MODEL1012090006
type: SBMLModel
parameter: COPASI41
parameter: COPASI81
reaction: COPASI122
parameter: COPASI83
reaction: COPASI101
parameter: COPASI63
reaction: COPASI110
species: COPASI11
species: COPASI4
species: COPASI17
species: COPASI30
curated: false
reaction: COPASI86
parameter: COPASI77
species: COPASI32
reaction: COPASI116
parameter: COPASI65
reaction: COPASI118
notes: This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
reaction: COPASI125
species: COPASI29
reaction: COPASI104
area units: area
reaction: COPASI106
reaction: COPASI98
species: COPASI25
parameter: COPASI56
reaction: COPASI127
reaction: COPASI113
parameter: COPASI58
initial assignment: MODEL1012090006#
reaction: COPASI129
species: COPASI6
reaction: COPASI109
species: COPASI37
species: COPASI8
reaction: COPASI92
parameter: COPASI44
reaction: COPASI94
parameter: COPASI50
parameter: COPASI52
reaction: COPASI91
reaction: COPASI89
parameter: COPASI68
reaction: COPASI97
parameter: COPASI74
parameter: COPASI40
name: Kim2011_Oscillator_ExtendedIII
reaction: COPASI121
species: COPASI38
parameter: COPASI80
parameter: COPASI60
reaction: COPASI85
parameter: COPASI62
parameter: COPASI64
species: COPASI31
species: COPASI21
reaction: COPASI115
reaction: COPASI117
species: COPASI33
reaction: COPASI112
reaction: COPASI103
parameter: COPASI76
parameter: COPASI55
parameter: COPASI49
substance units: substance
parameter: COPASI79
parameter: COPASI43
species: COPASI34
reaction: COPASI124
species: COPASI20
species: COPASI18
species: COPASI9
species: COPASI12
time units: time
parameter: COPASI67
parameter: COPASI71
species: COPASI14
parameter: COPASI69

COPASI41
type: Parameter
constant: true
value: 1.0E-7
name: T31tot

COPASI81
type: Parameter
constant: true
value: 13100.0
name: ksplus2

COPASI122
type: Reaction
kinetic law: 981890
product: 981878
reactant: 981866
reactant: 981854
fast: false
reversible: false
name: sI1activation

981878
type: SpeciesReference
stoichiometry: 1.0
species: COPASI35

COPASI35
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T31A1sI1

171344
type: Compartment
constant: true
size: 1.0
spatial dimensions: 3.0
name: compartment

981866
type: SpeciesReference
stoichiometry: 1.0
species: COPASI30

COPASI30
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A1sI1

981854
type: SpeciesReference
stoichiometry: 1.0
species: COPASI4

COPASI4
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0E-7
initial amount: NaN
in compartment: 171344
name: T31

COPASI83
type: Parameter
constant: true
value: 6730.0
name: ksplus3

COPASI101
type: Reaction
kinetic law: 980791
product: 980779
reactant: 980767
reactant: 980755
fast: false
reversible: true
name: RNaseHbinding2

980779
type: SpeciesReference
stoichiometry: 1.0
species: COPASI21

COPASI21
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNaseHA2rI2

980767
type: SpeciesReference
stoichiometry: 1.0
species: COPASI13

COPASI13
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A2rI2

980755
type: SpeciesReference
stoichiometry: 1.0
species: COPASI15

COPASI15
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.04E-8
initial amount: NaN
in compartment: 171344
name: RNaseH

COPASI63
type: Parameter
constant: true
value: 0.017
name: kcatOFF12

COPASI110
type: Reaction
kinetic law: 981263
product: 981251
reactant: 981239
reactant: 981227
fast: false
reversible: true
name: RNAPbinding7

981251
type: SpeciesReference
stoichiometry: 1.0
species: COPASI29

COPASI29
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT12A2sI2

981239
type: SpeciesReference
stoichiometry: 1.0
species: COPASI28

COPASI28
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T12A2sI2

981227
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI14
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 8.34E-8
initial amount: NaN
in compartment: 171344
name: RNAP

COPASI11
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A1rI1

COPASI17
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT12

COPASI86
type: Reaction
kinetic law: 979996
product: 979984
reactant: 979972
reactant: 979960
fast: false
reversible: false
name: Activation2

