MODEL1007060000
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reaction: 302401
species: 300492
reaction: 302515
species: 301142
species: 301374
reaction: 303428
reaction: 304217
reaction: 302820
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reaction: 304409
reaction: 303131
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reaction: 303755
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reaction: 304430
reaction: 304199
reaction: 303275
reaction: 302828
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species: 301733
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reaction: 302227
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reaction: 304697
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reaction: 303629
reaction: 302430
reaction: 303593
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reaction: 302187
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units def: 756683
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reaction: 302362
reaction: 302065
reaction: 304124
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units def: 756659
reaction: 304766
reaction: 304469
reaction: 302123
reaction: 303662
reaction: 303995

301531
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name: Selenophosphate_H2O3PSe

299929
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size: NaN
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302401
type: Reaction
product: 770604
reactant: 770567
product: 770616
notes: Abbreviation: R_PYAM5PO EC Number: 1.4.3.5 SUBSYSTEM: Cofactors_VitB6Metabolism Equation: M_h2o[c] + M_o2[c] + M_pyam5p[c] --> M_h2o2[c] + M_nh4[c] + M_pydx5p[c] genes: LOCUS:PF14_0570# proteins: GENE ASSOCIATION: (PF14_0570)
name: pyridoxal_5'-phosphate_synthase
reversible: false
product: 770628
fast: false
kinetic law: 770640
reactant: 770580
reactant: 770592

770604
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species: 300895

300895
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name: Hydrogen_peroxide_H2O2

770567
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300903
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name: H2O_H2O

770616
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species: 301160

301160
type: Species
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initial concentration: NaN
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name: Ammonium_H4N

770628
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species: 301483

301483
type: Species
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initial concentration: NaN
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name: Pyridoxal_5_phosphate_C8H8NO6P

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756646
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306323
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756586
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306320
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770580
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species: 301186

301186
type: Species
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initial concentration: NaN
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name: O2_O2

770592
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species: 301477

301477
type: Species
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initial concentration: NaN
initial amount: NaN
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name: Pyridoxamine_5_phosphate_C8H12N2O5P

300492
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boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Citrate_C6H5O7

299933
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0

302515
type: Reaction
kinetic law: 772297
product: 772285
reactant: 772273
notes: Abbreviation: R_EX_g6p_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_g6p <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_g6p_e_

306529
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value: 0.0

306528
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value: 0.0

306527
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value: 999999.0

306525
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value: -999999.0

772285
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species: 301840

301840
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Glucose_6_phosphate_C6H11O9P

299931
type: Compartment
constant: true
size: NaN
spatial dimensions: 3.0

772273
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species: 300785

300785
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Glucose_6_phosphate_C6H11O9P

301142
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

301374
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Phenylalanine_C9H11NO2

303428
type: Reaction
name: phospholipase_A2
product: 792386
product: 792398
product: 792410
reactant: 792374
reversible: false
reactant: 792362
notes: Abbreviation: R_PLIPA2E161pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pe161[c] --> M_1agpe161[c] + M_h[c] + M_hdcea[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
kinetic law: 792422
fast: false

792386
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species: 299978

299978
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
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name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C161_C21H42NO7P1

792398
type: SpeciesReference
stoichiometry: 1.0
species: 300911

300911
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: H_H

792410
type: SpeciesReference
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species: 300939

300939
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Hexadecenoate_n_C161_C16H29O2

792374
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species: 301322

301322
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: phosphatidylethanolamine_dihexadec_9enoyl_n_C161_C37H70N1O8P1

792362
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species: 300903

308154
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value: 0.0

308152
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308151
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value: 999999.0

308149
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value: 0.0

304217
type: Reaction
kinetic law: 808857
product: 808845
reactant: 808833
notes: Abbreviation: R_UREAt EC Number: SUBSYSTEM: Transport Equation: M_urea[e] <==> M_urea[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_UREAt

309633
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value: 0.0

309631
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value: 0.0

309630
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value: 999999.0

309628
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units: 756574
value: -999999.0

808845
type: SpeciesReference
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species: 301733

301733
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Urea_CH4N2O

808833
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species: 301735

301735
type: Species
constant: false
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has only substance units: false
initial concentration: NaN
initial amount: NaN
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name: Urea_CH4N2O

302820
type: Reaction
kinetic law: 777687
fast: false
notes: Abbreviation: R_3OAR60_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ohexACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hhexACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777627
product: 777675
reactant: 777639
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
reactant: 777651
product: 777663
reversible: true

307068
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value: 0.0

307066
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307065
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value: 999999.0

307064
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value: -999999.0

777627
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species: 300176

300176
type: Species
constant: false
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initial concentration: NaN
initial amount: NaN
in compartment: 299935

299935
type: Compartment
constant: true
size: NaN
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777675
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species: 301140

301140
type: Species
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initial concentration: NaN
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777639
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species: 300909

300909
type: Species
constant: false
boundary condition: false
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initial concentration: NaN
initial amount: NaN
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name: H_H

777651
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species: 301146

301146
type: Species
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initial concentration: NaN
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777663
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species: 300136

300136
type: Species
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301713
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initial concentration: NaN
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name: L_Tyrosyl_tRNA_Tyr_C9H10NO2R

300178
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initial concentration: NaN
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304706
type: Reaction
kinetic law: 816229
product: 816217
reactant: 816205
notes: Abbreviation: R_OROTtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_orot[m] <==> M_orot[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_OROTtmt

310529
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units: 756622
value: 0.0

310528
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value: 0.0

310526
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units: 756574
value: 999999.0

310525
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value: -999999.0

816217
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stoichiometry: 1.0
species: 301254

301254
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Orotate_C5H3N2O4

816205
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species: 301256

301256
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Orotate_C5H3N2O4

304409
type: Reaction
kinetic law: 811980
product: 811968
reactant: 811956
notes: Abbreviation: R_COA7tap EC Number: SUBSYSTEM: Transport_AP Equation: M_tdecoa[ap] <==> M_tdecoa[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_COA7tap

309985
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units: 756622
value: 0.0

309983
type: LocalParameter
value: 0.0

309982
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units: 756574
value: 999999.0

309980
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units: 756574
value: -999999.0

811968
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stoichiometry: 1.0
species: 301599

301599
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
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in compartment: 299929

811956
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species: 301597

301597
type: Species
constant: false
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has only substance units: false
initial concentration: NaN
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in compartment: 299935

303131
type: Reaction
fast: false
reactant: 785206
product: 785230
kinetic law: 785255
reactant: 785218
notes: Abbreviation: R_2_1_1_103 EC Number: 2.1.1.103 SUBSYSTEM: AminoAcids_MetPolyamineMetabolism ; Lipids_PhosphatidylcholineMetabolism Equation: M[e] thamp[c] + (3) M_ametam[c] <==> M[c] holp[c] + (3) M_ahcys[c] genes: proteins: GENE ASSOCIATION:
name: phosphoethanolamine_N-methyltransferase
product: 785243
reversible: true

785206
type: SpeciesReference
stoichiometry: 1.0
species: 300705

300705
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Ethanolamine_phosphate_C2H7NO4P

785230
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species: 300478

300478
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Choline_phosphate_C5H13NO4P

307607
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units: 756622
value: 0.0

307605
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value: 0.0

307604
type: LocalParameter
units: 756574
value: 999999.0

307602
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units: 756574
value: -999999.0

785218
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stoichiometry: 3.0
species: 300366

300366
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: S_Adenosylmethioninamine_C14H24N6O3S

785243
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stoichiometry: 3.0
species: 300336

300336
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: S_Adenosyl_L_homocysteine_C14H20N6O5S

304670
type: Reaction
kinetic law: 815794
product: 815782
reactant: 815770
notes: Abbreviation: R_GTHRDtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_gthrd[m] <==> M_gthrd[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_GTHRDtmt

310463
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units: 756622
value: 0.0

310462
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value: 0.0

310460
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310459
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units: 756574
value: -999999.0

815782
type: SpeciesReference
stoichiometry: 1.0
species: 300879

300879
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Reduced_glutathione_C10H16N3O6S

815770
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stoichiometry: 1.0
species: 300883

300883
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Reduced_glutathione_C10H16N3O6S

300464
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constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

300827
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: L_Glutamate_C5H8NO4

303944
type: Reaction
product: 803721
kinetic law: 803757
reactant: 803696
notes: Abbreviation: R_DUTPDP EC Number: 3.6.1.23 SUBSYSTEM: Nucleotides_PyrimidineMetabolism Equation: M_dutp[c] + M_h2o[c] --> M_dump[c] + M_h[c] + M_ppi[c] genes: LOCUS:PF11_0282# proteins: GENE ASSOCIATION: (PF11_0282)
reactant: 803708
fast: false
name: dUTP_diphosphatase
product: 803733
reversible: false
product: 803745

803721
type: SpeciesReference
stoichiometry: 1.0
species: 300684

300684
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dUMP_C9H11N2O8P

309132
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units: 756622
value: 0.0

309131
type: LocalParameter
value: 0.0

309129
type: LocalParameter
units: 756574
value: 999999.0

309128
type: LocalParameter
units: 756574
value: 0.0

803696
type: SpeciesReference
stoichiometry: 1.0
species: 300690

300690
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dUTP_C9H11N2O14P3

803708
type: SpeciesReference
stoichiometry: 1.0
species: 300903

803733
type: SpeciesReference
stoichiometry: 1.0
species: 300911

803745
type: SpeciesReference
stoichiometry: 1.0
species: 301416

301416
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Diphosphate_HO7P2

301495
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Pyruvate_C3H3O3

302494
type: Reaction
kinetic law: 772041
product: 772029
reactant: 772017
notes: Abbreviation: R_EX_fe2_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_fe2 <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_fe2_e_

306494
type: LocalParameter
units: 756622
value: 0.0

306493
type: LocalParameter
value: 0.0

306492
type: LocalParameter
units: 756574
value: 999999.0

306490
type: LocalParameter
units: 756574
value: -999999.0

772029
type: SpeciesReference
stoichiometry: 1.0
species: 301826

301826
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Fe2_Fe

772017
type: SpeciesReference
stoichiometry: 1.0
species: 300725

300725
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Fe2_Fe

303755
type: Reaction
product: 799629
fast: false
notes: Abbreviation: R_NTD10pp EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_h2o[c] + M_xmp[c] --> M_pi[c] + M_xtsn[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
kinetic law: 799641
reactant: 799605
reversible: false
name: 5'-nucleotidase
product: 799617
reactant: 799593

799629
type: SpeciesReference
stoichiometry: 1.0
species: 301763

301763
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Xanthosine_C10H12N4O6

308786
type: LocalParameter
units: 756622
value: 0.0

308784
type: LocalParameter
value: 0.0

308783
type: LocalParameter
units: 756574
value: 999999.0

308781
type: LocalParameter
units: 756574
value: 0.0

799605
type: SpeciesReference
stoichiometry: 1.0
species: 301753

301753
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Xanthosine_5_phosphate_C10H11N4O9P

799617
type: SpeciesReference
stoichiometry: 1.0
species: 301390

301390
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphate_HO4P

799593
type: SpeciesReference
stoichiometry: 1.0
species: 300903

302897
type: Reaction
reversible: false
product: 779621
notes: Abbreviation: R_EAR160x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_tpalm2eACP[ap] --> M_nad[ap] + M_palmACP[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
fast: false
reactant: 779609
product: 779633
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
reactant: 779585
reactant: 779597
kinetic law: 779645

779621
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stoichiometry: 1.0
species: 301128

301128
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779609
type: SpeciesReference
stoichiometry: 1.0
species: 301635

301635
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779633
type: SpeciesReference
stoichiometry: 1.0
species: 301292

301292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Palmitoyl_ACP_n_C160ACP_C27H51N2O8PRS

779585
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779597
type: SpeciesReference
stoichiometry: 1.0
species: 301134

301134
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

307200
type: LocalParameter
units: 756622
value: 0.0

307198
type: LocalParameter
value: 0.0

307197
type: LocalParameter
units: 756574
value: 999999.0

307196
type: LocalParameter
units: 756574
value: 0.0

303398
type: Reaction
kinetic law: 791699
fast: false
product: 791663
notes: Abbreviation: R_PLIPA2A140pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa140[c] --> M_1tdecg3p[c] + M_h[c] + M_ttdca[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
name: phospholipase_A2
product: 791687
reactant: 791638
reactant: 791650
product: 791675
reversible: false

308099
type: LocalParameter
units: 756622
value: 0.0

308097
type: LocalParameter
value: 0.0

308096
type: LocalParameter
units: 756574
value: 999999.0

308094
type: LocalParameter
units: 756574
value: 0.0

791663
type: SpeciesReference
stoichiometry: 1.0
species: 300026

300026
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_tetradecanoyl_sn_glycerol_3_phosphate_C17H33O7P1

791687
type: SpeciesReference
stoichiometry: 1.0
species: 301697

301697
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tetradecanoate_n_C140_C14H27O2

791638
type: SpeciesReference
stoichiometry: 1.0
species: 300903

791650
type: SpeciesReference
stoichiometry: 1.0
species: 301268

301268
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_ditetradecanoyl_sn_glycerol_3_phosphate_C31H59O8P1

791675
type: SpeciesReference
stoichiometry: 1.0
species: 300911

301781
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Adenosine_C10H13N5O4

302409
type: Reaction
fast: false
product: 770820
reversible: false
notes: Abbreviation: R_PYDXNK EC Number: 2.7.1.35 SUBSYSTEM: Cofactors_VitB6Metabolism Equation: M_atp[c] + M_pydxn[c] --> M_adp[c] + M_h[c] + M_pdx5p[c] genes: LOCUS:PFF0775w# proteins: GENE ASSOCIATION: (PFF0775w)
product: 770832
product: 770844
name: pyridoxal_kinase
kinetic law: 770856
reactant: 770808
reactant: 770796

770820
type: SpeciesReference
stoichiometry: 1.0
species: 300332

300332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: ADP_C10H12N5O10P2

770832
type: SpeciesReference
stoichiometry: 1.0
species: 300911

770844
type: SpeciesReference
stoichiometry: 1.0
species: 301304

301304
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Pyridoxine_5_phosphate_C8H10NO6P

306339
type: LocalParameter
units: 756622
value: 0.0

306338
type: LocalParameter
value: 0.0

306337
type: LocalParameter
units: 756574
value: 999999.0

306335
type: LocalParameter
units: 756574
value: 0.0

770808
type: SpeciesReference
stoichiometry: 1.0
species: 301489

301489
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Pyridoxine_C8H11NO3

770796
type: SpeciesReference
stoichiometry: 1.0
species: 300414

300414
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: ATP_C10H12N5O13P3

303833
type: Reaction
notes: Abbreviation: R_PDE5 EC Number: 3.1.4.17 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_35ccmp[c] + M_h2o[c] --> M[c] mp[c] + M_h[c] genes: LOCUS:MAL13P1_118# LOCUS:MAL13P1_119# LOCUS:PF14_0672# LOCUS:PFL0475w# proteins: GENE ASSOCIATION: (MAL13P1_118) or (MAL13P1_119) or (PF14_0672) or (PFL0475w)
reactant: 801163
fast: false
reactant: 801175
product: 801187
kinetic law: 801211
reversible: false
name: 3',5'-cyclic-nucleotide_phosphodiesterase
product: 801199

801163
type: SpeciesReference
stoichiometry: 1.0
species: 300106

300106
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_5_Cyclic_CMP_C9H11N3O7P

801175
type: SpeciesReference
stoichiometry: 1.0
species: 300903

801187
type: SpeciesReference
stoichiometry: 1.0
species: 300510

300510
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: CMP_C9H12N3O8P

308929
type: LocalParameter
units: 756622
value: 0.0

308927
type: LocalParameter
value: 0.0

308926
type: LocalParameter
units: 756574
value: 999999.0

308924
type: LocalParameter
units: 756574
value: 0.0

801199
type: SpeciesReference
stoichiometry: 1.0
species: 300911

300242
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 5_Amino_4_oxopentanoate_C5H9NO3

300050
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoglycerol_n_C160_C22H44O9P1

300713
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933

299988
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoglycerol_n_C141_C20H38O9P1

301392
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Phosphate_HO4P

302293
type: Reaction
kinetic law: 767607
notes: Abbreviation: R_ALAS_mt EC Number: 2.3.1.37 SUBSYSTEM: AminoAcids_GlySerMetabolism ; Cofactors_PorphyrinMetabolism Equation: M_gly[m] + M_h[m] + M_succoa[m] --> M_5aop[m] + M[c] o2[m] + M[c] oa[m] genes: LOCUS:PFL2210w# proteins: GENE ASSOCIATION: (PFL2210w)
fast: false
reactant: 767547
name: 5-aminolevulinate_synthase
product: 767595
product: 767583
reactant: 767535
reversible: false
reactant: 767559
product: 767571

306094
type: LocalParameter
units: 756622
value: 0.0

306093
type: LocalParameter
value: 0.0

306092
type: LocalParameter
units: 756574
value: 999999.0

306090
type: LocalParameter
units: 756574
value: 0.0

767547
type: SpeciesReference
stoichiometry: 1.0
species: 300915

300915
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: H_H

767595
type: SpeciesReference
stoichiometry: 1.0
species: 300524

300524
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Coenzyme_A_C21H32N7O16P3S

767583
type: SpeciesReference
stoichiometry: 1.0
species: 300518

300518
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: CO2_CO2

767535
type: SpeciesReference
stoichiometry: 1.0
species: 300845

300845
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Glycine_C2H5NO2

767559
type: SpeciesReference
stoichiometry: 1.0
species: 301569

301569
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Succinyl_CoA_C25H35N7O19P3S

767571
type: SpeciesReference
stoichiometry: 1.0
species: 300248

300248
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 5_Amino_4_oxopentanoate_C5H9NO3

304736
type: Reaction
kinetic law: 816594
product: 816582
reactant: 816570
notes: Abbreviation: R_MET_SLV EC Number: SUBSYSTEM: AminoAcids_MetPolyamineMetabolism Equation: M_5mtr1p[c] --> M[m] et_L[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: false
name: R_MET_SLV

310584
type: LocalParameter
units: 756622
value: 0.0

310583
type: LocalParameter
value: 0.0

310581
type: LocalParameter
units: 756574
value: 999999.0

310580
type: LocalParameter
units: 756574
value: 0.0

816582
type: SpeciesReference
stoichiometry: 1.0
species: 301084

301084
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Methionine_C5H11NO2S

816570
type: SpeciesReference
stoichiometry: 1.0
species: 300256

300256
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_methylthio_d_ribose_1_phosphate_C6H13O7PS

304430
type: Reaction
kinetic law: 812259
product: 812247
reactant: 812235
notes: Abbreviation: R_DMPPtap EC Number: SUBSYSTEM: Transport_AP Equation: M_dmpp[ap] <==> M_dmpp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_DMPPtap

310023
type: LocalParameter
units: 756622
value: 0.0

310022
type: LocalParameter
value: 0.0

310020
type: LocalParameter
units: 756574
value: 999999.0

310019
type: LocalParameter
units: 756574
value: -999999.0

812247
type: SpeciesReference
stoichiometry: 1.0
species: 300642

300642
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dimethylallyl_diphosphate_C5H9O7P2

812235
type: SpeciesReference
stoichiometry: 1.0
species: 300640

300640
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Dimethylallyl_diphosphate_C5H9O7P2

304199
type: Reaction
fast: false
product: 808543
notes: Abbreviation: R_SO4HCOtex EC Number: SUBSYSTEM: Transport Equation: (2.0) M_hco3[c] + M_so4[e] --> (2.0) M_hco3[e] + M_so4[c] genes: proteins: GENE ASSOCIATION:
kinetic law: 808567
name: R_SO4HCOtex
reversible: false
reactant: 808519
product: 808555
reactant: 808531

808543
type: SpeciesReference
stoichiometry: 2.0
species: 300925

300925
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Bicarbonate_CHO3

309600
type: LocalParameter
units: 756622
value: 0.0

309598
type: LocalParameter
value: 0.0

309597
type: LocalParameter
units: 756574
value: 999999.0

309595
type: LocalParameter
units: 756574
value: 0.0

808519
type: SpeciesReference
stoichiometry: 2.0
species: 300923

300923
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Bicarbonate_CHO3

808555
type: SpeciesReference
stoichiometry: 1.0
species: 301545

301545
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Sulfate_O4S

808531
type: SpeciesReference
stoichiometry: 1.0
species: 301547

301547
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Sulfate_O4S

303275
type: Reaction
reactant: 788583
name: lysophospholipase
kinetic law: 788643
reactant: 788595
notes: Abbreviation: R_LPLIPAL1A141pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1tdec7eg3p[c] + M_h2o[c] --> M_glyc3p[c] + M_h[c] + M_ttdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 788607
product: 788631
reversible: false
product: 788619
fast: false

788583
type: SpeciesReference
stoichiometry: 1.0
species: 300022

300022
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_tetradec_7_enoyl_sn_glycerol_3_phosphate_C17H31O7P1

307868
type: LocalParameter
units: 756622
value: 0.0

307866
type: LocalParameter
value: 0.0

307865
type: LocalParameter
units: 756574
value: 999999.0

307863
type: LocalParameter
units: 756574
value: 0.0

788595
type: SpeciesReference
stoichiometry: 1.0
species: 300903

788607
type: SpeciesReference
stoichiometry: 1.0
species: 300851

300851
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Glycerol_3_phosphate_C3H7O6P

788631
type: SpeciesReference
stoichiometry: 1.0
species: 301703

301703
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tetradecenoate_n_C141_C14H25O2

788619
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302828
type: Reaction
product: 777917
notes: Abbreviation: R_3OAS120_ap EC Number: 2.3.1.41 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_dcaACP[ap] + M_h[ap] + M[m] alACP[ap] --> M_3oddecACP[ap] + M_ACP[ap] + M[c] o2[ap] genes: LOCUS:PFB0505c# LOCUS:PFF1275c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFF1275c)
kinetic law: 777929
reactant: 777869
reactant: 777881
name: beta-ketoacyl-acyl-carrier-protein_synthase_I
fast: false
reversible: false
reactant: 777857
product: 777893
product: 777905

777917
type: SpeciesReference
stoichiometry: 1.0
species: 300512

300512
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: CO2_CO2

307083
type: LocalParameter
units: 756622
value: 0.0

307081
type: LocalParameter
value: 0.0

307080
type: LocalParameter
units: 756574
value: 999999.0

307079
type: LocalParameter
units: 756574
value: 0.0

777869
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777881
type: SpeciesReference
stoichiometry: 1.0
species: 301062

301062
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777857
type: SpeciesReference
stoichiometry: 1.0
species: 300564

300564
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Decanoyl_ACP_n_C100ACP_C21H39N2O8PRS

777893
type: SpeciesReference
stoichiometry: 1.0
species: 300168

300168
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777905
type: SpeciesReference
stoichiometry: 1.0
species: 300270

300270
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: acyl_carrier_protein_C11H21N2O7PRS

300600
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dodecanoyl_CoA_n_C120CoA_C33H54N7O17P3S

300196
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_O_1_Carboxyvinyl_3_phosphoshikimate_C10H9O10P

302227
type: Reaction
reactant: 765135
fast: false
product: 765184
name: Phosphoenolpyruvate_carboxykinase_(ATP)
reactant: 765147
kinetic law: 765196
product: 765172
reversible: false
notes: Abbreviation: R_PPCK EC Number: 4.1.1.49 SUBSYSTEM: Carbohydrates_PyruvateMetabolism Equation: M_atp[c] + M_oaa[c] --> M_adp[c] + M[c] o2[c] + M_pep[c] genes: LOCUS:PF13_0234# proteins: GENE ASSOCIATION: (PF13_0234)
product: 765159

765135
type: SpeciesReference
stoichiometry: 1.0
species: 300414

765184
type: SpeciesReference
stoichiometry: 1.0
species: 301344

301344
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphoenolpyruvate_C3H2O6P

765147
type: SpeciesReference
stoichiometry: 1.0
species: 301198

301198
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Oxaloacetate_C4H2O5

305899
type: LocalParameter
units: 756622
value: 0.0

305896
type: LocalParameter
value: 0.0

305893
type: LocalParameter
units: 756574
value: 999999.0

305890
type: LocalParameter
units: 756574
value: 0.0

765172
type: SpeciesReference
stoichiometry: 1.0
species: 300514

300514
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: CO2_CO2

765159
type: SpeciesReference
stoichiometry: 1.0
species: 300332

300114
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_5_Cyclic_IMP_C10H10N4O7P

300400
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Asparagine_C4H8N2O3

303515
type: Reaction
kinetic law: 794479
reactant: 794431
fast: false
notes: Abbreviation: R_PGPP140pp EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp140[c] --> M_pg140[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
product: 794455
reversible: false
name: phosphatidylglycerophosphatase
product: 794467
reactant: 794443

308313
type: LocalParameter
units: 756622
value: 0.0

308312
type: LocalParameter
value: 0.0

308310
type: LocalParameter
units: 756574
value: 999999.0

308309
type: LocalParameter
units: 756574
value: 0.0

794431
type: SpeciesReference
stoichiometry: 1.0
species: 300903

794455
type: SpeciesReference
stoichiometry: 1.0
species: 301348

301348
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_ditetradecanoyl_n_C140_C34H66O10P1

794467
type: SpeciesReference
stoichiometry: 1.0
species: 301390

794443
type: SpeciesReference
stoichiometry: 1.0
species: 301362

301362
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_ditetradecanoyl_n_C140_C34H65O13P2

304697
type: Reaction
kinetic law: 816120
product: 816108
reactant: 816096
notes: Abbreviation: R_O2tmt EC Number: SUBSYSTEM: Transport_MT Equation: M_o2[m] <==> M_o2[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_O2tmt

310513
type: LocalParameter
units: 756622
value: 0.0

310511
type: LocalParameter
value: 0.0

310510
type: LocalParameter
units: 756574
value: 999999.0

310508
type: LocalParameter
units: 756574
value: -999999.0

816108
type: SpeciesReference
stoichiometry: 1.0
species: 301186

816096
type: SpeciesReference
stoichiometry: 1.0
species: 301190

301190
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: O2_O2

301056
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha-D-Mannosyl)6-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol

303200
type: Reaction
name: Phosphatidylserine_decarboxylase
product: 786854
kinetic law: 786879
reversible: false
reactant: 786830
notes: Abbreviation: R_PSD141 EC Number: 4.1.1.65 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_h[c] + M_ps141[c] --> M[c] o2[c] + M_pe141[c] genes: LOCUS:PFI1370c# proteins: GENE ASSOCIATION: (PFI1370c)
product: 786867
fast: false
reactant: 786842

786854
type: SpeciesReference
stoichiometry: 1.0
species: 300514

307731
type: LocalParameter
units: 756622
value: 0.0

307730
type: LocalParameter
value: 0.0

307728
type: LocalParameter
units: 756574
value: 999999.0

307727
type: LocalParameter
units: 756574
value: 0.0

786830
type: SpeciesReference
stoichiometry: 1.0
species: 300911

786867
type: SpeciesReference
stoichiometry: 1.0
species: 301314

301314
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: phosphatidylethanolamine_ditetradec_7_enoyl_n_C141_C33H62N1O8P1

786842
type: SpeciesReference
stoichiometry: 1.0
species: 301448

301448
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

303629
type: Reaction
reactant: 796988
name: lysophospholipase
reactant: 796976
product: 797012
notes: Abbreviation: R_LPLIPAL2ATE181 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpe181[c] + M_pg181[c] --> M[ap] g181[c] + M_g3pe[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
fast: false
kinetic law: 797024
reversible: false
product: 797000

796988
type: SpeciesReference
stoichiometry: 1.0
species: 301358

301358
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_dioctadec_11_enoyl_n_C181_C42H78O10P1

796976
type: SpeciesReference
stoichiometry: 1.0
species: 300042

300042
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoethanolamine_n_C181_C23H46NO7P1

797012
type: SpeciesReference
stoichiometry: 1.0
species: 300775

300775
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: sn_Glycero_3_phosphoethanolamine_C5H14NO6P

308522
type: LocalParameter
units: 756622
value: 0.0

308521
type: LocalParameter
value: 0.0

308519
type: LocalParameter
units: 756574
value: 999999.0

308518
type: LocalParameter
units: 756574
value: 0.0

797000
type: SpeciesReference
stoichiometry: 1.0
species: 300388

300388
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: acyl_phosphatidylglycerol_n_C181_C60H110O11P

302430
type: Reaction
kinetic law: 771208
product: 771196
reactant: 771183
notes: Abbreviation: R_EX_ade_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_ade <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_ade_e_

306379
type: LocalParameter
units: 756622
value: 0.0

306378
type: LocalParameter
value: 0.0

306377
type: LocalParameter
units: 756574
value: 999999.0

306375
type: LocalParameter
units: 756574
value: -999999.0

771196
type: SpeciesReference
stoichiometry: 1.0
species: 301779

301779
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Adenine_C5H5N5

771183
type: SpeciesReference
stoichiometry: 1.0
species: 300324

300324
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Adenine_C5H5N5

303593
type: Reaction
fast: false
notes: Abbreviation: R_OCTDPS EC Number: SUBSYSTEM: Lipids_TerpenoidMetabolism Equation: M_frdp[c] + (5.0) M_ipdp[c] --> M_octdp[c] + (5.0) M_ppi[c] genes: proteins: GENE ASSOCIATION:
product: 796143
reactant: 796107
product: 796131
reversible: false
kinetic law: 796155
reactant: 796119
name: R_OCTDPS

796143
type: SpeciesReference
stoichiometry: 5.0
species: 301416

796107
type: SpeciesReference
stoichiometry: 1.0
species: 300751

300751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Farnesyl_diphosphate_C15H25O7P2

