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01626
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01625
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01618
type: SpeciesReference
stoichiometry: 1.0
species: 4pasp c

4pasp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 4pasp

CDMT01623
type: SpeciesReference
stoichiometry: 1.0
species: pi c

pi c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pi

CDMT01621
type: SpeciesReference
stoichiometry: 1.0
species: aspsa c

aspsa c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: aspsa

CDMT01622
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

nadp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nadp

pg EC c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pg_EC

CHORM
type: Reaction
kinetic law: CDMT00973
product: CDMT00972
reactant: CDMT00971
fast: false
reversible: false
name: chorismate mutase

556670
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00976
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00975
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00974
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00972
type: SpeciesReference
stoichiometry: 1.0
species: pphn c

pphn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pphn

CDMT00971
type: SpeciesReference
stoichiometry: 1.0
species: chor c

chor c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: chor

EF 5mtr 40 c 41
type: Reaction
kinetic law: CDMT01242
reactant: CDMT01240
fast: false
reversible: false
name: 5mtr efflux

556718
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01245
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01244
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01243
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01240
type: SpeciesReference
stoichiometry: 1.0
species: 5mtr c

5mtr c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 5mtr

fum c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fum

SHKK
type: Reaction
product: CDMT00846
name: shikimate kinase
reversible: false
product: CDMT00845
product: CDMT00844
kinetic law: CDMT00847
reactant: CDMT00843
reactant: CDMT00842
fast: false

CDMT00846
type: SpeciesReference
stoichiometry: 1.0
species: skm5p c

skm5p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: skm5p

CDMT00845
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00844
type: SpeciesReference
stoichiometry: 1.0
species: adp c

adp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: adp

556637
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00850
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00849
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00848
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00843
type: SpeciesReference
stoichiometry: 1.0
species: skm c

skm c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: skm

CDMT00842
type: SpeciesReference
stoichiometry: 1.0
species: atp c

atp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: atp

PFK
type: Reaction
product: CDMT02006
reactant: CDMT02004
product: CDMT02008
name: phosphofructokinase
reversible: false
product: CDMT02007
reactant: CDMT02005
kinetic law: CDMT02009
fast: false

CDMT02006
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT02004
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT02008
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT02007
type: SpeciesReference
stoichiometry: 1.0
species: fdp c

fdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fdp

CDMT02005
type: SpeciesReference
stoichiometry: 1.0
species: f6p c

f6p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: f6p

556851
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02012
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02011
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02010
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

EF phe 45 L 40 c 41
type: Reaction
kinetic law: CDMT00891
reactant: CDMT00889
fast: false
reversible: false
name: L-Phenylalanine exchange

556648
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00894
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00893
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00892
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00889
type: SpeciesReference
stoichiometry: 1.0
species: phe 45 L c

phe 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: phe-L

leu 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: leu-L

gly c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gly

hisp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: hisp

RBFSa
type: Reaction
fast: false
reactant: CDMT00238
reactant: CDMT00239
product: CDMT00240
reversible: false
product: CDMT00242
kinetic law: CDMT00243
product: CDMT00241
name: riboflavin synthase

CDMT00238
type: SpeciesReference
stoichiometry: 1.0
species: 4r5au c

4r5au c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 4r5au

CDMT00239
type: SpeciesReference
stoichiometry: 1.0
species: db4p c

db4p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: db4p

CDMT00240
type: SpeciesReference
stoichiometry: 1.0
species: dmlz c

dmlz c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dmlz

CDMT00242
type: SpeciesReference
stoichiometry: 1.0
species: pi c

556480
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00246
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00245
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00244
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00241
type: SpeciesReference
stoichiometry: 2.0
species: h2o c

NADS1
type: Reaction
product: CDMT00431
fast: false
kinetic law: CDMT00434
product: CDMT00430
product: CDMT00433
reversible: false
reactant: CDMT00427
reactant: CDMT00428
product: CDMT00432
name: NAD synthase (nh3)
reactant: CDMT00429

CDMT00431
type: SpeciesReference
stoichiometry: 1.0
species: h c

556530
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00437
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00436
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00435
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00430
type: SpeciesReference
stoichiometry: 1.0
species: amp c

amp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: amp

CDMT00433
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00427
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00428
type: SpeciesReference
stoichiometry: 1.0
species: dnad c

dnad c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dnad

CDMT00432
type: SpeciesReference
stoichiometry: 1.0
species: nad c

nad c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nad

CDMT00429
type: SpeciesReference
stoichiometry: 1.0
species: nh4 c

nh4 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nh4

NADP dummy
type: Reaction
kinetic law: CDMT02131
product: CDMT02130
reactant: CDMT02129
fast: false
reversible: false
name: NADP dummy

556877
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02134
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02133
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02132
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT02130
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT02129
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

dhf c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dhf

DHAD1
type: Reaction
kinetic law: CDMT01429
product: CDMT01428
product: CDMT01427
reactant: CDMT01426
fast: false
reversible: false
name: "dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)"

556750
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01432
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01431
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01430
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01428
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01427
type: SpeciesReference
stoichiometry: 1.0
species: 3mob c

3mob c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3mob

CDMT01426
type: SpeciesReference
stoichiometry: 1.0
species: 23dhmb c

23dhmb c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 23dhmb

HCO3E
type: Reaction
kinetic law: CDMT01036
product: CDMT01035
product: CDMT01034
reactant: CDMT01033
reactant: CDMT01032
fast: false
reversible: false
name: HCO3 equilibration reaction

556680
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01039
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01038
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01037
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01035
type: SpeciesReference
stoichiometry: 1.0
species: hco3 c

hco3 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: hco3

CDMT01034
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01033
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01032
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

co2 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: co2

DAPE
type: Reaction
kinetic law: CDMT00701
product: CDMT00700
reactant: CDMT00699
fast: false
reversible: false
name: diaminopimelate epimerase

556601
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00704
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00703
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00702
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00700
type: SpeciesReference
stoichiometry: 1.0
species: 26dap 45 M c

26dap 45 M c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 26dap-M

CDMT00699
type: SpeciesReference
stoichiometry: 1.0
species: 26dap 45 LL c

26dap 45 LL c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 26dap-LL

GLUR
type: Reaction
kinetic law: CDMT00629
product: CDMT00628
reactant: CDMT00627
fast: false
reversible: false
name: glutamate racemase

556581
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00632
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00631
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00630
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00628
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

glu 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: glu-L

CDMT00627
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 D c

glu 45 D c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: glu-D

METS
type: Reaction
reversible: false
reactant: CDMT00595
product: CDMT00598
product: CDMT00599
name: methionine synthase
fast: false
kinetic law: CDMT00600
product: CDMT00597
reactant: CDMT00596

CDMT00595
type: SpeciesReference
stoichiometry: 1.0
species: 5mthf c

5mthf c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 5mthf

CDMT00598
type: SpeciesReference
stoichiometry: 1.0
species: met 45 L c

met 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: met-L

CDMT00599
type: SpeciesReference
stoichiometry: 1.0
species: thf c

thf c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: thf

556573
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00603
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00602
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00601
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00597
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00596
type: SpeciesReference
stoichiometry: 1.0
species: hcys 45 L c

hcys 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: hcys-L

cmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: cmp

ade c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ade

DBTS
type: Reaction
reactant: CDMT00732
product: CDMT00735
reversible: false
reactant: CDMT00731
reactant: CDMT00730
fast: false
product: CDMT00736
product: CDMT00734
product: CDMT00733
name: dethiobiotin synthase
kinetic law: CDMT00737

CDMT00732
type: SpeciesReference
stoichiometry: 1.0
species: dann c

dann c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dann

CDMT00735
type: SpeciesReference
stoichiometry: 3.0
species: h c

CDMT00731
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT00730
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00736
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00734
type: SpeciesReference
stoichiometry: 1.0
species: dtbt c

dtbt c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dtbt

CDMT00733
type: SpeciesReference
stoichiometry: 1.0
species: adp c

556609
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00740
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00739
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00738
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

NNATr
type: Reaction
reactant: CDMT01099
kinetic law: CDMT01103
reactant: CDMT01098
name: nicotinate-nucleotide adenylyltransferase
fast: false
product: CDMT01102
reversible: false
reactant: CDMT01100
product: CDMT01101

CDMT01099
type: SpeciesReference
stoichiometry: 1.0
species: h c

556692
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01106
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01105
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01104
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01098
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01102
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01100
type: SpeciesReference
stoichiometry: 1.0
species: nicrnt c

nicrnt c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nicrnt

CDMT01101
type: SpeciesReference
stoichiometry: 1.0
species: dnad c

DTMPK
type: Reaction
kinetic law: CDMT01942
product: CDMT01941
product: CDMT01940
reactant: CDMT01939
reactant: CDMT01938
fast: false
reversible: false
name: dTMP kinase

556839
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01945
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01944
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01943
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01941
type: SpeciesReference
stoichiometry: 1.0
species: dtdp c

dtdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dtdp

CDMT01940
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01939
type: SpeciesReference
stoichiometry: 1.0
species: dtmp c

dtmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dtmp

CDMT01938
type: SpeciesReference
stoichiometry: 1.0
species: atp c

SDPDS
type: Reaction
kinetic law: CDMT01166
product: CDMT01165
product: CDMT01164
reactant: CDMT01163
reactant: CDMT01162
fast: false
reversible: false
name: succinyl-diaminopimelate desuccinylase

556705
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01169
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01168
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01167
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01165
type: SpeciesReference
stoichiometry: 1.0
species: succ c

succ c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: succ

CDMT01164
type: SpeciesReference
stoichiometry: 1.0
species: 26dap 45 LL c

CDMT01163
type: SpeciesReference
stoichiometry: 1.0
species: sl26da c

sl26da c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: sl26da

CDMT01162
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

NDPK6
type: Reaction
kinetic law: CDMT01837
product: CDMT01836
product: CDMT01835
reactant: CDMT01834
reactant: CDMT01833
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:dUDP)

556819
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01840
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01839
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01838
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01836
type: SpeciesReference
stoichiometry: 1.0
species: dutp c

CDMT01835
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01834
type: SpeciesReference
stoichiometry: 1.0
species: dudp c

dudp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dudp

CDMT01833
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CHORS
type: Reaction
kinetic law: CDMT01007
product: CDMT01006
product: CDMT01005
reactant: CDMT01004
fast: false
reversible: false
name: chorismate synthase

556676
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01010
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01009
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01008
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01006
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01005
type: SpeciesReference
stoichiometry: 1.0
species: chor c

CDMT01004
type: SpeciesReference
stoichiometry: 1.0
species: 3psme c

3psme c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3psme

methf c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: methf

q8h2 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: q8h2

UP asp 45 L 40 c 41
type: Reaction
kinetic law: CDMT00269
product: CDMT00268
fast: false
reversible: false
name: asp-L uptake

556488
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00272
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00271
type: LocalParameter
units: mmol per gDW per hr
value: 100.0

CDMT00270
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00268
type: SpeciesReference
stoichiometry: 1.0
species: asp 45 L c

asp 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: asp-L

ACPS1
type: Reaction
name: acyl-carrier protein synthase
product: CDMT00935
product: CDMT00936
reactant: CDMT00933
fast: false
kinetic law: CDMT00938
reactant: CDMT00934
product: CDMT00937
reversible: false

CDMT00935
type: SpeciesReference
stoichiometry: 1.0
species: ACP c

CDMT00936
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00933
type: SpeciesReference
stoichiometry: 1.0
species: apoACP c

apoACP c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: apoACP

556660
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00941
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00940
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00939
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00934
type: SpeciesReference
stoichiometry: 1.0
species: coa c

coa c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: coa

CDMT00937
type: SpeciesReference
stoichiometry: 1.0
species: pap c

pap c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pap

DPCOAK
type: Reaction
reversible: false
name: dephospho-CoA kinase
reactant: CDMT01920
kinetic law: CDMT01925
reactant: CDMT01921
product: CDMT01922
fast: false
product: CDMT01923
product: CDMT01924

CDMT01920
type: SpeciesReference
stoichiometry: 1.0
species: atp c

556836
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01928
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01927
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01926
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01921
type: SpeciesReference
stoichiometry: 1.0
species: dpcoa c

dpcoa c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dpcoa

CDMT01922
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01923
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT01924
type: SpeciesReference
stoichiometry: 1.0
species: h c

OMPDC
type: Reaction
kinetic law: CDMT01537
product: CDMT01536
product: CDMT01535
reactant: CDMT01534
reactant: CDMT01533
fast: false
reversible: false
name: orotidine-5'-phosphate decarboxylase

556771
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01540
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01539
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01538
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01536
type: SpeciesReference
stoichiometry: 1.0
species: ump c

ump c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ump

CDMT01535
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT01534
type: SpeciesReference
stoichiometry: 1.0
species: orot5p c

orot5p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: orot5p

CDMT01533
type: SpeciesReference
stoichiometry: 1.0
species: h c

2dhp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2dhp

GMPR
type: Reaction
reversible: false
product: CDMT00411
reactant: CDMT00406
product: CDMT00409
name: GMP reductase
reactant: CDMT00407
fast: false
kinetic law: CDMT00412
product: CDMT00410
reactant: CDMT00408

CDMT00411
type: SpeciesReference
stoichiometry: 1.0
species: nh4 c

CDMT00406
type: SpeciesReference
stoichiometry: 1.0
species: gmp c

gmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gmp

CDMT00409
type: SpeciesReference
stoichiometry: 1.0
species: imp c

imp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: imp

CDMT00407
type: SpeciesReference
stoichiometry: 2.0
species: h c

556526
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00415
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00414
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00413
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00410
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT00408
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

FBA
type: Reaction
kinetic law: CDMT01529
product: CDMT01528
product: CDMT01527
reactant: CDMT01526
fast: false
reversible: false
name: fructose-bisphosphate aldolase

556769
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01532
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01531
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01530
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01528
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

g3p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: g3p

CDMT01527
type: SpeciesReference
stoichiometry: 1.0
species: dhap c

dhap c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dhap

CDMT01526
type: SpeciesReference
stoichiometry: 1.0
species: fdp c

EF met 45 L 40 c 41
type: Reaction
kinetic law: CDMT00249
reactant: CDMT00247
fast: false
reversible: false
name: Methionine exchange

556482
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00252
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00251
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00250
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00247
type: SpeciesReference
stoichiometry: 1.0
species: met 45 L c

PGM
type: Reaction
kinetic law: CDMT01752
product: CDMT01751
reactant: CDMT01750
fast: false
reversible: false
name: phosphoglycerate mutase

556803
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01755
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01754
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01753
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01751
type: SpeciesReference
stoichiometry: 1.0
species: 2pg c

2pg c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2pg

CDMT01750
type: SpeciesReference
stoichiometry: 1.0
species: 3pg c

3pg c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3pg

o2 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: o2

fmnh2 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fmnh2

TRPS1
type: Reaction
reactant: CDMT01447
name: tryptophan synthase (indoleglycerol phosphate)
reactant: CDMT01446
product: CDMT01449
product: CDMT01450
product: CDMT01448
reversible: false
fast: false
kinetic law: CDMT01451

CDMT01447
type: SpeciesReference
stoichiometry: 1.0
species: ser 45 L c

ser 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ser-L

CDMT01446
type: SpeciesReference
stoichiometry: 1.0
species: 3ig3p c

3ig3p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3ig3p

CDMT01449
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01450
type: SpeciesReference
stoichiometry: 1.0
species: trp 45 L c

trp 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: trp-L

CDMT01448
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

556754
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01454
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01453
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01452
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

OMCDC
type: Reaction
kinetic law: CDMT01059
product: CDMT01058
product: CDMT01057
reactant: CDMT01056
reactant: CDMT01055
fast: false
reversible: false
name: 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation

556685
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01062
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01061
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01060
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01058
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT01057
type: SpeciesReference
stoichiometry: 1.0
species: 4mop c

4mop c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 4mop

CDMT01056
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01055
type: SpeciesReference
stoichiometry: 1.0
species: 3c4mop c

3c4mop c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3c4mop

UP uppg3
type: Reaction
kinetic law: CDMT00402
product: CDMT00401
fast: false
reversible: false
name: uppg3 exchange

556524
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00405
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00404
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00403
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00401
type: SpeciesReference
stoichiometry: 1.0
species: uppg3 c

uppg3 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uppg3

dttp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dttp

PUNP6
type: Reaction
kinetic law: CDMT01475
product: CDMT01474
product: CDMT01473
reactant: CDMT01472
reactant: CDMT01471
fast: false
reversible: false
name: purine-nucleoside phosphorylase (Deoxyinosine)

556759
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01478
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01477
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01476
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01474
type: SpeciesReference
stoichiometry: 1.0
species: hxan c

hxan c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: hxan

CDMT01473
type: SpeciesReference
stoichiometry: 1.0
species: 2dr1p c

2dr1p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2dr1p

CDMT01472
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01471
type: SpeciesReference
stoichiometry: 1.0
species: din c

din c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: din

utp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: utp

DAPDC
type: Reaction
kinetic law: CDMT00462
product: CDMT00461
product: CDMT00460
reactant: CDMT00459
reactant: CDMT00458
fast: false
reversible: false
name: diaminopimelate decarboxylase

556538
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00465
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00464
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00463
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00461
type: SpeciesReference
stoichiometry: 1.0
species: lys 45 L c

lys 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: lys-L

CDMT00460
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT00459
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00458
type: SpeciesReference
stoichiometry: 1.0
species: 26dap 45 M c

ru5p 45 D c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ru5p-D

SHK3Dr
type: Reaction
product: CDMT01218
reactant: CDMT01215
reactant: CDMT01216
product: CDMT01219
fast: false
name: shikimate dehydrogenase
reactant: CDMT01217
reversible: false
kinetic law: CDMT01220