979984
type: SpeciesReference
stoichiometry: 1.0
species: COPASI10

COPASI10
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T31A1

979972
type: SpeciesReference
stoichiometry: 1.0
species: COPASI5

COPASI5
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.0E-7
initial amount: NaN
in compartment: 171344
name: A1

979960
type: SpeciesReference
stoichiometry: 1.0
species: COPASI4

COPASI77
type: Parameter
constant: true
value: 0.0
name: rI1init

COPASI32
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A3rI3

COPASI116
type: Reaction
kinetic law: 981577
product: 981565
reactant: 981553
reactant: 981541
fast: false
reversible: true
name: RNAPbinding8

981565
type: SpeciesReference
stoichiometry: 1.0
species: COPASI39

COPASI39
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT31A1sI1

981553
type: SpeciesReference
stoichiometry: 1.0
species: COPASI35

981541
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI65
type: Parameter
constant: true
value: 0.027
name: kcatOFF23

COPASI118
type: Reaction
kinetic law: 981686
product: 981674
product: 981662
product: 981650
reactant: 981638
fast: false
reversible: false
name: RNAPcat8

981674
type: SpeciesReference
stoichiometry: 1.0
species: COPASI6

COPASI6
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: rI3

981662
type: SpeciesReference
stoichiometry: 1.0
species: COPASI35

981650
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

981638
type: SpeciesReference
stoichiometry: 1.0
species: COPASI39

COPASI125
type: Reaction
kinetic law: 982056
product: 982042
reactant: 982029
reactant: 982016
fast: false
reversible: true
name: sI1binding2

982042
type: SpeciesReference
stoichiometry: 1.0
species: COPASI35

982029
type: SpeciesReference
stoichiometry: 1.0
species: COPASI36

COPASI36
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: sI1

982016
type: SpeciesReference
stoichiometry: 1.0
species: COPASI10

COPASI104
type: Reaction
kinetic law: 980938
product: 980926
reactant: 980912
reactant: 980900
fast: false
reversible: false
name: Activation3

980926
type: SpeciesReference
stoichiometry: 1.0
species: COPASI23

COPASI23
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T23A3

980912
type: SpeciesReference
stoichiometry: 1.0
species: COPASI12

COPASI12
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.0E-7
initial amount: NaN
in compartment: 171344
name: A3

980900
type: SpeciesReference
stoichiometry: 1.0
species: COPASI22

COPASI22
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.2E-7
initial amount: NaN
in compartment: 171344
name: T23

COPASI106
type: Reaction
kinetic law: 981047
product: 981035
reactant: 981023
reactant: 981011
fast: false
reversible: true
name: RNAPbinding5

981035
type: SpeciesReference
stoichiometry: 1.0
species: COPASI18

COPASI18
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT23A3

981023
type: SpeciesReference
stoichiometry: 1.0
species: COPASI23

981011
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI98
type: Reaction
kinetic law: 980635
product: 980623
product: 980611
product: 980599
reactant: 980587
fast: false
reversible: false
name: RNAPcat3

980623
type: SpeciesReference
stoichiometry: 1.0
species: COPASI7

COPASI7
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: rI1

980611
type: SpeciesReference
stoichiometry: 1.0
species: COPASI2

COPASI2
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0E-7
initial amount: NaN
in compartment: 171344
name: T12

980599
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

980587
type: SpeciesReference
stoichiometry: 1.0
species: COPASI17

COPASI25
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT31

COPASI56
type: Parameter
constant: true
value: 31.6
name: kminusON12

COPASI127
type: Reaction
kinetic law: 982167
product: 982155
product: 982143
reactant: 982131
reactant: 982118
fast: false
reversible: false
name: sI3annihilation

982155
type: SpeciesReference
stoichiometry: 1.0
species: COPASI37

COPASI37
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: sI3

982143
type: SpeciesReference
stoichiometry: 1.0
species: COPASI32

982131
type: SpeciesReference
stoichiometry: 1.0
species: COPASI31

COPASI31
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A3sI3

982118
type: SpeciesReference
stoichiometry: 1.0
species: COPASI6

COPASI113
type: Reaction
kinetic law: 981421
product: 981409
reactant: 981397
reactant: 981385
fast: false
reversible: true
name: sI2binding2

981409
type: SpeciesReference
stoichiometry: 1.0
species: COPASI28

981397
type: SpeciesReference
stoichiometry: 1.0
species: COPASI26

COPASI26
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: sI2

981385
type: SpeciesReference
stoichiometry: 1.0
species: COPASI9

COPASI9
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T12A2

COPASI58
type: Parameter
constant: true
value: 30.7
name: kminusON23

COPASI3
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.0E-7
initial amount: NaN
in compartment: 171344
name: A2