796131
type: SpeciesReference
stoichiometry: 1.0
species: 301232

301232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: all_trans_Octaprenyl_diphosphate_C40H65O7P2

308456
type: LocalParameter
units: 756622
value: 0.0

308455
type: LocalParameter
value: 0.0

308453
type: LocalParameter
units: 756574
value: 999999.0

308452
type: LocalParameter
units: 756574
value: 0.0

796119
type: SpeciesReference
stoichiometry: 5.0
species: 301018

301018
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Isopentenyl_diphosphate_C5H9O7P2

300262
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 6_hydroxymethyl_dihydropterin_pyrophosphate_C7H8N5O8P2

302187
type: Reaction
reversible: true
fast: false
product: 763893
name: glucose-6-phosphate_dehydrogenase
reactant: 763869
kinetic law: 763929
product: 763905
notes: Abbreviation: R_G6PDH2r EC Number: 1.1.1.49 SUBSYSTEM: Carbohydrates_PentosePhosphateCycle Equation: M_g6p[c] + M_nadp[c] <==> M_6pgl[c] + M_h[c] + M_nadph[c] genes: LOCUS:PF14_0511# proteins: GENE ASSOCIATION: (PF14_0511)
product: 763917
reactant: 763881

763893
type: SpeciesReference
stoichiometry: 1.0
species: 300266

300266
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 6_phospho_D_glucono_1_5_lactone_C6H9O9P

763869
type: SpeciesReference
stoichiometry: 1.0
species: 300783

300783
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Glucose_6_phosphate_C6H11O9P

305699
type: LocalParameter
units: 756622
value: 0.0

305696
type: LocalParameter
value: 0.0

305693
type: LocalParameter
units: 756574
value: 999999.0

305690
type: LocalParameter
units: 756574
value: -999999.0

763905
type: SpeciesReference
stoichiometry: 1.0
species: 300911

763917
type: SpeciesReference
stoichiometry: 1.0
species: 301148

301148
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

763881
type: SpeciesReference
stoichiometry: 1.0
species: 301142

300670
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: periplasmic_disulfide_isomerasethiol_disulphide_oxidase_oxidized_X

301991
type: Reaction
product: 756817
product: 756805
kinetic law: 756842
reactant: 756768
reactant: 756793
reversible: false
reactant: 756780
name: Arginine-tRNA_ligase
fast: false
product: 756829
notes: Abbreviation: R_ARGTRS EC Number: 6.1.1.19 SUBSYSTEM: AminoAcids_ArgProMetabolism Equation: M_arg_L[c] + M_atp[c] + M_trnaarg[c] --> M_amp[c] + M_argtrna[c] + M_ppi[c] genes: LOCUS:PFL0900c# proteins: GENE ASSOCIATION: (PFL0900c)

756817
type: SpeciesReference
stoichiometry: 1.0
species: 300396

300396
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Arginyl_tRNA_Arg_C6H14N4OR

756805
type: SpeciesReference
stoichiometry: 1.0
species: 300370

300370
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: AMP_C10H12N5O7P

304800
type: LocalParameter
units: 756622
value: 0.0

304797
type: LocalParameter
value: 0.0

304794
type: LocalParameter
units: 756574
value: 999999.0

304793
type: LocalParameter
units: 756574
value: 0.0

756768
type: SpeciesReference
stoichiometry: 1.0
species: 300392

300392
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Arginine_C6H15N4O2

756793
type: SpeciesReference
stoichiometry: 1.0
species: 301647

301647
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Arg_R

756780
type: SpeciesReference
stoichiometry: 1.0
species: 300414

756829
type: SpeciesReference
stoichiometry: 1.0
species: 301416

304574
type: Reaction
kinetic law: 814333
product: 814321
reactant: 814309
notes: Abbreviation: R_OCDCEAtr EC Number: SUBSYSTEM: Transport_lipid Equation: M_ocdcea[e] <==> M_ocdcea[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_OCDCEAtr

310287
type: LocalParameter
units: 756622
value: 0.0

310286
type: LocalParameter
value: 0.0

310284
type: LocalParameter
units: 756574
value: 999999.0

310283
type: LocalParameter
units: 756574
value: -999999.0

814321
type: SpeciesReference
stoichiometry: 1.0
species: 301220

301220
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: octadecenoate_n_C181_C18H33O2

814309
type: SpeciesReference
stoichiometry: 1.0
species: 301222

301222
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: octadecenoate_n_C181_C18H33O2

756683
type: SBMLUnitsDef
unit: 756695
name: mmole

756695
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

302935
type: Reaction
reactant: 780619
product: 780670
reactant: 780606
notes: Abbreviation: R_FACOAL180t2pp_ap EC Number: 6.2.1.3 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_SphingomyelinCeramideMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_atp[ap] + M[c] oa[ap] + M_ocdca[ap] --> M_amp[ap] + M_ppi[ap] + M_stcoa[ap] genes: LOCUS:MAL13P1_485# LOCUS:PF07_0129# LOCUS:PF14_0751# LOCUS:PF14_0761# LOCUS:PFB0685c# LOCUS:PFB0695c# LOCUS:PFC0050c# LOCUS:PFD0085c# LOCUS:PFE1250w# LOCUS:PFF0945c# LOCUS:PFL1880w# LOCUS:PFL2570w# proteins: GENE ASSOCIATION: (MAL13P1_485) or (PF07_0129) or (PF14_0751) or (PF14_0761) or (PFB0685c) or (PFB0695c) or (PFC0050c) or (PFD0085c) or (PFE1250w) or (PFF0945c) or (PFL1880w) or (PFL2570w)
product: 780645
product: 780658
kinetic law: 780682
reactant: 780632
name: Long-chain-fatty-acid-CoA_ligase
reversible: false
fast: false

780619
type: SpeciesReference
stoichiometry: 1.0
species: 300520

300520
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Coenzyme_A_C21H32N7O16P3S

780670
type: SpeciesReference
stoichiometry: 1.0
species: 301557

301557
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Stearoyl_CoA_n_C180CoA_C39H66N7O17P3S

780606
type: SpeciesReference
stoichiometry: 1.0
species: 300412

300412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: ATP_C10H12N5O13P3

780645
type: SpeciesReference
stoichiometry: 1.0
species: 300368

300368
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: AMP_C10H12N5O7P

780658
type: SpeciesReference
stoichiometry: 1.0
species: 301414

301414
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Diphosphate_HO7P2

307267
type: LocalParameter
units: 756622
value: 0.0

307265
type: LocalParameter
value: 0.0

307264
type: LocalParameter
units: 756574
value: 999999.0

307262
type: LocalParameter
units: 756574
value: 0.0

780632
type: SpeciesReference
stoichiometry: 1.0
species: 301212

301212
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: octadecanoate_n_C180_C18H35O2

303812
type: Reaction
reactant: 800739
product: 800763
kinetic law: 800787
fast: false
name: 5'-nucleotidase
reactant: 800751
reversible: false
notes: Abbreviation: R_NTD8pp EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_dgmp[c] + M_h2o[c] --> M_dgsn[c] + M_pi[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
product: 800775

800739
type: SpeciesReference
stoichiometry: 1.0
species: 300606

300606
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dGMP_C10H12N5O7P

800763
type: SpeciesReference
stoichiometry: 1.0
species: 300608

300608
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Deoxyguanosine_C10H13N5O4

308890
type: LocalParameter
units: 756622
value: 0.0

308889
type: LocalParameter
value: 0.0

308887
type: LocalParameter
units: 756574
value: 999999.0

308886
type: LocalParameter
units: 756574
value: 0.0

800751
type: SpeciesReference
stoichiometry: 1.0
species: 300903

800775
type: SpeciesReference
stoichiometry: 1.0
species: 301390

302362
type: Reaction
kinetic law: 769648
reactant: 769600
product: 769636
reversible: false
reactant: 769612
notes: Abbreviation: R_TMPK EC Number: 2.7.4.16 SUBSYSTEM: Cofactors_ThiamineMetabolism Equation: M_atp[c] + M_thmmp[c] --> M_adp[c] + M_thmpp[c] genes: proteins: GENE ASSOCIATION:
name: thiamine-phosphate_kinase
product: 769624
fast: false

306249
type: LocalParameter
units: 756622
value: 0.0

306248
type: LocalParameter
value: 0.0

306247
type: LocalParameter
units: 756574
value: 999999.0

306245
type: LocalParameter
units: 756574
value: 0.0

769600
type: SpeciesReference
stoichiometry: 1.0
species: 300414

769636
type: SpeciesReference
stoichiometry: 1.0
species: 301617

301617
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Thiamine_diphosphate_C12H16N4O7P2S

769612
type: SpeciesReference
stoichiometry: 1.0
species: 301615

301615
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Thiamin_monophosphate_C12H16N4O4PS

769624
type: SpeciesReference
stoichiometry: 1.0
species: 300332

302065
type: Reaction
reactant: 759754
name: Lysine-tRNA_ligase
notes: Abbreviation: R_LYSTRS EC Number: 6.1.1.6 SUBSYSTEM: AminoAcids_LysMetabolism Equation: M_atp[c] + M_lys_L[c] + M_trnalys[c] --> M_amp[c] + M_lystrna[c] + M_ppi[c] genes: LOCUS:PF13_0262# LOCUS:PF14_0166# proteins: GENE ASSOCIATION: (PF13_0262) or (PF14_0166)
product: 759814
reactant: 759766
product: 759790
reversible: false
reactant: 759778
fast: false
kinetic law: 759826
product: 759802

759754
type: SpeciesReference
stoichiometry: 1.0
species: 300414

759814
type: SpeciesReference
stoichiometry: 1.0
species: 301416

759766
type: SpeciesReference
stoichiometry: 1.0
species: 301046

301046
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Lysine_C6H15N2O2

759790
type: SpeciesReference
stoichiometry: 1.0
species: 300370

759778
type: SpeciesReference
stoichiometry: 1.0
species: 301667

301667
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Lys_R

305102
type: LocalParameter
units: 756622
value: 0.0

305099
type: LocalParameter
value: 0.0

305096
type: LocalParameter
units: 756574
value: 999999.0

305095
type: LocalParameter
units: 756574
value: 0.0

759802
type: SpeciesReference
stoichiometry: 1.0
species: 301050

301050
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Lysine_tRNA_Lys_C6H14N2OR

304124
type: Reaction
kinetic law: 807442
product: 807430
reactant: 807418
notes: Abbreviation: R_GLYCt EC Number: SUBSYSTEM: Transport Equation: M_glyc[c] <==> M_glyc[e] genes: LOCUS:PF11_0338# proteins: GENE ASSOCIATION: (PF11_0338)
fast: false
reversible: true
name: R_GLYCt

309462
type: LocalParameter
units: 756622
value: 0.0

309461
type: LocalParameter
value: 0.0

309459
type: LocalParameter
units: 756574
value: 999999.0

309458
type: LocalParameter
units: 756574
value: -999999.0

807430
type: SpeciesReference
stoichiometry: 1.0
species: 300857

300857
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Glycerol_C3H8O3

807418
type: SpeciesReference
stoichiometry: 1.0
species: 300855

300855
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Glycerol_C3H8O3

302440
type: Reaction
kinetic law: 771352
product: 771340
reactant: 771328
notes: Abbreviation: R_EX_arg_L_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_arg_L <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_arg_L_e_

306399
type: LocalParameter
units: 756622
value: 0.0

306398
type: LocalParameter
value: 0.0

306397
type: LocalParameter
units: 756574
value: 999999.0

306395
type: LocalParameter
units: 756574
value: -999999.0

771340
type: SpeciesReference
stoichiometry: 1.0
species: 301787

301787
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Arginine_C6H15N4O2

771328
type: SpeciesReference
stoichiometry: 1.0
species: 300394

300394
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Arginine_C6H15N4O2

301675
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_SeCys_R

300622
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 7_8_Dihydrofolate_C19H19N7O6

301182
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nitric_oxide_NO

303344
type: Reaction
reversible: false
kinetic law: 790391
fast: false
notes: Abbreviation: R_LPLIPAL2A180 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2odecg3p[c] + M_h2o[c] --> M_glyc3p[c] + (2.0) M_h[c] + M_ocdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 790367
product: 790355
product: 790379
reactant: 790343
reactant: 790331
name: lysophospholipase

308000
type: LocalParameter
units: 756622
value: 0.0

307998
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value: 0.0

307997
type: LocalParameter
units: 756574
value: 999999.0

307995
type: LocalParameter
units: 756574
value: 0.0

790367
type: SpeciesReference
stoichiometry: 2.0
species: 300911

790355
type: SpeciesReference
stoichiometry: 1.0
species: 300851

790379
type: SpeciesReference
stoichiometry: 1.0
species: 301214

301214
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: octadecanoate_n_C180_C18H35O2

790343
type: SpeciesReference
stoichiometry: 1.0
species: 300903

790331
type: SpeciesReference
stoichiometry: 1.0
species: 300082

300082
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_octadecanoyl_sn_glycerol_3_phosphate_C21H42O7P1

301076
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Mannose_1_phosphate_C6H11O9P

304001
type: Reaction
reactant: 805015
kinetic law: 805052
reversible: false
reactant: 805003
product: 805027
name: NADH_dehydrogenase
fast: false
notes: Abbreviation: R_NADH2_u6cm_mt EC Number: 1.6.99.3 SUBSYSTEM: Others_MitochondrialElectronFlow Equation: M_h[m] + M_nadh[m] + M_q8[m] --> M_nad[m] + M_q8h2[m] genes: LOCUS:PFI0735c# proteins: GENE ASSOCIATION: (PFI0735c)
reactant: 804991
product: 805039

805015
type: SpeciesReference
stoichiometry: 1.0
species: 301501

301501
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Ubiquinone_8_C49H74O4

309237
type: LocalParameter
units: 756622
value: 0.0

309235
type: LocalParameter
value: 0.0

309234
type: LocalParameter
units: 756574
value: 999999.0

309232
type: LocalParameter
units: 756574
value: 0.0

805003
type: SpeciesReference
stoichiometry: 1.0
species: 301138

301138
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933

805027
type: SpeciesReference
stoichiometry: 1.0
species: 301132

301132
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933

804991
type: SpeciesReference
stoichiometry: 1.0
species: 300915

805039
type: SpeciesReference
stoichiometry: 1.0
species: 301505

301505
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Ubiquinol_8_C49H76O4

756659
type: SBMLUnitsDef
unit: 756671
name: hours

756671
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 3600.0
kind: SECOND

304766
type: Reaction
kinetic law: 817235
product: 817223
reactant: 817211
notes: Abbreviation: R_AMPtap EC Number: SUBSYSTEM: Transport_AP Equation: M_amp[ap] <==> M_amp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_AMPtap

310639
type: LocalParameter
units: 756622
value: 0.0

310638
type: LocalParameter
value: 0.0

310636
type: LocalParameter
units: 756574
value: 999999.0

310635
type: LocalParameter
units: 756574
value: -999999.0

817223
type: SpeciesReference
stoichiometry: 1.0
species: 300370

817211
type: SpeciesReference
stoichiometry: 1.0
species: 300368

304469
type: Reaction
product: 812852
notes: Abbreviation: R_CGMPt EC Number: SUBSYSTEM: Transport_base Equation: M_35cgmp[c] + M_atp[c] + M_h2o[c] --> M_35cgmp[e] + M_adp[c] + M_h[c] + M_pi[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
reactant: 812816
product: 812864
reactant: 812804
fast: false
reversible: false
product: 812828
reactant: 812792
name: R_CGMPt
kinetic law: 812876
product: 812840

812852
type: SpeciesReference
stoichiometry: 1.0
species: 300911

812816
type: SpeciesReference
stoichiometry: 1.0
species: 300903

812864
type: SpeciesReference
stoichiometry: 1.0
species: 301390

812804
type: SpeciesReference
stoichiometry: 1.0
species: 300414

812828
type: SpeciesReference
stoichiometry: 1.0
species: 300112

300112
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 3_5_Cyclic_GMP_C10H11N5O7P

812792
type: SpeciesReference
stoichiometry: 1.0
species: 300110

300110
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_5_Cyclic_GMP_C10H11N5O7P

310095
type: LocalParameter
units: 756622
value: 0.0

310093
type: LocalParameter
value: 0.0

310092
type: LocalParameter
units: 756574
value: 999999.0

310090
type: LocalParameter
units: 756574
value: 0.0

812840
type: SpeciesReference
stoichiometry: 1.0
species: 300332

302123
type: Reaction
product: 761960
reactant: 761936
kinetic law: 761984
fast: false
product: 761972
notes: Abbreviation: R_GLCNACPT EC Number: 2.7.8.15 SUBSYSTEM: Carbohydrates_AminosugarsMetabolism Equation: (0.1) M_dolp_L[c] + M_uacgam[c] --> (0.1) M_naglc2p_L[c] + M_ump[c] genes: LOCUS:PFC0935c# proteins: GENE ASSOCIATION: (PFC0935c)
reversible: false
name: UDP-N-acetylglucosamine-dolichyl-phosphate_N-acetylglucosaminephosphotransferase
reactant: 761948

761960
type: SpeciesReference
stoichiometry: 0.1
species: 301152

301152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N-Acetyl-D-glucosaminyldiphosphodolichol, human liver homolog_C1160H1898N10O120P20

761936
type: SpeciesReference
stoichiometry: 0.1
species: 300654

300654
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dolichol phosphate

305352
type: LocalParameter
units: 756622
value: 0.0

305349
type: LocalParameter
value: 0.0

305346
type: LocalParameter
units: 756574
value: 999999.0

305343
type: LocalParameter
units: 756574
value: 0.0

761972
type: SpeciesReference
stoichiometry: 1.0
species: 301723

301723
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: UMP_C9H11N2O9P

761948
type: SpeciesReference
stoichiometry: 1.0
species: 301715

301715
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

303662
type: Reaction
reactant: 797649
kinetic law: 797697
notes: Abbreviation: R_PAPA140pp EC Number: 3.1.3.4 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa140[c] --> M_12dgr140[c] + M_pi[c] genes: LOCUS:PFC0995c# proteins: GENE ASSOCIATION: (PFC0995c)
fast: false
name: phosphatidate_phosphatase
product: 797673
reversible: false
reactant: 797661
product: 797685

797649
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308615
type: LocalParameter
units: 756622
value: 0.0

308614
type: LocalParameter
value: 0.0

308612
type: LocalParameter
units: 756574
value: 999999.0

308611
type: LocalParameter
units: 756574
value: 0.0

797673
type: SpeciesReference
stoichiometry: 1.0
species: 299942

299942
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_ditetradecanoyl_n_C140_C31H60O5

797661
type: SpeciesReference
stoichiometry: 1.0
species: 301268

797685
type: SpeciesReference
stoichiometry: 1.0
species: 301390

303995
type: Reaction
product: 804907
reactant: 804871
name: succinate_dehydrogenase_(ubiquinone)
notes: Abbreviation: R_SUCD2_u6m_mt EC Number: 1.3.5.1 SUBSYSTEM: Others_MitochondrialElectronFlow Equation: M_q8[m] + M_succ[m] <==> M_fum[m] + M_q8h2[m] genes: LOCUS:PF10_0334# proteins: GENE ASSOCIATION: (PF10_0334)
reversible: true
reactant: 804883
fast: false
kinetic law: 804919
product: 804895

804907
type: SpeciesReference
stoichiometry: 1.0
species: 301505

804871
type: SpeciesReference
stoichiometry: 1.0
species: 301501

804883
type: SpeciesReference
stoichiometry: 1.0
species: 301567

301567
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Succinate_C4H4O4

309226
type: LocalParameter
units: 756622
value: 0.0

309224
type: LocalParameter
value: 0.0

309223
type: LocalParameter
units: 756574
value: 999999.0

309221
type: LocalParameter
units: 756574
value: -999999.0

804895
type: SpeciesReference
stoichiometry: 1.0
species: 300761

300761
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Fumarate_C4H2O4

302632
type: Reaction
kinetic law: 773797
product: 773784
reactant: 773772
notes: Abbreviation: R_EX_ocdca_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_ocdca <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_ocdca_e_

306739
type: LocalParameter
units: 756622
value: 0.0

306738
type: LocalParameter
value: 0.0

306737
type: LocalParameter
units: 756574
value: 999999.0

306735
type: LocalParameter
units: 756574
value: -999999.0

773784
type: SpeciesReference
stoichiometry: 1.0
species: 301922

301922
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: octadecanoate_n_C180_C18H35O2

773772
type: SpeciesReference
stoichiometry: 1.0
species: 301216

301216
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: octadecanoate_n_C180_C18H35O2

301625
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Thymidine_C10H14N2O5

303104
type: Reaction
notes: Abbreviation: R_PIN4K EC Number: 2.7.1.67 SUBSYSTEM: Lipids_InositolPhosphateMetabolism Equation: M_atp[c] + (0.01) M_ptd1ino[c] --> M_adp[c] + M_h[c] + (0.01) M_ptd4ino[c] genes: LOCUS:PFE0485w# proteins: GENE ASSOCIATION: (PFE0485w)
product: 784596
reactant: 784560
reversible: false
name: 1-phosphatidylinositol_4-kinase
reactant: 784548
kinetic law: 784608
fast: false
product: 784572
product: 784584

784596
type: SpeciesReference
stoichiometry: 0.01
species: 301471

301471
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

784560
type: SpeciesReference
stoichiometry: 0.01
species: 301464

301464
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

784548
type: SpeciesReference
stoichiometry: 1.0
species: 300414

307560
type: LocalParameter
units: 756622
value: 0.0

307558
type: LocalParameter
value: 0.0

307557
type: LocalParameter
units: 756574
value: 999999.0

307556
type: LocalParameter
units: 756574
value: 0.0

784572
type: SpeciesReference
stoichiometry: 1.0
species: 300332

784584
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302001
type: Reaction
reversible: false
reactant: 757132
fast: false
name: amino-acid_N-acetyltransferase
product: 757156
product: 757180
reactant: 757144
product: 757168
notes: Abbreviation: R_ACGS EC Number: 2.3.1.1 SUBSYSTEM: AminoAcids_ArgProMetabolism Equation: M_accoa[c] + M_glu_L[c] --> M_acglu[c] + M[c] oa[c] + M_h[c] genes: LOCUS:PFA0465c# proteins: GENE ASSOCIATION: (PFA0465c)
kinetic law: 757192

757132
type: SpeciesReference
stoichiometry: 1.0
species: 300302

300302
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Acetyl_CoA_C23H34N7O17P3S

757156
type: SpeciesReference
stoichiometry: 1.0
species: 300312

300312
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N_Acetyl_L_glutamate_C7H9NO5

757180
type: SpeciesReference
stoichiometry: 1.0
species: 300911

757144
type: SpeciesReference
stoichiometry: 1.0
species: 300829

300829
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Glutamate_C5H8NO4

757168
type: SpeciesReference
stoichiometry: 1.0
species: 300522

300522
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Coenzyme_A_C21H32N7O16P3S

304840
type: LocalParameter
units: 756622
value: 0.0

304837
type: LocalParameter
value: 0.0

304834
type: LocalParameter
units: 756574
value: 999999.0

304833
type: LocalParameter
units: 756574
value: 0.0

304643
type: Reaction
kinetic law: 815442
product: 815429
reactant: 815415
notes: Abbreviation: R_CPPPG3tmt EC Number: SUBSYSTEM: Transport_MT Equation: M[c] pppg3[m] <==> M[c] pppg3[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_CPPPG3tmt

310414
type: LocalParameter
units: 756622
value: 0.0

310412
type: LocalParameter
value: 0.0

310411
type: LocalParameter
units: 756574
value: 999999.0

310409
type: LocalParameter
units: 756574
value: -999999.0

815429
type: SpeciesReference
stoichiometry: 1.0
species: 300528

300528
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Coproporphyrinogen_III_C36H40N4O8

815415
type: SpeciesReference
stoichiometry: 1.0
species: 300530

300530
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Coproporphyrinogen_III_C36H40N4O8

300586
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Deoxycytidine_C9H13N3O4

300090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_C48H74O3

302468
type: Reaction
kinetic law: 771716
product: 771704
reactant: 771692
notes: Abbreviation: R_EX_dag EC Number: SUBSYSTEM: Exchange Equation: [e] : M_dag <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_dag

306449
type: LocalParameter
units: 756622
value: 0.0

306448
type: LocalParameter
value: 0.0

306447
type: LocalParameter
units: 756574
value: 999999.0

306445
type: LocalParameter
units: 756574
value: -999999.0

771704
type: SpeciesReference
stoichiometry: 1.0
species: 301808

301808
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: diacylglycerol

771692
type: SpeciesReference
stoichiometry: 1.0
species: 300558

300558
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: diacylglycerol

303182
type: Reaction
reversible: false
product: 786465
reactant: 786453
name: phosphatidate_cytidylyltransferase
fast: false
reactant: 786440
kinetic law: 786490
notes: Abbreviation: R_DASYN181 EC Number: 2.7.7.41 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] tp[c] + M_h[c] + M_pa181[c] --> M[c] dpdodec11eg[c] + M_ppi[c] genes: LOCUS:PF14_0097# proteins: GENE ASSOCIATION: (PF14_0097)
reactant: 786428
product: 786477

786465
type: SpeciesReference
stoichiometry: 1.0
species: 300456

300456
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

786453
type: SpeciesReference
stoichiometry: 1.0
species: 301288

301288
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate_C39H71O8P1

786440
type: SpeciesReference
stoichiometry: 1.0
species: 300911

307699
type: LocalParameter
units: 756622
value: 0.0

307697
type: LocalParameter
value: 0.0

307696
type: LocalParameter
units: 756574
value: 999999.0

307694
type: LocalParameter
units: 756574
value: 0.0

786428
type: SpeciesReference
stoichiometry: 1.0
species: 300536

300536
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: CTP_C9H12N3O14P3

786477
type: SpeciesReference
stoichiometry: 1.0
species: 301416

301487
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Pyridoxal_C8H9NO3

303422
type: Reaction
product: 792241
notes: Abbreviation: R_PLIPA2E141pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pe141[c] --> M_1agpe141[c] + M_h[c] + M_ttdcea[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
reactant: 792229
reactant: 792217
fast: false
reversible: false
product: 792253
product: 792265
name: phospholipase_A2
kinetic law: 792277

792241
type: SpeciesReference
stoichiometry: 1.0
species: 299974

299974
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C141_C19H38NO7P1

792229
type: SpeciesReference
stoichiometry: 1.0
species: 301314

792217
type: SpeciesReference
stoichiometry: 1.0
species: 300903

792253
type: SpeciesReference
stoichiometry: 1.0
species: 300911

792265
type: SpeciesReference
stoichiometry: 1.0
species: 301703

308143
type: LocalParameter
units: 756622
value: 0.0

308141
type: LocalParameter
value: 0.0

308140
type: LocalParameter
units: 756574
value: 999999.0

308138
type: LocalParameter
units: 756574
value: 0.0

301773
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 4_Aminobutanoate_C4H9NO2

302267
type: Reaction
product: 766595
reversible: true
product: 766608
notes: Abbreviation: R_MTHFC EC Number: 3.5.4.9 SUBSYSTEM: Cofactors_FolateBiosynthesis Equation: M_h2o[c] + M[m] ethf[c] <==> M_10fthf[c] + M_h[c] genes: LOCUS:PFF1490w# proteins: GENE ASSOCIATION: (PFF1490w)
reactant: 766569
fast: false
name: methenyltetrahydrofolate_cyclohydrolase
reactant: 766582
kinetic law: 766620

766595
type: SpeciesReference
stoichiometry: 1.0
species: 299936

299936
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 10_Formyltetrahydrofolate_C20H21N7O7

766608
type: SpeciesReference
stoichiometry: 1.0
species: 300911

766569
type: SpeciesReference
stoichiometry: 1.0
species: 300903

766582
type: SpeciesReference
stoichiometry: 1.0
species: 301088

301088
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_10_Methenyltetrahydrofolate_C20H20N7O6

306028
type: LocalParameter
units: 756622
value: 0.0

306026
type: LocalParameter
value: 0.0

306023
type: LocalParameter
units: 756574
value: 999999.0

306020
type: LocalParameter
units: 756574
value: -999999.0

300154
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: _S_3_Methyl_2_oxopentanoate_C6H9O3

300967
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Histidine_C6H9N3O2

300440
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

304325
type: Reaction
kinetic law: 810957
product: 810945
reactant: 810933
notes: Abbreviation: R_NADtap EC Number: SUBSYSTEM: Transport_AP Equation: M_nad[ap] <==> M_nad[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_NADtap

309831
type: LocalParameter
units: 756622
value: 0.0

309829
type: LocalParameter
value: 0.0

309828
type: LocalParameter
units: 756574
value: 999999.0

309826
type: LocalParameter
units: 756574
value: -999999.0

810945
type: SpeciesReference
stoichiometry: 1.0
species: 301130

301130
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

810933
type: SpeciesReference
stoichiometry: 1.0
species: 301128

301384
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Phenylalanyl_tRNA_Phe_C9H10NOR

304028
type: Reaction
product: 805634
product: 805646
fast: false
notes: Abbreviation: R_ACCOAL2 EC Number: 6.2.1.13 SUBSYSTEM: Carbohydrates_PyruvateMetabolism Equation: M_atp[c] + M[c] oa[c] + M_ppa[c] --> M_adp[c] + M_pi[c] + M_ppcoa[c] genes: LOCUS:PF14_0357# proteins: GENE ASSOCIATION: (PF14_0357)
product: 805622
reactant: 805610
reactant: 805585
reactant: 805598
reversible: false
name: Acetate-CoA_ligase_(ADP-forming)
kinetic law: 805658