CDMT01218
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT01215
type: SpeciesReference
stoichiometry: 1.0
species: 3dhsk c

3dhsk c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3dhsk

CDMT01216
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01219
type: SpeciesReference
stoichiometry: 1.0
species: skm c

CDMT01217
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

556714
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01223
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01222
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01221
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

spmd c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: spmd

MTAN
type: Reaction
kinetic law: CDMT00637
product: CDMT00636
product: CDMT00635
reactant: CDMT00634
reactant: CDMT00633
fast: false
reversible: false
name: methylthioadenosine nucleosidase

556583
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00640
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00639
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00638
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00636
type: SpeciesReference
stoichiometry: 1.0
species: ade c

CDMT00635
type: SpeciesReference
stoichiometry: 1.0
species: 5mtr c

CDMT00634
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00633
type: SpeciesReference
stoichiometry: 1.0
species: 5mta c

5mta c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 5mta

gthrd c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gthrd

ANPRT
type: Reaction
kinetic law: CDMT01821
product: CDMT01820
product: CDMT01819
reactant: CDMT01818
reactant: CDMT01817
fast: false
reversible: false
name: anthranilate phosphoribosyltransferase

556816
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01824
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01823
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01822
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01820
type: SpeciesReference
stoichiometry: 1.0
species: pran c

pran c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pran

CDMT01819
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01818
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

prpp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: prpp

CDMT01817
type: SpeciesReference
stoichiometry: 1.0
species: anth c

anth c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: anth

acorn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: acorn

acser c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: acser

PUNP1
type: Reaction
kinetic law: CDMT01500
product: CDMT01499
product: CDMT01498
reactant: CDMT01497
reactant: CDMT01496
fast: false
reversible: false
name: purine-nucleoside phosphorylase (Adenosine)

556763
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01503
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01502
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01501
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01499
type: SpeciesReference
stoichiometry: 1.0
species: r1p c

r1p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: r1p

CDMT01498
type: SpeciesReference
stoichiometry: 1.0
species: ade c

CDMT01497
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01496
type: SpeciesReference
stoichiometry: 1.0
species: adn c

adn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: adn

TPI
type: Reaction
kinetic law: CDMT00567
product: CDMT00566
reactant: CDMT00565
fast: false
reversible: false
name: triose-phosphate isomerase

556565
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00570
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00569
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00568
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00566
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

CDMT00565
type: SpeciesReference
stoichiometry: 1.0
species: dhap c

RPI
type: Reaction
kinetic law: CDMT00372
product: CDMT00371
reactant: CDMT00370
fast: false
reversible: false
name: ribose-5-phosphate isomerase

556516
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00375
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00374
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00373
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00371
type: SpeciesReference
stoichiometry: 1.0
species: r5p c

r5p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: r5p

CDMT00370
type: SpeciesReference
stoichiometry: 1.0
species: ru5p 45 D c

2ippm c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2ippm

5apru c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 5apru

accoa c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: accoa

EF lys 45 L 40 c 41
type: Reaction
kinetic law: CDMT01442
reactant: CDMT01440
fast: false
reversible: false
name: Lysine exchange

556753
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01445
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01444
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01443
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01440
type: SpeciesReference
stoichiometry: 1.0
species: lys 45 L c

prlp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: prlp

UPP3MT
type: Reaction
reversible: false
reactant: CDMT00172
kinetic law: CDMT00176
name: uroporphyrinogen methyltransferase
product: CDMT00175
product: CDMT00173
reactant: CDMT00171
product: CDMT00174
fast: false

CDMT00172
type: SpeciesReference
stoichiometry: 1.0
species: uppg3 c

556464
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00179
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00178
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00177
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00175
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00173
type: SpeciesReference
stoichiometry: 2.0
species: ahcys c

ahcys c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ahcys

CDMT00171
type: SpeciesReference
stoichiometry: 2.0
species: amet c

amet c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: amet

CDMT00174
type: SpeciesReference
stoichiometry: 1.0
species: dscl c

dscl c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dscl

UAGPT3
type: Reaction
product: CDMT00907
reversible: false
reactant: CDMT00903
product: CDMT00906
name: UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
product: CDMT00905
fast: false
kinetic law: CDMT00908
reactant: CDMT00904

CDMT00907
type: SpeciesReference
stoichiometry: 1.0
species: udp c

udp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: udp

CDMT00903
type: SpeciesReference
stoichiometry: 1.0
species: uacgam c

uacgam c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uacgam

CDMT00906
type: SpeciesReference
stoichiometry: 1.0
species: uaagmda c

uaagmda c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uaagmda

CDMT00905
type: SpeciesReference
stoichiometry: 1.0
species: h c

556652
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00911
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00910
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00909
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00904
type: SpeciesReference
stoichiometry: 1.0
species: uagmda c

uagmda c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uagmda

SADT2
type: Reaction
reactant: CDMT01322
reactant: CDMT01320
reactant: CDMT01323
kinetic law: CDMT01328
product: CDMT01324
product: CDMT01327
reactant: CDMT01321
reversible: false
fast: false
product: CDMT01325
product: CDMT01326
name: Sulfate adenyltransferase

CDMT01322
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01320
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01323
type: SpeciesReference
stoichiometry: 1.0
species: so4 c

so4 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: so4

556732
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01331
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01330
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01329
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01324
type: SpeciesReference
stoichiometry: 1.0
species: aps c

aps c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: aps

CDMT01327
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01321
type: SpeciesReference
stoichiometry: 1.0
species: gtp c

gtp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gtp

CDMT01325
type: SpeciesReference
stoichiometry: 1.0
species: gdp c

gdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gdp

CDMT01326
type: SpeciesReference
stoichiometry: 1.0
species: pi c

TMDS
type: Reaction
kinetic law: CDMT01369
product: CDMT01368
product: CDMT01367
reactant: CDMT01366
reactant: CDMT01365
fast: false
reversible: false
name: thymidylate synthase

556739
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01372
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01371
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01370
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01368
type: SpeciesReference
stoichiometry: 1.0
species: dtmp c

CDMT01367
type: SpeciesReference
stoichiometry: 1.0
species: dhf c

CDMT01366
type: SpeciesReference
stoichiometry: 1.0
species: mlthf c

mlthf c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: mlthf

CDMT01365
type: SpeciesReference
stoichiometry: 1.0
species: dump c

PUNP5
type: Reaction
kinetic law: CDMT01467
product: CDMT01466
product: CDMT01465
reactant: CDMT01464
reactant: CDMT01463
fast: false
reversible: false
name: purine-nucleoside phosphorylase (Inosine)

556757
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01470
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01469
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01468
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01466
type: SpeciesReference
stoichiometry: 1.0
species: r1p c

CDMT01465
type: SpeciesReference
stoichiometry: 1.0
species: hxan c

CDMT01464
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01463
type: SpeciesReference
stoichiometry: 1.0
species: ins c

ins c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ins

cbasp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: cbasp

ADSL1r
type: Reaction
kinetic law: CDMT02054
product: CDMT02053
product: CDMT02052
reactant: CDMT02051
fast: false
reversible: false
name: adenylsuccinate lyase

556861
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02057
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02056
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02055
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT02053
type: SpeciesReference
stoichiometry: 1.0
species: fum c

CDMT02052
type: SpeciesReference
stoichiometry: 1.0
species: amp c

CDMT02051
type: SpeciesReference
stoichiometry: 1.0
species: dcamp c

dcamp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dcamp

ACODA
type: Reaction
kinetic law: CDMT00584
product: CDMT00583
product: CDMT00582
reactant: CDMT00581
reactant: CDMT00580
fast: false
reversible: false
name: acetylornithine deacetylase

556569
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00587
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00586
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00585
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00583
type: SpeciesReference
stoichiometry: 1.0
species: orn c

orn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: orn

CDMT00582
type: SpeciesReference
stoichiometry: 1.0
species: ac c

ac c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ac

CDMT00581
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00580
type: SpeciesReference
stoichiometry: 1.0
species: acorn c

UP so4 40 c 41
type: Reaction
kinetic law: CDMT00803
product: CDMT00802
fast: false
reversible: false
name: so4 exchange

556625
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00806
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00805
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00804
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00802
type: SpeciesReference
stoichiometry: 1.0
species: so4 c

ile 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ile-L

2p4c2me c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2p4c2me

DPR
type: Reaction
reactant: CDMT01563
reactant: CDMT01562
product: CDMT01566
reactant: CDMT01564
product: CDMT01565
reversible: false
fast: false
name: 2-dehydropantoate 2-reductase
kinetic law: CDMT01567

CDMT01563
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01562
type: SpeciesReference
stoichiometry: 1.0
species: 2dhp c

CDMT01566
type: SpeciesReference
stoichiometry: 1.0
species: pant 45 R c

pant 45 R c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pant-R

CDMT01564
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT01565
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

556777
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01570
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01569
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01568
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

MTHFR2
type: Reaction
reactant: CDMT01125
name: "5,10-methylenetetrahydrofolate reductase (NADH)"
product: CDMT01127
product: CDMT01126
fast: false
kinetic law: CDMT01128
reactant: CDMT01124
reactant: CDMT01123
reversible: false

CDMT01125
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

nadh c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nadh

CDMT01127
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT01126
type: SpeciesReference
stoichiometry: 1.0
species: 5mthf c

556697
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01131
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01130
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01129
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01124
type: SpeciesReference
stoichiometry: 1.0
species: mlthf c

CDMT01123
type: SpeciesReference
stoichiometry: 2.0
species: h c

UP 2obut
type: Reaction
kinetic law: CDMT00929
product: CDMT00928
fast: false
reversible: false
name: 2obut exchange

556658
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00932
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00931
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00930
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00928
type: SpeciesReference
stoichiometry: 1.0
species: 2obut c

2obut c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2obut

ala 45 B c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ala-B

CYSS
type: Reaction
product: CDMT02108
fast: false
product: CDMT02107
reactant: CDMT02106
product: CDMT02109
kinetic law: CDMT02110
reactant: CDMT02105
name: cysteine synthase
reversible: false

CDMT02108
type: SpeciesReference
stoichiometry: 1.0
species: cys 45 L c

cys 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: cys-L

CDMT02107
type: SpeciesReference
stoichiometry: 1.0
species: ac c

CDMT02106
type: SpeciesReference
stoichiometry: 1.0
species: h2s c

h2s c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: h2s

CDMT02109
type: SpeciesReference
stoichiometry: 1.0
species: h c

556872
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02113
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02112
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02111
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02105
type: SpeciesReference
stoichiometry: 1.0
species: acser c

PMDPHT
type: Reaction
kinetic law: CDMT00021
product: CDMT00020
product: CDMT00019
reactant: CDMT00018
reactant: CDMT00017
fast: false
reversible: false
name: pyrimidine phosphatase

556426
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00024
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00023
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00022
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00020
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00019
type: SpeciesReference
stoichiometry: 1.0
species: 4r5au c

CDMT00018
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00017
type: SpeciesReference
stoichiometry: 1.0
species: 5aprbu c

HXPRT
type: Reaction
kinetic law: CDMT01805
product: CDMT01804
product: CDMT01803
reactant: CDMT01802
reactant: CDMT01801
fast: false
reversible: false
name: hypoxanthine phosphoribosyltransferase (Hypoxanthine)

556813
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01808
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01807
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01806
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01804
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01803
type: SpeciesReference
stoichiometry: 1.0
species: imp c

CDMT01802
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

CDMT01801
type: SpeciesReference
stoichiometry: 1.0
species: hxan c

HSK
type: Reaction
reversible: false
product: CDMT00182
kinetic law: CDMT00185
reactant: CDMT00180
fast: false
product: CDMT00184
product: CDMT00183
name: homoserine kinase
reactant: CDMT00181

CDMT00182
type: SpeciesReference
stoichiometry: 1.0
species: adp c

556466
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00188
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00187
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00186
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00180
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00184
type: SpeciesReference
stoichiometry: 1.0
species: phom c

phom c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: phom

CDMT00183
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00181
type: SpeciesReference
stoichiometry: 1.0
species: hom 45 L c

hom 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: hom-L

ugmd c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ugmd

G6PDH2r
type: Reaction
product: CDMT00011
kinetic law: CDMT00013
name: glucose 6-phosphate dehydrogenase
reactant: CDMT00008
fast: false
reversible: false
product: CDMT00010
reactant: CDMT00009
product: CDMT00012

CDMT00011
type: SpeciesReference
stoichiometry: 1.0
species: h c

556424
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00016
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00015
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00014
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00008
type: SpeciesReference
stoichiometry: 1.0
species: g6p c

CDMT00010
type: SpeciesReference
stoichiometry: 1.0
species: 6pgl c

6pgl c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 6pgl

CDMT00009
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT00012
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

PGI
type: Reaction
kinetic law: CDMT00094
product: CDMT00093
reactant: CDMT00092
fast: false
reversible: false
name: glucose-6-phosphate isomerase

556444
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00097
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00096
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00095
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00093
type: SpeciesReference
stoichiometry: 1.0
species: f6p c

CDMT00092
type: SpeciesReference
stoichiometry: 1.0
species: g6p c

thdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: thdp

2me4p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2me4p

25aics c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 25aics

PUNP2
type: Reaction
kinetic law: CDMT01508
product: CDMT01507
product: CDMT01506
reactant: CDMT01505
reactant: CDMT01504
fast: false
reversible: false
name: purine-nucleoside phosphorylase (Deoxyadenosine)

556765
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01511
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01510
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01509
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01507
type: SpeciesReference
stoichiometry: 1.0
species: ade c

CDMT01506
type: SpeciesReference
stoichiometry: 1.0
species: 2dr1p c

CDMT01505
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01504
type: SpeciesReference
stoichiometry: 1.0
species: dad 45 2 c

dad 45 2 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dad-2

23dhmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 23dhmp

ASPK
type: Reaction
kinetic law: CDMT01228
product: CDMT01227
product: CDMT01226
reactant: CDMT01225
reactant: CDMT01224
fast: false
reversible: false
name: aspartate kinase

556715
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01231
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01230
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01229
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01227
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01226
type: SpeciesReference
stoichiometry: 1.0
species: 4pasp c

CDMT01225
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01224
type: SpeciesReference
stoichiometry: 1.0
species: asp 45 L c

UP nac
type: Reaction
kinetic law: CDMT01075
product: CDMT01074
fast: false
reversible: false
name: nac exchange

556688
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01078
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01077
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT01076
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01074
type: SpeciesReference
stoichiometry: 1.0
species: nac c

nac c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: nac

UP pheme
type: Reaction
kinetic law: CDMT00809
product: CDMT00808
fast: false
reversible: false
name: pheme exchange

556627
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00812
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00811
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00810
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00808
type: SpeciesReference
stoichiometry: 1.0
species: pheme c

pheme c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pheme

glyc c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: glyc

glucys c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: glucys

udcpdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: udcpdp

MECDPS
type: Reaction
kinetic law: CDMT00167
product: CDMT00166
product: CDMT00165
reactant: CDMT00164
fast: false
reversible: false
name: "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase"

556462
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00170
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00169
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00168
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00166
type: SpeciesReference
stoichiometry: 1.0
species: cmp c

CDMT00165
type: SpeciesReference
stoichiometry: 1.0
species: 2mecdp c

2mecdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2mecdp

CDMT00164
type: SpeciesReference
stoichiometry: 1.0
species: 2p4c2me c

PRPPS
type: Reaction
product: CDMT01555
reactant: CDMT01554
reversible: false
product: CDMT01557
reactant: CDMT01553
fast: false
kinetic law: CDMT01558
product: CDMT01556
name: phosphoribosylpyrophosphate synthetase

CDMT01555
type: SpeciesReference
stoichiometry: 1.0
species: amp c

CDMT01554
type: SpeciesReference
stoichiometry: 1.0
species: r5p c

CDMT01557
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

CDMT01553
type: SpeciesReference
stoichiometry: 1.0
species: atp c

556775
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01561
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01560
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01559
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01556
type: SpeciesReference
stoichiometry: 1.0
species: h c

DMPPS
type: Reaction
product: CDMT00989
reversible: false
product: CDMT00988
name: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)
reactant: CDMT00985
kinetic law: CDMT00991
fast: false
reactant: CDMT00986
product: CDMT00990
reactant: CDMT00987

CDMT00989
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00988
type: SpeciesReference
stoichiometry: 1.0
species: dmpp c

dmpp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dmpp

CDMT00985
type: SpeciesReference
stoichiometry: 1.0
species: h c

556673
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00994
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00993
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00992
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00986
type: SpeciesReference
stoichiometry: 1.0
species: h2mb4p c

h2mb4p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: h2mb4p

CDMT00990
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT00987
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

NDPK1
type: Reaction
kinetic law: CDMT01829
product: CDMT01828
product: CDMT01827
reactant: CDMT01826
reactant: CDMT01825
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:GDP)

556818
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01832
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01831
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01830
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01828
type: SpeciesReference
stoichiometry: 1.0
species: gtp c

CDMT01827
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01826
type: SpeciesReference
stoichiometry: 1.0
species: gdp c

CDMT01825
type: SpeciesReference
stoichiometry: 1.0
species: atp c

adphep 45 D 44 D c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: adphep-D,D

substance
type: SBMLUnitsDef
unit: CDMT02138
name: substance

CDMT02138
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: MOLE

GLUCYS
type: Reaction
fast: false
product: CDMT01175
product: CDMT01174
reactant: CDMT01172
reversible: false
product: CDMT01173
name: gamma-glutamylcysteine synthetase
reactant: CDMT01171
product: CDMT01176
kinetic law: CDMT01177
reactant: CDMT01170