COPASI8
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: rI2

COPASI129
type: Reaction
kinetic law: 982264
product: 982251
reactant: 982239
reactant: 982227
fast: false
reversible: true
name: sI3binding2

982251
type: SpeciesReference
stoichiometry: 1.0
species: COPASI34

COPASI34
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: T23A3sI3

982239
type: SpeciesReference
stoichiometry: 1.0
species: COPASI37

982227
type: SpeciesReference
stoichiometry: 1.0
species: COPASI23

COPASI109
type: Reaction
kinetic law: 981215
product: 981203
product: 981191
product: 981179
reactant: 981167
fast: false
reversible: false
name: RNAPcat6

981203
type: SpeciesReference
stoichiometry: 1.0
species: COPASI6

981191
type: SpeciesReference
stoichiometry: 1.0
species: COPASI4

981179
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

981167
type: SpeciesReference
stoichiometry: 1.0
species: COPASI25

COPASI92
type: Reaction
kinetic law: 980311
product: 980299
reactant: 980287
reactant: 980275
fast: false
reversible: true
name: RNAPbinding1

980299
type: SpeciesReference
stoichiometry: 1.0
species: COPASI16

COPASI16
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT12A2

980287
type: SpeciesReference
stoichiometry: 1.0
species: COPASI9

980275
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI44
type: Parameter
constant: true
value: 2.0E-7
name: A2tot

COPASI94
type: Reaction
kinetic law: 980407
product: 980395
reactant: 980383
reactant: 980371
fast: false
reversible: true
name: RNAPbinding3

980395
type: SpeciesReference
stoichiometry: 1.0
species: COPASI17

980383
type: SpeciesReference
stoichiometry: 1.0
species: COPASI2

980371
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI50
type: Parameter
constant: true
value: 42400.0
name: kAI2

COPASI52
type: Parameter
constant: true
value: 8410.0
name: kTAI12

COPASI91
type: Reaction
kinetic law: 980263
product: 980251
product: 980238
reactant: 980226
reactant: 980214
fast: false
reversible: false
name: Inhibition2

980251
type: SpeciesReference
stoichiometry: 1.0
species: COPASI11

980238
type: SpeciesReference
stoichiometry: 1.0
species: COPASI4

980226
type: SpeciesReference
stoichiometry: 1.0
species: COPASI7

980214
type: SpeciesReference
stoichiometry: 1.0
species: COPASI10

COPASI89
type: Reaction
kinetic law: 980142
product: 980130
reactant: 980118
reactant: 980106
fast: false
reversible: false
name: Annihilation3

980130
type: SpeciesReference
stoichiometry: 1.0
species: COPASI32

980118
type: SpeciesReference
stoichiometry: 1.0
species: COPASI6

980106
type: SpeciesReference
stoichiometry: 1.0
species: COPASI12

COPASI68
type: Parameter
constant: true
value: 3410.0
name: kTA31

COPASI97
type: Reaction
kinetic law: 980575
product: 980563
product: 980551
product: 980539
reactant: 980527
fast: false
reversible: false
name: RNAPcat2

980563
type: SpeciesReference
stoichiometry: 1.0
species: COPASI8

980551
type: SpeciesReference
stoichiometry: 1.0
species: COPASI23

980539
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

980527
type: SpeciesReference
stoichiometry: 1.0
species: COPASI18

COPASI74
type: Parameter
constant: true
value: 1.2E-7
name: T23tot

COPASI40
type: Parameter
constant: true
value: 1.0E-7
name: T12tot

COPASI121
type: Reaction
kinetic law: 981842
product: 981830
product: 981818
reactant: 981806
fast: false
reversible: false
name: RNaseHcat3

981830
type: SpeciesReference
stoichiometry: 1.0
species: COPASI31

981818
type: SpeciesReference
stoichiometry: 1.0
species: COPASI15

981806
type: SpeciesReference
stoichiometry: 1.0
species: COPASI33

COPASI33
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNaseHA3rI3

COPASI38
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT23A3sI3

COPASI80
type: Parameter
constant: true
value: 0.285
name: kcatH3

COPASI60
type: Parameter
constant: true
value: 27.6
name: kminusH1

COPASI85
type: Reaction
kinetic law: 979948
product: 979936
reactant: 979923
reactant: 979911
fast: false
reversible: false
name: Activation1