805634
type: SpeciesReference
stoichiometry: 1.0
species: 301390

805646
type: SpeciesReference
stoichiometry: 1.0
species: 301412

301412
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Propanoyl_CoA_C24H36N7O17P3S

805622
type: SpeciesReference
stoichiometry: 1.0
species: 300332

805610
type: SpeciesReference
stoichiometry: 1.0
species: 301406

301406
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Propionate_n_C30_C3H5O2

805585
type: SpeciesReference
stoichiometry: 1.0
species: 300414

805598
type: SpeciesReference
stoichiometry: 1.0
species: 300522

309286
type: LocalParameter
units: 756622
value: 0.0

309285
type: LocalParameter
value: 0.0

309283
type: LocalParameter
units: 756574
value: 999999.0

309282
type: LocalParameter
units: 756574
value: 0.0

302984
type: Reaction
reactant: 782214
kinetic law: 782263
fast: false
product: 782238
reactant: 782226
name: glycerol-3-phosphate_O-acyltransferase
product: 782251
reversible: false
notes: Abbreviation: R_G3PAT180_ap EC Number: 2.3.1.15 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_glyc3p[ap] + M_ocdcaACP[ap] --> M_1odecg3p[ap] + M_ACP[ap] genes: LOCUS:PF13_0100# LOCUS:PFL0620c# proteins: GENE ASSOCIATION: (PF13_0100) or (PFL0620c)

782214
type: SpeciesReference
stoichiometry: 1.0
species: 300849

300849
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Glycerol_3_phosphate_C3H7O6P

307356
type: LocalParameter
units: 756622
value: 0.0

307354
type: LocalParameter
value: 0.0

307353
type: LocalParameter
units: 756574
value: 999999.0

307352
type: LocalParameter
units: 756574
value: 0.0

782238
type: SpeciesReference
stoichiometry: 1.0
species: 300014

300014
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_octadecanoyl_sn_glycerol_3_phosphate_C21H41O7P1

782226
type: SpeciesReference
stoichiometry: 1.0
species: 301210

301210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

782251
type: SpeciesReference
stoichiometry: 1.0
species: 300270

302776
type: Reaction
reactant: 776545
kinetic law: 776594
notes: Abbreviation: R_GGTT EC Number: SUBSYSTEM: Lipids_DolicholMetabolism Equation: M_ggdp[c] + M_ipdp[c] --> M_pendp[c] + M_ppi[c] genes: proteins: GENE ASSOCIATION:
reactant: 776557
fast: false
name: R_GGTT
reversible: false
product: 776569
product: 776582

776545
type: SpeciesReference
stoichiometry: 1.0
species: 300811

300811
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Geranylgeranyl diphosphate

306991
type: LocalParameter
units: 756622
value: 0.0

306989
type: LocalParameter
value: 0.0

306988
type: LocalParameter
units: 756574
value: 999999.0

306987
type: LocalParameter
units: 756574
value: 0.0

776557
type: SpeciesReference
stoichiometry: 1.0
species: 301018

776569
type: SpeciesReference
stoichiometry: 1.0
species: 301338

301338
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: all_trans_Pentaprenyl_diphosphate_C25H41O7P2

776582
type: SpeciesReference
stoichiometry: 1.0
species: 301416

300803
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: GDP_C10H12N5O11P2

303689
type: Reaction
fast: false
reactant: 798207
reactant: 798195
name: phosphatidate_phosphatase
product: 798231
reversible: false
notes: Abbreviation: R_PAPA181 EC Number: 3.1.3.4 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa181[c] --> M_12dgr181[c] + M_pi[c] genes: LOCUS:PFC0995c# proteins: GENE ASSOCIATION: (PFC0995c)
kinetic law: 798243
product: 798219

798207
type: SpeciesReference
stoichiometry: 1.0
species: 301288

798195
type: SpeciesReference
stoichiometry: 1.0
species: 300903

798231
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308665
type: LocalParameter
units: 756622
value: 0.0

308663
type: LocalParameter
value: 0.0

308662
type: LocalParameter
units: 756574
value: 999999.0

308660
type: LocalParameter
units: 756574
value: 0.0

798219
type: SpeciesReference
stoichiometry: 1.0
species: 299962

299962
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_dioctadec_11_enoyl_n_C181_C39H72O5

303920
type: Reaction
reactant: 803129
notes: Abbreviation: R_DATPHs EC Number: SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_datp[c] + M_h[c] + M_h2o[c] --> M_ditp[c] + M_nh4[c] genes: proteins: GENE ASSOCIATION:
reversible: false
product: 803166
product: 803178
reactant: 803141
name: R_DATPHs
fast: false
reactant: 803154
kinetic law: 803190

803129
type: SpeciesReference
stoichiometry: 1.0
species: 300562

300562
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dATP_C10H12N5O12P3

803166
type: SpeciesReference
stoichiometry: 1.0
species: 300638

300638
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dITP_C10H11N4O13P3

803178
type: SpeciesReference
stoichiometry: 1.0
species: 301160

803141
type: SpeciesReference
stoichiometry: 1.0
species: 300911

803154
type: SpeciesReference
stoichiometry: 1.0
species: 300903

309088
type: LocalParameter
units: 756622
value: 0.0

309087
type: LocalParameter
value: 0.0

309085
type: LocalParameter
units: 756574
value: 999999.0

309084
type: LocalParameter
units: 756574
value: 0.0

301902
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Mannose_C6H12O6

301645
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Ala_R

304481
type: Reaction
kinetic law: 813023
product: 813010
reactant: 812998
notes: Abbreviation: R_DGSNt EC Number: SUBSYSTEM: Transport_base Equation: M_dgsn[e] <==> M_dgsn[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
fast: false
reversible: true
name: R_DGSNt

310117
type: LocalParameter
units: 756622
value: 0.0

310115
type: LocalParameter
value: 0.0

310114
type: LocalParameter
units: 756574
value: 999999.0

310112
type: LocalParameter
units: 756574
value: -999999.0

813010
type: SpeciesReference
stoichiometry: 1.0
species: 300608

812998
type: SpeciesReference
stoichiometry: 1.0
species: 300610

300610
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyguanosine_C10H13N5O4

302009
type: Reaction
name: Aspartate-tRNA_ligase
product: 757506
kinetic law: 757542
reactant: 757482
product: 757518
reversible: false
notes: Abbreviation: R_ASPTRS EC Number: 6.1.1.12 SUBSYSTEM: AminoAcids_AsnAspMetabolism Equation: M_asp_L[c] + M_atp[c] + M_trnaasp[c] --> M_amp[c] + M_asptrna[c] + M_ppi[c] genes: LOCUS:PFA0145c# LOCUS:PFE0715w# proteins: GENE ASSOCIATION: (PFA0145c) or (PFE0715w)
product: 757530
fast: false
reactant: 757470
reactant: 757494

757506
type: SpeciesReference
stoichiometry: 1.0
species: 300370

304872
type: LocalParameter
units: 756622
value: 0.0

304869
type: LocalParameter
value: 0.0

304866
type: LocalParameter
units: 756574
value: 999999.0

304865
type: LocalParameter
units: 756574
value: 0.0

757482
type: SpeciesReference
stoichiometry: 1.0
species: 300414

757518
type: SpeciesReference
stoichiometry: 1.0
species: 300410

300410
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Aspartyl_tRNA_Asp_C4H5NO3R

757530
type: SpeciesReference
stoichiometry: 1.0
species: 301416

757470
type: SpeciesReference
stoichiometry: 1.0
species: 300404

300404
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Aspartate_C4H6NO4

757494
type: SpeciesReference
stoichiometry: 1.0
species: 301651

301651
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Asp_R

299964
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 1_2_Diacyl_sn_glycerol_dioctadec_11_enoyl_n_C181_C39H72O5

304712
type: Reaction
kinetic law: 816303
product: 816291
reactant: 816278
notes: Abbreviation: R_PPItmt EC Number: SUBSYSTEM: Transport_MT Equation: M_ppi[m] <==> M_ppi[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PPItmt

310540
type: LocalParameter
units: 756622
value: 0.0

310539
type: LocalParameter
value: 0.0

310537
type: LocalParameter
units: 756574
value: 999999.0

310536
type: LocalParameter
units: 756574
value: -999999.0

816291
type: SpeciesReference
stoichiometry: 1.0
species: 301416

816278
type: SpeciesReference
stoichiometry: 1.0
species: 301418

301418
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Diphosphate_HO7P2

303566
type: Reaction
name: serine_C-palmitoyltransferase
fast: false
reactant: 795540
reactant: 795528
reactant: 795516
notes: Abbreviation: R_SERPT EC Number: 2.3.1.50 SUBSYSTEM: Lipids_SphingomyelinCeramideMetabolism Equation: M_h[c] + M_pmtcoa[c] + M_ser_L[c] --> M_3dsphgn[c] + M[c] o2[c] + M[c] oa[c] genes: LOCUS:PF14_0155# proteins: GENE ASSOCIATION: (PF14_0155)
product: 795564
kinetic law: 795589
reversible: false
product: 795552
product: 795577

795540
type: SpeciesReference
stoichiometry: 1.0
species: 301533

301533
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Serine_C3H7NO3

795528
type: SpeciesReference
stoichiometry: 1.0
species: 301398

301398
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Palmitoyl_CoA_n_C160CoA_C37H62N7O17P3S

795516
type: SpeciesReference
stoichiometry: 1.0
species: 300911

795564
type: SpeciesReference
stoichiometry: 1.0
species: 300514

308407
type: LocalParameter
units: 756622
value: 0.0

308405
type: LocalParameter
value: 0.0

308404
type: LocalParameter
units: 756574
value: 999999.0

308402
type: LocalParameter
units: 756574
value: 0.0

795552
type: SpeciesReference
stoichiometry: 1.0
species: 300120

300120
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Dehydrosphinganine_C18H38NO2

795577
type: SpeciesReference
stoichiometry: 1.0
species: 300522

300034
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoethanolamine_n_C141_C19H38NO7P1

300438
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: CDPcholine_C14H25N4O11P2

303251
type: Reaction
name: glycerophosphodiester_phosphodiesterase
reactant: 788003
reversible: false
fast: false
product: 788027
notes: Abbreviation: R_GPDDA3 EC Number: 3.1.4.46 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_g3ps[c] + M_h2o[c] --> M_glyc3p[c] + M_h[c] + M_ser_L[c] genes: LOCUS:PF14_0060# proteins: GENE ASSOCIATION: (PF14_0060)
product: 788039
kinetic law: 788063
reactant: 788015
product: 788051

788003
type: SpeciesReference
stoichiometry: 1.0
species: 300781

300781
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Glycerophosphoserine_C6H13NO8P

788027
type: SpeciesReference
stoichiometry: 1.0
species: 300851

788039
type: SpeciesReference
stoichiometry: 1.0
species: 300911

307824
type: LocalParameter
units: 756622
value: 0.0

307822
type: LocalParameter
value: 0.0

307821
type: LocalParameter
units: 756574
value: 999999.0

307819
type: LocalParameter
units: 756574
value: 0.0

788015
type: SpeciesReference
stoichiometry: 1.0
species: 300903

788051
type: SpeciesReference
stoichiometry: 1.0
species: 301533

303306
type: Reaction
fast: false
reversible: false
kinetic law: 789449
product: 789437
reactant: 789401
product: 789413
notes: Abbreviation: R_LPLIPAL1E181pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpe181[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_ocdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 789425
name: lysophospholipase
reactant: 789389

307928
type: LocalParameter
units: 756622
value: 0.0

307927
type: LocalParameter
value: 0.0

307925
type: LocalParameter
units: 756574
value: 999999.0

307924
type: LocalParameter
units: 756574
value: 0.0

789437
type: SpeciesReference
stoichiometry: 1.0
species: 301220

789401
type: SpeciesReference
stoichiometry: 1.0
species: 300903

789413
type: SpeciesReference
stoichiometry: 1.0
species: 300775

789425
type: SpeciesReference
stoichiometry: 1.0
species: 300911

789389
type: SpeciesReference
stoichiometry: 1.0
species: 299982

299982
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C181_C23H46NO7P1

302203
type: Reaction
reversible: true
kinetic law: 764376
name: transaldolase
notes: Abbreviation: R_TALA EC Number: 2.2.1.2 SUBSYSTEM: Carbohydrates_PentosePhosphateCycle Equation: M_g3p[c] + M_s7p[c] <==> M[e] 4p[c] + M_f6p[c] genes: proteins: GENE ASSOCIATION:
fast: false
product: 764352
reactant: 764328
product: 764364
reactant: 764340

305779
type: LocalParameter
units: 756622
value: 0.0

305776
type: LocalParameter
value: 0.0

305773
type: LocalParameter
units: 756574
value: 999999.0

305770
type: LocalParameter
units: 756574
value: -999999.0

764352
type: SpeciesReference
stoichiometry: 1.0
species: 300699

300699
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Erythrose_4_phosphate_C4H7O7P

764328
type: SpeciesReference
stoichiometry: 1.0
species: 300771

300771
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Glyceraldehyde_3_phosphate_C3H5O6P

764364
type: SpeciesReference
stoichiometry: 1.0
species: 300707

300707
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Fructose_6_phosphate_C6H11O9P

764340
type: SpeciesReference
stoichiometry: 1.0
species: 301519

301519
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Sedoheptulose_7_phosphate_C7H13O10P

300172
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Oxohexanoyl_CoA_C27H40N7O18P3S

300320
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Acetoacetyl_ACP_C15H25N2O9PRS

300835
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: gamma_L_Glutamyl_L_cysteine_C8H13N2O5S

302803
type: Reaction
fast: false
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
notes: Abbreviation: R_3OAR141_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ocmrs7eACP[ap] + M_h[ap] + M_nadph[ap] --> M_3hcmrs7eACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reversible: false
reactant: 777204
product: 777228
reactant: 777192
kinetic law: 777252
product: 777240
reactant: 777216

777204
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777228
type: SpeciesReference
stoichiometry: 1.0
species: 300126

300126
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777192
type: SpeciesReference
stoichiometry: 1.0
species: 300158

300158
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

307038
type: LocalParameter
units: 756622
value: 0.0

307036
type: LocalParameter
value: 0.0

307035
type: LocalParameter
units: 756574
value: 999999.0

307034
type: LocalParameter
units: 756574
value: 0.0

777240
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777216
type: SpeciesReference
stoichiometry: 1.0
species: 301146

300292
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Acetate_C2H3O2

304163
type: Reaction
fast: false
reactant: 807974
reactant: 807962
product: 807999
kinetic law: 808011
reversible: true
product: 807987
notes: Abbreviation: R_NO3t2rpp EC Number: SUBSYSTEM: Transport Equation: M_h[e] + M_no3[e] <==> M_h[c] + M_no3[c] genes: LOCUS:PFC0725c# proteins: GENE ASSOCIATION: (PFC0725c)
name: R_NO3t2rpp

807974
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species: 301176

301176
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nitrate_NO3

807962
type: SpeciesReference
stoichiometry: 1.0
species: 300913

300913
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: H_H

807999
type: SpeciesReference
stoichiometry: 1.0
species: 301174

301174
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Nitrate_NO3

309534
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units: 756622
value: 0.0

309532
type: LocalParameter
value: 0.0

309531
type: LocalParameter
units: 756574
value: 999999.0

309529
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units: 756574
value: -999999.0

807987
type: SpeciesReference
stoichiometry: 1.0
species: 300911

300662
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: periplasmic_protein_disulfide_isomerase_I_oxidized_X

302822
type: Reaction
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
fast: false
product: 777749
reactant: 777712
notes: Abbreviation: R_3OAR80_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ooctACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hoctACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777700
product: 777736
reactant: 777724
kinetic law: 777761
reversible: true

777749
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777712
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777700
type: SpeciesReference
stoichiometry: 1.0
species: 300182

300182
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777736
type: SpeciesReference
stoichiometry: 1.0
species: 300142

300142
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777724
type: SpeciesReference
stoichiometry: 1.0
species: 301146

307073
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units: 756622
value: 0.0

307071
type: LocalParameter
value: 0.0

307070
type: LocalParameter
units: 756574
value: 999999.0

307069
type: LocalParameter
units: 756574
value: -999999.0

299956
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 1_2_Diacyl_sn_glycerol_dihexadec_9_enoyl_n_C161_C35H64O5

302900
type: Reaction
notes: Abbreviation: R_EAR161x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_t3c9palmeACP[ap] --> M_hdeACP[ap] + M_nad[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
fast: false
product: 779705
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
kinetic law: 779717
reversible: false
reactant: 779681
reactant: 779657
product: 779693
reactant: 779669

779705
type: SpeciesReference
stoichiometry: 1.0
species: 301128

307205
type: LocalParameter
units: 756622
value: 0.0

307203
type: LocalParameter
value: 0.0

307202
type: LocalParameter
units: 756574
value: 999999.0

307201
type: LocalParameter
units: 756574
value: 0.0

779681
type: SpeciesReference
stoichiometry: 1.0
species: 301577

301577
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779657
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779693
type: SpeciesReference
stoichiometry: 1.0
species: 300949

300949
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779669
type: SpeciesReference
stoichiometry: 1.0
species: 301134

300907
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: H2O_H2O

300556
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: diacylglycerol

303605
type: Reaction
fast: false
reactant: 796480
name: stearoyl-CoA_9-desaturase
product: 796516
reversible: false
notes: Abbreviation: R_DESAT18_2 EC Number: 1.14.19.1 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h[c] + M_nadph[c] + M_o2[c] + M_odecoa[c] --> (2.0) M_h2o[c] + M_nadp[c] + M_ocdycacoa[c] genes: LOCUS:PFE0555w# proteins: GENE ASSOCIATION: (PFE0555w)
reactant: 796492
reactant: 796456
product: 796504
kinetic law: 796541
product: 796528
reactant: 796468

796480
type: SpeciesReference
stoichiometry: 1.0
species: 301186

796516
type: SpeciesReference
stoichiometry: 1.0
species: 301142

796492
type: SpeciesReference
stoichiometry: 1.0
species: 301240

301240
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

796456
type: SpeciesReference
stoichiometry: 1.0
species: 300911

796504
type: SpeciesReference
stoichiometry: 2.0
species: 300903

308478
type: LocalParameter
units: 756622
value: 0.0

308477
type: LocalParameter
value: 0.0

308475
type: LocalParameter
units: 756574
value: 999999.0

308474
type: LocalParameter
units: 756574
value: 0.0

796528
type: SpeciesReference
stoichiometry: 1.0
species: 301224

301224
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

796468
type: SpeciesReference
stoichiometry: 1.0
species: 301148

301689
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Tryptophan_C11H12N2O2

304052
type: Reaction
reactant: 806165
product: 806201
name: thioredoxin-disulfide_reductase
notes: Abbreviation: R_TRDR EC Number: 1.8.1.9 SUBSYSTEM: Redox_RedoxMetabolism ; Redox_MitochondrialAntioxidantSystem ; Nucleotides_PyrimidineMetabolism ; Nucleotides_PurineMetabolism Equation: M_h[c] + M_nadph[c] + M_trdox[c] --> M_nadp[c] + M_trdrd[c] genes: LOCUS:PFI1170c# proteins: GENE ASSOCIATION: (PFI1170c)
reversible: false
reactant: 806189
product: 806213
reactant: 806177
kinetic law: 806225
fast: false

806165
type: SpeciesReference
stoichiometry: 1.0
species: 300911

806201
type: SpeciesReference
stoichiometry: 1.0
species: 301142

806189
type: SpeciesReference
stoichiometry: 1.0
species: 301637

301637
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Oxidized_thioredoxin_X

806213
type: SpeciesReference
stoichiometry: 1.0
species: 301641

301641
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Reduced_thioredoxin_XH2

806177
type: SpeciesReference
stoichiometry: 1.0
species: 301148

309330
type: LocalParameter
units: 756622
value: 0.0

309329
type: LocalParameter
value: 0.0

309327
type: LocalParameter
units: 756574
value: 999999.0

309326
type: LocalParameter
units: 756574
value: 0.0

301436
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Proline_C5H9NO2

300356
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: L_Alanine_C3H7NO2

302814
type: Reaction
product: 777517
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
notes: Abbreviation: R_3OAR181_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ocvac11eACP[ap] + M_h[ap] + M_nadph[ap] --> M_3hcvac11eACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777481
product: 777530
reactant: 777505
reversible: false
fast: false
reactant: 777493
kinetic law: 777542

777517
type: SpeciesReference
stoichiometry: 1.0
species: 300130

300130
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777481
type: SpeciesReference
stoichiometry: 1.0
species: 300162

300162
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777530
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777505
type: SpeciesReference
stoichiometry: 1.0
species: 301146

777493
type: SpeciesReference
stoichiometry: 1.0
species: 300909

307058
type: LocalParameter
units: 756622
value: 0.0

307056
type: LocalParameter
value: 0.0

307055
type: LocalParameter
units: 756574
value: 999999.0

307054
type: LocalParameter
units: 756574
value: 0.0

302163
type: Reaction
reactant: 763133
fast: false
notes: Abbreviation: R_G3PD1ir EC Number: 1.1.1.8 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Others_MitochondrialElectronFlow ; Carbohydrates_Glycolysis ; Lipids_UtilizationPhospholipids Equation: M_dhap[c] + M_h[c] + M_nadh[c] --> M_glyc3p[c] + M_nad[c] genes: LOCUS:PFL0780w# proteins: GENE ASSOCIATION: (PFL0780w)
reversible: false
reactant: 763109
product: 763158
product: 763145
kinetic law: 763170
reactant: 763121
name: glycerol-3-phosphate_dehydrogenase_(NAD+)

763133
type: SpeciesReference
stoichiometry: 1.0
species: 301136

301136
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

763109
type: SpeciesReference
stoichiometry: 1.0
species: 300616

300616
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dihydroxyacetone_phosphate_C3H5O6P

763158
type: SpeciesReference
stoichiometry: 1.0
species: 301130

763145
type: SpeciesReference
stoichiometry: 1.0
species: 300851

305552
type: LocalParameter
units: 756622
value: 0.0

305549
type: LocalParameter
value: 0.0

305546
type: LocalParameter
units: 756574
value: 999999.0

305543
type: LocalParameter
units: 756574
value: 0.0

763121
type: SpeciesReference
stoichiometry: 1.0
species: 300911

300996
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Isocitrate_C6H5O7

299984
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoglycerol_n_C120_C18H36O9P1

303011
type: Reaction
kinetic law: 782758
product: 782746
product: 782734
reactant: 782721
notes: Abbreviation: R_3HAD160_ap EC Number: 4.2.1.61 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3hpalmACP[ap] --> M_h2o[ap] + M_tpalm2eACP[ap] genes: LOCUS:PF13_0128# proteins: GENE ASSOCIATION: (PF13_0128)
fast: false
reversible: false
name: 3-Hydroxypalmitoyl-[acyl-carrier-protein]_dehydratase

307401
type: LocalParameter
units: 756622
value: 0.0

307399
type: LocalParameter
value: 0.0

307398
type: LocalParameter
units: 756574
value: 999999.0

307397
type: LocalParameter
units: 756574
value: 0.0

782746
type: SpeciesReference
stoichiometry: 1.0
species: 301635

782734
type: SpeciesReference
stoichiometry: 1.0
species: 300901

300901
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: H2O_H2O

782721
type: SpeciesReference
stoichiometry: 1.0
species: 300146

300146
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

301707
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Tyrosine_C9H11NO3

304550
type: Reaction
kinetic law: 813934
product: 813921
reactant: 813909
notes: Abbreviation: R_EX_folate2 EC Number: SUBSYSTEM: Transport_cofactor Equation: M_6hmhpt[e] <==> M_6hmhpt[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_folate2

310243
type: LocalParameter
units: 756622
value: 0.0

310242
type: LocalParameter
value: 0.0

310240
type: LocalParameter
units: 756574
value: 999999.0

310239
type: LocalParameter
units: 756574
value: -999999.0

813921
type: SpeciesReference
stoichiometry: 1.0
species: 300258

300258
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 6_hydroxymethyl_dihydropterin_C7H9N5O2

813909
type: SpeciesReference
stoichiometry: 1.0
species: 300260

300260
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 6_hydroxymethyl_dihydropterin_C7H9N5O2

301298
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

302911
type: Reaction
reactant: 779948
reactant: 779960
kinetic law: 780008
fast: false
product: 779984
reversible: false
product: 779996
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
reactant: 779972
notes: Abbreviation: R_EAR60x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_thex2eACP[ap] --> M_hexACP[ap] + M_nad[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)

779948
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779960
type: SpeciesReference
stoichiometry: 1.0
species: 301134

307225
type: LocalParameter
units: 756622
value: 0.0

307223
type: LocalParameter
value: 0.0

307222
type: LocalParameter
units: 756574
value: 999999.0

307221
type: LocalParameter
units: 756574
value: 0.0

779984
type: SpeciesReference
stoichiometry: 1.0
species: 300953

300953
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Hexanoyl_ACP_n_C60ACP_C17H31N2O8PRS

779996
type: SpeciesReference
stoichiometry: 1.0
species: 301128

779972
type: SpeciesReference
stoichiometry: 1.0
species: 301603

301603
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

302041
type: Reaction
kinetic law: 758933
reactant: 758885
name: 3-hydroxyisobutyryl-CoA_hydrolase
fast: false
product: 758897
product: 758909
reversible: false
reactant: 758873
notes: Abbreviation: R_HIBHr EC Number: 3.1.2.4 SUBSYSTEM: AminoAcids_LeuIleValMetabolism Equation: M_h2o[c] + M_hibcoa[c] --> M_3hmp[c] + M[c] oa[c] + (2.0) M_h[c] genes: LOCUS:PFL1940w# proteins: GENE ASSOCIATION: (PFL1940w)
product: 758921

305000
type: LocalParameter
units: 756622
value: 0.0

304997
type: LocalParameter
value: 0.0

304994
type: LocalParameter
units: 756574
value: 999999.0

304993
type: LocalParameter
units: 756574
value: 0.0

758885
type: SpeciesReference
stoichiometry: 1.0
species: 300963

300963
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

758897
type: SpeciesReference
stoichiometry: 1.0
species: 300138

300138
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3-Hydroxy-2-methylpropanoate_C4H7O3

758909
type: SpeciesReference
stoichiometry: 1.0
species: 300522

758873
type: SpeciesReference
stoichiometry: 1.0
species: 300903

758921
type: SpeciesReference
stoichiometry: 2.0
species: 300911

301820
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyuridine_C9H12N2O5

303635
type: Reaction
reactant: 797096
kinetic law: 797144
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL2ATG140 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpg140[c] + M_pg140[c] --> M[ap] g140[c] + M_g3pg[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reversible: false
product: 797120
product: 797132
reactant: 797108
fast: false

797096
type: SpeciesReference
stoichiometry: 1.0
species: 300046

300046
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoglycerol_n_C140_C20H40O9P1

308566
type: LocalParameter
units: 756622
value: 0.0

308532
type: LocalParameter
value: 0.0

308530
type: LocalParameter
units: 756574
value: 999999.0

308529
type: LocalParameter
units: 756574
value: 0.0

797120
type: SpeciesReference
stoichiometry: 1.0
species: 300378

300378
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: acyl_phosphatidylglycerol_n_C140_C48H92O11P

797132
type: SpeciesReference
stoichiometry: 1.0
species: 300777

300777
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Glycerophosphoglycerol_C6H14O8P

797108
type: SpeciesReference
stoichiometry: 1.0
species: 301348

303278
type: Reaction
kinetic law: 788715
notes: Abbreviation: R_LPLIPAL1A160pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1hdecg3p[c] + M_h2o[c] --> M_glyc3p[c] + M_h[c] + M_hdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 788691
product: 788703
name: lysophospholipase
fast: false
product: 788679
reactant: 788655
reversible: false
reactant: 788667

307873
type: LocalParameter
units: 756622
value: 0.0

307872
type: LocalParameter
value: 0.0

307870
type: LocalParameter
units: 756574
value: 999999.0

307869
type: LocalParameter
units: 756574
value: 0.0

788691
type: SpeciesReference
stoichiometry: 1.0
species: 300911

788703
type: SpeciesReference
stoichiometry: 1.0
species: 300933

300933
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Hexadecanoate_n_C160_C16H31O2

788679
type: SpeciesReference
stoichiometry: 1.0
species: 300851

788655
type: SpeciesReference
stoichiometry: 1.0
species: 300008

300008
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_hexadecanoyl_sn_glycerol_3_phosphate_C19H37O7P1

788667
type: SpeciesReference
stoichiometry: 1.0
species: 300903

303749
type: Reaction
name: 5'-nucleotidase
product: 799497
kinetic law: 799521
reversible: false
product: 799509
fast: false
reactant: 799485
notes: Abbreviation: R_NTD1 EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_dump[c] + M_h2o[c] --> M_duri[c] + M_pi[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
reactant: 799473

799497
type: SpeciesReference
stoichiometry: 1.0
species: 300686

300686
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Deoxyuridine_C9H12N2O5

308775
type: LocalParameter
units: 756622
value: 0.0

308773
type: LocalParameter
value: 0.0

308772
type: LocalParameter
units: 756574
value: 999999.0

308770
type: LocalParameter
units: 756574
value: 0.0

799509
type: SpeciesReference
stoichiometry: 1.0
species: 301390

799485
type: SpeciesReference
stoichiometry: 1.0
species: 300903

799473
type: SpeciesReference
stoichiometry: 1.0
species: 300684

301318
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: phosphatidylethanolamine_dihexadecanoyl_n_C160_C37H74N1O8P1

300927
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Homocysteine_C4H9NO2S

301052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha-D-Mannosyl)4-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol

301200
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Oxaloacetate_C4H2O5

300236
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 4_Methyl_5_2_phosphoethyl_thiazole_C6H8NO4PS