CDMT01175
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01174
type: SpeciesReference
stoichiometry: 1.0
species: glucys c

CDMT01172
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT01173
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01171
type: SpeciesReference
stoichiometry: 1.0
species: cys 45 L c

CDMT01176
type: SpeciesReference
stoichiometry: 1.0
species: pi c

556706
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01180
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01179
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01178
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01170
type: SpeciesReference
stoichiometry: 1.0
species: atp c

EF amob 40 c 41
type: Reaction
kinetic law: CDMT01797
reactant: CDMT01795
fast: false
reversible: false
name: amob efflux

556812
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01800
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01799
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01798
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01795
type: SpeciesReference
stoichiometry: 1.0
species: amob c

amob c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: amob

DXPRIi
type: Reaction
product: CDMT01386
reversible: false
name: 1-deoxy-D-xylulose reductoisomerase
product: CDMT01385
reactant: CDMT01384
reactant: CDMT01382
fast: false
reactant: CDMT01383
kinetic law: CDMT01387

CDMT01386
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT01385
type: SpeciesReference
stoichiometry: 1.0
species: 2me4p c

CDMT01384
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT01382
type: SpeciesReference
stoichiometry: 1.0
species: dxyl5p c

dxyl5p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dxyl5p

CDMT01383
type: SpeciesReference
stoichiometry: 1.0
species: h c

556742
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01390
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01389
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01388
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

AGPR
type: Reaction
reactant: CDMT01063
reactant: CDMT01065
reactant: CDMT01064
reversible: false
product: CDMT01068
fast: false
product: CDMT01066
product: CDMT01067
name: N-acetyl-g-glutamyl-phosphate reductase
kinetic law: CDMT01069

CDMT01063
type: SpeciesReference
stoichiometry: 1.0
species: acg5p c

acg5p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: acg5p

CDMT01065
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT01064
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01068
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01066
type: SpeciesReference
stoichiometry: 1.0
species: acg5sa c

acg5sa c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: acg5sa

CDMT01067
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

556686
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01072
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01071
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01070
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

length
type: SBMLUnitsDef
unit: CDMT02141
name: length

CDMT02141
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: METRE

APRAUR
type: Reaction
product: CDMT00724
reactant: CDMT00722
kinetic law: CDMT00726
product: CDMT00725
fast: false
reversible: false
reactant: CDMT00723
name: 5-amino-6-(5-phosphoribosylamino)uracil reductase
reactant: CDMT00721

CDMT00724
type: SpeciesReference
stoichiometry: 1.0
species: 5aprbu c

CDMT00722
type: SpeciesReference
stoichiometry: 1.0
species: h c

556607
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00729
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00728
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00727
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00725
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT00723
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00721
type: SpeciesReference
stoichiometry: 1.0
species: 5apru c

fad c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fad

EF for 40 c 41
type: Reaction
kinetic law: CDMT00160
reactant: CDMT00158
fast: false
reversible: false
name: for efflux

556460
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00163
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00162
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00161
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00158
type: SpeciesReference
stoichiometry: 1.0
species: for c

for c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: for

default
type: Compartment
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0

UP gsn 40 c 41
type: Reaction
kinetic law: CDMT02039
product: CDMT02038
fast: false
reversible: false
name: gsn exchange

556858
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02042
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02041
type: LocalParameter
units: mmol per gDW per hr
value: 100.0

CDMT02040
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02038
type: SpeciesReference
stoichiometry: 1.0
species: gsn c

gsn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gsn

DHAD2
type: Reaction
kinetic law: CDMT01436
product: CDMT01435
product: CDMT01434
reactant: CDMT01433
fast: false
reversible: false
name: "Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)"

556751
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01439
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01438
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01437
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01435
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01434
type: SpeciesReference
stoichiometry: 1.0
species: 3mop c

3mop c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3mop

CDMT01433
type: SpeciesReference
stoichiometry: 1.0
species: 23dhmp c

UDCPDP
type: Reaction
reactant: CDMT01373
product: CDMT01375
reactant: CDMT01374
product: CDMT01376
fast: false
reversible: false
name: undecaprenyl-diphosphatase
kinetic law: CDMT01378
product: CDMT01377

CDMT01373
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01375
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01374
type: SpeciesReference
stoichiometry: 1.0
species: udcpdp c

CDMT01376
type: SpeciesReference
stoichiometry: 1.0
species: pi c

556741
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01381
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01380
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01379
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01377
type: SpeciesReference
stoichiometry: 1.0
species: udcpp c

udcpp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: udcpp

acglu c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: acglu

btn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: btn

SERAT
type: Reaction
kinetic law: CDMT00617
product: CDMT00616
product: CDMT00615
reactant: CDMT00614
reactant: CDMT00613
fast: false
reversible: false
name: serine O-acetyltransferase

556577
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00620
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00619
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00618
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00616
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT00615
type: SpeciesReference
stoichiometry: 1.0
species: acser c

CDMT00614
type: SpeciesReference
stoichiometry: 1.0
species: ser 45 L c

CDMT00613
type: SpeciesReference
stoichiometry: 1.0
species: accoa c

DHORD2
type: Reaction
kinetic law: CDMT01910
product: CDMT01909
product: CDMT01908
reactant: CDMT01907
reactant: CDMT01906
fast: false
reversible: false
name: dihydoorotic acid dehydrogenase (quinone8)

556833
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01913
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01912
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01911
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01909
type: SpeciesReference
stoichiometry: 1.0
species: q8h2 c

CDMT01908
type: SpeciesReference
stoichiometry: 1.0
species: orot c

orot c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: orot

CDMT01907
type: SpeciesReference
stoichiometry: 1.0
species: q8 c

q8 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: q8

CDMT01906
type: SpeciesReference
stoichiometry: 1.0
species: dhor 45 S c

dhor 45 S c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dhor-S

ptrc c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ptrc

DF o2 40 c 41
type: Reaction
kinetic law: CDMT01393
product: CDMT01392
fast: false
reversible: false
name: o2 exchange

556744
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01396
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01395
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01394
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01392
type: SpeciesReference
stoichiometry: 1.0
species: o2 c

NADK
type: Reaction
product: CDMT01048
name: NAD kinase
reactant: CDMT01047
product: CDMT01049
reversible: false
fast: false
kinetic law: CDMT01051
product: CDMT01050
reactant: CDMT01046

CDMT01048
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01047
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT01049
type: SpeciesReference
stoichiometry: 1.0
species: h c

556683
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01054
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01053
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01052
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01050
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT01046
type: SpeciesReference
stoichiometry: 1.0
species: atp c

25drapp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 25drapp

FMNAT
type: Reaction
product: CDMT00796
fast: false
reactant: CDMT00792
reactant: CDMT00794
kinetic law: CDMT00797
reactant: CDMT00793
product: CDMT00795
name: FMN adenylyltransferase
reversible: false

CDMT00796
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00792
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00794
type: SpeciesReference
stoichiometry: 1.0
species: h c

556623
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00800
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00799
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00798
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00793
type: SpeciesReference
stoichiometry: 1.0
species: fmn c

fmn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fmn

CDMT00795
type: SpeciesReference
stoichiometry: 1.0
species: fad c

acgam1p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: acgam1p

hemeO c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: hemeO

THRS
type: Reaction
kinetic law: CDMT00291
product: CDMT00290
product: CDMT00289
reactant: CDMT00288
reactant: CDMT00287
fast: false
reversible: false
name: threonine synthase

556494
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00294
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00293
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00292
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00290
type: SpeciesReference
stoichiometry: 1.0
species: thr 45 L c

thr 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: thr-L

CDMT00289
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00288
type: SpeciesReference
stoichiometry: 1.0
species: phom c

CDMT00287
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

M1PD
type: Reaction
reactant: CDMT02058
product: CDMT02062
product: CDMT02060
product: CDMT02061
name: mannitol-1-phosphate 5-dehydrogenase
reactant: CDMT02059
kinetic law: CDMT02063
fast: false
reversible: false

CDMT02058
type: SpeciesReference
stoichiometry: 1.0
species: mnl1p c

mnl1p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: mnl1p

CDMT02062
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

CDMT02060
type: SpeciesReference
stoichiometry: 1.0
species: f6p c

CDMT02061
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT02059
type: SpeciesReference
stoichiometry: 1.0
species: nad c

556862
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02066
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02065
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02064
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

GAPD
type: Reaction
reversible: false
product: CDMT00327
kinetic law: CDMT00328
reactant: CDMT00324
product: CDMT00326
fast: false
reactant: CDMT00322
name: glyceraldehyde-3-phosphate dehydrogenase
reactant: CDMT00323
product: CDMT00325

CDMT00327
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

556504
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00331
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00330
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00329
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00324
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00326
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00322
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

CDMT00323
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT00325
type: SpeciesReference
stoichiometry: 1.0
species: 13dpg c

13dpg c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 13dpg

BTS2
type: Reaction
reactant: CDMT01981
reversible: false
product: CDMT01983
product: CDMT01985
name: biotin synthase (ala-L producing)
fast: false
product: CDMT01984
reactant: CDMT01982
kinetic law: CDMT01986

CDMT01981
type: SpeciesReference
stoichiometry: 1.0
species: cys 45 L c

CDMT01983
type: SpeciesReference
stoichiometry: 1.0
species: ala 45 L c

ala 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ala-L

CDMT01985
type: SpeciesReference
stoichiometry: 2.0
species: h c

CDMT01984
type: SpeciesReference
stoichiometry: 1.0
species: btn c

CDMT01982
type: SpeciesReference
stoichiometry: 1.0
species: dtbt c

556847
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01989
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01988
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01987
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

2cpr5p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2cpr5p

UP glu 45 L 40 c 41
type: Reaction
kinetic law: CDMT00501
product: CDMT00500
fast: false
reversible: false
name: glu-L exchange

556548
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00504
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00503
type: LocalParameter
units: mmol per gDW per hr
value: 100.0

CDMT00502
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00500
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CLPNS EC
type: Reaction
kinetic law: CDMT02076
product: CDMT02075
product: CDMT02074
reactant: CDMT02073
fast: false
reversible: false
name: Cardiolipin Synthase (E.coli)

556865
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02079
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02078
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02077
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT02075
type: SpeciesReference
stoichiometry: 1.0
species: glyc c

CDMT02074
type: SpeciesReference
stoichiometry: 1.0
species: clpn EC c

clpn EC c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: clpn_EC

CDMT02073
type: SpeciesReference
stoichiometry: 2.0
species: pg EC c

UP hcys 45 L 40 c 41
type: Reaction
kinetic law: CDMT01884
product: CDMT01883
fast: false
reversible: false
name: hcys-L exchange

556828
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01887
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01886
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT01885
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01883
type: SpeciesReference
stoichiometry: 1.0
species: hcys 45 L c

AICART
type: Reaction
kinetic law: CDMT00154
product: CDMT00153
product: CDMT00152
reactant: CDMT00151
reactant: CDMT00150
fast: false
reversible: false
name: phosphoribosylaminoimidazolecarboxamide formyltransferase

556458
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00157
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00156
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00155
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00153
type: SpeciesReference
stoichiometry: 1.0
species: thf c

CDMT00152
type: SpeciesReference
stoichiometry: 1.0
species: fprica c

fprica c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fprica

CDMT00151
type: SpeciesReference
stoichiometry: 1.0
species: aicar c

aicar c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: aicar

CDMT00150
type: SpeciesReference
stoichiometry: 1.0
species: 10fthf c

10fthf c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 10fthf

GUAPRT
type: Reaction
kinetic law: CDMT00061
product: CDMT00060
product: CDMT00059
reactant: CDMT00058
reactant: CDMT00057
fast: false
reversible: false
name: guanine phosphoribosyltransferase

556436
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00064
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00063
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00062
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00060
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00059
type: SpeciesReference
stoichiometry: 1.0
species: gmp c

CDMT00058
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

CDMT00057
type: SpeciesReference
stoichiometry: 1.0
species: gua c

gua c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gua

PGK
type: Reaction
kinetic law: CDMT01760
product: CDMT01759
product: CDMT01758
reactant: CDMT01757
reactant: CDMT01756
fast: false
reversible: false
name: phosphoglycerate kinase

556804
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01763
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01762
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01761
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01759
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01758
type: SpeciesReference
stoichiometry: 1.0
species: 3pg c

CDMT01757
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01756
type: SpeciesReference
stoichiometry: 1.0
species: 13dpg c

TALA
type: Reaction
kinetic law: CDMT01250
product: CDMT01249
product: CDMT01248
reactant: CDMT01247
reactant: CDMT01246
fast: false
reversible: false
name: transaldolase

556720
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01253
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01252
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01251
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01249
type: SpeciesReference
stoichiometry: 1.0
species: f6p c

CDMT01248
type: SpeciesReference
stoichiometry: 1.0
species: e4p c

e4p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: e4p

CDMT01247
type: SpeciesReference
stoichiometry: 1.0
species: s7p c

s7p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: s7p

CDMT01246
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

EX nh4 40 c 41
type: Reaction
kinetic law: CDMT00378
product: CDMT00377
fast: false
reversible: false
name: nh4 exchange

556518
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00381
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00380
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00379
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00377
type: SpeciesReference
stoichiometry: 1.0
species: nh4 c

PTPATi
type: Reaction
reactant: CDMT00354
kinetic law: CDMT00358
product: CDMT00356
reactant: CDMT00353
reversible: false
product: CDMT00357
name: pantetheine-phosphate adenylyltransferase
reactant: CDMT00355
fast: false

CDMT00354
type: SpeciesReference
stoichiometry: 1.0
species: h c

556512
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00361
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00360
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00359
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00356
type: SpeciesReference
stoichiometry: 1.0
species: dpcoa c

CDMT00353
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00357
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00355
type: SpeciesReference
stoichiometry: 1.0
species: pan4p c

pan4p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pan4p

EX dhpt 40 c 41
type: Reaction
kinetic law: CDMT02069
product: CDMT02068
fast: false
reversible: false
name: dhpt exchange

556864
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02072
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02071
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02070
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT02068
type: SpeciesReference
stoichiometry: 1.0
species: dhpt c

dhpt c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dhpt

datp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: datp

TRDR
type: Reaction
reversible: false
reactant: CDMT00860
reactant: CDMT00858
fast: false
reactant: CDMT00859
product: CDMT00861
name: thioredoxin reductase (NADPH)
kinetic law: CDMT00863
product: CDMT00862

CDMT00860
type: SpeciesReference
stoichiometry: 1.0
species: trdox c

CDMT00858
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00859
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00861
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

556641
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00866
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00865
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00864
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00862
type: SpeciesReference
stoichiometry: 1.0
species: trdrd c

ATPPRT
type: Reaction
kinetic law: CDMT00366
product: CDMT00365
product: CDMT00364
reactant: CDMT00363
reactant: CDMT00362
fast: false
reversible: false
name: ATP phosphoribosyltransferase

556514
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00369
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00368
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00367
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00365
type: SpeciesReference
stoichiometry: 1.0
species: prbatp c

prbatp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: prbatp

CDMT00364
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00363
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

CDMT00362
type: SpeciesReference
stoichiometry: 1.0
species: atp c

prbamp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: prbamp

4c2me c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 4c2me

EF thr 45 L 40 c 41
type: Reaction
kinetic law: CDMT00838
reactant: CDMT00836
fast: false
reversible: false
name: Threonine exchange

556635
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00841
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00840
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00839
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00836
type: SpeciesReference
stoichiometry: 1.0
species: thr 45 L c

KARA1
type: Reaction
reactant: CDMT00760
kinetic law: CDMT00764
fast: false
reactant: CDMT00761
reversible: false
product: CDMT00762
name: "ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)"
reactant: CDMT00759
product: CDMT00763

CDMT00760
type: SpeciesReference
stoichiometry: 1.0
species: h c

556615
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00767
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00766
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00765
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00761
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00762
type: SpeciesReference
stoichiometry: 1.0
species: 23dhmb c

CDMT00759
type: SpeciesReference
stoichiometry: 1.0
species: alac 45 S c

alac 45 S c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: alac-S

CDMT00763
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

TKT1
type: Reaction
kinetic law: CDMT00470
product: CDMT00469
product: CDMT00468
reactant: CDMT00467
reactant: CDMT00466
fast: false
reversible: false
name: transketolase

556540
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00473
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00472
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00471
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00469
type: SpeciesReference
stoichiometry: 1.0
species: s7p c

CDMT00468
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

CDMT00467
type: SpeciesReference
stoichiometry: 1.0
species: xu5p 45 D c

xu5p 45 D c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: xu5p-D

CDMT00466
type: SpeciesReference
stoichiometry: 1.0
species: r5p c

val 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: val-L

MTHFC
type: Reaction
kinetic law: CDMT01411
product: CDMT01410
product: CDMT01409
reactant: CDMT01408
reactant: CDMT01407
fast: false
reversible: false
name: methenyltetrahydrofolate cyclohydrolase

556747
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01414
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01413
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01412
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01410
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01409
type: SpeciesReference
stoichiometry: 1.0
species: 10fthf c

CDMT01408
type: SpeciesReference
stoichiometry: 1.0
species: methf c

CDMT01407
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

UP ptrc
type: Reaction
kinetic law: CDMT00923
product: CDMT00922
fast: false
reversible: false
name: ptrc exchange

556656
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00926
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00925
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00924
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00922
type: SpeciesReference
stoichiometry: 1.0
species: ptrc c