979936
type: SpeciesReference
stoichiometry: 1.0
species: COPASI9

979923
type: SpeciesReference
stoichiometry: 1.0
species: COPASI3

979911
type: SpeciesReference
stoichiometry: 1.0
species: COPASI2

COPASI62
type: Parameter
constant: true
value: 0.061
name: kcatON12

COPASI64
type: Parameter
constant: true
value: 0.078
name: kcatON23

COPASI115
type: Reaction
kinetic law: 981529
product: 981517
product: 981505
reactant: 981493
reactant: 981481
fast: false
reversible: false
name: sI2annihilation

981517
type: SpeciesReference
stoichiometry: 1.0
species: COPASI26

981505
type: SpeciesReference
stoichiometry: 1.0
species: COPASI13

981493
type: SpeciesReference
stoichiometry: 1.0
species: COPASI8

981481
type: SpeciesReference
stoichiometry: 1.0
species: COPASI27

COPASI27
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: A2sI2

COPASI117
type: Reaction
kinetic law: 981626
product: 981614
reactant: 981602
reactant: 981589
fast: false
reversible: true
name: RNAPbinding9

981614
type: SpeciesReference
stoichiometry: 1.0
species: COPASI38

981602
type: SpeciesReference
stoichiometry: 1.0
species: COPASI34

981589
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI112
type: Reaction
kinetic law: 981373
product: 981361
reactant: 981349
reactant: 981336
fast: false
reversible: true
name: sI2binding1

981361
type: SpeciesReference
stoichiometry: 1.0
species: COPASI27

981349
type: SpeciesReference
stoichiometry: 1.0
species: COPASI26

981336
type: SpeciesReference
stoichiometry: 1.0
species: COPASI3

COPASI103
type: Reaction
kinetic law: 980888
product: 980876
product: 980864
reactant: 980852
fast: false
reversible: false
name: RNaseHcat2

980876
type: SpeciesReference
stoichiometry: 1.0
species: COPASI27

980864
type: SpeciesReference
stoichiometry: 1.0
species: COPASI15

980852
type: SpeciesReference
stoichiometry: 1.0
species: COPASI21

COPASI76
type: Parameter
constant: true
value: 0.83
name: ksminus1

COPASI55
type: Parameter
constant: true
value: 1.0E8
name: kplusH

COPASI49
type: Parameter
constant: true
value: 10400.0
name: kAI1

COPASI79
type: Parameter
constant: true
value: 9.0
name: kminusH3

COPASI43
type: Parameter
constant: true
value: 4.0E-7
name: A3tot

COPASI124
type: Reaction
kinetic law: 982003
product: 981990
reactant: 981977
reactant: 981964
fast: false
reversible: true
name: sI1binding1

981990
type: SpeciesReference
stoichiometry: 1.0
species: COPASI30

981977
type: SpeciesReference
stoichiometry: 1.0
species: COPASI36

981964
type: SpeciesReference
stoichiometry: 1.0
species: COPASI5

COPASI20
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNaseHA1rI1

COPASI67
type: Parameter
constant: true
value: 0.211
name: kcatH2

COPASI71
type: Parameter
constant: true
value: 167.0
name: kminusOFF31

COPASI69
type: Parameter
constant: true
value: 4290.0
name: kTAI31

COPASI73
type: Parameter
constant: true
value: 0.028
name: kcatOFF31

COPASI126
type: Reaction
kinetic law: 982106
product: 982094
reactant: 982082
reactant: 982069
fast: false
reversible: false
name: sI3activation

982094
type: SpeciesReference
stoichiometry: 1.0
species: COPASI34

982082
type: SpeciesReference
stoichiometry: 1.0
species: COPASI31

982069
type: SpeciesReference
stoichiometry: 1.0
species: COPASI22

COPASI128
type: Reaction
kinetic law: 982215
product: 982203
reactant: 982191
reactant: 982179
fast: false
reversible: true
name: sI3binding1

982203
type: SpeciesReference
stoichiometry: 1.0
species: COPASI31

982191
type: SpeciesReference
stoichiometry: 1.0
species: COPASI37

982179
type: SpeciesReference
stoichiometry: 1.0
species: COPASI12

COPASI120
type: Reaction
kinetic law: 981794
product: 981782
reactant: 981770
reactant: 981758
fast: false
reversible: true
name: RNaseHbinding3