304232
type: Reaction
fast: false
product: 809147
reactant: 809123
name: R_ARGLYSex
notes: Abbreviation: R_ARGLYSex EC Number: SUBSYSTEM: Transport_aa Equation: M_arg_L[e] + M_lys_L[c] --> M_arg_L[c] + M_lys_L[e] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
reactant: 809111
reversible: false
product: 809135
kinetic law: 809159

809147
type: SpeciesReference
stoichiometry: 1.0
species: 301048

301048
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Lysine_C6H15N2O2

809123
type: SpeciesReference
stoichiometry: 1.0
species: 301046

809111
type: SpeciesReference
stoichiometry: 1.0
species: 300394

809135
type: SpeciesReference
stoichiometry: 1.0
species: 300392

309660
type: LocalParameter
units: 756622
value: 0.0

309659
type: LocalParameter
value: 0.0

309657
type: LocalParameter
units: 756574
value: 999999.0

309656
type: LocalParameter
units: 756574
value: 0.0

302683
type: Reaction
kinetic law: 774414
product: 774402
reactant: 774390
notes: Abbreviation: R_EX_succ_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_succ <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_succ_e_

306830
type: LocalParameter
units: 756622
value: 0.0

306829
type: LocalParameter
value: 0.0

306828
type: LocalParameter
units: 756574
value: 999999.0

306826
type: LocalParameter
units: 756574
value: -999999.0

774402
type: SpeciesReference
stoichiometry: 1.0
species: 301956

301956
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Succinate_C4H4O4

774390
type: SpeciesReference
stoichiometry: 1.0
species: 301565

301565
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Succinate_C4H4O4

300578
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N6_1_2_Dicarboxyethyl_AMP_C14H14N5O11P

304079
type: Reaction
kinetic law: 806721
product: 806709
reactant: 806697
notes: Abbreviation: R_CHOLtu EC Number: SUBSYSTEM: Transport Equation: M[c] hol[e] <==> M[c] hol[c] genes: LOCUS:PFL0620c# proteins: GENE ASSOCIATION: (PFL0620c)
fast: false
reversible: true
name: R_CHOLtu

309380
type: LocalParameter
units: 756622
value: 0.0

309378
type: LocalParameter
value: 0.0

309377
type: LocalParameter
units: 756574
value: 999999.0

309375
type: LocalParameter
units: 756574
value: -999999.0

806709
type: SpeciesReference
stoichiometry: 1.0
species: 300474

300474
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Choline_C5H14NO

806697
type: SpeciesReference
stoichiometry: 1.0
species: 300476

300476
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Choline_C5H14NO

303596
type: Reaction
product: 796227
notes: Abbreviation: R_DESAT14 EC Number: 1.14.19.1 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h[c] + M_nadph[c] + M_o2[c] + M_tdcoa[c] --> (2.0) M_h2o[c] + M_nadp[c] + M_tdecoa[c] genes: LOCUS:PFE0555w# proteins: GENE ASSOCIATION: (PFE0555w)
product: 796239
fast: false
reactant: 796179
reactant: 796167
reactant: 796191
kinetic law: 796251
reactant: 796203
name: stearoyl-CoA_9-desaturase
reversible: false
product: 796215

796227
type: SpeciesReference
stoichiometry: 1.0
species: 301142

796239
type: SpeciesReference
stoichiometry: 1.0
species: 301599

796179
type: SpeciesReference
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species: 301148

796167
type: SpeciesReference
stoichiometry: 1.0
species: 300911

796191
type: SpeciesReference
stoichiometry: 1.0
species: 301186

308462
type: LocalParameter
units: 756622
value: 0.0

308460
type: LocalParameter
value: 0.0

308459
type: LocalParameter
units: 756574
value: 999999.0

308457
type: LocalParameter
units: 756574
value: 0.0

796203
type: SpeciesReference
stoichiometry: 1.0
species: 301587

301587
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

796215
type: SpeciesReference
stoichiometry: 2.0
species: 300903

300214
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Amino_2_methyl_5_phosphomethylpyrimidine_C6H8N3O4P

303971
type: Reaction
name: carbonate_dehydratase
product: 804386
product: 804398
reversible: true
reactant: 804362
kinetic law: 804411
notes: Abbreviation: R_HCO3E EC Number: 4.2.1.1 SUBSYSTEM: Nucleotides_PyrimidineMetabolism ; Lipids_FattyAcidSynthesis ; Carbohydrates_PyruvateMetabolism Equation: M[c] o2[c] + M_h2o[c] <==> M_h[c] + M_hco3[c] genes: LOCUS:PF11_0410# proteins: GENE ASSOCIATION: (PF11_0410)
fast: false
reactant: 804374

804386
type: SpeciesReference
stoichiometry: 1.0
species: 300911

804398
type: SpeciesReference
stoichiometry: 1.0
species: 300923

804362
type: SpeciesReference
stoichiometry: 1.0
species: 300514

309182
type: LocalParameter
units: 756622
value: 0.0

309180
type: LocalParameter
value: 0.0

309179
type: LocalParameter
units: 756574
value: 999999.0

309177
type: LocalParameter
units: 756574
value: -999999.0

804374
type: SpeciesReference
stoichiometry: 1.0
species: 300903

301454
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

303038
type: Reaction
product: 783221
product: 783233
kinetic law: 783245
notes: Abbreviation: R_KAT2 EC Number: 2.3.1.16 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ohcoa[c] + M[c] oa[c] --> M_accoa[c] + M_btcoa[c] genes: LOCUS:PF14_0484# proteins: GENE ASSOCIATION: (PF14_0484)
name: acetyl-CoA_C-acyltransferase
reactant: 783209
reactant: 783196
reversible: false
fast: false

783221
type: SpeciesReference
stoichiometry: 1.0
species: 300302

783233
type: SpeciesReference
stoichiometry: 1.0
species: 300418

300418
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Butanoyl_CoA_C25H38N7O17P3S

307446
type: LocalParameter
units: 756622
value: 0.0

307445
type: LocalParameter
value: 0.0

307443
type: LocalParameter
units: 756574
value: 999999.0

307442
type: LocalParameter
units: 756574
value: 0.0

783209
type: SpeciesReference
stoichiometry: 1.0
species: 300522

783196
type: SpeciesReference
stoichiometry: 1.0
species: 300172

300731
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: flavodoxin_oxidized_X

304577
type: Reaction
reactant: 814345
reactant: 814357
product: 814394
product: 814406
product: 814382
notes: Abbreviation: R_PCt EC Number: SUBSYSTEM: Transport_lipid Equation: M_atp[c] + M_h2o[c] + M_pc[c] <==> M_adp[c] + M_h[c] + M_pc[e] + M_pi[c] genes: proteins: GENE ASSOCIATION:
reversible: true
name: R_PCt
reactant: 814369
kinetic law: 814431
fast: false
product: 814419

814345
type: SpeciesReference
stoichiometry: 1.0
species: 300414

814357
type: SpeciesReference
stoichiometry: 1.0
species: 300903

814394
type: SpeciesReference
stoichiometry: 1.0
species: 300911

814406
type: SpeciesReference
stoichiometry: 1.0
species: 301302

301302
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

814382
type: SpeciesReference
stoichiometry: 1.0
species: 300332

814369
type: SpeciesReference
stoichiometry: 1.0
species: 301300

301300
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

310293
type: LocalParameter
units: 756622
value: 0.0

310291
type: LocalParameter
value: 0.0

310290
type: LocalParameter
units: 756574
value: 999999.0

310288
type: LocalParameter
units: 756574
value: -999999.0

814419
type: SpeciesReference
stoichiometry: 1.0
species: 301390

302938
type: Reaction
notes: Abbreviation: R_FACOAL181t2pp_ap EC Number: 6.2.1.3 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_SphingomyelinCeramideMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_atp[ap] + M[c] oa[ap] + M_ocdcea[ap] --> M_amp[ap] + M_odecoa[ap] + M_ppi[ap] genes: LOCUS:MAL13P1_485# LOCUS:PF07_0129# LOCUS:PF14_0751# LOCUS:PF14_0761# LOCUS:PFB0685c# LOCUS:PFB0695c# LOCUS:PFC0050c# LOCUS:PFD0085c# LOCUS:PFE1250w# LOCUS:PFF0945c# LOCUS:PFL1880w# LOCUS:PFL2570w# proteins: GENE ASSOCIATION: (MAL13P1_485) or (PF07_0129) or (PF14_0751) or (PF14_0761) or (PFB0685c) or (PFB0695c) or (PFC0050c) or (PFD0085c) or (PFE1250w) or (PFF0945c) or (PFL1880w) or (PFL2570w)
reversible: false
reactant: 780694
reactant: 780706
product: 780754
reactant: 780718
kinetic law: 780766
name: Long-chain-fatty-acid-CoA_ligase
fast: false
product: 780742
product: 780730

780694
type: SpeciesReference
stoichiometry: 1.0
species: 300412

780706
type: SpeciesReference
stoichiometry: 1.0
species: 300520

780754
type: SpeciesReference
stoichiometry: 1.0
species: 301414

780718
type: SpeciesReference
stoichiometry: 1.0
species: 301218

301218
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: octadecenoate_n_C181_C18H33O2

307272
type: LocalParameter
units: 756622
value: 0.0

307270
type: LocalParameter
value: 0.0

307269
type: LocalParameter
units: 756574
value: 999999.0

307268
type: LocalParameter
units: 756574
value: 0.0

780742
type: SpeciesReference
stoichiometry: 1.0
species: 301238

301238
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

780730
type: SpeciesReference
stoichiometry: 1.0
species: 300368

303770
type: Reaction
kinetic law: 799943
product: 799931
notes: Abbreviation: R_NTD1pp EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_dump[c] + M_h2o[c] --> M_duri[c] + M_pi[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
name: 5'-nucleotidase
product: 799919
reactant: 799895
reversible: false
reactant: 799907
fast: false

308813
type: LocalParameter
units: 756622
value: 0.0

308812
type: LocalParameter
value: 0.0

308810
type: LocalParameter
units: 756574
value: 999999.0

308809
type: LocalParameter
units: 756574
value: 0.0

799931
type: SpeciesReference
stoichiometry: 1.0
species: 301390

799919
type: SpeciesReference
stoichiometry: 1.0
species: 300686

799895
type: SpeciesReference
stoichiometry: 1.0
species: 300684

799907
type: SpeciesReference
stoichiometry: 1.0
species: 300903

303473
type: Reaction
reversible: false
product: 793477
fast: false
product: 793489
product: 793501
reactant: 793453
name: R_CLPNH180pp
reactant: 793465
kinetic law: 793513
notes: Abbreviation: R_CLPNH180pp EC Number: SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M[c] lpn180[c] + M_h2o[c] --> M_h[c] + M_pa180[c] + M_pg180[c] genes: proteins: GENE ASSOCIATION:

793477
type: SpeciesReference
stoichiometry: 1.0
species: 300911

793489
type: SpeciesReference
stoichiometry: 1.0
species: 301284

301284
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_dioctadecanoyl_sn_glycerol_3_phosphate_C39H75O8P1

793501
type: SpeciesReference
stoichiometry: 1.0
species: 301356

301356
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_dioctadecanoyl_n_C180_C42H82O10P1

793453
type: SpeciesReference
stoichiometry: 1.0
species: 300504

300504
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: cardiolipin_tetraoctadecanoyl_n_C180_C81H156O17P2

793465
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308236
type: LocalParameter
units: 756622
value: 0.0

308235
type: LocalParameter
value: 0.0

308233
type: LocalParameter
units: 756574
value: 999999.0

308232
type: LocalParameter
units: 756574
value: 0.0

302365
type: Reaction
reactant: 769673
name: thiamine-phosphate_diphosphorylase
kinetic law: 769721
reactant: 769661
fast: false
reversible: false
notes: Abbreviation: R_TMPPP EC Number: 2.5.1.3 SUBSYSTEM: Cofactors_ThiamineMetabolism Equation: M_2mahmp[c] + M_4mpetz[c] + M_h[c] --> M_ppi[c] + M_thmmp[c] genes: LOCUS:PFF0680c# proteins: GENE ASSOCIATION: (PFF0680c)
product: 769697
reactant: 769685
product: 769709

769673
type: SpeciesReference
stoichiometry: 1.0
species: 300234

300234
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Methyl_5_2_phosphoethyl_thiazole_C6H8NO4PS

306254
type: LocalParameter
units: 756622
value: 0.0

306253
type: LocalParameter
value: 0.0

306252
type: LocalParameter
units: 756574
value: 999999.0

306250
type: LocalParameter
units: 756574
value: 0.0

769661
type: SpeciesReference
stoichiometry: 1.0
species: 300072

300072
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate_C6H8N3O7P2

769697
type: SpeciesReference
stoichiometry: 1.0
species: 301416

769685
type: SpeciesReference
stoichiometry: 1.0
species: 300911

769709
type: SpeciesReference
stoichiometry: 1.0
species: 301615

304376
type: Reaction
kinetic law: 811582
product: 811569
reactant: 811557
notes: Abbreviation: R_ADPtap EC Number: SUBSYSTEM: Transport_AP Equation: M_adp[ap] <==> M_adp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_ADPtap

309924
type: LocalParameter
units: 756622
value: 0.0

309923
type: LocalParameter
value: 0.0

309921
type: LocalParameter
units: 756574
value: 999999.0

309920
type: LocalParameter
units: 756574
value: -999999.0

811569
type: SpeciesReference
stoichiometry: 1.0
species: 300332

811557
type: SpeciesReference
stoichiometry: 1.0
species: 300330

300330
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: ADP_C10H12N5O10P2

302443
type: Reaction
kinetic law: 771389
product: 771376
reactant: 771364
notes: Abbreviation: R_EX_asn_L_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_asn_L <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_asn_L_e_

306404
type: LocalParameter
units: 756622
value: 0.0

306403
type: LocalParameter
value: 0.0

306402
type: LocalParameter
units: 756574
value: 999999.0

306400
type: LocalParameter
units: 756574
value: -999999.0

771376
type: SpeciesReference
stoichiometry: 1.0
species: 301789

301789
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Asparagine_C4H8N2O3

771364
type: SpeciesReference
stoichiometry: 1.0
species: 300400

303347
type: Reaction
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL2A181 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2odec11eg3p[c] + M_h2o[c] --> M_glyc3p[c] + (2.0) M_h[c] + M_ocdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 790427
fast: false
product: 790451
product: 790439
reactant: 790403
kinetic law: 790463
reactant: 790415
reversible: false

790427
type: SpeciesReference
stoichiometry: 1.0
species: 300851

790451
type: SpeciesReference
stoichiometry: 1.0
species: 301220

790439
type: SpeciesReference
stoichiometry: 2.0
species: 300911

790403
type: SpeciesReference
stoichiometry: 1.0
species: 300080

300080
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_octadec_11_enoyl_sn_glycerol_3_phosphate_C21H40O7P1

308005
type: LocalParameter
units: 756622
value: 0.0

308004
type: LocalParameter
value: 0.0

308002
type: LocalParameter
units: 756574
value: 999999.0

308001
type: LocalParameter
units: 756574
value: 0.0

790415
type: SpeciesReference
stoichiometry: 1.0
species: 300903

301934
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

301102
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D_myo_Inositol_1_4_5_trisphosphate_C6H9O15P3

302243
type: Reaction
reactant: 765677
fast: false
reactant: 765689
product: 765701
kinetic law: 765737
product: 765725
product: 765713
notes: Abbreviation: R_ACPS1 EC Number: 2.7.8.7 SUBSYSTEM: Cofactors_CoABiosynthesis Equation: M[ap] oACP[c] + M[c] oa[c] --> M_ACP[c] + M_h[c] + M_pap[c] genes: LOCUS:PFD0980w# proteins: GENE ASSOCIATION: (PFD0980w)
name: holo-[acyl-carrier-protein]_synthase
reversible: false

765677
type: SpeciesReference
stoichiometry: 1.0
species: 300390

300390
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: apoprotein_acyl_carrier_protein_RHO

765689
type: SpeciesReference
stoichiometry: 1.0
species: 300522

765701
type: SpeciesReference
stoichiometry: 1.0
species: 300272

300272
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: acyl_carrier_protein_C11H21N2O7PRS

305964
type: LocalParameter
units: 756622
value: 0.0

305963
type: LocalParameter
value: 0.0

305962
type: LocalParameter
units: 756574
value: 999999.0

305960
type: LocalParameter
units: 756574
value: 0.0

765725
type: SpeciesReference
stoichiometry: 1.0
species: 301296

301296
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

765713
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302576
type: Reaction
kinetic law: 773104
product: 773092
reactant: 773080
notes: Abbreviation: R_EX_inositol EC Number: SUBSYSTEM: Exchange Equation: [e] : M_ptd1ino <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_inositol

306642
type: LocalParameter
units: 756622
value: 0.0

306641
type: LocalParameter
value: 0.0

306640
type: LocalParameter
units: 756574
value: 999999.0

306638
type: LocalParameter
units: 756574
value: -999999.0

773092
type: SpeciesReference
stoichiometry: 1.0
species: 301884

301884
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

773080
type: SpeciesReference
stoichiometry: 1.0
species: 301467

301467
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

300943
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

303290
type: Reaction
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL1E120pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpe120[c] + M_h2o[c] --> M_ddca[c] + M_g3pe[c] + M_h[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 788956
product: 788982
product: 788969
fast: false
reversible: false
reactant: 788944
kinetic law: 789009
product: 788996

788956
type: SpeciesReference
stoichiometry: 1.0
species: 300903

788982
type: SpeciesReference
stoichiometry: 1.0
species: 300775

788969
type: SpeciesReference
stoichiometry: 1.0
species: 300594

300594
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dodecanoate_n_C120_C12H23O2

788944
type: SpeciesReference
stoichiometry: 1.0
species: 299970

299970
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C120_C17H36NO7P1

307895
type: LocalParameter
units: 756622
value: 0.0

307894
type: LocalParameter
value: 0.0

307892
type: LocalParameter
units: 756574
value: 999999.0

307891
type: LocalParameter
units: 756574
value: 0.0

788996
type: SpeciesReference
stoichiometry: 1.0
species: 300911

304301
type: Reaction
name: R_THRGLNexR
reversible: true
reactant: 810509
product: 810533
kinetic law: 810545
reactant: 810497
product: 810521
notes: Abbreviation: R_THRGLNexR EC Number: SUBSYSTEM: Transport_aa Equation: M_gln_L[c] + M_thr_L[e] <==> M_gln_L[e] + M_thr_L[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
fast: false

810509
type: SpeciesReference
stoichiometry: 1.0
species: 301621

301621
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Threonine_C4H9NO3

810533
type: SpeciesReference
stoichiometry: 1.0
species: 301619

301619
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Threonine_C4H9NO3

309787
type: LocalParameter
units: 756622
value: 0.0

309785
type: LocalParameter
value: 0.0

309784
type: LocalParameter
units: 756574
value: 999999.0

309782
type: LocalParameter
units: 756574
value: -999999.0

810497
type: SpeciesReference
stoichiometry: 1.0
species: 300819

300819
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Glutamine_C5H10N2O3

810521
type: SpeciesReference
stoichiometry: 1.0
species: 300821

300821
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Glutamine_C5H10N2O3

301360
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_didodecanoyl_n_C120_C30H57O13P2

304004
type: Reaction
kinetic law: 805101
product: 805089
product: 805077
reactant: 805064
notes: Abbreviation: R_ACONTac EC Number: 4.2.1.3 SUBSYSTEM: Others_MitochondrialTCACycle Equation: M[c] it[c] <==> M_acon_C[c] + M_h2o[c] genes: LOCUS:PF13_0229# proteins: GENE ASSOCIATION: (PF13_0229)
fast: false
reversible: true
name: aconitate_hydratase

309242
type: LocalParameter
units: 756622
value: 0.0

309241
type: LocalParameter
value: 0.0

309239
type: LocalParameter
units: 756574
value: 999999.0

309238
type: LocalParameter
units: 756574
value: -999999.0

805089
type: SpeciesReference
stoichiometry: 1.0
species: 300903

805077
type: SpeciesReference
stoichiometry: 1.0
species: 300316

300316
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: cis_Aconitate_C6H3O6

805064
type: SpeciesReference
stoichiometry: 1.0
species: 300488

300488
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Citrate_C6H5O7

299996
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoglycerol_n_C181_C24H46O9P1

300596
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Dodecanoate_n_C120_C12H23O2

302740
type: Reaction
product: 775395
product: 775358
product: 775346
product: 775371
product: 775322
product: 775419
product: 775383
product: 775334
reactant: 775298
product: 775310
notes: Abbreviation: R_lipid2 EC Number: SUBSYSTEM: Lipids Equation: M_Rtotalcoa[c] <==> M_dcacoa[c] + M_ddcacoa[c] + M_tdcoa[c] + M_tdecoa[c] + M_pmtcoa[c] + M_hdcoa[c] + M_stcoa[c] + M_odecoa[c] + M_hxcoa[c] + M_occoa[c] genes: proteins: GENE ASSOCIATION:
product: 775407
kinetic law: 775431
reversible: true
name: R_lipid2
fast: false

775395
type: SpeciesReference
stoichiometry: 1.0
species: 301240

775358
type: SpeciesReference
stoichiometry: 1.0
species: 301398

775346
type: SpeciesReference
stoichiometry: 1.0
species: 301599

775371
type: SpeciesReference
stoichiometry: 1.0
species: 300945

300945
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

775322
type: SpeciesReference
stoichiometry: 1.0
species: 300600

775419
type: SpeciesReference
stoichiometry: 1.0
species: 301206

301206
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Octanoyl_CoA_n_C80CoA_C29H46N7O17P3S

775383
type: SpeciesReference
stoichiometry: 1.0
species: 301559

301559
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Stearoyl_CoA_n_C180CoA_C39H66N7O17P3S

775334
type: SpeciesReference
stoichiometry: 1.0
species: 301587

775298
type: SpeciesReference
stoichiometry: 1.0
species: 300284

300284
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: LipidCoa

775310
type: SpeciesReference
stoichiometry: 1.0
species: 300574

300574
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Decanoyl_CoA_n_C100CoA_C31H50N7O17P3S

775407
type: SpeciesReference
stoichiometry: 1.0
species: 300990

300990
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Hexanoyl_CoA_n_C60CoA_C27H42N7O17P3S

306931
type: LocalParameter
units: 756622
value: 0.0

306929
type: LocalParameter
value: 0.0

306928
type: LocalParameter
units: 756574
value: 999999.0

306927
type: LocalParameter
units: 756574
value: -999999.0

300867
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Geranyl_diphosphate_C10H17O7P2

303857
type: Reaction
name: purine-nucleoside_phosphorylase
notes: Abbreviation: R_PUNP6 EC Number: 2.4.2.1 SUBSYSTEM: Nucleotides_PurineMetabolism ; AminoAcids_MetPolyamineMetabolism Equation: M_din[c] + M_pi[c] <==> M_2dr1p[c] + M_hxan[c] genes: LOCUS:PFE0660c# proteins: GENE ASSOCIATION: (PFE0660c)
product: 801694
kinetic law: 801706
product: 801682
reactant: 801670
fast: false
reactant: 801658
reversible: true

801694
type: SpeciesReference
stoichiometry: 1.0
species: 300984

300984
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Hypoxanthine_C5H4N4O

308973
type: LocalParameter
units: 756622
value: 0.0

308971
type: LocalParameter
value: 0.0

308970
type: LocalParameter
units: 756574
value: 999999.0

308968
type: LocalParameter
units: 756574
value: -999999.0

801682
type: SpeciesReference
stoichiometry: 1.0
species: 300064

300064
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Deoxy_D_ribose_1_phosphate_C5H9O7P

801670
type: SpeciesReference
stoichiometry: 1.0
species: 301390

801658
type: SpeciesReference
stoichiometry: 1.0
species: 300634

300634
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Deoxyinosine_C10H12N4O4

303107
type: Reaction
name: 4-(cytidine_5'-diphospho)-2-C-methyl-D-erythritol_kinase
reversible: false
notes: Abbreviation: R_CDPMEK_ap EC Number: 2.7.1.148 SUBSYSTEM: Lipids_IsoprenoidsMetabolism Equation: M_4c2me[ap] + M_atp[ap] --> M_2p4c2me[ap] + M_adp[ap] + M_h[ap] genes: LOCUS:PFE0150c# proteins: GENE ASSOCIATION: (PFE0150c)
reactant: 784620
product: 784668
reactant: 784632
product: 784656
product: 784644
fast: false
kinetic law: 784680

784620
type: SpeciesReference
stoichiometry: 1.0
species: 300216

300216
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

784668
type: SpeciesReference
stoichiometry: 1.0
species: 300909

784632
type: SpeciesReference
stoichiometry: 1.0
species: 300412

784656
type: SpeciesReference
stoichiometry: 1.0
species: 300330

784644
type: SpeciesReference
stoichiometry: 1.0
species: 300096

300096
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

307565
type: LocalParameter
units: 756622
value: 0.0

307563
type: LocalParameter
value: 0.0

307562
type: LocalParameter
units: 756574
value: 999999.0

307561
type: LocalParameter
units: 756574
value: 0.0

304646
type: Reaction
kinetic law: 815481
product: 815469
reactant: 815456
notes: Abbreviation: R_CYSLtmt EC Number: SUBSYSTEM: Transport_MT Equation: M[c] ys_L[m] <==> M[c] ys_L[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_CYSLtmt

310419
type: LocalParameter
units: 756622
value: 0.0

310418
type: LocalParameter
value: 0.0

310416
type: LocalParameter
units: 756574
value: 999999.0

310415
type: LocalParameter
units: 756574
value: -999999.0

815469
type: SpeciesReference
stoichiometry: 1.0
species: 300538

300538
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Cysteine_C3H7NO2S

815456
type: SpeciesReference
stoichiometry: 1.0
species: 300542

300542
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: L_Cysteine_C3H7NO2S

300614
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Dihydroxyacetone_phosphate_C3H5O6P

303797
type: Reaction
product: 800474
name: 5'-nucleotidase
reactant: 800437
notes: Abbreviation: R_NTD6 EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_damp[c] + M_h2o[c] --> M_dad_2[c] + M_pi[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
product: 800462
fast: false
kinetic law: 800486
reactant: 800450
reversible: false

800474
type: SpeciesReference
stoichiometry: 1.0
species: 301390

800437
type: SpeciesReference
stoichiometry: 1.0
species: 300560

300560
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dAMP_C10H12N5O6P

800462
type: SpeciesReference
stoichiometry: 1.0
species: 300550

300550
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Deoxyadenosine_C10H13N5O3

308863
type: LocalParameter
units: 756622
value: 0.0

308861
type: LocalParameter
value: 0.0

308860
type: LocalParameter
units: 756574
value: 999999.0

308858
type: LocalParameter
units: 756574
value: 0.0

800450
type: SpeciesReference
stoichiometry: 1.0
species: 300903

302873
type: Reaction
kinetic law: 779090
name: 1-acylglycerol-3-phosphate_O-acyltransferase
product: 779066
reactant: 779053
notes: Abbreviation: R_AGPAT161_ap EC Number: 2.3.1.51 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1hdec9eg3p[ap] + M_hdeACP[ap] --> M_ACP[ap] + M_pa161[ap] genes: LOCUS:PF14_0421# proteins: GENE ASSOCIATION: (PF14_0421)
product: 779078
reactant: 779041
fast: false
reversible: false

307160
type: LocalParameter
units: 756622
value: 0.0

307158
type: LocalParameter
value: 0.0

307157
type: LocalParameter
units: 756574
value: 999999.0

307156
type: LocalParameter
units: 756574
value: 0.0

779066
type: SpeciesReference
stoichiometry: 1.0
species: 300270

779053
type: SpeciesReference
stoichiometry: 1.0
species: 300949

779078
type: SpeciesReference
stoichiometry: 1.0
species: 301278

301278
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate_C35H63O8P1

779041
type: SpeciesReference
stoichiometry: 1.0
species: 300002

300002
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_hexadec_9_enoyl_sn_glycerol_3_phosphate_C19H35O7P1

301747
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Valyl_tRNA_Val_C5H10NOR

300128
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

302003
type: Reaction
reactant: 757216
reversible: false
notes: Abbreviation: R_AMPTASEPG EC Number: 3.4.11.2 SUBSYSTEM: AminoAcids_ArgProMetabolism Equation: M_h2o[c] + M_progly[c] --> M_gly[c] + M_pro_L[c] genes: LOCUS:MAL13P1_56# proteins: GENE ASSOCIATION: (MAL13P1_56)
reactant: 757204
name: membrane_alanyl_aminopeptidase
fast: false
kinetic law: 757253
product: 757229
product: 757241

757216
type: SpeciesReference
stoichiometry: 1.0
species: 301438

301438
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Prolinylglycine_C7H12N2O3

757204
type: SpeciesReference
stoichiometry: 1.0
species: 300903

304848
type: LocalParameter
units: 756622
value: 0.0

304845
type: LocalParameter
value: 0.0

304842
type: LocalParameter
units: 756574
value: 999999.0

304841
type: LocalParameter
units: 756574
value: 0.0

757229
type: SpeciesReference
stoichiometry: 1.0
species: 300841

300841
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Glycine_C2H5NO2

757241
type: SpeciesReference
stoichiometry: 1.0
species: 301434

301434
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Proline_C5H9NO2

303542
type: Reaction
name: phosphatidylglycerophosphatase
fast: false
reactant: 794985
reactant: 794973
notes: Abbreviation: R_PGPP181 EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp181[c] --> M_pg181[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
reversible: false
product: 795009
product: 794997
kinetic law: 795021