PUNP3
type: Reaction
kinetic law: CDMT01516
product: CDMT01515
product: CDMT01514
reactant: CDMT01513
reactant: CDMT01512
fast: false
reversible: false
name: purine-nucleoside phosphorylase (Guanosine)

556766
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01519
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01518
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01517
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01515
type: SpeciesReference
stoichiometry: 1.0
species: r1p c

CDMT01514
type: SpeciesReference
stoichiometry: 1.0
species: gua c

CDMT01513
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01512
type: SpeciesReference
stoichiometry: 1.0
species: gsn c

PRAIi
type: Reaction
kinetic law: CDMT00078
product: CDMT00077
reactant: CDMT00076
fast: false
reversible: false
name: phosphoribosylanthranilate isomerase (irreversible)

556440
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00081
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00080
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00079
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00077
type: SpeciesReference
stoichiometry: 1.0
species: 2cpr5p c

CDMT00076
type: SpeciesReference
stoichiometry: 1.0
species: pran c

MECDPDH
type: Reaction
kinetic law: CDMT00193
product: CDMT00192
product: CDMT00191
reactant: CDMT00190
reactant: CDMT00189
fast: false
reversible: false
name: "2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase"

556468
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00196
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00195
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00194
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00192
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00191
type: SpeciesReference
stoichiometry: 1.0
species: h2mb4p c

CDMT00190
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00189
type: SpeciesReference
stoichiometry: 1.0
species: 2mecdp c

EF arg 45 L 40 c 41
type: Reaction
kinetic law: CDMT00832
reactant: CDMT00830
fast: false
reversible: false
name: arg-L efflux

556633
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00835
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00834
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00833
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00830
type: SpeciesReference
stoichiometry: 1.0
species: arg 45 L c

arg 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: arg-L

area
type: SBMLUnitsDef
unit: CDMT02140
name: area

CDMT02140
type: SBMLUnit
exponent: 2.0
scale: 0
multipler: 1.0
kind: METRE

EF gly 40 c 41
type: Reaction
kinetic law: CDMT00127
reactant: CDMT00125
fast: false
reversible: false
name: gly exchange

556452
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00130
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00129
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00128
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00125
type: SpeciesReference
stoichiometry: 1.0
species: gly c

SPMS
type: Reaction
name: spermidine synthase
fast: false
product: CDMT00815
reversible: false
product: CDMT00816
kinetic law: CDMT00818
reactant: CDMT00813
product: CDMT00817
reactant: CDMT00814

CDMT00815
type: SpeciesReference
stoichiometry: 1.0
species: 5mta c

CDMT00816
type: SpeciesReference
stoichiometry: 1.0
species: h c

556629
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00821
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00820
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00819
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00813
type: SpeciesReference
stoichiometry: 1.0
species: ametam c

ametam c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ametam

CDMT00817
type: SpeciesReference
stoichiometry: 1.0
species: spmd c

CDMT00814
type: SpeciesReference
stoichiometry: 1.0
species: ptrc c

TMPK
type: Reaction
kinetic law: CDMT00959
product: CDMT00958
product: CDMT00957
reactant: CDMT00956
reactant: CDMT00955
fast: false
reversible: false
name: thiamine-phosphate kinase

556666
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00962
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00961
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00960
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00958
type: SpeciesReference
stoichiometry: 1.0
species: thmpp c

CDMT00957
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00956
type: SpeciesReference
stoichiometry: 1.0
species: thmmp c

thmmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: thmmp

CDMT00955
type: SpeciesReference
stoichiometry: 1.0
species: atp c

DDPA
type: Reaction
kinetic law: CDMT00115
name: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase
reversible: false
fast: false
reactant: CDMT00112
reactant: CDMT00111
product: CDMT00113
product: CDMT00114
reactant: CDMT00110

556448
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00118
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00117
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00116
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00112
type: SpeciesReference
stoichiometry: 1.0
species: pep c

CDMT00111
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00113
type: SpeciesReference
stoichiometry: 1.0
species: 2dda7p c

2dda7p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2dda7p

CDMT00114
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00110
type: SpeciesReference
stoichiometry: 1.0
species: e4p c

IGPDH
type: Reaction
kinetic law: CDMT01969
product: CDMT01968
product: CDMT01967
reactant: CDMT01966
fast: false
reversible: false
name: imidazoleglycerol-phosphate dehydratase

556844
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01972
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01971
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01970
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01968
type: SpeciesReference
stoichiometry: 1.0
species: imacp c

CDMT01967
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01966
type: SpeciesReference
stoichiometry: 1.0
species: eig3p c

eig3p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: eig3p

UAGDP
type: Reaction
reactant: CDMT01602
product: CDMT01604
reactant: CDMT01601
reversible: false
reactant: CDMT01603
kinetic law: CDMT01606
fast: false
product: CDMT01605
name: UDP-N-acetylglucosamine diphosphorylase

CDMT01602
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01604
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01601
type: SpeciesReference
stoichiometry: 1.0
species: acgam1p c

CDMT01603
type: SpeciesReference
stoichiometry: 1.0
species: utp c

556783
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01609
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01608
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01607
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01605
type: SpeciesReference
stoichiometry: 1.0
species: uacgam c

frdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: frdp

NDPK2
type: Reaction
kinetic law: CDMT01813
product: CDMT01812
product: CDMT01811
reactant: CDMT01810
reactant: CDMT01809
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:UDP)

556815
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01816
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01815
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01814
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01812
type: SpeciesReference
stoichiometry: 1.0
species: utp c

CDMT01811
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01810
type: SpeciesReference
stoichiometry: 1.0
species: udp c

CDMT01809
type: SpeciesReference
stoichiometry: 1.0
species: atp c

dctp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dctp

gmhep17bp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gmhep17bp

UP ala 45 L 40 c 41
type: Reaction
kinetic law: CDMT01773
product: CDMT01772
fast: false
reversible: false
name: Alanine exchange

556807
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01776
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01775
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT01774
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01772
type: SpeciesReference
stoichiometry: 1.0
species: ala 45 L c

PTAr
type: Reaction
kinetic law: CDMT01236
product: CDMT01235
product: CDMT01234
reactant: CDMT01233
reactant: CDMT01232
fast: false
reversible: false
name: phosphotransacetylase

556717
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01239
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01238
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01237
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01235
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT01234
type: SpeciesReference
stoichiometry: 1.0
species: actp c

actp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: actp

CDMT01233
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01232
type: SpeciesReference
stoichiometry: 1.0
species: accoa c

KARA2
type: Reaction
kinetic law: CDMT00773
name: ketol-acid reductoisomerase (2-Acetolactate)
product: CDMT00772
fast: false
reactant: CDMT00770
reactant: CDMT00768
product: CDMT00771
reactant: CDMT00769
reversible: false

556617
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00776
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00775
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00774
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00772
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT00770
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00768
type: SpeciesReference
stoichiometry: 1.0
species: 2ahbut c

2ahbut c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 2ahbut

CDMT00771
type: SpeciesReference
stoichiometry: 1.0
species: 23dhmp c

CDMT00769
type: SpeciesReference
stoichiometry: 1.0
species: h c

EF cmp 40 c 41
type: Reaction
kinetic law: CDMT00440
reactant: CDMT00438
fast: false
reversible: false
name: cmp exchange

556532
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00443
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00442
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00441
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00438
type: SpeciesReference
stoichiometry: 1.0
species: cmp c

PGAMT
type: Reaction
kinetic law: CDMT01278
product: CDMT01277
reactant: CDMT01276
fast: false
reversible: false
name: phosphoglucosamine mutase

556724
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01281
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01280
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01279
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01277
type: SpeciesReference
stoichiometry: 1.0
species: gam6p c

gam6p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gam6p

CDMT01276
type: SpeciesReference
stoichiometry: 1.0
species: gam1p c

gam1p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gam1p

HEMEOS
type: Reaction
reactant: CDMT01704
reactant: CDMT01705
fast: false
product: CDMT01708
product: CDMT01707
reversible: false
kinetic law: CDMT01709
name: Heme O synthase
reactant: CDMT01706

CDMT01704
type: SpeciesReference
stoichiometry: 1.0
species: frdp c

CDMT01705
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01708
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01707
type: SpeciesReference
stoichiometry: 1.0
species: hemeO c

556793
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01712
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01711
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01710
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01706
type: SpeciesReference
stoichiometry: 1.0
species: pheme c

GTPCII2
type: Reaction
reactant: CDMT01288
name: GTP cyclohydrolase II (25drapp)
product: CDMT01290
product: CDMT01292
kinetic law: CDMT01294
reactant: CDMT01289
reversible: false
product: CDMT01291
product: CDMT01293
fast: false

CDMT01288
type: SpeciesReference
stoichiometry: 1.0
species: gtp c

CDMT01290
type: SpeciesReference
stoichiometry: 1.0
species: 25drapp c

CDMT01292
type: SpeciesReference
stoichiometry: 2.0
species: h c

556727
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01297
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01296
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01295
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01289
type: SpeciesReference
stoichiometry: 3.0
species: h2o c

CDMT01291
type: SpeciesReference
stoichiometry: 1.0
species: for c

CDMT01293
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

ribflv c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ribflv

UP ser 45 L 40 c 41
type: Reaction
kinetic law: CDMT00869
product: CDMT00868
fast: false
reversible: false
name: ser-L exchange

556643
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00872
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00871
type: LocalParameter
units: mmol per gDW per hr
value: 10.0

CDMT00870
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00868
type: SpeciesReference
stoichiometry: 1.0
species: ser 45 L c

scl c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: scl

UP fe2
type: Reaction
kinetic law: CDMT00623
product: CDMT00622
fast: false
reversible: false
name: fe2 exchange

556579
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00626
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00625
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00624
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00622
type: SpeciesReference
stoichiometry: 1.0
species: fe2 c

fe2 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: fe2

GMHEPAT
type: Reaction
reactant: CDMT01890
reactant: CDMT01889
kinetic law: CDMT01893
product: CDMT01892
reactant: CDMT01888
product: CDMT01891
name: D-glycero-D-manno-hepose 1-phosphate adenyltransferase
reversible: false
fast: false

CDMT01890
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01889
type: SpeciesReference
stoichiometry: 1.0
species: gmhep1p c

gmhep1p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gmhep1p

556830
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01896
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01895
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01894
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01892
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01888
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01891
type: SpeciesReference
stoichiometry: 1.0
species: adphep 45 D 44 D c

UAMAGS
type: Reaction
reactant: CDMT00067
product: CDMT00069
reactant: CDMT00065
kinetic law: CDMT00072
name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
reactant: CDMT00066
product: CDMT00068
reversible: false
product: CDMT00071
fast: false
product: CDMT00070

CDMT00067
type: SpeciesReference
stoichiometry: 1.0
species: uama c

uama c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uama

CDMT00069
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00065
type: SpeciesReference
stoichiometry: 1.0
species: atp c

556438
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00075
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00074
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00073
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00066
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 D c

CDMT00068
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00071
type: SpeciesReference
stoichiometry: 1.0
species: uamag c

uamag c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uamag

CDMT00070
type: SpeciesReference
stoichiometry: 1.0
species: pi c

GK1
type: Reaction
kinetic law: CDMT00709
product: CDMT00708
product: CDMT00707
reactant: CDMT00706
reactant: CDMT00705
fast: false
reversible: false
name: guanylate kinase (GMP:ATP)

556603
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00712
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00711
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00710
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00708
type: SpeciesReference
stoichiometry: 1.0
species: gdp c

CDMT00707
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00706
type: SpeciesReference
stoichiometry: 1.0
species: gmp c

CDMT00705
type: SpeciesReference
stoichiometry: 1.0
species: atp c

uamr c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uamr

TEST AKGDH
type: Reaction
reactant: CDMT00133
product: CDMT00136
fast: false
kinetic law: CDMT00137
product: CDMT00134
reactant: CDMT00132
name: 2-Oxogluterate dehydrogenase
product: CDMT00135
reversible: false
reactant: CDMT00131

CDMT00133
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT00136
type: SpeciesReference
stoichiometry: 1.0
species: succoa c

succoa c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: succoa

556454
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00140
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00139
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00138
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00134
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT00132
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT00135
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

CDMT00131
type: SpeciesReference
stoichiometry: 1.0
species: akg c

IPPMIa
type: Reaction
kinetic law: CDMT00945
product: CDMT00944
reactant: CDMT00943
reactant: CDMT00942
fast: false
reversible: false
name: 3-isopropylmalate dehydratase

556662
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00948
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00947
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00946
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00944
type: SpeciesReference
stoichiometry: 1.0
species: 3c2hmp c

3c2hmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3c2hmp

CDMT00943
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00942
type: SpeciesReference
stoichiometry: 1.0
species: 2ippm c

ADSL2r
type: Reaction
kinetic law: CDMT00854
product: CDMT00853
product: CDMT00852
reactant: CDMT00851
fast: false
reversible: false
name: adenylosuccinate lyase

556639
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00857
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00856
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00855
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00853
type: SpeciesReference
stoichiometry: 1.0
species: fum c

CDMT00852
type: SpeciesReference
stoichiometry: 1.0
species: aicar c

CDMT00851
type: SpeciesReference
stoichiometry: 1.0
species: 25aics c

DF h2o 40 c 41
type: Reaction
kinetic law: CDMT01140
product: CDMT01139
fast: false
reversible: false
name: h2o exchange

556700
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01143
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01142
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01141
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01139
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

PRMICI
type: Reaction
kinetic law: CDMT00689
product: CDMT00688
reactant: CDMT00687
fast: false
reversible: false
name: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase

556597
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00692
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00691
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00690
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00688
type: SpeciesReference
stoichiometry: 1.0
species: prlp c

CDMT00687
type: SpeciesReference
stoichiometry: 1.0
species: prfp c

prfp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: prfp

EF fum 40 c 41
type: Reaction
kinetic law: CDMT00297
reactant: CDMT00295
fast: false
reversible: false
name: fum efflux

556496
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00300
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00299
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00298
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00295
type: SpeciesReference
stoichiometry: 1.0
species: fum c

phpyr c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: phpyr

DCTPD
type: Reaction
product: CDMT00753
product: CDMT00754
name: dCTP deaminase
kinetic law: CDMT00755
reactant: CDMT00750
reactant: CDMT00752
reversible: false
fast: false
reactant: CDMT00751

CDMT00753
type: SpeciesReference
stoichiometry: 1.0
species: dutp c

CDMT00754
type: SpeciesReference
stoichiometry: 1.0
species: nh4 c

556613
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00758
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00757
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00756
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00750
type: SpeciesReference
stoichiometry: 1.0
species: dctp c

CDMT00752
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00751
type: SpeciesReference
stoichiometry: 1.0
species: h c

DHDPRy
type: Reaction
reversible: false
reactant: CDMT00142
fast: false
reactant: CDMT00141
reactant: CDMT00143
kinetic law: CDMT00146
product: CDMT00145
product: CDMT00144
name: dihydrodipicolinate reductase (NADPH)

CDMT00142
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00141
type: SpeciesReference
stoichiometry: 1.0
species: 23dhdp c

23dhdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 23dhdp

CDMT00143
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

556456
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00149
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00148
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00147
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00145
type: SpeciesReference
stoichiometry: 1.0
species: thdp c

CDMT00144
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

time
type: SBMLUnitsDef
unit: CDMT02142
name: time

CDMT02142
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND

pi p
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: p
name: pi

NADH6pp
type: Reaction
reactant: CDMT02091
reactant: CDMT02090
reversible: false
product: CDMT02093
product: CDMT02092
reactant: CDMT02089
fast: false
kinetic law: CDMT02095
product: CDMT02094
name: NADH dehydrogenase (ubiquinone-8 & 3.5 protons) (periplasm)

CDMT02091
type: SpeciesReference
stoichiometry: 10.0
species: q8 c

CDMT02090
type: SpeciesReference
stoichiometry: 10.0
species: nadh c

CDMT02093
type: SpeciesReference
stoichiometry: 10.0
species: nad c

CDMT02092
type: SpeciesReference
stoichiometry: 35.0
species: h p

h p
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: p
name: h

CDMT02089
type: SpeciesReference
stoichiometry: 45.0
species: h c

556869
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02098
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02097
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02096
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02094
type: SpeciesReference
stoichiometry: 10.0
species: q8h2 c

BPNT
type: Reaction
kinetic law: CDMT02047
product: CDMT02046
product: CDMT02045
reactant: CDMT02044
reactant: CDMT02043
fast: false
reversible: false
name: 3',5'-bisphosphate nucleotidase

556859
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02050
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02049
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02048
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02046
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT02045
type: SpeciesReference
stoichiometry: 1.0
species: amp c

CDMT02044
type: SpeciesReference
stoichiometry: 1.0
species: pap c

CDMT02043
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

PYK
type: Reaction
product: CDMT00780
kinetic law: CDMT00782
name: pyruvate kinase
reactant: CDMT00779
reversible: false
fast: false
product: CDMT00781
reactant: CDMT00777
reactant: CDMT00778

CDMT00780
type: SpeciesReference
stoichiometry: 1.0
species: atp c

556619
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00785
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00784
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00783
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00779
type: SpeciesReference
stoichiometry: 1.0
species: pep c

CDMT00781
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

CDMT00777
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00778
type: SpeciesReference
stoichiometry: 1.0
species: h c

UP thmmp
type: Reaction
kinetic law: CDMT01715
product: CDMT01714
fast: false
reversible: false
name: thmmp exchange

556795
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01718
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01717
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT01716
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01714
type: SpeciesReference
stoichiometry: 1.0
species: thmmp c