981782
type: SpeciesReference
stoichiometry: 1.0
species: COPASI33

981770
type: SpeciesReference
stoichiometry: 1.0
species: COPASI32

981758
type: SpeciesReference
stoichiometry: 1.0
species: COPASI15

COPASI108
type: Reaction
kinetic law: 981155
product: 981143
product: 981131
product: 981119
reactant: 981107
fast: false
reversible: false
name: RNAPcat5

981143
type: SpeciesReference
stoichiometry: 1.0
species: COPASI6

981131
type: SpeciesReference
stoichiometry: 1.0
species: COPASI10

981119
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

981107
type: SpeciesReference
stoichiometry: 1.0
species: COPASI24

COPASI24
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT31A1

COPASI100
type: Reaction
kinetic law: 980743
product: 980731
reactant: 980719
reactant: 980707
fast: false
reversible: true
name: RNaseHbinding1

980731
type: SpeciesReference
stoichiometry: 1.0
species: COPASI20

980719
type: SpeciesReference
stoichiometry: 1.0
species: COPASI11

980707
type: SpeciesReference
stoichiometry: 1.0
species: COPASI15

COPASI61
type: Parameter
constant: true
value: 10.6
name: kminusH2

COPASI88
type: Reaction
kinetic law: 980094
product: 980081
reactant: 980069
reactant: 980057
fast: false
reversible: false
name: Annihilation2

980081
type: SpeciesReference
stoichiometry: 1.0
species: COPASI13

980069
type: SpeciesReference
stoichiometry: 1.0
species: COPASI8

980057
type: SpeciesReference
stoichiometry: 1.0
species: COPASI3

COPASI90
type: Reaction
kinetic law: 980202
product: 980190
product: 980178
reactant: 980166
reactant: 980154
fast: false
reversible: false
name: Inhibition1

980190
type: SpeciesReference
stoichiometry: 1.0
species: COPASI13

980178
type: SpeciesReference
stoichiometry: 1.0
species: COPASI2

980166
type: SpeciesReference
stoichiometry: 1.0
species: COPASI8

980154
type: SpeciesReference
stoichiometry: 1.0
species: COPASI9

COPASI46
type: Parameter
constant: true
value: 1.04E-8
name: RNaseHtot

COPASI96
type: Reaction
kinetic law: 980515
product: 980503
product: 980491
product: 980479
reactant: 980467
fast: false
reversible: false
name: RNAPcat1

980503
type: SpeciesReference
stoichiometry: 1.0
species: COPASI7

980491
type: SpeciesReference
stoichiometry: 1.0
species: COPASI9

980479
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

980467
type: SpeciesReference
stoichiometry: 1.0
species: COPASI16

COPASI42
type: Parameter
constant: true
value: 3.0E-7
name: A1tot

COPASI123
type: Reaction
kinetic law: 981951
product: 981939
product: 981927
reactant: 981915
reactant: 981903
fast: false
reversible: false
name: sI1annihilation

981939
type: SpeciesReference
stoichiometry: 1.0
species: COPASI36

981927
type: SpeciesReference
stoichiometry: 1.0
species: COPASI11

981915
type: SpeciesReference
stoichiometry: 1.0
species: COPASI30

981903
type: SpeciesReference
stoichiometry: 1.0
species: COPASI7

COPASI82
type: Parameter
constant: true
value: 0.62
name: ksminus2

COPASI84
type: Parameter
constant: true
value: 0.59
name: ksminus3

COPASI114
type: Reaction
kinetic law: 981469
product: 981457
reactant: 981445
reactant: 981433
fast: false
reversible: false
name: sI2activation

981457
type: SpeciesReference
stoichiometry: 1.0
species: COPASI28

981445
type: SpeciesReference
stoichiometry: 1.0
species: COPASI27

981433
type: SpeciesReference
stoichiometry: 1.0
species: COPASI2

COPASI111
type: Reaction
kinetic law: 981324
product: 981312
product: 981299
product: 981287
reactant: 981275
fast: false
reversible: false
name: RNAPcat7

981312
type: SpeciesReference
stoichiometry: 1.0
species: COPASI7

981299
type: SpeciesReference
stoichiometry: 1.0
species: COPASI28

981287
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

981275
type: SpeciesReference
stoichiometry: 1.0
species: COPASI29

COPASI102
type: Reaction
kinetic law: 980840
product: 980828
product: 980816
reactant: 980803
fast: false
reversible: false
name: RNaseHcat1