794985
type: SpeciesReference
stoichiometry: 1.0
species: 301372

301372
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_dioctadec_11_enoyl_n_C181_C42H77O13P2

794973
type: SpeciesReference
stoichiometry: 1.0
species: 300903

795009
type: SpeciesReference
stoichiometry: 1.0
species: 301390

794997
type: SpeciesReference
stoichiometry: 1.0
species: 301358

308363
type: LocalParameter
units: 756622
value: 0.0

308361
type: LocalParameter
value: 0.0

308360
type: LocalParameter
units: 756574
value: 999999.0

308358
type: LocalParameter
units: 756574
value: 0.0

303185
type: Reaction
kinetic law: 786550
reactant: 786502
product: 786526
notes: Abbreviation: R_DGAT EC Number: SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_Rtotalcoa[c] + M_dag[c] --> M[c] oa[c] + M_tag[c] genes: proteins: GENE ASSOCIATION:
fast: false
name: R_DGAT
product: 786538
reversible: false
reactant: 786514

307704
type: LocalParameter
units: 756622
value: 0.0

307703
type: LocalParameter
value: 0.0

307701
type: LocalParameter
units: 756574
value: 999999.0

307700
type: LocalParameter
units: 756574
value: 0.0

786502
type: SpeciesReference
stoichiometry: 1.0
species: 300284

786526
type: SpeciesReference
stoichiometry: 1.0
species: 300522

786538
type: SpeciesReference
stoichiometry: 1.0
species: 301581

301581
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: triacylglycerol

786514
type: SpeciesReference
stoichiometry: 1.0
species: 300556

301481
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Pyridoxamine_C8H13N2O2

300010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_octadec_11_enoyl_sn_glycerol_3_phosphate_C21H39O7P1

302137
type: Reaction
reactant: 762372
product: 762408
product: 762384
product: 762396
name: glyceraldehyde-3-phosphate_dehydrogenase_(phosphorylating)
fast: false
reactant: 762348
reversible: true
reactant: 762360
notes: Abbreviation: R_GAPD EC Number: 1.2.1.12 SUBSYSTEM: Carbohydrates_Glycolysis Equation: M_g3p[c] + M_nad[c] + M_pi[c] <==> M_13dpg[c] + M_h[c] + M_nadh[c] genes: LOCUS:PF14_0598# proteins: GENE ASSOCIATION: (PF14_0598)
kinetic law: 762420

762372
type: SpeciesReference
stoichiometry: 1.0
species: 301390

762408
type: SpeciesReference
stoichiometry: 1.0
species: 301136

762384
type: SpeciesReference
stoichiometry: 1.0
species: 299966

299966
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Phospho_D_glyceroyl_phosphate_C3H4O10P2

762396
type: SpeciesReference
stoichiometry: 1.0
species: 300911

762348
type: SpeciesReference
stoichiometry: 1.0
species: 300771

762360
type: SpeciesReference
stoichiometry: 1.0
species: 301130

305422
type: LocalParameter
units: 756622
value: 0.0

305419
type: LocalParameter
value: 0.0

305416
type: LocalParameter
units: 756574
value: 999999.0

305413
type: LocalParameter
units: 756574
value: -999999.0

302970
type: Reaction
product: 781948
name: glycerol-3-phosphate_O-acyltransferase
fast: false
product: 781936
reversible: false
reactant: 781911
reactant: 781923
kinetic law: 781960
notes: Abbreviation: R_G3PAT120_ap EC Number: 2.3.1.15 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_ddcaACP[ap] + M_glyc3p[ap] --> M_1ddecg3p[ap] + M_ACP[ap] genes: LOCUS:PF13_0100# LOCUS:PFL0620c# proteins: GENE ASSOCIATION: (PF13_0100) or (PFL0620c)

781948
type: SpeciesReference
stoichiometry: 1.0
species: 300270

781936
type: SpeciesReference
stoichiometry: 1.0
species: 299998

299998
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_dodecanoyl_sn_glycerol_3_phosphate_C15H29O7P1

781911
type: SpeciesReference
stoichiometry: 1.0
species: 300590

300590
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Dodecanoyl_ACP_n_C120ACP_C23H43N2O8PRS

781923
type: SpeciesReference
stoichiometry: 1.0
species: 300849

307329
type: LocalParameter
units: 756622
value: 0.0

307327
type: LocalParameter
value: 0.0

307326
type: LocalParameter
units: 756574
value: 999999.0

307324
type: LocalParameter
units: 756574
value: 0.0

301860
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Reduced_glutathione_C10H16N3O6S

302081
type: Reaction
reactant: 760369
fast: false
name: Ornithine_decarboxylase
notes: Abbreviation: R_ORNDC EC Number: 4.1.1.17 SUBSYSTEM: AminoAcids_MetPolyamineMetabolism Equation: M_h[c] + M_orn[c] --> M[c] o2[c] + M_ptrc[c] genes: LOCUS:PF10_0322# proteins: GENE ASSOCIATION: (PF10_0322)
reactant: 760381
product: 760393
kinetic law: 760417
product: 760405
reversible: false

760369
type: SpeciesReference
stoichiometry: 1.0
species: 300911

760381
type: SpeciesReference
stoichiometry: 1.0
species: 301248

301248
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Ornithine_C5H13N2O2

760393
type: SpeciesReference
stoichiometry: 1.0
species: 300514

305166
type: LocalParameter
units: 756622
value: 0.0

305163
type: LocalParameter
value: 0.0

305160
type: LocalParameter
units: 756574
value: 999999.0

305159
type: LocalParameter
units: 756574
value: 0.0

760405
type: SpeciesReference
stoichiometry: 1.0
species: 301473

301473
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Putrescine_C4H14N2

302512
type: Reaction
kinetic law: 772261
product: 772248
reactant: 772236
notes: Abbreviation: R_EX_fum_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_fum <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_fum_e_

306524
type: LocalParameter
units: 756622
value: 0.0

306523
type: LocalParameter
value: 0.0

306522
type: LocalParameter
units: 756574
value: 999999.0

306520
type: LocalParameter
units: 756574
value: -999999.0

772248
type: SpeciesReference
stoichiometry: 1.0
species: 301838

301838
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Fumarate_C4H2O4

772236
type: SpeciesReference
stoichiometry: 1.0
species: 300759

300759
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Fumarate_C4H2O4

302626
type: Reaction
kinetic law: 773724
product: 773711
reactant: 773698
notes: Abbreviation: R_EX_o2_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_o2 <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_o2_e_

306729
type: LocalParameter
units: 756622
value: 0.0

306728
type: LocalParameter
value: 0.0

306727
type: LocalParameter
units: 756574
value: 999999.0

306725
type: LocalParameter
units: 756574
value: -999999.0

773711
type: SpeciesReference
stoichiometry: 1.0
species: 301918

301918
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: O2_O2

773698
type: SpeciesReference
stoichiometry: 1.0
species: 301188

301188
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: O2_O2

300532
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: ceramide

301092
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: mannosyl-glucosaminyl-acylphosphatidylinositiol

300276
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L-Cystine_C6H12N2O4S2

300709
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Fructose_6_phosphate_C6H11O9P

304406
type: Reaction
kinetic law: 811944
product: 811932
reactant: 811920
notes: Abbreviation: R_COA6tap EC Number: SUBSYSTEM: Transport_AP Equation: M_hdcoa[ap] <==> M_hdcoa[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_COA6tap

309979
type: LocalParameter
units: 756622
value: 0.0

309978
type: LocalParameter
value: 0.0

309976
type: LocalParameter
units: 756574
value: 999999.0

309975
type: LocalParameter
units: 756574
value: -999999.0

811932
type: SpeciesReference
stoichiometry: 1.0
species: 300945

811920
type: SpeciesReference
stoichiometry: 1.0
species: 300943

301816
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyguanosine_C10H13N5O4

304781
type: Reaction
kinetic law: 817488
product: 817476
reactant: 817464
notes: Abbreviation: R_ACCOAtm EC Number: SUBSYSTEM: Transport_MT Equation: M_accoa[c] <==> M_accoa[m] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_ACCOAtm

310667
type: LocalParameter
units: 756622
value: 0.0

310665
type: LocalParameter
value: 0.0

310664
type: LocalParameter
units: 756574
value: 999999.0

310662
type: LocalParameter
units: 756574
value: -999999.0

817476
type: SpeciesReference
stoichiometry: 1.0
species: 300304

300304
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Acetyl_CoA_C23H34N7O17P3S

817464
type: SpeciesReference
stoichiometry: 1.0
species: 300302

301643
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Reduced_thioredoxin_XH2

300972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Hydroxymethylbilane_C40H38N4O17

304484
type: Reaction
kinetic law: 813059
product: 813047
reactant: 813035
notes: Abbreviation: R_DINt EC Number: SUBSYSTEM: Transport_base Equation: M_din[e] <==> M_din[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
fast: false
reversible: true
name: R_DINt

310122
type: LocalParameter
units: 756622
value: 0.0

310121
type: LocalParameter
value: 0.0

310119
type: LocalParameter
units: 756574
value: 999999.0

310118
type: LocalParameter
units: 756574
value: -999999.0

813047
type: SpeciesReference
stoichiometry: 1.0
species: 300634

813035
type: SpeciesReference
stoichiometry: 1.0
species: 300636

300636
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyinosine_C10H12N4O4

299960
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 1_2_Diacyl_sn_glycerol_dioctadecanoyl_n_C180_C39H76O5

300889
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Guanine_C5H5N5O

300957
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: hexacosanoate_n_C260_C26H51O2

300148
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Methyl_2_oxobutanoate_C5H7O3

300030
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoethanolamine_n_C120_C17H36NO7P1

300434
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

303569
type: Reaction
product: 795650
reversible: false
reactant: 795601
fast: false
name: sphingomyelin_phosphodiesterase
kinetic law: 795662
product: 795625
notes: Abbreviation: R_SMPD3l EC Number: 3.1.4.12 SUBSYSTEM: Lipids_SphingomyelinCeramideMetabolism Equation: M_h2o[c] + M_sphmyln[c] --> M[c] holp[c] + M[c] rm[c] + M_h[c] genes: LOCUS:PFL1870c# proteins: GENE ASSOCIATION: (PFL1870c)
reactant: 795613
product: 795637

795650
type: SpeciesReference
stoichiometry: 1.0
species: 300911

795601
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308412
type: LocalParameter
units: 756622
value: 0.0

308411
type: LocalParameter
value: 0.0

308409
type: LocalParameter
units: 756574
value: 999999.0

308408
type: LocalParameter
units: 756574
value: 0.0

795625
type: SpeciesReference
stoichiometry: 1.0
species: 300478

795613
type: SpeciesReference
stoichiometry: 1.0
species: 301551

301551
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: sphingomyelin

795637
type: SpeciesReference
stoichiometry: 1.0
species: 300532

304283
type: Reaction
reactant: 810148
name: R_METt2r
reactant: 810136
reversible: true
product: 810172
product: 810160
kinetic law: 810184
notes: Abbreviation: R_METt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_h[e] + M[m] et_L[e] <==> M_h[c] + M[m] et_L[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
fast: false

810148
type: SpeciesReference
stoichiometry: 1.0
species: 301086

301086
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Methionine_C5H11NO2S

810136
type: SpeciesReference
stoichiometry: 1.0
species: 300913

810172
type: SpeciesReference
stoichiometry: 1.0
species: 301084

810160
type: SpeciesReference
stoichiometry: 1.0
species: 300911

309754
type: LocalParameter
units: 756622
value: 0.0

309752
type: LocalParameter
value: 0.0

309751
type: LocalParameter
units: 756574
value: 999999.0

309749
type: LocalParameter
units: 756574
value: -999999.0

300831
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Glutamate_C5H8NO4

303611
type: Reaction
product: 796650
name: lysophospholipase
fast: false
product: 796638
kinetic law: 796662
reactant: 796626
reversible: false
reactant: 796613
notes: Abbreviation: R_LPLIPAL2ATE120 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpe120[c] + M_pg120[c] --> M[ap] g120[c] + M_g3pe[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)

796650
type: SpeciesReference
stoichiometry: 1.0
species: 300775

796638
type: SpeciesReference
stoichiometry: 1.0
species: 300376

300376
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: acyl_phosphatidylglycerol_n_C120_C42H80O11P

308489
type: LocalParameter
units: 756622
value: 0.0

308488
type: LocalParameter
value: 0.0

308486
type: LocalParameter
units: 756574
value: 999999.0

308485
type: LocalParameter
units: 756574
value: 0.0

796626
type: SpeciesReference
stoichiometry: 1.0
species: 301346

301346
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_didodecanoyl_n_C120_C30H58O10P1

796613
type: SpeciesReference
stoichiometry: 1.0
species: 300030

303914
type: Reaction
notes: Abbreviation: R_ATPHs EC Number: SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_atp[c] + M_h[c] + M_h2o[c] --> M_itp[c] + M_nh4[c] genes: proteins: GENE ASSOCIATION:
reversible: false
product: 803021
product: 803033
reactant: 802984
kinetic law: 803045
reactant: 803008
name: R_ATPHs
fast: false
reactant: 802996

803021
type: SpeciesReference
stoichiometry: 1.0
species: 301022

301022
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: ITP_C10H11N4O14P3

803033
type: SpeciesReference
stoichiometry: 1.0
species: 301160

802984
type: SpeciesReference
stoichiometry: 1.0
species: 300414

309077
type: LocalParameter
units: 756622
value: 0.0

309076
type: LocalParameter
value: 0.0

309074
type: LocalParameter
units: 756574
value: 999999.0

309073
type: LocalParameter
units: 756574
value: 0.0

803008
type: SpeciesReference
stoichiometry: 1.0
species: 300903

802996
type: SpeciesReference
stoichiometry: 1.0
species: 300911

301008
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: myo_Inositol_C6H12O6

303725
type: Reaction
kinetic law: 798992
reactant: 798944
reversible: true
name: guanylate_kinase
notes: Abbreviation: R_GK1 EC Number: 2.7.4.8 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_atp[c] + M_gmp[c] <==> M_adp[c] + M_gdp[c] genes: LOCUS:PFI1420w# proteins: GENE ASSOCIATION: (PFI1420w)
product: 798980
reactant: 798956
product: 798968
fast: false

308731
type: LocalParameter
units: 756622
value: 0.0

308729
type: LocalParameter
value: 0.0

308728
type: LocalParameter
units: 756574
value: 999999.0

308726
type: LocalParameter
units: 756574
value: -999999.0

798944
type: SpeciesReference
stoichiometry: 1.0
species: 300414

798980
type: SpeciesReference
stoichiometry: 1.0
species: 300801

300801
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: GDP_C10H12N5O11P2

798956
type: SpeciesReference
stoichiometry: 1.0
species: 300861

300861
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: GMP_C10H12N5O8P

798968
type: SpeciesReference
stoichiometry: 1.0
species: 300332

301791
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Aspartate_C4H6NO4

302205
type: Reaction
kinetic law: 764436
reactant: 764400
reversible: true
reactant: 764388
fast: false
product: 764412
notes: Abbreviation: R_TKT1 EC Number: 2.2.1.1 SUBSYSTEM: Carbohydrates_PentosePhosphateCycle Equation: M_r5p[c] + M_xu5p_D[c] <==> M_g3p[c] + M_s7p[c] genes: LOCUS:PFF0530w# proteins: GENE ASSOCIATION: (PFF0530w)
product: 764424
name: transketolase

305789
type: LocalParameter
units: 756622
value: 0.0

305786
type: LocalParameter
value: 0.0

305783
type: LocalParameter
units: 756574
value: 999999.0

305780
type: LocalParameter
units: 756574
value: -999999.0

764400
type: SpeciesReference
stoichiometry: 1.0
species: 301767

301767
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Xylulose_5_phosphate_C5H9O8P

764388
type: SpeciesReference
stoichiometry: 1.0
species: 301511

301511
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha_D_Ribose_5_phosphate_C5H9O8P

764412
type: SpeciesReference
stoichiometry: 1.0
species: 300771

764424
type: SpeciesReference
stoichiometry: 1.0
species: 301519

300727
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Fe3_Fe

303386
type: Reaction
product: 791394
kinetic law: 791406
fast: false
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL2G180 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpg180[c] + M_h2o[c] --> M_g3pg[c] + M_h[c] + M_ocdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 791346
reactant: 791358
product: 791382
product: 791370
reversible: false

791394
type: SpeciesReference
stoichiometry: 1.0
species: 301214

308077
type: LocalParameter
units: 756622
value: 0.0

308075
type: LocalParameter
value: 0.0

308074
type: LocalParameter
units: 756574
value: 999999.0

308072
type: LocalParameter
units: 756574
value: 0.0

791346
type: SpeciesReference
stoichiometry: 1.0
species: 300054

300054
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoglycerol_n_C180_C24H48O9P1

791358
type: SpeciesReference
stoichiometry: 1.0
species: 300903

791382
type: SpeciesReference
stoichiometry: 1.0
species: 300911

791370
type: SpeciesReference
stoichiometry: 1.0
species: 300777

303089
type: Reaction
reversible: false
notes: Abbreviation: R_MI1PP EC Number: 3.1.3.25 SUBSYSTEM: Lipids_InositolPhosphateMetabolism Equation: M_h2o[c] + M[m] i1p_D[c] --> M_inost[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
product: 784259
fast: false
reactant: 784235
kinetic law: 784283
name: inositol-phosphate_phosphatase
product: 784271
reactant: 784247

784259
type: SpeciesReference
stoichiometry: 1.0
species: 301008

784235
type: SpeciesReference
stoichiometry: 1.0
species: 300903

307533
type: LocalParameter
units: 756622
value: 0.0

307532
type: LocalParameter
value: 0.0

307530
type: LocalParameter
units: 756574
value: 999999.0

307529
type: LocalParameter
units: 756574
value: 0.0

784271
type: SpeciesReference
stoichiometry: 1.0
species: 301390

784247
type: SpeciesReference
stoichiometry: 1.0
species: 301106

301106
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D_myo_Inositol_1_phosphate_C6H11O9P

302283
type: Reaction
product: 767221
reactant: 767149
reactant: 767161
fast: false
kinetic law: 767246
reactant: 767185
reactant: 767173
name: nicotinate_phosphoribosyltransferase
reversible: false
notes: Abbreviation: R_NAMNPP EC Number: 2.4.2.11 SUBSYSTEM: Cofactors_NicotinateNicotinamideMetabolism Equation: M_atp[c] + M_h2o[c] + M_nac[c] + M_prpp[c] --> M_adp[c] + M_nicrnt[c] + M_pi[c] + M_ppi[c] genes: LOCUS:PFF1410c# proteins: GENE ASSOCIATION: (PFF1410c)
product: 767209
product: 767233
product: 767197

767221
type: SpeciesReference
stoichiometry: 1.0
species: 301390

767149
type: SpeciesReference
stoichiometry: 1.0
species: 300414

767161
type: SpeciesReference
stoichiometry: 1.0
species: 300903

306069
type: LocalParameter
units: 756622
value: 0.0

306068
type: LocalParameter
value: 0.0

306067
type: LocalParameter
units: 756574
value: 999999.0

306065
type: LocalParameter
units: 756574
value: 0.0

767185
type: SpeciesReference
stoichiometry: 1.0
species: 301442

301442
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_Phospho_alpha_D_ribose_1_diphosphate_C5H8O14P3

767173
type: SpeciesReference
stoichiometry: 1.0
species: 301124

301124
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Nicotinate_C6H4NO2

767209
type: SpeciesReference
stoichiometry: 1.0
species: 301166

301166
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Nicotinate_D_ribonucleotide_C11H12NO9P

767233
type: SpeciesReference
stoichiometry: 1.0
species: 301416

767197
type: SpeciesReference
stoichiometry: 1.0
species: 300332

300554
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dADP_C10H12N5O9P2

304055
type: Reaction
product: 806261
product: 806274
name: Protein_disulfide-isomerase
notes: Abbreviation: R_DSBAO1 EC Number: 5.3.4.1 SUBSYSTEM: Redox_RedoxMetabolism Equation: M_q8[c] + M_dsbard[e] --> M_q8h2[c] + M_dsbaox[e] genes: LOCUS:MAL8P1_17# LOCUS:PF11_0352# LOCUS:PF13_0272# LOCUS:PF14_0694# LOCUS:PFI0950w# proteins: GENE ASSOCIATION: (MAL8P1_17) or (PF11_0352) or (PF13_0272) or (PF14_0694) or (PFI0950w)
kinetic law: 806286
fast: false
reversible: false
reactant: 806237
reactant: 806249

806261
type: SpeciesReference
stoichiometry: 1.0
species: 301503

301503
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Ubiquinol_8_C49H76O4

806274
type: SpeciesReference
stoichiometry: 1.0
species: 300662

309336
type: LocalParameter
units: 756622
value: 0.0

309334
type: LocalParameter
value: 0.0

309333
type: LocalParameter
units: 756574
value: 999999.0

309331
type: LocalParameter
units: 756574
value: 0.0

806237
type: SpeciesReference
stoichiometry: 1.0
species: 301499

301499
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Ubiquinone_8_C49H74O4

806249
type: SpeciesReference
stoichiometry: 1.0
species: 300664

300664
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: periplasmic_protein_disulfide_isomerase_I_reduced_XH2

301036
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Leucine_C6H13NO2

300825
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Glutamate_5_semialdehyde_C5H9NO3

301430
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Protoporphyrinogen_IX_C34H38N4O4

302817
type: Reaction
kinetic law: 777614
reactant: 777566
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
reversible: true
reactant: 777578
fast: false
notes: Abbreviation: R_3OAR40_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_actACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3haACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777554
product: 777602
product: 777590

307063
type: LocalParameter
units: 756622
value: 0.0

307061
type: LocalParameter
value: 0.0

307060
type: LocalParameter
units: 756574
value: 999999.0

307059
type: LocalParameter
units: 756574
value: -999999.0

777566
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777578
type: SpeciesReference
stoichiometry: 1.0
species: 301146

777554
type: SpeciesReference
stoichiometry: 1.0
species: 300320

777602
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777590
type: SpeciesReference
stoichiometry: 1.0
species: 300122

300122
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

301294
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Pantetheine_4_phosphate_C11H21N2O7PS

302791
type: Reaction
reactant: 776903
reactant: 776915
fast: false
kinetic law: 776964
product: 776952
product: 776939
reactant: 776927
notes: Abbreviation: R_3OAR100_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3odecACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hdecACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reversible: true
name: 3-oxoacyl-[acyl-carrier-protein]_reductase

776903
type: SpeciesReference
stoichiometry: 1.0
species: 300170

300170
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

776915
type: SpeciesReference
stoichiometry: 1.0
species: 300909

307018
type: LocalParameter
units: 756622
value: 0.0

307016
type: LocalParameter
value: 0.0

307015
type: LocalParameter
units: 756574
value: 999999.0

307014
type: LocalParameter
units: 756574
value: -999999.0

776952
type: SpeciesReference
stoichiometry: 1.0
species: 301140

776939
type: SpeciesReference
stoichiometry: 1.0
species: 300134

300134
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

776927
type: SpeciesReference
stoichiometry: 1.0
species: 301146

303014
type: Reaction
kinetic law: 782807
product: 782794
product: 782782
reactant: 782770
notes: Abbreviation: R_3HAD161_ap EC Number: 4.2.1.61 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3hcpalm9eACP[ap] --> M_h2o[ap] + M_t3c9palmeACP[ap] genes: LOCUS:PF13_0128# proteins: GENE ASSOCIATION: (PF13_0128)
fast: false
reversible: false
name: 3-Hydroxypalmitoyl-[acyl-carrier-protein]_dehydratase

307406
type: LocalParameter
units: 756622
value: 0.0

307404
type: LocalParameter
value: 0.0

307403
type: LocalParameter
units: 756574
value: 999999.0

307402
type: LocalParameter
units: 756574
value: 0.0

782794
type: SpeciesReference
stoichiometry: 1.0
species: 301577

782782
type: SpeciesReference
stoichiometry: 1.0
species: 300901

782770
type: SpeciesReference
stoichiometry: 1.0
species: 300128

301661
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_His_R

304553
type: Reaction
product: 813982
fast: false
reactant: 813946
reversible: false
product: 813970
kinetic law: 813994
name: R_5AOPt2
notes: Abbreviation: R_5AOPt2 EC Number: SUBSYSTEM: Transport_cofactpr Equation: M_5aop[e] + M_h[e] --> M_5aop[c] + M_h[c] genes: proteins: GENE ASSOCIATION:
reactant: 813958

813982
type: SpeciesReference
stoichiometry: 1.0
species: 300911

813946
type: SpeciesReference
stoichiometry: 1.0
species: 300246

300246
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 5_Amino_4_oxopentanoate_C5H9NO3

813970
type: SpeciesReference
stoichiometry: 1.0
species: 300244

300244
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_Amino_4_oxopentanoate_C5H9NO3

310249
type: LocalParameter
units: 756622
value: 0.0

310247
type: LocalParameter
value: 0.0

310246
type: LocalParameter
units: 756574
value: 999999.0

310244
type: LocalParameter
units: 756574
value: 0.0

813958
type: SpeciesReference
stoichiometry: 1.0
species: 300913

302932
type: Reaction
name: Long-chain-fatty-acid-CoA_ligase
product: 780556
reactant: 780544
kinetic law: 780593
reactant: 780520
fast: false
product: 780568
reversible: false
reactant: 780532
notes: Abbreviation: R_FACOAL161t2pp_ap EC Number: 6.2.1.3 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_SphingomyelinCeramideMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_atp[ap] + M[c] oa[ap] + M_hdcea[ap] --> M_amp[ap] + M_hdcoa[ap] + M_ppi[ap] genes: LOCUS:MAL13P1_485# LOCUS:PF07_0129# LOCUS:PF14_0751# LOCUS:PF14_0761# LOCUS:PFB0685c# LOCUS:PFB0695c# LOCUS:PFC0050c# LOCUS:PFD0085c# LOCUS:PFE1250w# LOCUS:PFF0945c# LOCUS:PFL1880w# LOCUS:PFL2570w# proteins: GENE ASSOCIATION: (MAL13P1_485) or (PF07_0129) or (PF14_0751) or (PF14_0761) or (PFB0685c) or (PFB0695c) or (PFC0050c) or (PFD0085c) or (PFE1250w) or (PFF0945c) or (PFL1880w) or (PFL2570w)
product: 780580

780556
type: SpeciesReference
stoichiometry: 1.0
species: 300368

780544
type: SpeciesReference
stoichiometry: 1.0
species: 300937

300937
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Hexadecenoate_n_C161_C16H29O2

307260
type: LocalParameter
units: 756622
value: 0.0

307258
type: LocalParameter
value: 0.0

307257
type: LocalParameter
units: 756574
value: 999999.0

307256
type: LocalParameter
units: 756574
value: 0.0

780520
type: SpeciesReference
stoichiometry: 1.0
species: 300412

780568
type: SpeciesReference
stoichiometry: 1.0
species: 300943

780532
type: SpeciesReference
stoichiometry: 1.0
species: 300520

780580
type: SpeciesReference
stoichiometry: 1.0
species: 301414

304352
type: Reaction
kinetic law: 811285
product: 811272
reactant: 811259
notes: Abbreviation: R_PA181tap EC Number: SUBSYSTEM: Transport_AP Equation: M_pa181[ap] <==> M_pa181[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PA181tap

309880
type: LocalParameter
units: 756622
value: 0.0

309879
type: LocalParameter
value: 0.0

309877
type: LocalParameter
units: 756574
value: 999999.0

309876
type: LocalParameter
units: 756574
value: -999999.0

811272
type: SpeciesReference
stoichiometry: 1.0
species: 301288

811259
type: SpeciesReference
stoichiometry: 1.0
species: 301286

301286
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate_C39H71O8P1

300853
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Glycerol_3_phosphate_C3H7O6P

302043
type: Reaction
fast: false
reversible: true
product: 758969
kinetic law: 758993
reactant: 758945
reactant: 758957
product: 758981
name: branched-chain-amino-acid_transaminase
notes: Abbreviation: R_ILETA EC Number: 2.6.1.42 SUBSYSTEM: AminoAcids_LeuIleValMetabolism Equation: M_akg[c] + M_ile_L[c] <==> M_3mop[c] + M_glu_L[c] genes: LOCUS:PF14_0557# proteins: GENE ASSOCIATION: (PF14_0557)

758969
type: SpeciesReference
stoichiometry: 1.0
species: 300152

300152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: _S_3_Methyl_2_oxopentanoate_C6H9O3

305008
type: LocalParameter
units: 756622
value: 0.0

305005
type: LocalParameter
value: 0.0

305002
type: LocalParameter
units: 756574
value: 999999.0

305001
type: LocalParameter
units: 756574
value: -999999.0

758945
type: SpeciesReference
stoichiometry: 1.0
species: 300346

300346
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Oxoglutarate_C5H4O5

758957
type: SpeciesReference
stoichiometry: 1.0
species: 301000

301000
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Isoleucine_C6H13NO2

758981
type: SpeciesReference
stoichiometry: 1.0
species: 300829

302177
type: Reaction
product: 763625
fast: false
name: hexokinase
reactant: 763613
reversible: false
notes: Abbreviation: R_HEX8 EC Number: 2.7.1.1 SUBSYSTEM: Carbohydrates_MannoseFructoseMetabolism ; Carbohydrates_Glycolysis Equation: M_atp[c] + M[m] an[c] --> M_adp[c] + M[m] an6p[c] + M_h[c] genes: LOCUS:PFF1155w# proteins: GENE ASSOCIATION: (PFF1155w)
product: 763649
kinetic law: 763661
reactant: 763601
product: 763637