UP 8aonn
type: Reaction
kinetic law: CDMT01211
product: CDMT01210
fast: false
reversible: false
name: 8aonn exchange

556712
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01214
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01213
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT01212
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01210
type: SpeciesReference
stoichiometry: 1.0
species: 8aonn c

8aonn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 8aonn

CYTBO3pp
type: Reaction
product: CDMT01790
fast: false
reversible: false
reactant: CDMT01787
kinetic law: CDMT01791
reactant: CDMT01785
product: CDMT01788
name: cytochrome oxidase bo3 (ubiquinol-8: 2.5 protons) (periplasm)
product: CDMT01789
reactant: CDMT01786

CDMT01790
type: SpeciesReference
stoichiometry: 10.0
species: q8 c

CDMT01787
type: SpeciesReference
stoichiometry: 10.0
species: q8h2 c

556810
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01794
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01793
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01792
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01785
type: SpeciesReference
stoichiometry: 25.0
species: h c

CDMT01788
type: SpeciesReference
stoichiometry: 25.0
species: h p

CDMT01789
type: SpeciesReference
stoichiometry: 10.0
species: h2o c

CDMT01786
type: SpeciesReference
stoichiometry: 5.0
species: o2 c

EF rhcys 40 c 41
type: Reaction
kinetic law: CDMT00454
reactant: CDMT00452
fast: false
reversible: false
name: rhcys exchange

556536
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00457
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00456
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00455
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00452
type: SpeciesReference
stoichiometry: 1.0
species: rhcys c

rhcys c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: rhcys

PIt2rpp
type: Reaction
kinetic law: CDMT01111
product: CDMT01110
product: CDMT01109
reactant: CDMT01108
reactant: CDMT01107
fast: false
reversible: false
name: phosphate reversible transport via symport (periplasm)

556694
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01114
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01113
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01112
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01110
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01109
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01108
type: SpeciesReference
stoichiometry: 1.0
species: pi p

CDMT01107
type: SpeciesReference
stoichiometry: 1.0
species: h p

RBFSb
type: Reaction
kinetic law: CDMT00227
product: CDMT00226
product: CDMT00225
reactant: CDMT00224
fast: false
reversible: false
name: riboflavin synthase

556476
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00230
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00229
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00228
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00226
type: SpeciesReference
stoichiometry: 1.0
species: ribflv c

CDMT00225
type: SpeciesReference
stoichiometry: 1.0
species: 4r5au c

CDMT00224
type: SpeciesReference
stoichiometry: 2.0
species: dmlz c

citr 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: citr-L

PRATPP
type: Reaction
product: CDMT00052
fast: false
product: CDMT00050
kinetic law: CDMT00053
reactant: CDMT00049
reversible: false
name: phosphoribosyl-ATP pyrophosphatase
product: CDMT00051
reactant: CDMT00048

CDMT00052
type: SpeciesReference
stoichiometry: 1.0
species: prbamp c

CDMT00050
type: SpeciesReference
stoichiometry: 1.0
species: h c

556434
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00056
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00055
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00054
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00049
type: SpeciesReference
stoichiometry: 1.0
species: prbatp c

CDMT00051
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00048
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

RPE
type: Reaction
kinetic law: CDMT00275
product: CDMT00274
reactant: CDMT00273
fast: false
reversible: false
name: ribulose 5-phosphate 3-epimerase

556490
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00278
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00277
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00276
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00274
type: SpeciesReference
stoichiometry: 1.0
species: xu5p 45 D c

CDMT00273
type: SpeciesReference
stoichiometry: 1.0
species: ru5p 45 D c

UP ala 45 B
type: Reaction
kinetic law: CDMT00695
product: CDMT00694
fast: false
reversible: false
name: ala-B exchange

556599
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00698
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00697
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00696
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00694
type: SpeciesReference
stoichiometry: 1.0
species: ala 45 B c

AHCYSNS
type: Reaction
kinetic law: CDMT00396
product: CDMT00395
product: CDMT00394
reactant: CDMT00393
reactant: CDMT00392
fast: false
reversible: false
name: S-adenosylhomocysteine nucleosidase

556522
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00399
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00398
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00397
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00395
type: SpeciesReference
stoichiometry: 1.0
species: rhcys c

CDMT00394
type: SpeciesReference
stoichiometry: 1.0
species: ade c

CDMT00393
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00392
type: SpeciesReference
stoichiometry: 1.0
species: ahcys c

DHDPS
type: Reaction
fast: false
reactant: CDMT01348
reactant: CDMT01349
name: dihydrodipicolinate synthase
reversible: false
kinetic law: CDMT01353
product: CDMT01351
product: CDMT01352
product: CDMT01350

CDMT01348
type: SpeciesReference
stoichiometry: 1.0
species: aspsa c

CDMT01349
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

556736
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01356
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01355
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01354
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01351
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01352
type: SpeciesReference
stoichiometry: 2.0
species: h2o c

CDMT01350
type: SpeciesReference
stoichiometry: 1.0
species: 23dhdp c

UAMAS
type: Reaction
kinetic law: CDMT01261
fast: false
product: CDMT01260
name: UDP-N-acetylmuramoyl-L-alanine synthetase
reactant: CDMT01254
reactant: CDMT01255
reactant: CDMT01256
product: CDMT01257
reversible: false
product: CDMT01258
product: CDMT01259

556721
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01264
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01263
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01262
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01260
type: SpeciesReference
stoichiometry: 1.0
species: uama c

CDMT01254
type: SpeciesReference
stoichiometry: 1.0
species: ala 45 L c

CDMT01255
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01256
type: SpeciesReference
stoichiometry: 1.0
species: uamr c

CDMT01257
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01258
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01259
type: SpeciesReference
stoichiometry: 1.0
species: pi c

EX succ 40 c 41
type: Reaction
kinetic law: CDMT00263
product: CDMT00262
fast: false
reversible: false
name: succ exchange

556486
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00266
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00265
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00264
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00262
type: SpeciesReference
stoichiometry: 1.0
species: succ c

GRTT
type: Reaction
kinetic law: CDMT00899
product: CDMT00898
product: CDMT00897
reactant: CDMT00896
reactant: CDMT00895
fast: false
reversible: false
name: geranyltranstransferase

556650
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00902
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00901
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00900
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00898
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00897
type: SpeciesReference
stoichiometry: 1.0
species: frdp c

CDMT00896
type: SpeciesReference
stoichiometry: 1.0
species: ipdp c

ipdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ipdp

CDMT00895
type: SpeciesReference
stoichiometry: 1.0
species: grdp c

grdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: grdp

NDPK7
type: Reaction
kinetic law: CDMT01845
product: CDMT01844
product: CDMT01843
reactant: CDMT01842
reactant: CDMT01841
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:dCDP)

556821
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01848
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01847
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01846
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01844
type: SpeciesReference
stoichiometry: 1.0
species: dctp c

CDMT01843
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01842
type: SpeciesReference
stoichiometry: 1.0
species: dcdp c

CDMT01841
type: SpeciesReference
stoichiometry: 1.0
species: atp c

HISTD
type: Reaction
product: CDMT01575
name: histidinol dehydrogenase
reactant: CDMT01571
product: CDMT01576
fast: false
reactant: CDMT01572
product: CDMT01574
reversible: false
kinetic law: CDMT01577
reactant: CDMT01573

CDMT01575
type: SpeciesReference
stoichiometry: 1.0
species: his 45 L c

his 45 L c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: his-L

CDMT01571
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01576
type: SpeciesReference
stoichiometry: 2.0
species: nadh c

CDMT01572
type: SpeciesReference
stoichiometry: 1.0
species: histd c

CDMT01574
type: SpeciesReference
stoichiometry: 3.0
species: h c

556778
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01580
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01579
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01578
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01573
type: SpeciesReference
stoichiometry: 2.0
species: nad c

UP pg EC 40 c 41
type: Reaction
kinetic law: CDMT00788
product: CDMT00787
fast: false
reversible: false
name: pg_EC uptake

556621
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00791
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00790
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00789
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00787
type: SpeciesReference
stoichiometry: 1.0
species: pg EC c

IPMD
type: Reaction
reactant: CDMT00026
name: 3-isopropylmalate dehydrogenase
product: CDMT00029
kinetic law: CDMT00030
reactant: CDMT00025
product: CDMT00028
reversible: false
product: CDMT00027
fast: false

CDMT00026
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT00029
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

556428
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00033
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00032
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00031
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00025
type: SpeciesReference
stoichiometry: 1.0
species: 3c2hmp c

CDMT00028
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00027
type: SpeciesReference
stoichiometry: 1.0
species: 3c4mop c

ugmda c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ugmda

UAGCVT
type: Reaction
kinetic law: CDMT01094
product: CDMT01093
product: CDMT01092
reactant: CDMT01091
reactant: CDMT01090
fast: false
reversible: false
name: UDP-N-acetylglucosamine 1-carboxyvinyltransferase

556691
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01097
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01096
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01095
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01093
type: SpeciesReference
stoichiometry: 1.0
species: uaccg c

uaccg c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: uaccg

CDMT01092
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01091
type: SpeciesReference
stoichiometry: 1.0
species: uacgam c

CDMT01090
type: SpeciesReference
stoichiometry: 1.0
species: pep c

CDPMEK
type: Reaction
product: CDMT02084
reactant: CDMT02081
fast: false
reversible: false
product: CDMT02083
name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
kinetic law: CDMT02085
reactant: CDMT02080
product: CDMT02082

CDMT02084
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT02081
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT02083
type: SpeciesReference
stoichiometry: 1.0
species: adp c

556867
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02088
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02087
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02086
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02080
type: SpeciesReference
stoichiometry: 1.0
species: 4c2me c

CDMT02082
type: SpeciesReference
stoichiometry: 1.0
species: 2p4c2me c

RBFK
type: Reaction
product: CDMT00309
kinetic law: CDMT00312
reversible: false
product: CDMT00311
fast: false
product: CDMT00310
name: riboflavin kinase
reactant: CDMT00307
reactant: CDMT00308

CDMT00309
type: SpeciesReference
stoichiometry: 1.0
species: adp c

556500
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00315
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00314
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00313
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00311
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00310
type: SpeciesReference
stoichiometry: 1.0
species: fmn c

CDMT00307
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00308
type: SpeciesReference
stoichiometry: 1.0
species: ribflv c

EX glyc EC 40 c 41
type: Reaction
kinetic law: CDMT01549
reactant: CDMT01547
fast: false
reversible: false
name: glyc exchange

556774
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01552
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01551
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01550
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01547
type: SpeciesReference
stoichiometry: 1.0
species: glyc c

GMHEPK
type: Reaction
reactant: CDMT00881
fast: false
product: CDMT00883
reactant: CDMT00880
product: CDMT00884
reversible: false
product: CDMT00882
kinetic law: CDMT00885
name: D-glycero-D-manno-heptose 7-phosphate kinase

CDMT00881
type: SpeciesReference
stoichiometry: 1.0
species: gmhep7p c

gmhep7p c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: gmhep7p

CDMT00883
type: SpeciesReference
stoichiometry: 1.0
species: gmhep17bp c

CDMT00880
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00884
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00882
type: SpeciesReference
stoichiometry: 1.0
species: adp c

556646
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00888
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00887
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00886
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

EF ac 40 c 41
type: Reaction
kinetic law: CDMT01492
reactant: CDMT01490
fast: false
reversible: false
name: ac efflux

556762
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01495
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01494
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01493
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01490
type: SpeciesReference
stoichiometry: 1.0
species: ac c

UP pan4p
type: Reaction
kinetic law: CDMT00318
product: CDMT00317
fast: false
reversible: false
name: pan4p exchange

556502
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00321
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00320
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00319
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00317
type: SpeciesReference
stoichiometry: 1.0
species: pan4p c

SULR
type: Reaction
product: CDMT01960
product: CDMT01961
reactant: CDMT01958
name: sulfite reductase (NADPH2)
reactant: CDMT01956
reversible: false
reactant: CDMT01957
product: CDMT01959
fast: false
kinetic law: CDMT01962

CDMT01960
type: SpeciesReference
stoichiometry: 1.0
species: h2s c

CDMT01961
type: SpeciesReference
stoichiometry: 3.0
species: nadp c

CDMT01958
type: SpeciesReference
stoichiometry: 1.0
species: so3 c

so3 c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: so3

CDMT01956
type: SpeciesReference
stoichiometry: 5.0
species: h c

CDMT01957
type: SpeciesReference
stoichiometry: 3.0
species: nadph c

CDMT01959
type: SpeciesReference
stoichiometry: 3.0
species: h2o c

556842
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01965
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01964
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01963
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

AMAOTr
type: Reaction
kinetic law: CDMT01614
product: CDMT01613
product: CDMT01612
reactant: CDMT01611
reactant: CDMT01610
fast: false
reversible: false
name: adenosylmethionine-8-amino-7-oxononanoate transaminase

556784
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01617
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01616
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01615
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01613
type: SpeciesReference
stoichiometry: 1.0
species: dann c

CDMT01612
type: SpeciesReference
stoichiometry: 1.0
species: amob c

CDMT01611
type: SpeciesReference
stoichiometry: 1.0
species: amet c

CDMT01610
type: SpeciesReference
stoichiometry: 1.0
species: 8aonn c

TKT2
type: Reaction
kinetic law: CDMT00645
product: CDMT00644
product: CDMT00643
reactant: CDMT00642
reactant: CDMT00641
fast: false
reversible: false
name: transketolase

556585
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00648
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00647
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00646
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00644
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

CDMT00643
type: SpeciesReference
stoichiometry: 1.0
species: f6p c

CDMT00642
type: SpeciesReference
stoichiometry: 1.0
species: xu5p 45 D c

CDMT00641
type: SpeciesReference
stoichiometry: 1.0
species: e4p c

MNLptspp
type: Reaction
kinetic law: CDMT00717
product: CDMT00716
product: CDMT00715
reactant: CDMT00714
reactant: CDMT00713
fast: false
reversible: false
name: mannitol transport via PEP:Pyr PTS (periplasm)

556605
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00720
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00719
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00718
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00716
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

CDMT00715
type: SpeciesReference
stoichiometry: 1.0
species: mnl1p c

CDMT00714
type: SpeciesReference
stoichiometry: 1.0
species: pep c

CDMT00713
type: SpeciesReference
stoichiometry: 1.0
species: mnl p

mnl p
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: p
name: mnl

IPPS
type: Reaction
reactant: CDMT01873
name: 2-isopropylmalate synthase
product: CDMT01875
product: CDMT01876
fast: false
product: CDMT01877
reactant: CDMT01874
kinetic law: CDMT01878
reactant: CDMT01872
reversible: false

CDMT01873
type: SpeciesReference
stoichiometry: 1.0
species: accoa c

CDMT01875
type: SpeciesReference
stoichiometry: 1.0
species: 3c3hmp c

3c3hmp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3c3hmp

CDMT01876
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT01877
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01874
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

556827
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01881
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01880
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01879
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01872
type: SpeciesReference
stoichiometry: 1.0
species: 3mob c

FMNRED
type: Reaction
kinetic law: CDMT00044
product: CDMT00043
product: CDMT00042
reactant: CDMT00041
reactant: CDMT00040
fast: false
reversible: false
name: FMN reductase

556432
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00047
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00046
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00045
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00043
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT00042
type: SpeciesReference
stoichiometry: 1.0
species: fmnh2 c

CDMT00041
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00040
type: SpeciesReference
stoichiometry: 1.0
species: fmn c

DMATT
type: Reaction
kinetic law: CDMT01205
product: CDMT01204
product: CDMT01203
reactant: CDMT01202
reactant: CDMT01201
fast: false
reversible: false
name: dimethylallyltranstransferase

556711
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01208
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01207
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01206
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01204
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01203
type: SpeciesReference
stoichiometry: 1.0
species: grdp c

CDMT01202
type: SpeciesReference
stoichiometry: 1.0
species: ipdp c

CDMT01201
type: SpeciesReference
stoichiometry: 1.0
species: dmpp c

METAT
type: Reaction
product: CDMT01950
reactant: CDMT01946
name: methionine adenosyltransferase
reversible: false
fast: false
reactant: CDMT01948
product: CDMT01951
reactant: CDMT01947
kinetic law: CDMT01952
product: CDMT01949

CDMT01950
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01946
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01948
type: SpeciesReference
stoichiometry: 1.0
species: met 45 L c

CDMT01951
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01947
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

556840
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01955
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01954
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01953
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01949
type: SpeciesReference
stoichiometry: 1.0
species: amet c

HISTP
type: Reaction
kinetic law: CDMT01344
product: CDMT01343
product: CDMT01342
reactant: CDMT01341
reactant: CDMT01340
fast: false
reversible: false
name: histidinol-phosphatase

556735
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01347
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01346
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01345
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01343
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01342
type: SpeciesReference
stoichiometry: 1.0
species: histd c

CDMT01341
type: SpeciesReference
stoichiometry: 1.0
species: hisp c

CDMT01340
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

paps c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: paps

HSTPT
type: Reaction
kinetic law: CDMT00283
product: CDMT00282
product: CDMT00281
reactant: CDMT00280
reactant: CDMT00279
fast: false
reversible: false
name: histidinol-phosphate transaminase

556492
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00286
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00285
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00284
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00282
type: SpeciesReference
stoichiometry: 1.0
species: hisp c

CDMT00281
type: SpeciesReference
stoichiometry: 1.0
species: akg c

CDMT00280
type: SpeciesReference
stoichiometry: 1.0
species: imacp c

CDMT00279
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

GHMT2r
type: Reaction
reversible: false
product: CDMT00006
name: "glycine hydroxymethyltransferase, reversible"
reactant: CDMT00002
reactant: CDMT00003
product: CDMT00004
kinetic law: CDMT00007
product: CDMT00005
fast: false