980828
type: SpeciesReference
stoichiometry: 1.0
species: COPASI30

980816
type: SpeciesReference
stoichiometry: 1.0
species: COPASI15

980803
type: SpeciesReference
stoichiometry: 1.0
species: COPASI20

COPASI119
type: Reaction
kinetic law: 981746
product: 981734
product: 981722
product: 981710
reactant: 981698
fast: false
reversible: false
name: RNAPcat9

981734
type: SpeciesReference
stoichiometry: 1.0
species: COPASI8

981722
type: SpeciesReference
stoichiometry: 1.0
species: COPASI34

981710
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

981698
type: SpeciesReference
stoichiometry: 1.0
species: COPASI38

COPASI54
type: Parameter
constant: true
value: 1.0E8
name: kplus

COPASI105
type: Reaction
kinetic law: 980999
product: 980987
product: 980974
reactant: 980962
reactant: 980950
fast: false
reversible: false
name: Inhibition3

980987
type: SpeciesReference
stoichiometry: 1.0
species: COPASI32

980974
type: SpeciesReference
stoichiometry: 1.0
species: COPASI22

980962
type: SpeciesReference
stoichiometry: 1.0
species: COPASI6

980950
type: SpeciesReference
stoichiometry: 1.0
species: COPASI23

COPASI19
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 171344
name: RNAPT23

COPASI48
type: Parameter
constant: true
value: 3940.0
name: kTA12

COPASI107
type: Reaction
kinetic law: 981095
product: 981083
reactant: 981071
reactant: 981059
fast: false
reversible: true
name: RNAPbinding6

981083
type: SpeciesReference
stoichiometry: 1.0
species: COPASI19

981071
type: SpeciesReference
stoichiometry: 1.0
species: COPASI22

981059
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI99
type: Reaction
kinetic law: 980695
product: 980683
product: 980671
product: 980659
reactant: 980647
fast: false
reversible: false
name: RNAPcat4

980683
type: SpeciesReference
stoichiometry: 1.0
species: COPASI8

980671
type: SpeciesReference
stoichiometry: 1.0
species: COPASI22

980659
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

980647
type: SpeciesReference
stoichiometry: 1.0
species: COPASI19

COPASI78
type: Parameter
constant: true
value: 0.0
name: rI2init

COPASI57
type: Parameter
constant: true
value: 130.0
name: kminusOFF12

COPASI59
type: Parameter
constant: true
value: 109.0
name: kminusOFF23

COPASI93
type: Reaction
kinetic law: 980359
product: 980347
reactant: 980335
reactant: 980323
fast: false
reversible: true
name: RNAPbinding2

980347
type: SpeciesReference
stoichiometry: 1.0
species: COPASI24

980335
type: SpeciesReference
stoichiometry: 1.0
species: COPASI10

980323
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI87
type: Reaction
kinetic law: 980045
product: 980033
reactant: 980020
reactant: 980008
fast: false
reversible: false
name: Annihilation1

980033
type: SpeciesReference
stoichiometry: 1.0
species: COPASI11

980020
type: SpeciesReference
stoichiometry: 1.0
species: COPASI7

980008
type: SpeciesReference
stoichiometry: 1.0
species: COPASI5

COPASI66
type: Parameter
constant: true
value: 0.085
name: kcatH1

COPASI70
type: Parameter
constant: true
value: 13.5
name: kminusON31

COPASI45
type: Parameter
constant: true
value: 8.34E-8
name: RNAPtot

COPASI95
type: Reaction
kinetic law: 980455
product: 980443
reactant: 980431
reactant: 980419
fast: false
reversible: true
name: RNAPbinding4

980443
type: SpeciesReference
stoichiometry: 1.0
species: COPASI25

980431
type: SpeciesReference
stoichiometry: 1.0
species: COPASI4

980419
type: SpeciesReference
stoichiometry: 1.0
species: COPASI14

COPASI47
type: Parameter
constant: true
value: 3330.0
name: kTA23

COPASI72
type: Parameter
constant: true
value: 0.078
name: kcatON31

COPASI51
type: Parameter
constant: true
value: 6350.0
name: kTAI23

COPASI53
type: Parameter
constant: true
value: 6430.0
name: kAI3

COPASI75
type: Parameter
constant: true
value: 4120.0
name: ksplus1