763625
type: SpeciesReference
stoichiometry: 1.0
species: 300332

763613
type: SpeciesReference
stoichiometry: 1.0
species: 301080

301080
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Mannose_C6H12O6

763649
type: SpeciesReference
stoichiometry: 1.0
species: 300911

305622
type: LocalParameter
units: 756622
value: 0.0

305619
type: LocalParameter
value: 0.0

305616
type: LocalParameter
units: 756574
value: 999999.0

305613
type: LocalParameter
units: 756574
value: 0.0

763601
type: SpeciesReference
stoichiometry: 1.0
species: 300414

763637
type: SpeciesReference
stoichiometry: 1.0
species: 301078

301078
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Mannose_6_phosphate_C6H11O9P

301910
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nicotinamide_C6H6N2O

301316
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_ditetradec_7_enoyl_n_C141_C33H62N1O8P1

301659
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Gly_R

300988
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Hexanoyl_CoA_n_C60CoA_C27H42N7O17P3S

303158
type: Reaction
reactant: 785859
notes: Abbreviation: R_DAGK180 EC Number: 2.7.1.107 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_12dgr180[c] + M_atp[c] --> M_adp[c] + M_h[c] + M_pa180[c] genes: LOCUS:PF14_0681# LOCUS:PFI1485c# proteins: GENE ASSOCIATION: (PF14_0681) or (PFI1485c)
product: 785871
reversible: false
reactant: 785847
kinetic law: 785907
product: 785895
name: diacylglycerol_kinase
product: 785883
fast: false

785859
type: SpeciesReference
stoichiometry: 1.0
species: 300414

785871
type: SpeciesReference
stoichiometry: 1.0
species: 300332

785847
type: SpeciesReference
stoichiometry: 1.0
species: 299958

299958
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_dioctadecanoyl_n_C180_C39H76O5

307655
type: LocalParameter
units: 756622
value: 0.0

307654
type: LocalParameter
value: 0.0

307652
type: LocalParameter
units: 756574
value: 999999.0

307651
type: LocalParameter
units: 756574
value: 0.0

785895
type: SpeciesReference
stoichiometry: 1.0
species: 301284

785883
type: SpeciesReference
stoichiometry: 1.0
species: 300911

301541
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Shikimate_5_phosphate_C7H8O8P

300572
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Decanoyl_CoA_n_C100CoA_C31H50N7O17P3S

300406
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Aspartate_C4H6NO4

301452
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

301856
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Guanosine_C10H13N5O5

304112
type: Reaction
kinetic law: 807273
product: 807261
reactant: 807249
notes: Abbreviation: R_GAM6Pt EC Number: SUBSYSTEM: Transport Equation: M_gam6p[e] <==> M_gam6p[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_GAM6Pt

309440
type: LocalParameter
units: 756622
value: 0.0

309439
type: LocalParameter
value: 0.0

309437
type: LocalParameter
units: 756574
value: 999999.0

309436
type: LocalParameter
units: 756574
value: -999999.0

807261
type: SpeciesReference
stoichiometry: 1.0
species: 300789

300789
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Glucosamine_6_phosphate_C6H13NO8P

807249
type: SpeciesReference
stoichiometry: 1.0
species: 300791

300791
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Glucosamine_6_phosphate_C6H13NO8P

300843
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Glycine_C2H5NO2

303773
type: Reaction
notes: Abbreviation: R_NTD2 EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_h2o[c] + M_ump[c] --> M_pi[c] + M_uri[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
product: 799979
reactant: 799967
name: 5'-nucleotidase
product: 799991
reversible: false
kinetic law: 800003
fast: false
reactant: 799955

799979
type: SpeciesReference
stoichiometry: 1.0
species: 301390

799967
type: SpeciesReference
stoichiometry: 1.0
species: 301723

799991
type: SpeciesReference
stoichiometry: 1.0
species: 301737

301737
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Uridine_C9H12N2O6

308819
type: LocalParameter
units: 756622
value: 0.0

308817
type: LocalParameter
value: 0.0

308816
type: LocalParameter
units: 756574
value: 999999.0

308814
type: LocalParameter
units: 756574
value: 0.0

799955
type: SpeciesReference
stoichiometry: 1.0
species: 300903

303476
type: Reaction
fast: false
product: 793549
kinetic law: 793587
product: 793574
notes: Abbreviation: R_CLPNH181pp EC Number: SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M[c] lpn181[c] + M_h2o[c] --> M_h[c] + M_pa181[c] + M_pg181[c] genes: proteins: GENE ASSOCIATION:
reactant: 793537
product: 793561
name: R_CLPNH181pp
reversible: false
reactant: 793525

793549
type: SpeciesReference
stoichiometry: 1.0
species: 300911

308242
type: LocalParameter
units: 756622
value: 0.0

308240
type: LocalParameter
value: 0.0

308239
type: LocalParameter
units: 756574
value: 999999.0

308237
type: LocalParameter
units: 756574
value: 0.0

793574
type: SpeciesReference
stoichiometry: 1.0
species: 301358

793537
type: SpeciesReference
stoichiometry: 1.0
species: 300903

793561
type: SpeciesReference
stoichiometry: 1.0
species: 301288

793525
type: SpeciesReference
stoichiometry: 1.0
species: 300506

300506
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: cardiolipin_tetraoctadec_11_enoyl_n_C181_C81H148O17P2

300188
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

302427
type: Reaction
kinetic law: 771171
product: 771159
reactant: 771147
notes: Abbreviation: R_EX_acald_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_acald <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_acald_e_

306374
type: LocalParameter
units: 756622
value: 0.0

306373
type: LocalParameter
value: 0.0

306372
type: LocalParameter
units: 756574
value: 999999.0

306370
type: LocalParameter
units: 756574
value: -999999.0

771159
type: SpeciesReference
stoichiometry: 1.0
species: 301777

301777
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Acetaldehyde_C2H4O

771147
type: SpeciesReference
stoichiometry: 1.0
species: 300298

300298
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Acetaldehyde_C2H4O

303851
type: Reaction
reactant: 801550
reactant: 801538
kinetic law: 801586
product: 801574
reversible: true
name: purine-nucleoside_phosphorylase
fast: false
notes: Abbreviation: R_PUNP4 EC Number: 2.4.2.1 SUBSYSTEM: Nucleotides_PurineMetabolism ; AminoAcids_MetPolyamineMetabolism Equation: M_dgsn[c] + M_pi[c] <==> M_2dr1p[c] + M_gua[c] genes: LOCUS:PFE0660c# proteins: GENE ASSOCIATION: (PFE0660c)
product: 801562

801550
type: SpeciesReference
stoichiometry: 1.0
species: 301390

801538
type: SpeciesReference
stoichiometry: 1.0
species: 300608

308962
type: LocalParameter
units: 756622
value: 0.0

308960
type: LocalParameter
value: 0.0

308959
type: LocalParameter
units: 756574
value: 999999.0

308957
type: LocalParameter
units: 756574
value: -999999.0

801574
type: SpeciesReference
stoichiometry: 1.0
species: 300889

801562
type: SpeciesReference
stoichiometry: 1.0
species: 300064

304379
type: Reaction
kinetic law: 811618
product: 811606
reactant: 811594
notes: Abbreviation: R_ATPtap EC Number: SUBSYSTEM: Transport_AP Equation: M_atp[ap] <==> M_atp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_ATPtap

309930
type: LocalParameter
units: 756622
value: 0.0

309928
type: LocalParameter
value: 0.0

309927
type: LocalParameter
units: 756574
value: 999999.0

309925
type: LocalParameter
units: 756574
value: -999999.0

811606
type: SpeciesReference
stoichiometry: 1.0
species: 300414

811594
type: SpeciesReference
stoichiometry: 1.0
species: 300412

302446
type: Reaction
kinetic law: 771425
product: 771413
reactant: 771401
notes: Abbreviation: R_EX_asp_L_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_asp_L <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_asp_L_e_

306409
type: LocalParameter
units: 756622
value: 0.0

306408
type: LocalParameter
value: 0.0

306407
type: LocalParameter
units: 756574
value: 999999.0

306405
type: LocalParameter
units: 756574
value: -999999.0

771413
type: SpeciesReference
stoichiometry: 1.0
species: 301791

771401
type: SpeciesReference
stoichiometry: 1.0
species: 300406

301336
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

304754
type: Reaction
notes: Abbreviation: R_PUNP8 EC Number: 2.4.2.1 SUBSYSTEM: AminoAcids_MetPolyamineMetabolism Equation: M_5mti[c] + M_pi[c] --> M_hxan[c] + M_5mtr1p[c] genes: LOCUS:PFE0660c# proteins: GENE ASSOCIATION: (PFE0660c)
reactant: 816823
product: 816847
reversible: false
fast: false
kinetic law: 816871
name: purine-nucleoside_phosphorylase
product: 816859
reactant: 816835

816823
type: SpeciesReference
stoichiometry: 1.0
species: 300254

300254
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_methylthioinosine_C11H14N4O4S

816847
type: SpeciesReference
stoichiometry: 1.0
species: 300984

310617
type: LocalParameter
units: 756622
value: 0.0

310616
type: LocalParameter
value: 0.0

310614
type: LocalParameter
units: 756574
value: 999999.0

310613
type: LocalParameter
units: 756574
value: 0.0

816859
type: SpeciesReference
stoichiometry: 1.0
species: 300256

816835
type: SpeciesReference
stoichiometry: 1.0
species: 301390

300871
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Guanosine_C10H13N5O5

301444
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

301848
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Glutamine_C5H10N2O3

304457
type: Reaction
name: R_PEPPItap
reactant: 812574
notes: Abbreviation: R_PEPPItap EC Number: SUBSYSTEM: Transport_AP Equation: M_pi[ap] + M_pep[c] --> M_pi[c] + M_pep[ap] genes: LOCUS:PFE1510c# proteins: GENE ASSOCIATION: (PFE1510c)
reversible: false
product: 812598
kinetic law: 812610
fast: false
reactant: 812562
product: 812586

812574
type: SpeciesReference
stoichiometry: 1.0
species: 301344

812598
type: SpeciesReference
stoichiometry: 1.0
species: 301342

301342
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Phosphoenolpyruvate_C3H2O6P

310073
type: LocalParameter
units: 756622
value: 0.0

310071
type: LocalParameter
value: 0.0

310070
type: LocalParameter
units: 756574
value: 999999.0

310068
type: LocalParameter
units: 756574
value: 0.0

812562
type: SpeciesReference
stoichiometry: 1.0
species: 301388

301388
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Phosphate_HO4P

812586
type: SpeciesReference
stoichiometry: 1.0
species: 301390

303650
type: Reaction
fast: false
name: R_LPLIPAL2ATG181
notes: Abbreviation: R_LPLIPAL2ATG181 EC Number: SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_2agpg181[c] + M_pg181[c] --> M[ap] g181[c] + M_g3pg[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
kinetic law: 797454
product: 797430
reactant: 797406
product: 797442
reversible: false
reactant: 797418

308593
type: LocalParameter
units: 756622
value: 0.0

308592
type: LocalParameter
value: 0.0

308590
type: LocalParameter
units: 756574
value: 999999.0

308589
type: LocalParameter
units: 756574
value: 0.0

797430
type: SpeciesReference
stoichiometry: 1.0
species: 300388

797406
type: SpeciesReference
stoichiometry: 1.0
species: 300056

300056
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoglycerol_n_C181_C24H46O9P1

797442
type: SpeciesReference
stoichiometry: 1.0
species: 300777

797418
type: SpeciesReference
stoichiometry: 1.0
species: 301358

302579
type: Reaction
kinetic law: 773140
product: 773128
reactant: 773116
notes: Abbreviation: R_EX_inost_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_inost <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_inost_e_

306647
type: LocalParameter
units: 756622
value: 0.0

306646
type: LocalParameter
value: 0.0

306645
type: LocalParameter
units: 756574
value: 999999.0

306643
type: LocalParameter
units: 756574
value: -999999.0

773128
type: SpeciesReference
stoichiometry: 1.0
species: 301886

301886
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: myo_Inositol_C6H12O6

773116
type: SpeciesReference
stoichiometry: 1.0
species: 301010

301010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: myo_Inositol_C6H12O6

303293
type: Reaction
product: 789062
notes: Abbreviation: R_LPLIPAL1E140pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpe140[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_ttdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reversible: false
kinetic law: 789087
fast: false
product: 789048
reactant: 789022
product: 789075
reactant: 789035
name: lysophospholipase

789062
type: SpeciesReference
stoichiometry: 1.0
species: 300911

307901
type: LocalParameter
units: 756622
value: 0.0

307899
type: LocalParameter
value: 0.0

307898
type: LocalParameter
units: 756574
value: 999999.0

307896
type: LocalParameter
units: 756574
value: 0.0

789048
type: SpeciesReference
stoichiometry: 1.0
species: 300775

789022
type: SpeciesReference
stoichiometry: 1.0
species: 299972

299972
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C140_C19H40NO7P1

789075
type: SpeciesReference
stoichiometry: 1.0
species: 301697

789035
type: SpeciesReference
stoichiometry: 1.0
species: 300903

299992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoglycerol_n_C161_C22H42O9P1

302245
type: Reaction
product: 765797
product: 765773
name: dephospho-CoA_kinase
reversible: false
reactant: 765761
reactant: 765749
fast: false
kinetic law: 765809
product: 765785
notes: Abbreviation: R_DPCOAK_ap EC Number: 2.7.1.24 SUBSYSTEM: Cofactors_CoABiosynthesis Equation: M_atp[ap] + M_dpcoa[ap] --> M_adp[ap] + M[c] oa[ap] + M_h[ap] genes: LOCUS:PF14_0415# proteins: GENE ASSOCIATION: (PF14_0415)

765797
type: SpeciesReference
stoichiometry: 1.0
species: 300909

765773
type: SpeciesReference
stoichiometry: 1.0
species: 300330

765761
type: SpeciesReference
stoichiometry: 1.0
species: 300658

300658
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Dephospho_CoA_C21H33N7O13P2S

765749
type: SpeciesReference
stoichiometry: 1.0
species: 300412

305969
type: LocalParameter
units: 756622
value: 0.0

305968
type: LocalParameter
value: 0.0

305967
type: LocalParameter
units: 756574
value: 999999.0

305965
type: LocalParameter
units: 756574
value: 0.0

765785
type: SpeciesReference
stoichiometry: 1.0
species: 300520

304007
type: Reaction
kinetic law: 805150
product: 805137
product: 805125
reactant: 805113
notes: Abbreviation: R_ACONTam_mt EC Number: 4.2.1.3 SUBSYSTEM: Others_MitochondrialTCACycle Equation: M[c] it[m] <==> M_acon_C[m] + M_h2o[m] genes: LOCUS:PF13_0229# proteins: GENE ASSOCIATION: (PF13_0229)
fast: false
reversible: true
name: aconitate_hydratase

309248
type: LocalParameter
units: 756622
value: 0.0

309246
type: LocalParameter
value: 0.0

309245
type: LocalParameter
units: 756574
value: 999999.0

309243
type: LocalParameter
units: 756574
value: -999999.0

805137
type: SpeciesReference
stoichiometry: 1.0
species: 300907

805125
type: SpeciesReference
stoichiometry: 1.0
species: 300318

300318
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: cis_Aconitate_C6H3O6

805113
type: SpeciesReference
stoichiometry: 1.0
species: 300492

300252
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_Methyltetrahydrofolate_C20H24N7O6

303809
type: Reaction
reactant: 800679
fast: false
reactant: 800691
product: 800703
reversible: false
product: 800715
notes: Abbreviation: R_NTD8 EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_dgmp[c] + M_h2o[c] --> M_dgsn[c] + M_pi[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
name: 5'-nucleotidase
kinetic law: 800727

800679
type: SpeciesReference
stoichiometry: 1.0
species: 300606

800691
type: SpeciesReference
stoichiometry: 1.0
species: 300903

800703
type: SpeciesReference
stoichiometry: 1.0
species: 300608

800715
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308885
type: LocalParameter
units: 756622
value: 0.0

308883
type: LocalParameter
value: 0.0

308882
type: LocalParameter
units: 756574
value: 999999.0

308880
type: LocalParameter
units: 756574
value: 0.0

300767
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha-D-Glucosyl)3-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol

302620
type: Reaction
kinetic law: 773649
product: 773636
reactant: 773624
notes: Abbreviation: R_EX_no2_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_no2 <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_no2_e_

306718
type: LocalParameter
units: 756622
value: 0.0

306716
type: LocalParameter
value: 0.0

306715
type: LocalParameter
units: 756574
value: 999999.0

306714
type: LocalParameter
units: 756574
value: -999999.0

773636
type: SpeciesReference
stoichiometry: 1.0
species: 301914

301914
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nitrite_NO2

773624
type: SpeciesReference
stoichiometry: 1.0
species: 301170

301170
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nitrite_NO2

303227
type: Reaction
kinetic law: 787482
product: 787469
reactant: 787421
product: 787457
reactant: 787433
name: CDP-diacylglycerol-serine_O-phosphatidyltransferase
notes: Abbreviation: R_PSSA161 EC Number: 2.7.8.8 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] dpdhdec9eg[c] + M_ser_L[c] --> M[c] mp[c] + M_h[c] + M_ps161[c] genes: LOCUS:MAL13P1_335# proteins: GENE ASSOCIATION: (MAL13P1_335)
product: 787445
fast: false
reversible: false

307780
type: LocalParameter
units: 756622
value: 0.0

307778
type: LocalParameter
value: 0.0

307777
type: LocalParameter
units: 756574
value: 999999.0

307775
type: LocalParameter
units: 756574
value: 0.0

787469
type: SpeciesReference
stoichiometry: 1.0
species: 301452

787421
type: SpeciesReference
stoichiometry: 1.0
species: 300448

300448
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

787457
type: SpeciesReference
stoichiometry: 1.0
species: 300911

787433
type: SpeciesReference
stoichiometry: 1.0
species: 301533

787445
type: SpeciesReference
stoichiometry: 1.0
species: 300510

301876
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Homocysteine

302457
type: Reaction
kinetic law: 771572
product: 771560
reactant: 771548
notes: Abbreviation: R_EX_co2_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M[c] o2 <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_co2_e_

306429
type: LocalParameter
units: 756622
value: 0.0

306428
type: LocalParameter
value: 0.0

306427
type: LocalParameter
units: 756574
value: 999999.0

306425
type: LocalParameter
units: 756574
value: -999999.0

771560
type: SpeciesReference
stoichiometry: 1.0
species: 301799

301799
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: CO2_CO2

771548
type: SpeciesReference
stoichiometry: 1.0
species: 300516

300516
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: CO2_CO2

302743
type: Reaction
product: 775516
reversible: true
product: 775503
reactant: 775443
product: 775528
product: 775491
product: 775467
kinetic law: 775540
product: 775479
name: R_lipid3
product: 775455
fast: false
notes: Abbreviation: R_lipid3 EC Number: SUBSYSTEM: Lipids Equation: M_dag[c] <==> M_12dgr120[c] + M_12dgr140[c] + M_12dgr141[c] + M_12dgr160[c] + M_12dgr161[c] + M_12dgr180[c] + M_12dgr181[c] genes: proteins: GENE ASSOCIATION:

775516
type: SpeciesReference
stoichiometry: 1.0
species: 299958

775503
type: SpeciesReference
stoichiometry: 1.0
species: 299954

299954
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_dihexadec_9_enoyl_n_C161_C35H64O5

775443
type: SpeciesReference
stoichiometry: 1.0
species: 300556

775528
type: SpeciesReference
stoichiometry: 1.0
species: 299962

775491
type: SpeciesReference
stoichiometry: 1.0
species: 299950

299950
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_dihexadecanoyl_n_C160_C35H68O5

775467
type: SpeciesReference
stoichiometry: 1.0
species: 299942

306936
type: LocalParameter
units: 756622
value: 0.0

306934
type: LocalParameter
value: 0.0

306933
type: LocalParameter
units: 756574
value: 999999.0

306932
type: LocalParameter
units: 756574
value: -999999.0

775479
type: SpeciesReference
stoichiometry: 1.0
species: 299946

299946
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_ditetradec_7_enoyl_n_C141_C31H56O5

775455
type: SpeciesReference
stoichiometry: 1.0
species: 299938

299938
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_Diacyl_sn_glycerol_didodecanoyl_n_C120_C27H52O5

301999
type: Reaction
name: Proline-tRNA_ligase
fast: false
product: 757107
reactant: 757046
kinetic law: 757120
reversible: false
product: 757095
reactant: 757059
product: 757083
notes: Abbreviation: R_PROTRS EC Number: 6.1.1.15 SUBSYSTEM: AminoAcids_ArgProMetabolism Equation: M_atp[c] + M_pro_L[c] + M_trnapro[c] --> M_amp[c] + M_ppi[c] + M_protrna[c] genes: LOCUS:PFI1240c# LOCUS:PFL0670c# proteins: GENE ASSOCIATION: (PFI1240c) or (PFL0670c)
reactant: 757071

757107
type: SpeciesReference
stoichiometry: 1.0
species: 301440

301440
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Prolyl_tRNA_Pro_C5H8NOR

757046
type: SpeciesReference
stoichiometry: 1.0
species: 300414

304832
type: LocalParameter
units: 756622
value: 0.0

304829
type: LocalParameter
value: 0.0

304826
type: LocalParameter
units: 756574
value: 999999.0

304825
type: LocalParameter
units: 756574
value: 0.0

757095
type: SpeciesReference
stoichiometry: 1.0
species: 301416

757059
type: SpeciesReference
stoichiometry: 1.0
species: 301434

757083
type: SpeciesReference
stoichiometry: 1.0
species: 300370

757071
type: SpeciesReference
stoichiometry: 1.0
species: 301673

301673
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Pro_R

300865
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

301743
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Valine_C5H11NO2

300124
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

302876
type: Reaction
kinetic law: 779152
reversible: false
product: 779128
product: 779140
reactant: 779103
notes: Abbreviation: R_AGPAT180_ap EC Number: 2.3.1.51 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1odecg3p[ap] + M_ocdcaACP[ap] --> M_ACP[ap] + M_pa180[ap] genes: LOCUS:PF14_0421# proteins: GENE ASSOCIATION: (PF14_0421)
reactant: 779116
fast: false
name: 1-acylglycerol-3-phosphate_O-acyltransferase

307165
type: LocalParameter
units: 756622
value: 0.0

307163
type: LocalParameter
value: 0.0

307162
type: LocalParameter
units: 756574
value: 999999.0

307161
type: LocalParameter
units: 756574
value: 0.0

779128
type: SpeciesReference
stoichiometry: 1.0
species: 300270

779140
type: SpeciesReference
stoichiometry: 1.0
species: 301282

301282
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_2_dioctadecanoyl_sn_glycerol_3_phosphate_C39H75O8P1

779103
type: SpeciesReference
stoichiometry: 1.0
species: 300014

779116
type: SpeciesReference
stoichiometry: 1.0
species: 301210

300612
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dGTP_C10H12N5O13P3

303545
type: Reaction
product: 795057
fast: false
kinetic law: 795081
product: 795069
reactant: 795045
name: phosphatidylglycerophosphatase
notes: Abbreviation: R_PGPP181pp EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp181[c] --> M_pg181[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
reversible: false
reactant: 795033

795057
type: SpeciesReference
stoichiometry: 1.0
species: 301358

308368
type: LocalParameter
units: 756622
value: 0.0

308367
type: LocalParameter
value: 0.0

308365
type: LocalParameter
units: 756574
value: 999999.0

308364
type: LocalParameter
units: 756574
value: 0.0

795069
type: SpeciesReference
stoichiometry: 1.0
species: 301390

795045
type: SpeciesReference
stoichiometry: 1.0
species: 301372

795033
type: SpeciesReference
stoichiometry: 1.0
species: 300903

303878
type: Reaction
kinetic law: 802225
fast: false
reactant: 802189
name: nucleoside-diphosphate_kinase
product: 802201
product: 802213
notes: Abbreviation: R_NDPK4 EC Number: 2.7.4.6 SUBSYSTEM: Nucleotides_PyrimidineMetabolism ; Nucleotides_PurineMetabolism ; Lipids_DolicholMetabolism Equation: M_atp[c] + M_dtdp[c] <==> M_adp[c] + M_dttp[c] genes: LOCUS:PF13_0349# LOCUS:PFF0275c# proteins: GENE ASSOCIATION: (PF13_0349) or (PFF0275c)
reactant: 802177
reversible: true

309011
type: LocalParameter
units: 756622
value: 0.0

309010
type: LocalParameter
value: 0.0

309008
type: LocalParameter
units: 756574
value: 999999.0

309007
type: LocalParameter
units: 756574
value: -999999.0

802189
type: SpeciesReference
stoichiometry: 1.0
species: 300674

300674
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dTDP_C10H13N2O11P2

802201
type: SpeciesReference
stoichiometry: 1.0
species: 300332

802213
type: SpeciesReference
stoichiometry: 1.0
species: 300678

300678
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dTTP_C10H13N2O14P3

802177
type: SpeciesReference
stoichiometry: 1.0
species: 300414

304592
type: Reaction
kinetic law: 814707
product: 814695
reactant: 814683
notes: Abbreviation: R_AMETtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_amet[m] <==> M_amet[c] genes: LOCUS:PFL2000w# proteins: GENE ASSOCIATION: (PFL2000w)
fast: false
reversible: true
name: R_AMETtmt

310320
type: LocalParameter
units: 756622
value: 0.0

310319
type: LocalParameter
value: 0.0

310317
type: LocalParameter
units: 756574
value: 999999.0

310316
type: LocalParameter
units: 756574
value: -999999.0

814695
type: SpeciesReference
stoichiometry: 1.0
species: 300360

300360
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: S_Adenosyl_L_methionine_C15H23N6O5S

814683
type: SpeciesReference
stoichiometry: 1.0
species: 300364

300364
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: S_Adenosyl_L_methionine_C15H23N6O5S

302973
type: Reaction
reactant: 781972
product: 781996
kinetic law: 782020
reversible: false
reactant: 781984
name: glycerol-3-phosphate_O-acyltransferase
product: 782008
fast: false
notes: Abbreviation: R_G3PAT140_ap EC Number: 2.3.1.15 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_glyc3p[ap] + M[m] yrsACP[ap] --> M_1tdecg3p[ap] + M_ACP[ap] genes: LOCUS:PF13_0100# LOCUS:PFL0620c# proteins: GENE ASSOCIATION: (PF13_0100) or (PFL0620c)

781972
type: SpeciesReference
stoichiometry: 1.0
species: 300849

781996
type: SpeciesReference
stoichiometry: 1.0
species: 300024

300024
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_tetradecanoyl_sn_glycerol_3_phosphate_C17H33O7P1

307336
type: LocalParameter
units: 756622
value: 0.0

307334
type: LocalParameter
value: 0.0

307333
type: LocalParameter
units: 756574
value: 999999.0

307331
type: LocalParameter
units: 756574
value: 0.0

781984
type: SpeciesReference
stoichiometry: 1.0
species: 301122

301122
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Myristoyl_ACP_n_C140ACP_C25H47N2O8PRS

782008
type: SpeciesReference
stoichiometry: 1.0
species: 300270

301066
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Malate_C4H4O5

303659
type: Reaction
reactant: 797588
product: 797625
kinetic law: 797637
notes: Abbreviation: R_PAPA140 EC Number: 3.1.3.4 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa140[c] --> M_12dgr140[c] + M_pi[c] genes: LOCUS:PFC0995c# proteins: GENE ASSOCIATION: (PFC0995c)
product: 797612
reactant: 797600
name: phosphatidate_phosphatase
fast: false
reversible: false

797588
type: SpeciesReference
stoichiometry: 1.0
species: 300903

797625
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308610
type: LocalParameter
units: 756622
value: 0.0

308608
type: LocalParameter
value: 0.0

308607
type: LocalParameter
units: 756574
value: 999999.0

308605
type: LocalParameter
units: 756574
value: 0.0

797612
type: SpeciesReference
stoichiometry: 1.0
species: 299942

797600
type: SpeciesReference
stoichiometry: 1.0
species: 301268

301952
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Sulfate_O4S

302139
type: Reaction
product: 762456
reactant: 762432
notes: Abbreviation: R_GLYK EC Number: 2.7.1.30 SUBSYSTEM: Carbohydrates_Glycolysis Equation: M_atp[c] + M_glyc[c] --> M_adp[c] + M_glyc3p[c] + M_h[c] genes: LOCUS:PF13_0269# proteins: GENE ASSOCIATION: (PF13_0269)
fast: false
kinetic law: 762492
reactant: 762444
name: glycerol_kinase
reversible: false
product: 762480
product: 762468

762456
type: SpeciesReference
stoichiometry: 1.0
species: 300332

762432
type: SpeciesReference
stoichiometry: 1.0
species: 300414

305432
type: LocalParameter
units: 756622
value: 0.0

305429
type: LocalParameter
value: 0.0

305426
type: LocalParameter
units: 756574
value: 999999.0

305423
type: LocalParameter
units: 756574
value: 0.0

762444
type: SpeciesReference
stoichiometry: 1.0
species: 300855

762480
type: SpeciesReference
stoichiometry: 1.0
species: 300911

762468
type: SpeciesReference
stoichiometry: 1.0
species: 300851

300961
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: all_trans_Hexaprenyl_diphosphate_C30H49O7P2

300893
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_hydroxy_2_methyl_2_E_butenyl_4_diphosphate_C5H9O8P2

302083
type: Reaction
reactant: 760429
product: 760453
kinetic law: 760489
name: spermidine_synthase
fast: false
reactant: 760441
product: 760477
reversible: false
notes: Abbreviation: R_SPMS EC Number: 2.5.1.16 SUBSYSTEM: AminoAcids_MetPolyamineMetabolism Equation: M_ametam[c] + M_ptrc[c] --> M_5mta[c] + M_h[c] + M_spmd[c] genes: LOCUS:PF11_0301# proteins: GENE ASSOCIATION: (PF11_0301)
product: 760465