CDMT00006
type: SpeciesReference
stoichiometry: 1.0
species: mlthf c

CDMT00002
type: SpeciesReference
stoichiometry: 1.0
species: ser 45 L c

CDMT00003
type: SpeciesReference
stoichiometry: 1.0
species: thf c

CDMT00004
type: SpeciesReference
stoichiometry: 1.0
species: gly c

556422
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

OBJECTIVE COEFFICIENT
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

UPPER BOUND
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

LOWER BOUND
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00005
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

EF cys 45 L 40 c 41
type: Reaction
kinetic law: CDMT00036
reactant: CDMT00034
fast: false
reversible: false
name: cys-L exchange

556430
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00039
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00038
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00037
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00034
type: SpeciesReference
stoichiometry: 1.0
species: cys 45 L c

ctp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: ctp

IGPS
type: Reaction
reactant: CDMT01145
fast: false
kinetic law: CDMT01149
reversible: false
product: CDMT01147
product: CDMT01148
product: CDMT01146
name: indole-3-glycerol-phosphate synthase
reactant: CDMT01144

CDMT01145
type: SpeciesReference
stoichiometry: 1.0
species: h c

556702
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01152
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01151
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01150
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01147
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT01148
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01146
type: SpeciesReference
stoichiometry: 1.0
species: 3ig3p c

CDMT01144
type: SpeciesReference
stoichiometry: 1.0
species: 2cpr5p c

ENO
type: Reaction
kinetic law: CDMT00876
product: CDMT00875
product: CDMT00874
reactant: CDMT00873
fast: false
reversible: false
name: enolase

556644
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00879
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00878
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00877
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00875
type: SpeciesReference
stoichiometry: 1.0
species: pep c

CDMT00874
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00873
type: SpeciesReference
stoichiometry: 1.0
species: 2pg c

CTPS2
type: Reaction
product: CDMT01196
reactant: CDMT01190
product: CDMT01193
reactant: CDMT01191
product: CDMT01192
reactant: CDMT01188
reactant: CDMT01189
product: CDMT01195
name: CTP synthase (glutamine)
reversible: false
kinetic law: CDMT01197
product: CDMT01194
fast: false

CDMT01196
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01190
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01193
type: SpeciesReference
stoichiometry: 1.0
species: ctp c

CDMT01191
type: SpeciesReference
stoichiometry: 1.0
species: utp c

CDMT01192
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01188
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01189
type: SpeciesReference
stoichiometry: 1.0
species: gln 45 L c

CDMT01195
type: SpeciesReference
stoichiometry: 2.0
species: h c

556709
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01200
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01199
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01198
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01194
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

NDPK3
type: Reaction
kinetic law: CDMT00653
product: CDMT00652
product: CDMT00651
reactant: CDMT00650
reactant: CDMT00649
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:CDP)

556587
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00656
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00655
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00654
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00652
type: SpeciesReference
stoichiometry: 1.0
species: ctp c

CDMT00651
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00650
type: SpeciesReference
stoichiometry: 1.0
species: cdp c

CDMT00649
type: SpeciesReference
stoichiometry: 1.0
species: atp c

S7PI
type: Reaction
kinetic law: CDMT00551
product: CDMT00550
reactant: CDMT00549
fast: false
reversible: false
name: sedoheptulose 7-phosphate isomerase

556561
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00554
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00553
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00552
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00550
type: SpeciesReference
stoichiometry: 1.0
species: gmhep7p c

CDMT00549
type: SpeciesReference
stoichiometry: 1.0
species: s7p c

DHFR
type: Reaction
name: dihydrofolate reductase
kinetic law: CDMT01586
reactant: CDMT01582
fast: false
product: CDMT01584
reversible: false
product: CDMT01585
reactant: CDMT01581
reactant: CDMT01583

556780
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01589
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01588
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01587
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01582
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01584
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT01585
type: SpeciesReference
stoichiometry: 1.0
species: thf c

CDMT01581
type: SpeciesReference
stoichiometry: 1.0
species: dhf c

CDMT01583
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

IPDPS
type: Reaction
product: CDMT00200
product: CDMT00202
reactant: CDMT00198
fast: false
reactant: CDMT00199
reversible: false
kinetic law: CDMT00203
product: CDMT00201
name: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)
reactant: CDMT00197

CDMT00200
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00202
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT00198
type: SpeciesReference
stoichiometry: 1.0
species: h2mb4p c

CDMT00199
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

556470
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00206
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00205
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00204
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00201
type: SpeciesReference
stoichiometry: 1.0
species: ipdp c

CDMT00197
type: SpeciesReference
stoichiometry: 1.0
species: h c

ARGSS
type: Reaction
kinetic law: CDMT01272
name: argininosuccinate synthase
reactant: CDMT01266
product: CDMT01271
reactant: CDMT01265
product: CDMT01270
product: CDMT01269
reactant: CDMT01267
fast: false
product: CDMT01268
reversible: false

556723
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01275
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01274
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01273
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01266
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01271
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01265
type: SpeciesReference
stoichiometry: 1.0
species: asp 45 L c

CDMT01270
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01269
type: SpeciesReference
stoichiometry: 1.0
species: argsuc c

argsuc c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: argsuc

CDMT01267
type: SpeciesReference
stoichiometry: 1.0
species: citr 45 L c

CDMT01268
type: SpeciesReference
stoichiometry: 1.0
species: amp c

ADK1
type: Reaction
kinetic law: CDMT01767
product: CDMT01766
reactant: CDMT01765
reactant: CDMT01764
fast: false
reversible: false
name: adenylate kinase

556806
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01770
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01769
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01768
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01766
type: SpeciesReference
stoichiometry: 2.0
species: adp c

CDMT01765
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01764
type: SpeciesReference
stoichiometry: 1.0
species: amp c

PAPSR
type: Reaction
product: CDMT00085
product: CDMT00084
reactant: CDMT00083
reactant: CDMT00082
fast: false
product: CDMT00087
name: phosphoadenylyl-sulfate reductase (thioredoxin)
product: CDMT00086
reversible: false
kinetic law: CDMT00088

CDMT00085
type: SpeciesReference
stoichiometry: 1.0
species: pap c

CDMT00084
type: SpeciesReference
stoichiometry: 2.0
species: h c

CDMT00083
type: SpeciesReference
stoichiometry: 1.0
species: trdrd c

CDMT00082
type: SpeciesReference
stoichiometry: 1.0
species: paps c

CDMT00087
type: SpeciesReference
stoichiometry: 1.0
species: trdox c

CDMT00086
type: SpeciesReference
stoichiometry: 1.0
species: so3 c

556442
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00091
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00090
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00089
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

murein5p5p p
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: p
name: murein5p5p

MEPCT
type: Reaction
reactant: CDMT00207
reversible: false
reactant: CDMT00208
name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
product: CDMT00211
reactant: CDMT00209
kinetic law: CDMT00212
fast: false
product: CDMT00210

CDMT00207
type: SpeciesReference
stoichiometry: 1.0
species: 2me4p c

CDMT00208
type: SpeciesReference
stoichiometry: 1.0
species: ctp c

CDMT00211
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00209
type: SpeciesReference
stoichiometry: 1.0
species: h c

556472
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00215
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00214
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00213
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00210
type: SpeciesReference
stoichiometry: 1.0
species: 4c2me c

EF ile 45 L 40 c 41
type: Reaction
kinetic law: CDMT00349
reactant: CDMT00347
fast: false
reversible: false
name: Isoleucine exchange

556510
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00352
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00351
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00350
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00347
type: SpeciesReference
stoichiometry: 1.0
species: ile 45 L c

IPPMIb
type: Reaction
kinetic law: CDMT01868
product: CDMT01867
product: CDMT01866
reactant: CDMT01865
fast: false
reversible: false
name: 2-isopropylmalate hydratase

556825
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01871
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01870
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01869
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01867
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01866
type: SpeciesReference
stoichiometry: 1.0
species: 2ippm c

CDMT01865
type: SpeciesReference
stoichiometry: 1.0
species: 3c3hmp c

MOHMT
type: Reaction
product: CDMT01314
reversible: false
reactant: CDMT01313
reactant: CDMT01311
product: CDMT01315
name: 3-methyl-2-oxobutanoate hydroxymethyltransferase
kinetic law: CDMT01316
fast: false
reactant: CDMT01312

CDMT01314
type: SpeciesReference
stoichiometry: 1.0
species: 2dhp c

CDMT01313
type: SpeciesReference
stoichiometry: 1.0
species: mlthf c

CDMT01311
type: SpeciesReference
stoichiometry: 1.0
species: 3mob c

CDMT01315
type: SpeciesReference
stoichiometry: 1.0
species: thf c

556730
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01319
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01318
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01317
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01312
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

PSCVT
type: Reaction
kinetic law: CDMT00486
product: CDMT00485
product: CDMT00484
reactant: CDMT00483
reactant: CDMT00482
fast: false
reversible: false
name: 3-phosphoshikimate 1-carboxyvinyltransferase

556544
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00489
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00488
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00487
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00485
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00484
type: SpeciesReference
stoichiometry: 1.0
species: 3psme c

CDMT00483
type: SpeciesReference
stoichiometry: 1.0
species: skm5p c

CDMT00482
type: SpeciesReference
stoichiometry: 1.0
species: pep c

EF akg 40 c 41
type: Reaction
kinetic law: CDMT01134
reactant: CDMT01132
fast: false
reversible: false
name: akg efflux

556699
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01137
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01136
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01135
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01132
type: SpeciesReference
stoichiometry: 1.0
species: akg c

EN apoACP
type: Reaction
kinetic law: CDMT01543
reactant: CDMT01541
fast: false
reversible: false
name: apoACP exchange

556772
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01546
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01545
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01544
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01541
type: SpeciesReference
stoichiometry: 1.0
species: apoACP c

UP mnl 40 p 41
type: Reaction
kinetic law: CDMT01042
product: CDMT01041
fast: false
reversible: false
name: mnl exchange

556682
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01045
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01044
type: LocalParameter
units: mmol per gDW per hr
value: 50.0

CDMT01043
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01041
type: SpeciesReference
stoichiometry: 1.0
species: mnl p

EF trp 45 L 40 c 41
type: Reaction
kinetic law: CDMT01916
reactant: CDMT01914
fast: false
reversible: false
name: Tryptophan exchange

556834
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01919
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01918
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01917
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01914
type: SpeciesReference
stoichiometry: 1.0
species: trp 45 L c

PDH
type: Reaction
reactant: CDMT01399
product: CDMT01400
reactant: CDMT01397
kinetic law: CDMT01403
product: CDMT01401
reactant: CDMT01398
reversible: false
fast: false
product: CDMT01402
name: pyruvate dehydrogenase

CDMT01399
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

CDMT01400
type: SpeciesReference
stoichiometry: 1.0
species: accoa c

CDMT01397
type: SpeciesReference
stoichiometry: 1.0
species: coa c

556745
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01406
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01405
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01404
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01401
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT01398
type: SpeciesReference
stoichiometry: 1.0
species: nad c

CDMT01402
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

ACKr
type: Reaction
kinetic law: CDMT01641
product: CDMT01640
product: CDMT01639
reactant: CDMT01638
reactant: CDMT01637
fast: false
reversible: false
name: acetate kinase

556789
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01644
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01643
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01642
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01640
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01639
type: SpeciesReference
stoichiometry: 1.0
species: actp c

CDMT01638
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01637
type: SpeciesReference
stoichiometry: 1.0
species: ac c

ACLS
type: Reaction
kinetic law: CDMT00509
product: CDMT00508
product: CDMT00507
reactant: CDMT00506
reactant: CDMT00505
fast: false
reversible: false
name: acetolactate synthase

556550
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00512
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00511
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00510
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00508
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT00507
type: SpeciesReference
stoichiometry: 1.0
species: alac 45 S c

CDMT00506
type: SpeciesReference
stoichiometry: 2.0
species: pyr c

CDMT00505
type: SpeciesReference
stoichiometry: 1.0
species: h c

IG3PS
type: Reaction
product: CDMT00387
product: CDMT00384
kinetic law: CDMT00388
reactant: CDMT00382
reactant: CDMT00383
product: CDMT00386
reversible: false
product: CDMT00385
name: Imidazole-glycerol-3-phosphate synthase
fast: false

CDMT00387
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00384
type: SpeciesReference
stoichiometry: 1.0
species: aicar c

556520
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00391
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00390
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00389
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00382
type: SpeciesReference
stoichiometry: 1.0
species: gln 45 L c

CDMT00383
type: SpeciesReference
stoichiometry: 1.0
species: prlp c

CDMT00386
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT00385
type: SpeciesReference
stoichiometry: 1.0
species: eig3p c

UP glc 45 D 40 p 41
type: Reaction
kinetic law: CDMT02101
product: CDMT02100
fast: false
reversible: false
name: D-glucose uptake

556870
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02104
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02103
type: LocalParameter
units: mmol per gDW per hr
value: 100.0

CDMT02102
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02100
type: SpeciesReference
stoichiometry: 1.0
species: glc 45 D p

ANS
type: Reaction
reactant: CDMT01022
name: anthranilate synthase
kinetic law: CDMT01028
fast: false
product: CDMT01026
reactant: CDMT01023
reversible: false
product: CDMT01025
product: CDMT01027
product: CDMT01024

CDMT01022
type: SpeciesReference
stoichiometry: 1.0
species: chor c

556679
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01031
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01030
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01029
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01026
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01023
type: SpeciesReference
stoichiometry: 1.0
species: gln 45 L c

CDMT01025
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT01027
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

CDMT01024
type: SpeciesReference
stoichiometry: 1.0
species: anth c

DB4PS
type: Reaction
kinetic law: CDMT01336
product: CDMT01335
product: CDMT01334
product: CDMT01333
reactant: CDMT01332
fast: false
reversible: false
name: "3,4-Dihydroxy-2-butanone-4-phosphate synthase"

556733
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01339
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01338
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01337
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01335
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01334
type: SpeciesReference
stoichiometry: 1.0
species: for c

CDMT01333
type: SpeciesReference
stoichiometry: 1.0
species: db4p c

CDMT01332
type: SpeciesReference
stoichiometry: 1.0
species: ru5p 45 D c

DHPPDA2
type: Reaction
reactant: CDMT00573
product: CDMT00574
fast: false
reactant: CDMT00572
reversible: false
reactant: CDMT00571
kinetic law: CDMT00576
name: diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)
product: CDMT00575

CDMT00573
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00574
type: SpeciesReference
stoichiometry: 1.0
species: 5apru c

CDMT00572
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00571
type: SpeciesReference
stoichiometry: 1.0
species: 25drapp c

556567
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00579
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00578
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00577
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00575
type: SpeciesReference
stoichiometry: 1.0
species: nh4 c

OCBT
type: Reaction
product: CDMT01900
kinetic law: CDMT01902
name: ornithine carbamoyltransferase
product: CDMT01899
fast: false
product: CDMT01901
reactant: CDMT01898
reactant: CDMT01897
reversible: false

CDMT01900
type: SpeciesReference
stoichiometry: 1.0
species: h c

556831
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01905
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01904
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01903
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01899
type: SpeciesReference
stoichiometry: 1.0
species: citr 45 L c

CDMT01901
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01898
type: SpeciesReference
stoichiometry: 1.0
species: orn c

CDMT01897
type: SpeciesReference
stoichiometry: 1.0
species: cbp c

cbp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: cbp

MTHFD
type: Reaction
kinetic law: CDMT00257
product: CDMT00256
product: CDMT00255
reactant: CDMT00254
reactant: CDMT00253
fast: false
reversible: false
name: methylenetetrahydrofolate dehydrogenase (NADP)

556484
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00260
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00259
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00258
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00256
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00255
type: SpeciesReference
stoichiometry: 1.0
species: methf c

CDMT00254
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT00253
type: SpeciesReference
stoichiometry: 1.0
species: mlthf c

GF6PTA
type: Reaction
kinetic law: CDMT02024
product: CDMT02023
product: CDMT02022
reactant: CDMT02021
reactant: CDMT02020
fast: false
reversible: false
name: glutamine-fructose-6-phosphate transaminase

556855
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02027
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02026
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02025
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02023
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT02022
type: SpeciesReference
stoichiometry: 1.0
species: gam6p c

CDMT02021
type: SpeciesReference
stoichiometry: 1.0
species: gln 45 L c

CDMT02020
type: SpeciesReference
stoichiometry: 1.0
species: f6p c

EX ade 40 c 41
type: Reaction
kinetic law: CDMT01284
product: CDMT01283
fast: false
reversible: false
name: ade exchange

556726
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01287
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01286
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01285
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01283
type: SpeciesReference
stoichiometry: 1.0
species: ade c

SDPTA
type: Reaction
kinetic law: CDMT02000
product: CDMT01999
product: CDMT01998
reactant: CDMT01997
reactant: CDMT01996
fast: false
reversible: false
name: succinyldiaminopimelate transaminase

556850
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02003
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02002
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02001
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01999
type: SpeciesReference
stoichiometry: 1.0
species: sl26da c

CDMT01998
type: SpeciesReference
stoichiometry: 1.0
species: akg c

CDMT01997
type: SpeciesReference
stoichiometry: 1.0
species: sl2a6o c

sl2a6o c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: sl2a6o

CDMT01996
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

PPM
type: Reaction
kinetic law: CDMT02125
product: CDMT02124
reactant: CDMT02123
fast: false
reversible: false
name: phosphopentomutase