760429
type: SpeciesReference
stoichiometry: 1.0
species: 300366

760453
type: SpeciesReference
stoichiometry: 1.0
species: 300250

300250
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_Methylthioadenosine_C11H15N5O3S

305174
type: LocalParameter
units: 756622
value: 0.0

305171
type: LocalParameter
value: 0.0

305168
type: LocalParameter
units: 756574
value: 999999.0

305167
type: LocalParameter
units: 756574
value: 0.0

760441
type: SpeciesReference
stoichiometry: 1.0
species: 301473

760477
type: SpeciesReference
stoichiometry: 1.0
species: 301553

301553
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Spermidine_C7H22N3

760465
type: SpeciesReference
stoichiometry: 1.0
species: 300911

304526
type: Reaction
fast: false
product: 813580
reversible: true
reactant: 813543
reactant: 813556
product: 813568
kinetic law: 813592
name: R_PNTOt2
notes: Abbreviation: R_PNTOt2 EC Number: SUBSYSTEM: Transport_cofactor Equation: M_h[e] + M_pnto_R[e] <==> M_h[c] + M_pnto_R[c] genes: LOCUS:PF11_0059# proteins: GENE ASSOCIATION: (PF11_0059)

813580
type: SpeciesReference
stoichiometry: 1.0
species: 301402

301402
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: _R_Pantothenate_C9H16NO5

813543
type: SpeciesReference
stoichiometry: 1.0
species: 300913

813556
type: SpeciesReference
stoichiometry: 1.0
species: 301404

301404
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: _R_Pantothenate_C9H16NO5

813568
type: SpeciesReference
stoichiometry: 1.0
species: 300911

310199
type: LocalParameter
units: 756622
value: 0.0

310198
type: LocalParameter
value: 0.0

310196
type: LocalParameter
units: 756574
value: 999999.0

310195
type: LocalParameter
units: 756574
value: -999999.0

302629
type: Reaction
kinetic law: 773760
product: 773748
reactant: 773736
notes: Abbreviation: R_EX_o2s_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_o2s <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_o2s_e_

306734
type: LocalParameter
units: 756622
value: 0.0

306733
type: LocalParameter
value: 0.0

306732
type: LocalParameter
units: 756574
value: 999999.0

306730
type: LocalParameter
units: 756574
value: -999999.0

773748
type: SpeciesReference
stoichiometry: 1.0
species: 301920

301920
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Superoxide_anion_O2

773736
type: SpeciesReference
stoichiometry: 1.0
species: 301194

301194
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Superoxide_anion_O2

300787
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

303362
type: Reaction
product: 790802
reactant: 790766
reactant: 790778
fast: false
product: 790814
notes: Abbreviation: R_LPLIPAL2E161 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpe161[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_hdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 790790
name: lysophospholipase
kinetic law: 790826
reversible: false

790802
type: SpeciesReference
stoichiometry: 1.0
species: 300911

790766
type: SpeciesReference
stoichiometry: 1.0
species: 300038

300038
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoethanolamine_n_C161_C21H42NO7P1

790778
type: SpeciesReference
stoichiometry: 1.0
species: 300903

790814
type: SpeciesReference
stoichiometry: 1.0
species: 300939

790790
type: SpeciesReference
stoichiometry: 1.0
species: 300775

308033
type: LocalParameter
units: 756622
value: 0.0

308031
type: LocalParameter
value: 0.0

308030
type: LocalParameter
units: 756574
value: 999999.0

308028
type: LocalParameter
units: 756574
value: 0.0

303065
type: Reaction
product: 783740
notes: Abbreviation: R_GPIAT EC Number: SUBSYSTEM: Lipids_GPIAnchorBiosynthesis Equation: M_gpail[c] + M_pmtcoa[c] --> M[c] oa[c] + M_gacpail[c] genes: LOCUS:PFF0740c# proteins: GENE ASSOCIATION: (PFF0740c)
kinetic law: 783764
name: R_GPIAT
product: 783752
reactant: 783716
fast: false
reversible: false
reactant: 783728

783740
type: SpeciesReference
stoichiometry: 1.0
species: 300522

307492
type: LocalParameter
units: 756622
value: 0.0

307491
type: LocalParameter
value: 0.0

307489
type: LocalParameter
units: 756574
value: 999999.0

307488
type: LocalParameter
units: 756574
value: 0.0

783752
type: SpeciesReference
stoichiometry: 1.0
species: 300787

783716
type: SpeciesReference
stoichiometry: 1.0
species: 300865

783728
type: SpeciesReference
stoichiometry: 1.0
species: 301398

302314
type: Reaction
reactant: 768256
reactant: 768243
name: protoporphyrinogen_oxidase
product: 768268
fast: false
product: 768280
kinetic law: 768292
reversible: false
notes: Abbreviation: R_PPPGO3 EC Number: 1.3.3.4 SUBSYSTEM: Cofactors_PorphyrinMetabolism Equation: (3.0) M_fum[c] + M_pppg9[c] --> M_ppp9[c] + (3.0) M_succ[c] genes: LOCUS:PF10_0275# proteins: GENE ASSOCIATION: (PF10_0275)

768256
type: SpeciesReference
stoichiometry: 1.0
species: 301428

301428
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Protoporphyrinogen_IX_C34H38N4O4

768243
type: SpeciesReference
stoichiometry: 3.0
species: 300757

300757
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Fumarate_C4H2O4

768268
type: SpeciesReference
stoichiometry: 1.0
species: 301422

301422
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Protoporphyrin_C34H32N4O4

768280
type: SpeciesReference
stoichiometry: 3.0
species: 301563

301563
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Succinate_C4H4O4

306144
type: LocalParameter
units: 756622
value: 0.0

306143
type: LocalParameter
value: 0.0

306142
type: LocalParameter
units: 756574
value: 999999.0

306140
type: LocalParameter
units: 756574
value: 0.0

302017
type: Reaction
kinetic law: 757897
reactant: 757821
product: 757871
name: Carbamoyl-phosphate_synthase_(ammonia)
product: 757859
product: 757884
reactant: 757809
reactant: 757834
fast: false
notes: Abbreviation: R_CBPSam EC Number: 6.3.4.16 SUBSYSTEM: AminoAcids_GluMetabolism ; AminoAcids_NitrogenMetabolism Equation: (2.0) M_atp[c] + M_hco3[c] + M_nh4[c] --> (2.0) M_adp[c] + M[c] bp[c] + (2.0) M_h[c] + M_pi[c] genes: LOCUS:PF13_0044# proteins: GENE ASSOCIATION: (PF13_0044)
product: 757847
reversible: false

304904
type: LocalParameter
units: 756622
value: 0.0

304901
type: LocalParameter
value: 0.0

304898
type: LocalParameter
units: 756574
value: 999999.0

304897
type: LocalParameter
units: 756574
value: 0.0

757821
type: SpeciesReference
stoichiometry: 1.0
species: 300923

757871
type: SpeciesReference
stoichiometry: 2.0
species: 300911

757859
type: SpeciesReference
stoichiometry: 1.0
species: 300430

300430
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Carbamoyl_phosphate_CH2NO5P

757884
type: SpeciesReference
stoichiometry: 1.0
species: 301390

757809
type: SpeciesReference
stoichiometry: 2.0
species: 300414

757834
type: SpeciesReference
stoichiometry: 1.0
species: 301160

757847
type: SpeciesReference
stoichiometry: 2.0
species: 300332

302617
type: Reaction
kinetic law: 773612
product: 773599
reactant: 773587
notes: Abbreviation: R_EX_no_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_no <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_no_e_

306713
type: LocalParameter
units: 756622
value: 0.0

306711
type: LocalParameter
value: 0.0

306710
type: LocalParameter
units: 756574
value: 999999.0

306708
type: LocalParameter
units: 756574
value: -999999.0

773599
type: SpeciesReference
stoichiometry: 1.0
species: 301912

301912
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nitric_oxide_NO

773587
type: SpeciesReference
stoichiometry: 1.0
species: 301182

301012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Inosine_C10H12N4O5

300885
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: GTP_C10H12N5O14P3

302506
type: Reaction
kinetic law: 772187
product: 772175
reactant: 772163
notes: Abbreviation: R_EX_for_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_for <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_for_e_

306514
type: LocalParameter
units: 756622
value: 0.0

306513
type: LocalParameter
value: 0.0

306512
type: LocalParameter
units: 756574
value: 999999.0

306510
type: LocalParameter
units: 756574
value: -999999.0

772175
type: SpeciesReference
stoichiometry: 1.0
species: 301834

301834
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Formate_CH1O2

772163
type: SpeciesReference
stoichiometry: 1.0
species: 300749

300749
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Formate_CH1O2

304487
type: Reaction
kinetic law: 813096
product: 813084
reactant: 813071
notes: Abbreviation: R_DTTPt EC Number: SUBSYSTEM: Transport_base Equation: M_dttp[e] <==> M_dttp[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
fast: false
reversible: true
name: R_DTTPt

310128
type: LocalParameter
units: 756622
value: 0.0

310126
type: LocalParameter
value: 0.0

310125
type: LocalParameter
units: 756574
value: 999999.0

310123
type: LocalParameter
units: 756574
value: -999999.0

813084
type: SpeciesReference
stoichiometry: 1.0
species: 300678

813071
type: SpeciesReference
stoichiometry: 1.0
species: 300680

300680
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: dTTP_C10H13N2O14P3

302391
type: Reaction
kinetic law: 770373
product: 770361
reactant: 770349
reactant: 770337
notes: Abbreviation: R_OPHHX_mt EC Number: SUBSYSTEM: Cofactors_UbiquinoneMetabolism Equation: M_2oph[m] + (0.5) M_o2[m] --> M_2ohph[m] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: false
name: R_OPHHX_mt

306304
type: LocalParameter
units: 756622
value: 0.0

306303
type: LocalParameter
value: 0.0

306302
type: LocalParameter
units: 756574
value: 999999.0

306300
type: LocalParameter
units: 756574
value: 0.0

770361
type: SpeciesReference
stoichiometry: 1.0
species: 300084

300084
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Octaprenyl_6_hydroxyphenol_C46H70O2

770349
type: SpeciesReference
stoichiometry: 0.5
species: 301190

770337
type: SpeciesReference
stoichiometry: 1.0
species: 300094

300094
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Octaprenylphenol_C46H70O

304208
type: Reaction
reactant: 808688
notes: Abbreviation: R_SPMDt2 EC Number: SUBSYSTEM: Transport Equation: M_h[e] + M_spmd[e] --> M_h[c] + M_spmd[c] genes: proteins: GENE ASSOCIATION:
name: R_SPMDt2
product: 808700
fast: false
reactant: 808676
product: 808712
kinetic law: 808724
reversible: false

808688
type: SpeciesReference
stoichiometry: 1.0
species: 301555

301555
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Spermidine_C7H22N3

808700
type: SpeciesReference
stoichiometry: 1.0
species: 300911

808676
type: SpeciesReference
stoichiometry: 1.0
species: 300913

808712
type: SpeciesReference
stoichiometry: 1.0
species: 301553

309616
type: LocalParameter
units: 756622
value: 0.0

309615
type: LocalParameter
value: 0.0

309613
type: LocalParameter
units: 756574
value: 999999.0

309612
type: LocalParameter
units: 756574
value: 0.0

303419
type: Reaction
reversible: false
product: 792181
product: 792169
name: phospholipase_A2
notes: Abbreviation: R_PLIPA2E140pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pe140[c] --> M_1agpe140[c] + M_h[c] + M_ttdca[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
product: 792193
fast: false
reactant: 792145
kinetic law: 792205
reactant: 792157

792181
type: SpeciesReference
stoichiometry: 1.0
species: 300911

792169
type: SpeciesReference
stoichiometry: 1.0
species: 299972

792193
type: SpeciesReference
stoichiometry: 1.0
species: 301697

792145
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308137
type: LocalParameter
units: 756622
value: 0.0

308136
type: LocalParameter
value: 0.0

308134
type: LocalParameter
units: 756574
value: 999999.0

308133
type: LocalParameter
units: 756574
value: 0.0

792157
type: SpeciesReference
stoichiometry: 1.0
species: 301310

301310
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: phosphatidylethanolamine_ditetradecanoyl_n_C140_C33H66N1O8P1

300632
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dIMP_C10H11N4O7P

301192
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Superoxide_anion_O2

303680
type: Reaction
product: 798049
reversible: false
reactant: 798013
notes: Abbreviation: R_PAPA161pp EC Number: 3.1.3.4 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa161[c] --> M_12dgr161[c] + M_pi[c] genes: LOCUS:PFC0995c# proteins: GENE ASSOCIATION: (PFC0995c)
fast: false
reactant: 798025
kinetic law: 798061
product: 798037
name: phosphatidate_phosphatase

798049
type: SpeciesReference
stoichiometry: 1.0
species: 301390

798013
type: SpeciesReference
stoichiometry: 1.0
species: 300903

798025
type: SpeciesReference
stoichiometry: 1.0
species: 301280

301280
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate_C35H63O8P1

308648
type: LocalParameter
units: 756622
value: 0.0

308647
type: LocalParameter
value: 0.0

308645
type: LocalParameter
units: 756574
value: 999999.0

308644
type: LocalParameter
units: 756574
value: 0.0

798037
type: SpeciesReference
stoichiometry: 1.0
species: 299954

301110
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D-myo-Inositol 4-phosphate_C6H11O9P

302811
type: Reaction
fast: false
notes: Abbreviation: R_3OAR180_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ooctdACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hoctaACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777433
product: 777445
reactant: 777421
product: 777457
reactant: 777409
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
reversible: true
kinetic law: 777469

777433
type: SpeciesReference
stoichiometry: 1.0
species: 301146

777445
type: SpeciesReference
stoichiometry: 1.0
species: 300144

300144
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777421
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777457
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777409
type: SpeciesReference
stoichiometry: 1.0
species: 300184

300184
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

307053
type: LocalParameter
units: 756622
value: 0.0

307051
type: LocalParameter
value: 0.0

307050
type: LocalParameter
units: 756574
value: 999999.0

307049
type: LocalParameter
units: 756574
value: -999999.0

300809
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: GDP_D_mannose_C16H23N5O16P2

300432
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

304286
type: Reaction
name: R_PHEt2r
product: 810232
notes: Abbreviation: R_PHEt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_h[e] + M_phe_L[e] <==> M_h[c] + M_phe_L[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
product: 810220
fast: false
reactant: 810208
reversible: true
reactant: 810196
kinetic law: 810244

810232
type: SpeciesReference
stoichiometry: 1.0
species: 301374

810220
type: SpeciesReference
stoichiometry: 1.0
species: 300911

810208
type: SpeciesReference
stoichiometry: 1.0
species: 301376

301376
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Phenylalanine_C9H11NO2

810196
type: SpeciesReference
stoichiometry: 1.0
species: 300913

309759
type: LocalParameter
units: 756622
value: 0.0

309758
type: LocalParameter
value: 0.0

309756
type: LocalParameter
units: 756574
value: 999999.0

309755
type: LocalParameter
units: 756574
value: -999999.0

300222
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Hydroxybenzoate_C7H5O3

304661
type: Reaction
fast: false
product: 815662
product: 815674
notes: Abbreviation: R_GLUASPtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_asp_L[m] + M_glu_L[c] --> M_asp_L[c] + M_glu_L[m] genes: proteins: GENE ASSOCIATION:
reactant: 815650
name: R_GLUASPtmt
kinetic law: 815686
reactant: 815637
reversible: false

815662
type: SpeciesReference
stoichiometry: 1.0
species: 300404

815674
type: SpeciesReference
stoichiometry: 1.0
species: 300833

300833
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: L_Glutamate_C5H8NO4

815650
type: SpeciesReference
stoichiometry: 1.0
species: 300829

310447
type: LocalParameter
units: 756622
value: 0.0

310445
type: LocalParameter
value: 0.0

310444
type: LocalParameter
units: 756574
value: 999999.0

310442
type: LocalParameter
units: 756574
value: 0.0

815637
type: SpeciesReference
stoichiometry: 1.0
species: 300408

300408
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: L_Aspartate_C4H6NO4

303917
type: Reaction
kinetic law: 803117
reactant: 803069
product: 803105
name: R_ATPM
product: 803081
reversible: false
notes: Abbreviation: R_ATPM EC Number: SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_atp[c] + M_h2o[c] --> M_adp[c] + M_h[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
fast: false
reactant: 803057
product: 803093

309083
type: LocalParameter
units: 756622
value: 0.0

309081
type: LocalParameter
value: 0.0

309080
type: LocalParameter
units: 756574
value: 999999.0

309078
type: LocalParameter
units: 756574
value: 0.0

803069
type: SpeciesReference
stoichiometry: 1.0
species: 300903

803105
type: SpeciesReference
stoichiometry: 1.0
species: 301390

803081
type: SpeciesReference
stoichiometry: 1.0
species: 300332

803057
type: SpeciesReference
stoichiometry: 1.0
species: 300414

803093
type: SpeciesReference
stoichiometry: 1.0
species: 300911

300200
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Aminobutanoate_C4H9NO2

301888
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Inosine_C10H12N4O5

303746
type: Reaction
reversible: false
reactant: 799413
fast: false
product: 799449
kinetic law: 799461
reactant: 799401
product: 799425
notes: Abbreviation: R_NDP4 EC Number: 3.6.1.6 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_dgdp[c] + M_h2o[c] --> M_dgmp[c] + M_h[c] + M_pi[c] genes: LOCUS:MAL13P1_248# LOCUS:PF14_0297# proteins: GENE ASSOCIATION: (MAL13P1_248) or (PF14_0297)
name: nucleoside-diphosphatase
product: 799437

799413
type: SpeciesReference
stoichiometry: 1.0
species: 300903

799449
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308769
type: LocalParameter
units: 756622
value: 0.0

308768
type: LocalParameter
value: 0.0

308766
type: LocalParameter
units: 756574
value: 999999.0

308765
type: LocalParameter
units: 756574
value: 0.0

799401
type: SpeciesReference
stoichiometry: 1.0
species: 300604

300604
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dGDP_C10H12N5O10P2

799425
type: SpeciesReference
stoichiometry: 1.0
species: 300606

799437
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302888
type: Reaction
kinetic law: 779428
reversible: false
fast: false
reactant: 779380
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
notes: Abbreviation: R_EAR121x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_t3c5ddeceACP[ap] --> M[c] ddec5eACP[ap] + M_nad[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
reactant: 779392
reactant: 779368
product: 779404
product: 779416

307185
type: LocalParameter
units: 756622
value: 0.0

307183
type: LocalParameter
value: 0.0

307182
type: LocalParameter
units: 756574
value: 999999.0

307181
type: LocalParameter
units: 756574
value: 0.0

779380
type: SpeciesReference
stoichiometry: 1.0
species: 301134

779392
type: SpeciesReference
stoichiometry: 1.0
species: 301573

301573
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779368
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779404
type: SpeciesReference
stoichiometry: 1.0
species: 300432

779416
type: SpeciesReference
stoichiometry: 1.0
species: 301128

303389
type: Reaction
reversible: false
reactant: 791418
kinetic law: 791479
fast: false
product: 791443
name: lysophospholipase
product: 791467
notes: Abbreviation: R_LPLIPAL2G181 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpg181[c] + M_h2o[c] --> M_g3pg[c] + M_h[c] + M_ocdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 791455
reactant: 791431

791418
type: SpeciesReference
stoichiometry: 1.0
species: 300056

308082
type: LocalParameter
units: 756622
value: 0.0

308081
type: LocalParameter
value: 0.0

308079
type: LocalParameter
units: 756574
value: 999999.0

308078
type: LocalParameter
units: 756574
value: 0.0

791443
type: SpeciesReference
stoichiometry: 1.0
species: 300777

791467
type: SpeciesReference
stoichiometry: 1.0
species: 301220

791455
type: SpeciesReference
stoichiometry: 1.0
species: 300911

791431
type: SpeciesReference
stoichiometry: 1.0
species: 300903

303449
type: Reaction
reversible: false
name: phospholipase_A2
reactant: 792868
kinetic law: 792929
product: 792904
notes: Abbreviation: R_PLIPA2G161pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pg161[c] --> M_1agpg161[c] + M_h[c] + M_hdcea[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
product: 792917
reactant: 792880
fast: false
product: 792892

792868
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308192
type: LocalParameter
units: 756622
value: 0.0

308191
type: LocalParameter
value: 0.0

308189
type: LocalParameter
units: 756574
value: 999999.0

308188
type: LocalParameter
units: 756574
value: 0.0

792904
type: SpeciesReference
stoichiometry: 1.0
species: 300911

792917
type: SpeciesReference
stoichiometry: 1.0
species: 300939

792880
type: SpeciesReference
stoichiometry: 1.0
species: 301354

301354
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_dihexadec_9_enoyl_n_C161_C38H70O10P1

792892
type: SpeciesReference
stoichiometry: 1.0
species: 299992

304058
type: Reaction
reactant: 806310
product: 806322
reactant: 806298
kinetic law: 806347
product: 806335
fast: false
name: Protein_disulfide-isomerase
reversible: false
notes: Abbreviation: R_DSBCGT EC Number: 5.3.4.1 SUBSYSTEM: Redox_RedoxMetabolism Equation: M_dsbcox[c] + (2.0) M_gthrd[c] --> M_dsbcrd[c] + M_gthox[c] genes: LOCUS:MAL8P1_17# LOCUS:PF11_0352# LOCUS:PF13_0272# LOCUS:PF14_0694# LOCUS:PFI0950w# proteins: GENE ASSOCIATION: (MAL8P1_17) or (PF11_0352) or (PF13_0272) or (PF14_0694) or (PFI0950w)

806310
type: SpeciesReference
stoichiometry: 2.0
species: 300879

806322
type: SpeciesReference
stoichiometry: 1.0
species: 300668

300668
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: protein_disulfide_isomerase_II_reduced_XH2

806298
type: SpeciesReference
stoichiometry: 1.0
species: 300666

300666
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: protein_disulfide_isomerase_II_oxidized_X

309341
type: LocalParameter
units: 756622
value: 0.0

309340
type: LocalParameter
value: 0.0

309338
type: LocalParameter
units: 756574
value: 999999.0

309337
type: LocalParameter
units: 756574
value: 0.0

806335
type: SpeciesReference
stoichiometry: 1.0
species: 300873

300873
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Oxidized_glutathione_C20H30N6O12S2

304709
type: Reaction
kinetic law: 816266
product: 816253
reactant: 816241
notes: Abbreviation: R_PHEMEtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_pheme[m] <==> M_pheme[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PHEMEtmt

310535
type: LocalParameter
units: 756622
value: 0.0

310533
type: LocalParameter
value: 0.0

310532
type: LocalParameter
units: 756574
value: 999999.0

310530
type: LocalParameter
units: 756574
value: -999999.0

816253
type: SpeciesReference
stoichiometry: 1.0
species: 301380

301380
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Protoheme_C34H30FeN4O4

816241
type: SpeciesReference
stoichiometry: 1.0
species: 301382

301382
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Protoheme_C34H30FeN4O4

303134
type: Reaction
kinetic law: 785328
product: 785304
reactant: 785292
fast: false
notes: Abbreviation: R_CHLPCTD EC Number: 2.7.7.15 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism Equation: M[c] holp[c] + M[c] tp[c] + M_h[c] --> M[c] dpchol[c] + M_ppi[c] genes: LOCUS:MAL13P1_86# proteins: GENE ASSOCIATION: (MAL13P1_86)
reactant: 785279
name: choline-phosphate_cytidylyltransferase
reversible: false
product: 785316
reactant: 785267

307612
type: LocalParameter
units: 756622
value: 0.0

307611
type: LocalParameter
value: 0.0

307609
type: LocalParameter
units: 756574
value: 999999.0

307608
type: LocalParameter
units: 756574
value: 0.0

785304
type: SpeciesReference
stoichiometry: 1.0
species: 300438

785292
type: SpeciesReference
stoichiometry: 1.0
species: 300911

785279
type: SpeciesReference
stoichiometry: 1.0
species: 300536

785316
type: SpeciesReference
stoichiometry: 1.0
species: 301416

785267
type: SpeciesReference
stoichiometry: 1.0
species: 300478

302285
type: Reaction
product: 767294
kinetic law: 767306
fast: false
product: 767282
notes: Abbreviation: R_NNAM EC Number: 3.5.1.19 SUBSYSTEM: Cofactors_NicotinateNicotinamideMetabolism Equation: M_h2o[c] + M_ncam[c] --> M_nac[c] + M_nh4[c] genes: LOCUS:PFC0910w# proteins: GENE ASSOCIATION: (PFC0910w)
name: nicotinamidase
reactant: 767270
reversible: false
reactant: 767258

767294
type: SpeciesReference
stoichiometry: 1.0
species: 301160

306074
type: LocalParameter
units: 756622
value: 0.0

306073
type: LocalParameter
value: 0.0

306072
type: LocalParameter
units: 756574
value: 999999.0

306070
type: LocalParameter
units: 756574
value: 0.0

767282
type: SpeciesReference
stoichiometry: 1.0
species: 301124

767270
type: SpeciesReference
stoichiometry: 1.0
species: 301154

301154
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Nicotinamide_C6H6N2O

767258
type: SpeciesReference
stoichiometry: 1.0
species: 300903

301320
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_dihexadecanoyl_n_C160_C37H74N1O8P1

304046
type: Reaction
product: 806033
product: 806045
reactant: 806021
name: superoxide_dismutase
fast: false
reactant: 806009
kinetic law: 806057
reversible: false
notes: Abbreviation: R_SPODM_mt EC Number: 1.15.1.1 SUBSYSTEM: Redox_RedoxMetabolism ; Redox_MitochondrialAntioxidantSystem Equation: (2.0) M_h[m] + (2.0) M_o2s[m] --> M_h2o2[m] + M_o2[m] genes: LOCUS:PF08_0071# LOCUS:PFF1130c# proteins: GENE ASSOCIATION: (PF08_0071) or (PFF1130c)

806033
type: SpeciesReference
stoichiometry: 1.0
species: 300899

300899
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Hydrogen_peroxide_H2O2

806045
type: SpeciesReference
stoichiometry: 1.0
species: 301190

806021
type: SpeciesReference
stoichiometry: 2.0
species: 301196

301196
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Superoxide_anion_O2

806009
type: SpeciesReference
stoichiometry: 2.0
species: 300915

309319
type: LocalParameter
units: 756622
value: 0.0

309318
type: LocalParameter
value: 0.0

309316
type: LocalParameter
units: 756574
value: 999999.0

309315
type: LocalParameter
units: 756574
value: 0.0

302794
type: Reaction
reactant: 777000
kinetic law: 777036
reversible: true
reactant: 776988
product: 777024
reactant: 776976
product: 777012
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
notes: Abbreviation: R_3OAR120_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3oddecACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hddecACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
fast: false

777000
type: SpeciesReference
stoichiometry: 1.0
species: 301146

307023
type: LocalParameter
units: 756622
value: 0.0

307021
type: LocalParameter
value: 0.0

307020
type: LocalParameter
units: 756574
value: 999999.0

307019
type: LocalParameter
units: 756574
value: -999999.0

776988
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777024
type: SpeciesReference
stoichiometry: 1.0
species: 301140

776976
type: SpeciesReference
stoichiometry: 1.0
species: 300168

777012
type: SpeciesReference
stoichiometry: 1.0
species: 300132

300132
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

302497
type: Reaction
kinetic law: 772078
product: 772065
reactant: 772053
notes: Abbreviation: R_EX_folate1 EC Number: SUBSYSTEM: Exchange Equation: [e] : M_6hmhpt <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_folate1

306499
type: LocalParameter
units: 756622
value: 0.0

306498
type: LocalParameter
value: 0.0

306497
type: LocalParameter
units: 756574
value: 999999.0

306495
type: LocalParameter
units: 756574
value: -999999.0

772065
type: SpeciesReference
stoichiometry: 1.0
species: 301828

301828
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 6_hydroxymethyl_dihydropterin_C7H9N5O2

772053
type: SpeciesReference
stoichiometry: 1.0
species: 300260

301497
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Pyruvate_C3H3O3

301783
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 2_Oxoglutarate_C5H4O5

300164
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Oxodecanoyl_CoA_C31H48N7O18P3S

300052
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoglycerol_n_C161_C22H42O9P1

301026
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Lactate_C3H5O3

304355
type: Reaction
kinetic law: 811324
product: 811311
reactant: 811298
notes: Abbreviation: R_PHEMEtap EC Number: SUBSYSTEM: Transport_AP Equation: M_pheme[ap] <==> M_pheme[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PHEMEtap

309886
type: LocalParameter
units: 756622
value: 0.0

309884
type: LocalParameter
value: 0.0

309883
type: LocalParameter
units: 756574
value: 999999.0

309881
type: LocalParameter
units: 756574
value: -999999.0

811311
type: SpeciesReference
stoichiometry: 1.0
species: 301380

811298
type: SpeciesReference
stoichiometry: 1.0
species: 301378

301378
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Protoheme_C34H30FeN4O4

300450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

301394
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Phosphate_HO4P

300799
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: lycocholate_C26H43NO6

304688
type: Reaction
kinetic law: 816011
product: 815999
reactant: 815987
notes: Abbreviation: R_NH4tmt EC Number: SUBSYSTEM: Transport_MT Equation: M_nh4[m] <==> M_nh4[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_NH4tmt