556875
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02128
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02127
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02126
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02124
type: SpeciesReference
stoichiometry: 1.0
species: r5p c

CDMT02123
type: SpeciesReference
stoichiometry: 1.0
species: r1p c

G1PACT
type: Reaction
kinetic law: CDMT00343
reversible: false
product: CDMT00342
product: CDMT00341
fast: false
name: glucosamine-1-phosphate N-acetyltransferase
product: CDMT00340
reactant: CDMT00339
reactant: CDMT00338

556508
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00346
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00345
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00344
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00342
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00341
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT00340
type: SpeciesReference
stoichiometry: 1.0
species: acgam1p c

CDMT00339
type: SpeciesReference
stoichiometry: 1.0
species: gam1p c

CDMT00338
type: SpeciesReference
stoichiometry: 1.0
species: accoa c

ADMDCr
type: Reaction
kinetic law: CDMT00826
product: CDMT00825
product: CDMT00824
reactant: CDMT00823
reactant: CDMT00822
fast: false
reversible: false
name: Adenosylmethionine decarboxylase

556631
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00829
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00828
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00827
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00825
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT00824
type: SpeciesReference
stoichiometry: 1.0
species: ametam c

CDMT00823
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00822
type: SpeciesReference
stoichiometry: 1.0
species: amet c

dgtp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dgtp

EF Biomass 40 c 41
type: Reaction
kinetic law: CDMT01992
reactant: CDMT01990
fast: false
reversible: false
name: L-Valine exchange

556848
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01995
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01994
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01993
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01990
type: SpeciesReference
stoichiometry: 1.0
species: Biomass c

Biomass c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: Biomass

DHQS
type: Reaction
kinetic law: CDMT00591
product: CDMT00590
product: CDMT00589
reactant: CDMT00588
fast: false
reversible: false
name: 3-dehydroquinate synthase

556571
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00594
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00593
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00592
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00590
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00589
type: SpeciesReference
stoichiometry: 1.0
species: 3dhq c

3dhq c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 3dhq

CDMT00588
type: SpeciesReference
stoichiometry: 1.0
species: 2dda7p c

RNDR2
type: Reaction
reactant: CDMT00522
name: ribonucleoside-diphosphate reductase (GDP)
kinetic law: CDMT00527
reversible: false
product: CDMT00524
product: CDMT00526
fast: false
product: CDMT00525
reactant: CDMT00523

CDMT00522
type: SpeciesReference
stoichiometry: 1.0
species: gdp c

556554
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00530
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00529
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00528
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00524
type: SpeciesReference
stoichiometry: 1.0
species: dgdp c

dgdp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dgdp

CDMT00526
type: SpeciesReference
stoichiometry: 1.0
species: trdox c

CDMT00525
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00523
type: SpeciesReference
stoichiometry: 1.0
species: trdrd c

DF co2 40 c 41
type: Reaction
kinetic law: CDMT00668
product: CDMT00667
fast: false
reversible: false
name: co2 exchange

556591
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00671
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00670
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00669
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00667
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

NDPK8
type: Reaction
kinetic law: CDMT01781
product: CDMT01780
product: CDMT01779
reactant: CDMT01778
reactant: CDMT01777
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:dADP)

556809
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01784
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01783
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01782
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01780
type: SpeciesReference
stoichiometry: 1.0
species: datp c

CDMT01779
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01778
type: SpeciesReference
stoichiometry: 1.0
species: dadp c

dadp c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dadp

CDMT01777
type: SpeciesReference
stoichiometry: 1.0
species: atp c

PAPPT3
type: Reaction
kinetic law: CDMT00967
product: CDMT00966
product: CDMT00965
reactant: CDMT00964
reactant: CDMT00963
fast: false
reversible: false
name: "phospho-N-acetylmuramoyl-pentapeptide-transferase (meso-2,6-diaminopimelate)"

556668
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00970
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00969
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00968
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00966
type: SpeciesReference
stoichiometry: 1.0
species: ump c

CDMT00965
type: SpeciesReference
stoichiometry: 1.0
species: uagmda c

CDMT00964
type: SpeciesReference
stoichiometry: 1.0
species: ugmda c

CDMT00963
type: SpeciesReference
stoichiometry: 1.0
species: udcpp c

VGRO
type: Reaction
reactant: CDMT01653
product: CDMT01698
reactant: CDMT01686
reactant: CDMT01678
reactant: CDMT01674
reactant: CDMT01669
reactant: CDMT01688
reactant: CDMT01684
reactant: CDMT01676
reactant: CDMT01657
reactant: CDMT01672
reactant: CDMT01693
reactant: CDMT01664
reactant: CDMT01660
reactant: CDMT01681
reactant: CDMT01655
reactant: CDMT01691
product: CDMT01697
reversible: false
reactant: CDMT01668
reactant: CDMT01689
reactant: CDMT01685
reactant: CDMT01659
reactant: CDMT01656
reactant: CDMT01695
reactant: CDMT01692
reactant: CDMT01666
reactant: CDMT01662
reactant: CDMT01683
name: biomass reaction
reactant: CDMT01654
reactant: CDMT01690
reactant: CDMT01671
product: CDMT01696
kinetic law: CDMT01700
product: CDMT01699
reactant: CDMT01687
reactant: CDMT01658
reactant: CDMT01679
reactant: CDMT01694
reactant: CDMT01675
reactant: CDMT01667
reactant: CDMT01682
reactant: CDMT01663
reactant: CDMT01677
reactant: CDMT01673
reactant: CDMT01670
reactant: CDMT01665
reactant: CDMT01680
reactant: CDMT01661
fast: false

CDMT01653
type: SpeciesReference
stoichiometry: 0.001
species: ribflv c

CDMT01698
type: SpeciesReference
stoichiometry: 0.33333
species: Biomass c

CDMT01686
type: SpeciesReference
stoichiometry: 0.036803
species: datp c

CDMT01678
type: SpeciesReference
stoichiometry: 0.069
species: trp 45 L c

CDMT01674
type: SpeciesReference
stoichiometry: 0.239
species: met 45 L c

CDMT01669
type: SpeciesReference
stoichiometry: 0.013297
species: dctp c

CDMT01688
type: SpeciesReference
stoichiometry: 0.001
species: amp c

CDMT01684
type: SpeciesReference
stoichiometry: 0.013297
species: dgtp c

CDMT01676
type: SpeciesReference
stoichiometry: 0.364935
species: arg 45 L c

CDMT01657
type: SpeciesReference
stoichiometry: 5.0E-5
species: fmnh2 c

CDMT01672
type: SpeciesReference
stoichiometry: 0.115384
species: his 45 L c

CDMT01693
type: SpeciesReference
stoichiometry: 6.0E-6
species: coa c

CDMT01664
type: SpeciesReference
stoichiometry: 5.0E-5
species: hemeO c

CDMT01660
type: SpeciesReference
stoichiometry: 5.0E-5
species: gthrd c

CDMT01681
type: SpeciesReference
stoichiometry: 0.582
species: gly c

CDMT01655
type: SpeciesReference
stoichiometry: 5.0E-5
species: udcpdp c

CDMT01691
type: SpeciesReference
stoichiometry: 1.3E-4
species: nadp c

CDMT01697
type: SpeciesReference
stoichiometry: 0.7302
species: ppi c

CDMT01668
type: SpeciesReference
stoichiometry: 0.0276
species: murein5p5p p

CDMT01689
type: SpeciesReference
stoichiometry: 0.00215
species: nad c

CDMT01685
type: SpeciesReference
stoichiometry: 0.036803
species: dttp c

CDMT01659
type: SpeciesReference
stoichiometry: 5.0E-5
species: pnto 45 R c

pnto 45 R c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: pnto-R

CDMT01656
type: SpeciesReference
stoichiometry: 5.0E-5
species: thf c

CDMT01695
type: SpeciesReference
stoichiometry: 3.0E-6
species: succoa c

CDMT01692
type: SpeciesReference
stoichiometry: 4.0E-4
species: nadph c

CDMT01666
type: SpeciesReference
stoichiometry: 0.126
species: ctp c

CDMT01662
type: SpeciesReference
stoichiometry: 5.0E-5
species: sheme c

sheme c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: sheme

CDMT01683
type: SpeciesReference
stoichiometry: 1.0E-5
species: fad c

CDMT01654
type: SpeciesReference
stoichiometry: 5.0E-5
species: ACP c

CDMT01690
type: SpeciesReference
stoichiometry: 5.0E-5
species: nadh c

CDMT01671
type: SpeciesReference
stoichiometry: 0.468
species: 3mop c

CDMT01696
type: SpeciesReference
stoichiometry: 45.5628
species: pi c

556792
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01703
type: LocalParameter
units: mmol per gDW per hr
value: 1.0

CDMT01702
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01701
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01699
type: SpeciesReference
stoichiometry: 45.5608
species: adp c

CDMT01687
type: SpeciesReference
stoichiometry: 45.7318
species: atp c

CDMT01658
type: SpeciesReference
stoichiometry: 0.00645
species: clpn EC c

CDMT01679
type: SpeciesReference
stoichiometry: 0.60909
species: 3mob c

CDMT01694
type: SpeciesReference
stoichiometry: 5.0E-5
species: accoa c

CDMT01675
type: SpeciesReference
stoichiometry: 0.807547
species: 4mop c

CDMT01667
type: SpeciesReference
stoichiometry: 0.136
species: utp c

CDMT01682
type: SpeciesReference
stoichiometry: 0.05
species: spmd c

CDMT01663
type: SpeciesReference
stoichiometry: 5.0E-5
species: btn c

CDMT01677
type: SpeciesReference
stoichiometry: 0.482
species: thr 45 L c

CDMT01673
type: SpeciesReference
stoichiometry: 0.571929
species: lys 45 L c

CDMT01670
type: SpeciesReference
stoichiometry: 0.332
species: phpyr c

CDMT01665
type: SpeciesReference
stoichiometry: 0.203
species: gtp c

CDMT01680
type: SpeciesReference
stoichiometry: 0.087
species: cys 45 L c

CDMT01661
type: SpeciesReference
stoichiometry: 5.0E-5
species: thmpp c

RNDR4
type: Reaction
reversible: false
kinetic law: CDMT01000
fast: false
product: CDMT00997
reactant: CDMT00995
name: ribonucleoside-diphosphate reductase (UDP)
product: CDMT00999
reactant: CDMT00996
product: CDMT00998

556674
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01003
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01002
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01001
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00997
type: SpeciesReference
stoichiometry: 1.0
species: dudp c

CDMT00995
type: SpeciesReference
stoichiometry: 1.0
species: trdrd c

CDMT00999
type: SpeciesReference
stoichiometry: 1.0
species: trdox c

CDMT00996
type: SpeciesReference
stoichiometry: 1.0
species: udp c

CDMT00998
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

EF val 45 L 40 c 41
type: Reaction
kinetic law: CDMT00334
reactant: CDMT00332
fast: false
reversible: false
name: L-Valine exchange

556506
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00337
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00336
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00335
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00332
type: SpeciesReference
stoichiometry: 1.0
species: val 45 L c

EF his 45 L 40 c 41
type: Reaction
kinetic law: CDMT00121
reactant: CDMT00119
fast: false
reversible: false
name: Histidine exchange

556450
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00124
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00123
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00122
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00119
type: SpeciesReference
stoichiometry: 1.0
species: his 45 L c

UDCPDPS
type: Reaction
kinetic law: CDMT00448
product: CDMT00447
product: CDMT00446
reactant: CDMT00445
reactant: CDMT00444
fast: false
reversible: false
name: Undecaprenyl diphosphate synthase

556534
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00451
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00450
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00449
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00447
type: SpeciesReference
stoichiometry: 1.0
species: udcpdp c

CDMT00446
type: SpeciesReference
stoichiometry: 8.0
species: ppi c

CDMT00445
type: SpeciesReference
stoichiometry: 8.0
species: ipdp c

CDMT00444
type: SpeciesReference
stoichiometry: 1.0
species: frdp c

ATPS4rpp
type: Reaction
reversible: false
name: ATP synthase (four protons for one ATP) (periplasm)
reactant: CDMT00557
product: CDMT00559
product: CDMT00558
kinetic law: CDMT00561
fast: false
reactant: CDMT00555
reactant: CDMT00556
product: CDMT00560

CDMT00557
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00559
type: SpeciesReference
stoichiometry: 3.0
species: h c

CDMT00558
type: SpeciesReference
stoichiometry: 1.0
species: atp c

556563
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00564
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00563
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00562
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00555
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00556
type: SpeciesReference
stoichiometry: 4.0
species: h p

CDMT00560
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

UGMDDS
type: Reaction
kinetic law: CDMT01422
product: CDMT01418
reversible: false
fast: false
product: CDMT01419
reactant: CDMT01415
reactant: CDMT01416
product: CDMT01421
name: "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase"
reactant: CDMT01417
product: CDMT01420

556748
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01425
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01424
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01423
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01418
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01419
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01415
type: SpeciesReference
stoichiometry: 1.0
species: alaala c

alaala c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: alaala

CDMT01416
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01421
type: SpeciesReference
stoichiometry: 1.0
species: ugmda c

CDMT01417
type: SpeciesReference
stoichiometry: 1.0
species: ugmd c

CDMT01420
type: SpeciesReference
stoichiometry: 1.0
species: pi c

ACHBS
type: Reaction
name: 2-aceto-2-hydroxybutanoate synthase
fast: false
product: CDMT00916
kinetic law: CDMT00917
reactant: CDMT00914
reversible: false
reactant: CDMT00913
reactant: CDMT00912
product: CDMT00915

CDMT00916
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

556654
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00920
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00919
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00918
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00914
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

CDMT00913
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00912
type: SpeciesReference
stoichiometry: 1.0
species: 2obut c

CDMT00915
type: SpeciesReference
stoichiometry: 1.0
species: 2ahbut c

NAMNPP
type: Reaction
name: nicotinic acid mononucleotide pyrophosphorylase
reactant: CDMT00099
reactant: CDMT00098
reactant: CDMT00100
reactant: CDMT00101
fast: false
kinetic law: CDMT00106
product: CDMT00105
reversible: false
product: CDMT00104
product: CDMT00102
product: CDMT00103

CDMT00099
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00098
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00100
type: SpeciesReference
stoichiometry: 1.0
species: nac c

CDMT00101
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

556446
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00109
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00108
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00107
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00105
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00104
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00102
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00103
type: SpeciesReference
stoichiometry: 1.0
species: nicrnt c

CBPS
type: Reaction
product: CDMT01302
reactant: CDMT01301
product: CDMT01303
reactant: CDMT01300
name: carbamoyl-phosphate synthase (glutamine-hydrolysing)
reversible: false
product: CDMT01304
product: CDMT01305
reactant: CDMT01298
product: CDMT01306
reactant: CDMT01299
kinetic law: CDMT01307
fast: false

CDMT01302
type: SpeciesReference
stoichiometry: 2.0
species: adp c

CDMT01301
type: SpeciesReference
stoichiometry: 1.0
species: hco3 c

CDMT01303
type: SpeciesReference
stoichiometry: 1.0
species: cbp c

CDMT01300
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01304
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT01305
type: SpeciesReference
stoichiometry: 2.0
species: h c

CDMT01298
type: SpeciesReference
stoichiometry: 2.0
species: atp c

CDMT01306
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01299
type: SpeciesReference
stoichiometry: 1.0
species: gln 45 L c

556729
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01310
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01309
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01308
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

EX pi 40 p 41
type: Reaction
kinetic law: CDMT01522
product: CDMT01521
fast: false
reversible: false
name: pi exchange

556768
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01525
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01524
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01523
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01521
type: SpeciesReference
stoichiometry: 1.0
species: pi p

UP alaala
type: Reaction
kinetic law: CDMT00303
product: CDMT00302
fast: false
reversible: false
name: alala exchange

556498
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00306
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00305
type: LocalParameter
units: mmol per gDW per hr
value: 5.0

CDMT00304
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00302
type: SpeciesReference
stoichiometry: 1.0
species: alaala c

ACGS
type: Reaction
name: N-acetylglutamate synthase
fast: false
kinetic law: CDMT00609
reactant: CDMT00605
reactant: CDMT00604
product: CDMT00608
product: CDMT00607
reversible: false
product: CDMT00606

556575
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00612
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00611
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00610
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00605
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT00604
type: SpeciesReference
stoichiometry: 1.0
species: accoa c

CDMT00608
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00607
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT00606
type: SpeciesReference
stoichiometry: 1.0
species: acglu c

GTHS
type: Reaction
fast: false
product: CDMT01017
reactant: CDMT01012
product: CDMT01014
reactant: CDMT01013
reversible: false
kinetic law: CDMT01018
reactant: CDMT01011
product: CDMT01015
product: CDMT01016
name: glutathione synthetase

CDMT01017
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01012
type: SpeciesReference
stoichiometry: 1.0
species: glucys c

CDMT01014
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01013
type: SpeciesReference
stoichiometry: 1.0
species: gly c

556677
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01021
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01020
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01019
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01011
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01015
type: SpeciesReference
stoichiometry: 1.0
species: gthrd c

CDMT01016
type: SpeciesReference
stoichiometry: 1.0
species: h c

ACOTA
type: Reaction
kinetic law: CDMT00220
product: CDMT00219
product: CDMT00218
reactant: CDMT00217
reactant: CDMT00216
fast: false
reversible: false
name: acetylornithine transaminase

556474
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00223
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00222
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00221
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00219
type: SpeciesReference
stoichiometry: 1.0
species: akg c

CDMT00218
type: SpeciesReference
stoichiometry: 1.0
species: acorn c

CDMT00217
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

CDMT00216
type: SpeciesReference
stoichiometry: 1.0
species: acg5sa c

NDPK5
type: Reaction
kinetic law: CDMT01861
product: CDMT01860
product: CDMT01859
reactant: CDMT01858
reactant: CDMT01857
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:dGDP)

556824
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01864
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01863
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01862
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01860
type: SpeciesReference
stoichiometry: 1.0
species: dgtp c

CDMT01859
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01858
type: SpeciesReference
stoichiometry: 1.0
species: dgdp c

CDMT01857
type: SpeciesReference
stoichiometry: 1.0
species: atp c

GND
type: Reaction
reactant: CDMT01629
product: CDMT01630
fast: false
product: CDMT01632
name: phosphogluconate dehydrogenase
product: CDMT01631
reactant: CDMT01628
kinetic law: CDMT01633
reversible: false

CDMT01629
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT01630
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT01632
type: SpeciesReference
stoichiometry: 1.0
species: ru5p 45 D c

CDMT01631
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT01628
type: SpeciesReference
stoichiometry: 1.0
species: 6pgc c

6pgc c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: 6pgc

556787
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01636
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01635
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01634
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

UMPK
type: Reaction
kinetic law: CDMT01119
product: CDMT01118
product: CDMT01117
reactant: CDMT01116
reactant: CDMT01115
fast: false
reversible: false
name: UMP kinase

556696
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01122
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01121
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01120
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01118
type: SpeciesReference
stoichiometry: 1.0
species: udp c

CDMT01117
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01116
type: SpeciesReference
stoichiometry: 1.0
species: ump c

CDMT01115
type: SpeciesReference
stoichiometry: 1.0
species: atp c

RNDR1
type: Reaction
product: CDMT00534
fast: false
reactant: CDMT00531
product: CDMT00533
name: ribonucleoside-diphosphate reductase (ADP)
reactant: CDMT00532
kinetic law: CDMT00536
product: CDMT00535
reversible: false

CDMT00534
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00531
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00533
type: SpeciesReference
stoichiometry: 1.0
species: dadp c

CDMT00532
type: SpeciesReference
stoichiometry: 1.0
species: trdrd c

556556
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00539
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00538
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00537
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00535
type: SpeciesReference
stoichiometry: 1.0
species: trdox c

PPNDH
type: Reaction
name: prephenate dehydratase
kinetic law: CDMT01738
product: CDMT01735
fast: false
product: CDMT01736
reactant: CDMT01733
product: CDMT01737
reactant: CDMT01734
reversible: false

556800
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01741
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01740
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01739
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01735
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT01736
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01733
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01737
type: SpeciesReference
stoichiometry: 1.0
species: phpyr c

CDMT01734
type: SpeciesReference
stoichiometry: 1.0
species: pphn c

DHORTS
type: Reaction
kinetic law: CDMT01649
product: CDMT01648
product: CDMT01647
reactant: CDMT01646
reactant: CDMT01645
fast: false
reversible: false
name: dihydroorotase

556790
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01652
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01651
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01650
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01648
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01647
type: SpeciesReference
stoichiometry: 1.0
species: dhor 45 S c

CDMT01646
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01645
type: SpeciesReference
stoichiometry: 1.0
species: cbasp c

ADSS
type: Reaction
fast: false
product: CDMT01084
kinetic law: CDMT01086
reactant: CDMT01080
product: CDMT01085
reactant: CDMT01081
reactant: CDMT01079
reversible: false
product: CDMT01083
name: adenylosuccinate synthase
product: CDMT01082

CDMT01084
type: SpeciesReference
stoichiometry: 2.0
species: h c

556689
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01089
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01088
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01087
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01080
type: SpeciesReference
stoichiometry: 1.0
species: gtp c

CDMT01085
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01081
type: SpeciesReference
stoichiometry: 1.0
species: imp c

CDMT01079
type: SpeciesReference
stoichiometry: 1.0
species: asp 45 L c

CDMT01083
type: SpeciesReference
stoichiometry: 1.0
species: gdp c

CDMT01082
type: SpeciesReference
stoichiometry: 1.0
species: dcamp c

PGL
type: Reaction
kinetic law: CDMT01746
product: CDMT01745
product: CDMT01744
reactant: CDMT01743
reactant: CDMT01742
fast: false
reversible: false
name: 6-phosphogluconolactonase

556801
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01749
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01748
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01747
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01745
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01744
type: SpeciesReference
stoichiometry: 1.0
species: 6pgc c

CDMT01743
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT01742
type: SpeciesReference
stoichiometry: 1.0
species: 6pgl c

DXPS
type: Reaction
reactant: CDMT00658
product: CDMT00661
reversible: false
product: CDMT00660
name: 1-deoxy-D-xylulose 5-phosphate synthase
reactant: CDMT00657
kinetic law: CDMT00662
reactant: CDMT00659
fast: false

CDMT00658
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00661
type: SpeciesReference
stoichiometry: 1.0
species: dxyl5p c

CDMT00660
type: SpeciesReference
stoichiometry: 1.0
species: co2 c

CDMT00657
type: SpeciesReference
stoichiometry: 1.0
species: g3p c

556589
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00665
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00664
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00663
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00659
type: SpeciesReference
stoichiometry: 1.0
species: pyr c

THDPS
type: Reaction
kinetic law: CDMT00495
product: CDMT00493
reactant: CDMT00490
reactant: CDMT00491
name: tetrahydrodipicolinate succinylase
product: CDMT00494
reactant: CDMT00492
reversible: false
fast: false

556546
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00498
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00497
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00496
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00493
type: SpeciesReference
stoichiometry: 1.0
species: coa c

CDMT00490
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00491
type: SpeciesReference
stoichiometry: 1.0
species: succoa c

CDMT00494
type: SpeciesReference
stoichiometry: 1.0
species: sl2a6o c

CDMT00492
type: SpeciesReference
stoichiometry: 1.0
species: thdp c

ACGK
type: Reaction
kinetic law: CDMT00683
product: CDMT00682
product: CDMT00681
reactant: CDMT00680
reactant: CDMT00679
fast: false
reversible: false
name: acetylglutamate kinase

556595
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00686
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00685
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00684
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00682
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT00681
type: SpeciesReference
stoichiometry: 1.0
species: acg5p c

CDMT00680
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT00679
type: SpeciesReference
stoichiometry: 1.0
species: acglu c

UAPGR
type: Reaction
reversible: false
kinetic law: CDMT00746
reactant: CDMT00742
reactant: CDMT00741
reactant: CDMT00743
name: UDP-N-acetylenolpyruvoylglucosamine reductase
fast: false
product: CDMT00745
product: CDMT00744

556611
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00749
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00748
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00747
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00742
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT00741
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00743
type: SpeciesReference
stoichiometry: 1.0
species: uaccg c

CDMT00745
type: SpeciesReference
stoichiometry: 1.0
species: uamr c

CDMT00744
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

ASPCT
type: Reaction
name: aspartate carbamoyltransferase
kinetic law: CDMT00545
fast: false
reversible: false
reactant: CDMT00540
product: CDMT00544
reactant: CDMT00541
product: CDMT00543
product: CDMT00542

556559
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00548
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00547
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00546
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00540
type: SpeciesReference
stoichiometry: 1.0
species: asp 45 L c

CDMT00544
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT00541
type: SpeciesReference
stoichiometry: 1.0
species: cbp c

CDMT00543
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00542
type: SpeciesReference
stoichiometry: 1.0
species: cbasp c

ORPT
type: Reaction
kinetic law: CDMT01977
product: CDMT01976
product: CDMT01975
reactant: CDMT01974
reactant: CDMT01973
fast: false
reversible: false
name: orotate phosphoribosyltransferase

556845
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01980
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01979
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01978
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01976
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01975
type: SpeciesReference
stoichiometry: 1.0
species: orot5p c

CDMT01974
type: SpeciesReference
stoichiometry: 1.0
species: prpp c

CDMT01973
type: SpeciesReference
stoichiometry: 1.0
species: orot c

DHQD
type: Reaction
kinetic law: CDMT00675
product: CDMT00674
product: CDMT00673
reactant: CDMT00672
fast: false
reversible: false
name: 3-dehydroquinate dehydratase

556593
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00678
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00677
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00676
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00674
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00673
type: SpeciesReference
stoichiometry: 1.0
species: 3dhsk c

CDMT00672
type: SpeciesReference
stoichiometry: 1.0
species: 3dhq c

EF leu 45 L 40 c 41
type: Reaction
kinetic law: CDMT00951
reactant: CDMT00949
fast: false
reversible: false
name: Leucine exchange

556664
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00954
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00953
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00952
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00949
type: SpeciesReference
stoichiometry: 1.0
species: leu 45 L c

NDPK4
type: Reaction
kinetic law: CDMT01853
product: CDMT01852
product: CDMT01851
reactant: CDMT01850
reactant: CDMT01849
fast: false
reversible: false
name: nucleoside-diphosphate kinase (ATP:dTDP)

556822
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01856
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01855
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01854
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01852
type: SpeciesReference
stoichiometry: 1.0
species: dttp c

CDMT01851
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01850
type: SpeciesReference
stoichiometry: 1.0
species: dtdp c

CDMT01849
type: SpeciesReference
stoichiometry: 1.0
species: atp c

DHFS
type: Reaction
reactant: CDMT01591
reactant: CDMT01592
kinetic law: CDMT01597
product: CDMT01593
reactant: CDMT01590
product: CDMT01594
product: CDMT01595
fast: false
name: dihydrofolate synthase
product: CDMT01596
reversible: false

CDMT01591
type: SpeciesReference
stoichiometry: 1.0
species: dhpt c

CDMT01592
type: SpeciesReference
stoichiometry: 1.0
species: glu 45 L c

556781
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01600
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01599
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01598
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01593
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01590
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01594
type: SpeciesReference
stoichiometry: 1.0
species: dhf c

CDMT01595
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01596
type: SpeciesReference
stoichiometry: 1.0
species: pi c

MPTG
type: Reaction
kinetic law: CDMT01361
product: CDMT01360
product: CDMT01359
product: CDMT01358
reactant: CDMT01357
fast: false
reversible: false
name: murein polymerizing transglycosylase

556738
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01364
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01363
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01362
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01360
type: SpeciesReference
stoichiometry: 2.0
species: udcpdp c

CDMT01359
type: SpeciesReference
stoichiometry: 1.0
species: murein5p5p p

CDMT01358
type: SpeciesReference
stoichiometry: 2.0
species: h c

CDMT01357
type: SpeciesReference
stoichiometry: 2.0
species: uaagmda c

UAAGDS
type: Reaction
kinetic law: CDMT01486
product: CDMT01484
reactant: CDMT01479
product: CDMT01482
product: CDMT01485
name: "UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase"
product: CDMT01483
reactant: CDMT01480
reactant: CDMT01481
reversible: false
fast: false

556760
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01489
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01488
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01487
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01484
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01479
type: SpeciesReference
stoichiometry: 1.0
species: 26dap 45 M c

CDMT01482
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01485
type: SpeciesReference
stoichiometry: 1.0
species: ugmd c

CDMT01483
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01480
type: SpeciesReference
stoichiometry: 1.0
species: atp c

CDMT01481
type: SpeciesReference
stoichiometry: 1.0
species: uamag c

PUNP4
type: Reaction
kinetic law: CDMT01459
product: CDMT01458
product: CDMT01457
reactant: CDMT01456
reactant: CDMT01455
fast: false
reversible: false
name: purine-nucleoside phosphorylase (Deoxyguanosine)

556756
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01462
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01461
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01460
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01458
type: SpeciesReference
stoichiometry: 1.0
species: gua c

CDMT01457
type: SpeciesReference
stoichiometry: 1.0
species: 2dr1p c

CDMT01456
type: SpeciesReference
stoichiometry: 1.0
species: pi c

CDMT01455
type: SpeciesReference
stoichiometry: 1.0
species: dgsn c

dgsn c
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: c
name: dgsn

SHCHF
type: Reaction
kinetic law: CDMT00981
product: CDMT00980
product: CDMT00979
reactant: CDMT00978
reactant: CDMT00977
fast: false
reversible: false
name: sirohydrochlorin ferrochetalase

556671
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00984
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00983
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00982
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00980
type: SpeciesReference
stoichiometry: 1.0
species: sheme c

CDMT00979
type: SpeciesReference
stoichiometry: 3.0
species: h c

CDMT00978
type: SpeciesReference
stoichiometry: 1.0
species: scl c

CDMT00977
type: SpeciesReference
stoichiometry: 1.0
species: fe2 c

PRAMPC
type: Reaction
kinetic law: CDMT02016
product: CDMT02015
reactant: CDMT02014
reactant: CDMT02013
fast: false
reversible: false
name: phosphoribosyl-AMP cyclohydrolase

556853
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02019
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02018
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02017
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02015
type: SpeciesReference
stoichiometry: 1.0
species: prfp c

CDMT02014
type: SpeciesReference
stoichiometry: 1.0
species: prbamp c

CDMT02013
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

IMPC
type: Reaction
kinetic law: CDMT00234
product: CDMT00233
product: CDMT00232
reactant: CDMT00231
fast: false
reversible: false
name: IMP cyclohydrolase

556478
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00237
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00236
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00235
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT00233
type: SpeciesReference
stoichiometry: 1.0
species: imp c

CDMT00232
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

CDMT00231
type: SpeciesReference
stoichiometry: 1.0
species: fprica c

PPA
type: Reaction
kinetic law: CDMT01723
product: CDMT01722
product: CDMT01721
reactant: CDMT01720
reactant: CDMT01719
fast: false
reversible: false
name: inorganic diphosphatase

556796
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01726
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01725
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01724
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01722
type: SpeciesReference
stoichiometry: 2.0
species: pi c

CDMT01721
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01720
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT01719
type: SpeciesReference
stoichiometry: 1.0
species: h2o c

HSDy
type: Reaction
name: homoserine dehydrogenase (NADPH)
product: CDMT01932
kinetic law: CDMT01934
reversible: false
fast: false
product: CDMT01933
reactant: CDMT01929
reactant: CDMT01931
reactant: CDMT01930

CDMT01932
type: SpeciesReference
stoichiometry: 1.0
species: hom 45 L c

556837
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01937
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01936
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01935
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01933
type: SpeciesReference
stoichiometry: 1.0
species: nadp c

CDMT01929
type: SpeciesReference
stoichiometry: 1.0
species: aspsa c

CDMT01931
type: SpeciesReference
stoichiometry: 1.0
species: nadph c

CDMT01930
type: SpeciesReference
stoichiometry: 1.0
species: h c

SHCHD2
type: Reaction
product: CDMT02030
fast: false
reactant: CDMT02028
name: sirohydrochlorin dehydrogenase (NAD)
product: CDMT02032
kinetic law: CDMT02033
product: CDMT02031
reversible: false
reactant: CDMT02029

CDMT02030
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT02028
type: SpeciesReference
stoichiometry: 1.0
species: dscl c

CDMT02032
type: SpeciesReference
stoichiometry: 1.0
species: scl c

556856
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02036
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02035
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT02034
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT02031
type: SpeciesReference
stoichiometry: 1.0
species: nadh c

CDMT02029
type: SpeciesReference
stoichiometry: 1.0
species: nad c

ADSK
type: Reaction
product: CDMT01155
reactant: CDMT01153
product: CDMT01157
reversible: false
product: CDMT01156
reactant: CDMT01154
kinetic law: CDMT01158
name: adenylyl-sulfate kinase
fast: false

CDMT01155
type: SpeciesReference
stoichiometry: 1.0
species: adp c

CDMT01153
type: SpeciesReference
stoichiometry: 1.0
species: aps c

CDMT01157
type: SpeciesReference
stoichiometry: 1.0
species: paps c

CDMT01156
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT01154
type: SpeciesReference
stoichiometry: 1.0
species: atp c

556703
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01161
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01160
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01159
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

ARGSL
type: Reaction
kinetic law: CDMT01184
product: CDMT01183
product: CDMT01182
reactant: CDMT01181
fast: false
reversible: false
name: argininosuccinate lyase

556708
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01187
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT01186
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT01185
type: LocalParameter
units: mmol per gDW per hr
value: -1.0E30

CDMT01183
type: SpeciesReference
stoichiometry: 1.0
species: fum c

CDMT01182
type: SpeciesReference
stoichiometry: 1.0
species: arg 45 L c

CDMT01181
type: SpeciesReference
stoichiometry: 1.0
species: argsuc c

PANTS
type: Reaction
name: pantothenate synthase
reactant: CDMT00418
fast: false
product: CDMT00420
product: CDMT00422
product: CDMT00419
reversible: false
product: CDMT00421
reactant: CDMT00416
kinetic law: CDMT00423
reactant: CDMT00417

CDMT00418
type: SpeciesReference
stoichiometry: 1.0
species: pant 45 R c

CDMT00420
type: SpeciesReference
stoichiometry: 1.0
species: h c

CDMT00422
type: SpeciesReference
stoichiometry: 1.0
species: ppi c

CDMT00419
type: SpeciesReference
stoichiometry: 1.0
species: amp c

CDMT00421
type: SpeciesReference
stoichiometry: 1.0
species: pnto 45 R c

CDMT00416
type: SpeciesReference
stoichiometry: 1.0
species: ala 45 B c

556528
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00426
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00425
type: LocalParameter
units: mmol per gDW per hr
value: 1.0E30

CDMT00424
type: LocalParameter
units: mmol per gDW per hr
value: 0.0

CDMT00417
type: SpeciesReference
stoichiometry: 1.0
species: atp c