310496
type: LocalParameter
units: 756622
value: 0.0

310495
type: LocalParameter
value: 0.0

310493
type: LocalParameter
units: 756574
value: 999999.0

310492
type: LocalParameter
units: 756574
value: -999999.0

815999
type: SpeciesReference
stoichiometry: 1.0
species: 301160

815987
type: SpeciesReference
stoichiometry: 1.0
species: 301164

301164
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Ammonium_H4N

301312
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_ditetradecanoyl_n_C140_C33H66N1O8P1

302671
type: Reaction
kinetic law: 774269
product: 774256
reactant: 774244
notes: Abbreviation: R_EX_sbt_D_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_sbt_D <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_sbt_D_e_

306807
type: LocalParameter
units: 756622
value: 0.0

306805
type: LocalParameter
value: 0.0

306804
type: LocalParameter
units: 756574
value: 999999.0

306803
type: LocalParameter
units: 756574
value: -999999.0

774256
type: SpeciesReference
stoichiometry: 1.0
species: 301948

301948
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Sorbitol_C6H14O6

774244
type: SpeciesReference
stoichiometry: 1.0
species: 301525

301525
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Sorbitol_C6H14O6

304730
type: Reaction
kinetic law: 816521
product: 816509
reactant: 816497
notes: Abbreviation: R_TYRLtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_tyr_L[m] <==> M_tyr_L[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_TYRLtmt

310573
type: LocalParameter
units: 756622
value: 0.0

310572
type: LocalParameter
value: 0.0

310570
type: LocalParameter
units: 756574
value: 999999.0

310569
type: LocalParameter
units: 756574
value: -999999.0

816509
type: SpeciesReference
stoichiometry: 1.0
species: 301707

816497
type: SpeciesReference
stoichiometry: 1.0
species: 301711

301711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: L_Tyrosine_C9H11NO3

304433
type: Reaction
kinetic law: 812295
product: 812283
reactant: 812271
notes: Abbreviation: R_FE2tap EC Number: SUBSYSTEM: Transport_AP Equation: M_fe2[ap] <==> M_fe2[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_FE2tap

310029
type: LocalParameter
units: 756622
value: 0.0

310027
type: LocalParameter
value: 0.0

310026
type: LocalParameter
units: 756574
value: 999999.0

310024
type: LocalParameter
units: 756574
value: -999999.0

812283
type: SpeciesReference
stoichiometry: 1.0
species: 300723

300723
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Fe2_Fe

812271
type: SpeciesReference
stoichiometry: 1.0
species: 300721

300721
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Fe2_Fe

300546
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Cytidine_C9H13N3O5

303584
type: Reaction
name: trans-hexaprenyltranstransferase
reactant: 795938
kinetic law: 795974
fast: false
notes: Abbreviation: R_HEXTT_mt EC Number: 2.5.1.30 SUBSYSTEM: Lipids_TerpenoidMetabolism Equation: M_hexdp[m] + M_ipdp[m] --> M_hepdp[m] + M_ppi[m] genes: LOCUS:PFB0130w# proteins: GENE ASSOCIATION: (PFB0130w)
reactant: 795926
product: 795962
product: 795950
reversible: false

795938
type: SpeciesReference
stoichiometry: 1.0
species: 301020

301020
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Isopentenyl_diphosphate_C5H9O7P2

308440
type: LocalParameter
units: 756622
value: 0.0

308438
type: LocalParameter
value: 0.0

308437
type: LocalParameter
units: 756574
value: 999999.0

308435
type: LocalParameter
units: 756574
value: 0.0

795926
type: SpeciesReference
stoichiometry: 1.0
species: 300961

795962
type: SpeciesReference
stoichiometry: 1.0
species: 301418

795950
type: SpeciesReference
stoichiometry: 1.0
species: 300951

300951
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: all_trans_Heptaprenyl_diphosphate_C35H57O7P2

302179
type: Reaction
reactant: 763686
reactant: 763699
fast: false
reversible: false
notes: Abbreviation: R_MAN1PT EC Number: 2.7.7.13 SUBSYSTEM: Carbohydrates_MannoseFructoseMetabolism Equation: M_gtp[c] + M_h[c] + M[m] an1p[c] --> M_gdpmann[c] + M_ppi[c] genes: LOCUS:PF14_0774# proteins: GENE ASSOCIATION: (PF14_0774)
reactant: 763674
kinetic law: 763735
product: 763723
product: 763711
name: mannose-1-phosphate_guanylyltransferase

763686
type: SpeciesReference
stoichiometry: 1.0
species: 300911

763699
type: SpeciesReference
stoichiometry: 1.0
species: 301076

763674
type: SpeciesReference
stoichiometry: 1.0
species: 300885

305632
type: LocalParameter
units: 756622
value: 0.0

305629
type: LocalParameter
value: 0.0

305626
type: LocalParameter
units: 756574
value: 999999.0

305623
type: LocalParameter
units: 756574
value: 0.0

763723
type: SpeciesReference
stoichiometry: 1.0
species: 301416

763711
type: SpeciesReference
stoichiometry: 1.0
species: 300809

302221
type: Reaction
kinetic law: 764979
product: 764967
reactant: 764955
reactant: 764943
notes: Abbreviation: R_LGTHL EC Number: 4.4.1.5 SUBSYSTEM: Carbohydrates_PyruvateMetabolism Equation: M_gthrd[c] + M[m] thgxl[c] --> M_lgt_S[c] genes: LOCUS:PF11_0145# LOCUS:PFF0230c# proteins: GENE ASSOCIATION: (PF11_0145) or (PFF0230c)
fast: false
reversible: false
name: lactoylglutathione_lyase

305869
type: LocalParameter
units: 756622
value: 0.0

305866
type: LocalParameter
value: 0.0

305863
type: LocalParameter
units: 756574
value: 999999.0

305860
type: LocalParameter
units: 756574
value: 0.0

764967
type: SpeciesReference
stoichiometry: 1.0
species: 301042

301042
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: _R_S_Lactoylglutathione_C13H20N3O8S

764955
type: SpeciesReference
stoichiometry: 1.0
species: 301118

301118
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Methylglyoxal_C3H4O2

764943
type: SpeciesReference
stoichiometry: 1.0
species: 300879

300116
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Dehydroquinate_C7H9O6

300986
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hypoxanthine_C5H4N4O

300402
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Asparaginyl_tRNA_Asn_C14H23N2O12PR2

301340
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: all_trans_Pentaprenyl_diphosphate_C25H41O7P2

302057
type: Reaction
name: branched-chain-amino-acid_transaminase
fast: false
reactant: 759489
product: 759525
reversible: true
reactant: 759501
kinetic law: 759537
notes: Abbreviation: R_VALTA EC Number: 2.6.1.42 SUBSYSTEM: AminoAcids_LeuIleValMetabolism Equation: M_akg[c] + M_val_L[c] <==> M_3mob[c] + M_glu_L[c] genes: LOCUS:PF14_0557# proteins: GENE ASSOCIATION: (PF14_0557)
product: 759513

759489
type: SpeciesReference
stoichiometry: 1.0
species: 300346

759525
type: SpeciesReference
stoichiometry: 1.0
species: 300829

759501
type: SpeciesReference
stoichiometry: 1.0
species: 301743

305066
type: LocalParameter
units: 756622
value: 0.0

305063
type: LocalParameter
value: 0.0

305060
type: LocalParameter
units: 756574
value: 999999.0

305057
type: LocalParameter
units: 756574
value: -999999.0

759513
type: SpeciesReference
stoichiometry: 1.0
species: 300148

302354
type: Reaction
reversible: false
reactant: 769344
reactant: 769332
product: 769369
kinetic law: 769381
notes: Abbreviation: R_PMPK EC Number: 2.7.4.7 SUBSYSTEM: Cofactors_ThiamineMetabolism Equation: M_4ampm[c] + M_atp[c] --> M_2mahmp[c] + M_adp[c] genes: LOCUS:PFE1030c# proteins: GENE ASSOCIATION: (PFE1030c)
fast: false
product: 769356
name: phosphomethylpyrimidine_kinase

769344
type: SpeciesReference
stoichiometry: 1.0
species: 300414

769332
type: SpeciesReference
stoichiometry: 1.0
species: 300214

769369
type: SpeciesReference
stoichiometry: 1.0
species: 300332

306229
type: LocalParameter
units: 756622
value: 0.0

306228
type: LocalParameter
value: 0.0

306227
type: LocalParameter
units: 756574
value: 999999.0

306225
type: LocalParameter
units: 756574
value: 0.0

769356
type: SpeciesReference
stoichiometry: 1.0
species: 300072

301852
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Glycine_C2H5NO2

304070
type: Reaction
reactant: 806516
reactant: 806528
reversible: true
kinetic law: 806564
notes: Abbreviation: R_ACt2r EC Number: SUBSYSTEM: Transport Equation: M_ac[e] + M_h[e] <==> M_ac[c] + M_h[c] genes: proteins: GENE ASSOCIATION:
product: 806540
name: R_ACt2r
fast: false
product: 806552

806516
type: SpeciesReference
stoichiometry: 1.0
species: 300294

300294
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Acetate_C2H3O2

806528
type: SpeciesReference
stoichiometry: 1.0
species: 300913

309363
type: LocalParameter
units: 756622
value: 0.0

309362
type: LocalParameter
value: 0.0

309360
type: LocalParameter
units: 756574
value: 999999.0

309359
type: LocalParameter
units: 756574
value: -999999.0

806540
type: SpeciesReference
stoichiometry: 1.0
species: 300292

806552
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302432
type: Reaction
kinetic law: 771244
product: 771232
reactant: 771220
notes: Abbreviation: R_EX_adn_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_adn <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_adn_e_

306384
type: LocalParameter
units: 756622
value: 0.0

306383
type: LocalParameter
value: 0.0

306382
type: LocalParameter
units: 756574
value: 999999.0

306380
type: LocalParameter
units: 756574
value: -999999.0

771232
type: SpeciesReference
stoichiometry: 1.0
species: 301781

771220
type: SpeciesReference
stoichiometry: 1.0
species: 300328

300328
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Adenosine_C10H13N5O4

304115
type: Reaction
kinetic law: 807310
product: 807298
reactant: 807285
notes: Abbreviation: R_GAMt1r EC Number: SUBSYSTEM: Transport Equation: M_gam[e] <==> M_gam[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_GAMt1r

309446
type: LocalParameter
units: 756622
value: 0.0

309444
type: LocalParameter
value: 0.0

309443
type: LocalParameter
units: 756574
value: 999999.0

309441
type: LocalParameter
units: 756574
value: -999999.0

807298
type: SpeciesReference
stoichiometry: 1.0
species: 300793

300793
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Glucosamine_C6H14NO5

807285
type: SpeciesReference
stoichiometry: 1.0
species: 300795

300795
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Glucosamine_C6H14NO5

303335
type: Reaction
product: 790163
product: 790151
notes: Abbreviation: R_LPLIPAL2A141 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2tdec7eg3p[c] + M_h2o[c] --> M_glyc3p[c] + (2.0) M_h[c] + M_ttdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 790127
product: 790139
fast: false
kinetic law: 790175
reactant: 790115
reversible: false
name: lysophospholipase

790163
type: SpeciesReference
stoichiometry: 1.0
species: 301703

790151
type: SpeciesReference
stoichiometry: 2.0
species: 300911

790127
type: SpeciesReference
stoichiometry: 1.0
species: 300903

790139
type: SpeciesReference
stoichiometry: 1.0
species: 300851

307983
type: LocalParameter
units: 756622
value: 0.0

307982
type: LocalParameter
value: 0.0

307980
type: LocalParameter
units: 756574
value: 999999.0

307979
type: LocalParameter
units: 756574
value: 0.0

790115
type: SpeciesReference
stoichiometry: 1.0
species: 300100

300100
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_tetradec_7_enoyl_sn_glycerol_3_phosphate_C17H32O7P1

303479
type: Reaction
fast: false
reversible: true
product: 793623
notes: Abbreviation: R_ETHAPT EC Number: 2.7.8.1 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: (0.01) M_dag[c] + M[c] dpea[c] <==> M[c] mp[c] + M_h[c] + (0.01) M_pe[c] genes: LOCUS:PFF1375c# proteins: GENE ASSOCIATION: (PFF1375c)
reactant: 793611
reactant: 793599
product: 793647
product: 793635
kinetic law: 793659
name: ethanolaminephosphotransferase

793623
type: SpeciesReference
stoichiometry: 1.0
species: 300510

793611
type: SpeciesReference
stoichiometry: 1.0
species: 300472

300472
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: CDPethanolamine_C11H19N4O11P2

793599
type: SpeciesReference
stoichiometry: 0.01
species: 300556

793647
type: SpeciesReference
stoichiometry: 0.01
species: 301334

301334
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

793635
type: SpeciesReference
stoichiometry: 1.0
species: 300911

308247
type: LocalParameter
units: 756622
value: 0.0

308246
type: LocalParameter
value: 0.0

308244
type: LocalParameter
units: 756574
value: 999999.0

308243
type: LocalParameter
units: 756574
value: -999999.0

302852
type: Reaction
reactant: 778546
product: 778582
reactant: 778558
fast: false
product: 778594
product: 778570
reactant: 778534
kinetic law: 778606
name: beta-ketoacyl-acyl-carrier-protein_synthase_I
reversible: false
notes: Abbreviation: R_3OAS60_ap EC Number: 2.3.1.41 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_butACP[ap] + M_h[ap] + M[m] alACP[ap] --> M_3ohexACP[ap] + M_ACP[ap] + M[c] o2[ap] genes: LOCUS:PFB0505c# LOCUS:PFF1275c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFF1275c)

778546
type: SpeciesReference
stoichiometry: 1.0
species: 300909

778582
type: SpeciesReference
stoichiometry: 1.0
species: 300270

778558
type: SpeciesReference
stoichiometry: 1.0
species: 301062

778594
type: SpeciesReference
stoichiometry: 1.0
species: 300512

778570
type: SpeciesReference
stoichiometry: 1.0
species: 300176

778534
type: SpeciesReference
stoichiometry: 1.0
species: 300422

300422
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Butyryl_ACP_n_C40ACP_C15H27N2O8PRS

307125
type: LocalParameter
units: 756622
value: 0.0

307123
type: LocalParameter
value: 0.0

307122
type: LocalParameter
units: 756574
value: 999999.0

307121
type: LocalParameter
units: 756574
value: 0.0

300672
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: periplasmic_disulfide_isomerasethiol_disulphide_oxidase_reduced_XH2

301605
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_6_7_8_Tetrahydrofolate_C19H21N7O6

302231
type: Reaction
name: aspartate_transaminase
notes: Abbreviation: R_ASPTA_mt EC Number: 2.6.1.1 SUBSYSTEM: AminoAcids_AsnAspMetabolism ; Carbohydrates_PyruvateMetabolism ; AminoAcids_GluMetabolism ; AminoAcids_PheTyrMetabolism Equation: M_akg[m] + M_asp_L[m] <==> M_glu_L[m] + M_oaa[m] genes: LOCUS:PFB0200c# proteins: GENE ASSOCIATION: (PFB0200c)
kinetic law: 765317
reactant: 765281
product: 765305
reactant: 765268
fast: false
product: 765293
reversible: true

305919
type: LocalParameter
units: 756622
value: 0.0

305916
type: LocalParameter
value: 0.0

305913
type: LocalParameter
units: 756574
value: 999999.0

305910
type: LocalParameter
units: 756574
value: -999999.0

765281
type: SpeciesReference
stoichiometry: 1.0
species: 300408

765305
type: SpeciesReference
stoichiometry: 1.0
species: 301200

765268
type: SpeciesReference
stoichiometry: 1.0
species: 300350

300350
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Oxoglutarate_C5H4O5

765293
type: SpeciesReference
stoichiometry: 1.0
species: 300833

301993
type: Reaction
name: R_G5SADr
kinetic law: 756902
notes: Abbreviation: R_G5SADr EC Number: SUBSYSTEM: AminoAcids_ArgProMetabolism Equation: M_glu5sa[c] <==> M_1pyr5c[c] + M_h[c] + M_h2o[c] genes: proteins: GENE ASSOCIATION:
reversible: true
product: 756878
product: 756890
product: 756866
fast: false
reactant: 756854

304808
type: LocalParameter
units: 756622
value: 0.0

304805
type: LocalParameter
value: 0.0

304802
type: LocalParameter
units: 756574
value: 999999.0

304801
type: LocalParameter
units: 756574
value: -999999.0

756878
type: SpeciesReference
stoichiometry: 1.0
species: 300911

756890
type: SpeciesReference
stoichiometry: 1.0
species: 300903

756866
type: SpeciesReference
stoichiometry: 1.0
species: 300018

300018
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Pyrroline_5_carboxylate_C5H6NO2

756854
type: SpeciesReference
stoichiometry: 1.0
species: 300825

303854
type: Reaction
kinetic law: 801646
notes: Abbreviation: R_PUNP5 EC Number: 2.4.2.1 SUBSYSTEM: Nucleotides_PurineMetabolism ; AminoAcids_MetPolyamineMetabolism Equation: M_ins[c] + M_pi[c] <==> M_hxan[c] + M_r1p[c] genes: LOCUS:PFE0660c# proteins: GENE ASSOCIATION: (PFE0660c)
product: 801634
fast: false
reactant: 801598
reactant: 801610
name: purine-nucleoside_phosphorylase
product: 801622
reversible: true

308967
type: LocalParameter
units: 756622
value: 0.0

308966
type: LocalParameter
value: 0.0

308964
type: LocalParameter
units: 756574
value: 999999.0

308963
type: LocalParameter
units: 756574
value: -999999.0

801634
type: SpeciesReference
stoichiometry: 1.0
species: 301509

301509
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha_D_Ribose_1_phosphate_C5H9O8P

801598
type: SpeciesReference
stoichiometry: 1.0
species: 301012

801610
type: SpeciesReference
stoichiometry: 1.0
species: 301390

801622
type: SpeciesReference
stoichiometry: 1.0
species: 300984

300917
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Hemoglobin_R

303968
type: Reaction
product: 804338
reactant: 804287
fast: false
name: glycine_hydroxymethyltransferase
reversible: true
notes: Abbreviation: R_GHMT2r EC Number: 2.1.2.1 SUBSYSTEM: Nucleotides_PyrimidineMetabolism ; AminoAcids_GlySerMetabolism ; Cofactors_FolateBiosynthesis Equation: M_ser_L[c] + M_thf[c] <==> M_gly[c] + M_h2o[c] + M[m] lthf[c] genes: LOCUS:PF14_0534# LOCUS:PFL1720w# proteins: GENE ASSOCIATION: (PF14_0534) or (PFL1720w)
product: 804325
product: 804313
reactant: 804300
kinetic law: 804350

804338
type: SpeciesReference
stoichiometry: 1.0
species: 301112

301112
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 5_10_Methylenetetrahydrofolate_C20H21N7O6

804287
type: SpeciesReference
stoichiometry: 1.0
species: 301533

804325
type: SpeciesReference
stoichiometry: 1.0
species: 300903

804313
type: SpeciesReference
stoichiometry: 1.0
species: 300841

804300
type: SpeciesReference
stoichiometry: 1.0
species: 301605

309176
type: LocalParameter
units: 756622
value: 0.0

309175
type: LocalParameter
value: 0.0

309173
type: LocalParameter
units: 756574
value: 999999.0

309172
type: LocalParameter
units: 756574
value: -999999.0

301699
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: tetradecanoate_n_C140_C14H27O2

300070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_hexadecanoyl_sn_glycerol_3_phosphate_C19H38O7P1

302115
type: Reaction
notes: Abbreviation: R_THRTRS EC Number: 6.1.1.3 SUBSYSTEM: AminoAcids_tRNA Equation: M_atp[c] + M_thr_L[c] + M_trnathr[c] --> M_amp[c] + M_ppi[c] + M_thrtrna[c] genes: LOCUS:PF11_0270# proteins: GENE ASSOCIATION: (PF11_0270)
reactant: 761696
product: 761720
reversible: false
reactant: 761672
fast: false
name: Threonine-tRNA_ligase
product: 761732
product: 761708
reactant: 761684
kinetic law: 761744

761696
type: SpeciesReference
stoichiometry: 1.0
species: 301679

301679
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Thr_R

761720
type: SpeciesReference
stoichiometry: 1.0
species: 301416

761672
type: SpeciesReference
stoichiometry: 1.0
species: 300414

761732
type: SpeciesReference
stoichiometry: 1.0
species: 301623

301623
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Threonyl_tRNA_Thr_C4H8NO2R

761708
type: SpeciesReference
stoichiometry: 1.0
species: 300370

761684
type: SpeciesReference
stoichiometry: 1.0
species: 301619

305312
type: LocalParameter
units: 756622
value: 0.0

305309
type: LocalParameter
value: 0.0

305306
type: LocalParameter
units: 756574
value: 999999.0

305303
type: LocalParameter
units: 756574
value: 0.0

304757
type: Reaction
kinetic law: 816907
product: 816895
reactant: 816883
notes: Abbreviation: R_EX_hb EC Number: SUBSYSTEM: Exchange Equation: [e] : --> M_hb genes: proteins: GENE ASSOCIATION:
fast: false
reversible: false
name: R_EX_hb

310623
type: LocalParameter
units: 756622
value: 0.0

310621
type: LocalParameter
value: 0.0

310620
type: LocalParameter
units: 756574
value: 999999.0

310618
type: LocalParameter
units: 756574
value: 0.0

816895
type: SpeciesReference
stoichiometry: 1.0
species: 300919

300919
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hemoglobin_R

816883
type: SpeciesReference
stoichiometry: 1.0
species: 301988

301988
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hemoglobin_R

302229
type: Reaction
product: 765232
reversible: true
fast: false
reactant: 765220
name: aspartate_transaminase
notes: Abbreviation: R_ASPTA EC Number: 2.6.1.1 SUBSYSTEM: AminoAcids_AsnAspMetabolism ; Carbohydrates_PyruvateMetabolism ; AminoAcids_GluMetabolism ; AminoAcids_PheTyrMetabolism Equation: M_akg[c] + M_asp_L[c] <==> M_glu_L[c] + M_oaa[c] genes: LOCUS:PFB0200c# proteins: GENE ASSOCIATION: (PFB0200c)
reactant: 765208
product: 765244
kinetic law: 765256

765232
type: SpeciesReference
stoichiometry: 1.0
species: 300829

765220
type: SpeciesReference
stoichiometry: 1.0
species: 300404

765208
type: SpeciesReference
stoichiometry: 1.0
species: 300346

765244
type: SpeciesReference
stoichiometry: 1.0
species: 301198

305909
type: LocalParameter
units: 756622
value: 0.0

305906
type: LocalParameter
value: 0.0

305903
type: LocalParameter
units: 756574
value: 999999.0

305900
type: LocalParameter
units: 756574
value: -999999.0

304502
type: Reaction
kinetic law: 813277
product: 813265
reactant: 813253
notes: Abbreviation: R_INSt EC Number: SUBSYSTEM: Transport_base Equation: M_ins[e] <==> M_ins[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
fast: false
reversible: true
name: R_INSt

310155
type: LocalParameter
units: 756622
value: 0.0

310154
type: LocalParameter
value: 0.0

310152
type: LocalParameter
units: 756574
value: 999999.0

310151
type: LocalParameter
units: 756574
value: -999999.0

813265
type: SpeciesReference
stoichiometry: 1.0
species: 301012

813253
type: SpeciesReference
stoichiometry: 1.0
species: 301014

301014
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Inosine_C10H12N4O5

303653
type: Reaction
kinetic law: 797514
reversible: false
notes: Abbreviation: R_PAPA120 EC Number: 3.1.3.4 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa120[c] --> M_12dgr120[c] + M_pi[c] genes: LOCUS:PFC0995c# proteins: GENE ASSOCIATION: (PFC0995c)
reactant: 797478
fast: false
name: phosphatidate_phosphatase
product: 797490
product: 797502
reactant: 797466

308599
type: LocalParameter
units: 756622
value: 0.0

308597
type: LocalParameter
value: 0.0

308596
type: LocalParameter
units: 756574
value: 999999.0

308594
type: LocalParameter
units: 756574
value: 0.0

797478
type: SpeciesReference
stoichiometry: 1.0
species: 301264

301264
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_didodecanoyl_sn_glycerol_3_phosphate_C27H51O8P1

797490
type: SpeciesReference
stoichiometry: 1.0
species: 299938

797502
type: SpeciesReference
stoichiometry: 1.0
species: 301390

797466
type: SpeciesReference
stoichiometry: 1.0
species: 300903

303296
type: Reaction
reactant: 789099
fast: false
product: 789135
product: 789147
name: lysophospholipase
kinetic law: 789159
notes: Abbreviation: R_LPLIPAL1E141pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpe141[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_ttdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 789111
product: 789123
reversible: false

789099
type: SpeciesReference
stoichiometry: 1.0
species: 299974

789135
type: SpeciesReference
stoichiometry: 1.0
species: 300911

789147
type: SpeciesReference
stoichiometry: 1.0
species: 301703

307906
type: LocalParameter
units: 756622
value: 0.0

307905
type: LocalParameter
value: 0.0

307903
type: LocalParameter
units: 756574
value: 999999.0

307902
type: LocalParameter
units: 756574
value: 0.0

789111
type: SpeciesReference
stoichiometry: 1.0
species: 300903

789123
type: SpeciesReference
stoichiometry: 1.0
species: 300775

301677
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Ser_R

300763
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Glucose_1_phosphate_C6H11O9P

304616
type: Reaction
kinetic law: 815084
product: 815072
reactant: 815060
notes: Abbreviation: R_4MPETZtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_4mpetz[m] <==> M_4mpetz[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_4MPETZtmt

310364
type: LocalParameter
units: 756622
value: 0.0

310363
type: LocalParameter
value: 0.0

310361
type: LocalParameter
units: 756574
value: 999999.0

310360
type: LocalParameter
units: 756574
value: -999999.0

815072
type: SpeciesReference
stoichiometry: 1.0
species: 300234

815060
type: SpeciesReference
stoichiometry: 1.0
species: 300236

304259
type: Reaction
product: 809691
reversible: true
kinetic law: 809703
reactant: 809667
fast: false
reactant: 809655
notes: Abbreviation: R_GLNt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_gln_L[e] + M_h[e] <==> M_gln_L[c] + M_h[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
name: R_GLNt2r
product: 809679

809691
type: SpeciesReference
stoichiometry: 1.0
species: 300911

309710
type: LocalParameter
units: 756622
value: 0.0

309708
type: LocalParameter
value: 0.0

309707
type: LocalParameter
units: 756574
value: 999999.0

309705
type: LocalParameter
units: 756574
value: -999999.0

809667
type: SpeciesReference
stoichiometry: 1.0
species: 300913

809655
type: SpeciesReference
stoichiometry: 1.0
species: 300821

809679
type: SpeciesReference
stoichiometry: 1.0
species: 300819

303173
type: Reaction
reactant: 786221
reactant: 786209
fast: false
kinetic law: 786270
notes: Abbreviation: R_DASYN160 EC Number: 2.7.7.41 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] tp[c] + M_h[c] + M_pa160[c] --> M[c] dpdhdecg[c] + M_ppi[c] genes: LOCUS:PF14_0097# proteins: GENE ASSOCIATION: (PF14_0097)
reactant: 786233
name: phosphatidate_cytidylyltransferase
reversible: false
product: 786246
product: 786258

786221
type: SpeciesReference
stoichiometry: 1.0
species: 300911

786209
type: SpeciesReference
stoichiometry: 1.0
species: 300536

307682
type: LocalParameter
units: 756622
value: 0.0

307681
type: LocalParameter
value: 0.0

307679
type: LocalParameter
units: 756574
value: 999999.0

307678
type: LocalParameter
units: 756574
value: 0.0

786233
type: SpeciesReference
stoichiometry: 1.0
species: 301276

301276
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_dihexadecanoyl_sn_glycerol_3_phosphate_C35H67O8P1

786246
type: SpeciesReference
stoichiometry: 1.0
species: 300452

300452
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

786258
type: SpeciesReference
stoichiometry: 1.0
species: 301416

303998
type: Reaction
reactant: 804931
notes: Abbreviation: R_SUCD3_u6m_mt EC Number: 1.3.5.1 SUBSYSTEM: Others_MitochondrialElectronFlow Equation: M_fadh2[m] + M_q8[m] <==> M_fad[m] + M_q8h2[m] genes: LOCUS:PF10_0334# proteins: GENE ASSOCIATION: (PF10_0334)
kinetic law: 804979
reversible: true
product: 804955
fast: false
product: 804967
name: succinate_dehydrogenase_(ubiquinone)
reactant: 804943

804931
type: SpeciesReference
stoichiometry: 1.0
species: 300717

300717
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933

309231
type: LocalParameter
units: 756622
value: 0.0

309230
type: LocalParameter
value: 0.0

309228
type: LocalParameter
units: 756574
value: 999999.0

309227
type: LocalParameter
units: 756574
value: -999999.0

804955
type: SpeciesReference
stoichiometry: 1.0
species: 300713

804967
type: SpeciesReference
stoichiometry: 1.0
species: 301505

804943
type: SpeciesReference
stoichiometry: 1.0
species: 301501

302125
type: Reaction
reversible: false
product: 762032
fast: false
name: UDP-N-acetylglucosamine_diphosphorylase
product: 762044
reactant: 762020
notes: Abbreviation: R_UAGDP EC Number: 2.7.7.23 SUBSYSTEM: Carbohydrates_AminosugarsMetabolism Equation: M_acgam1p[c] + M_h[c] + M_utp[c] --> M_ppi[c] + M_uacgam[c] genes: LOCUS:MAL13P1_218# proteins: GENE ASSOCIATION: (MAL13P1_218)
reactant: 762008
kinetic law: 762056
reactant: 761996

762032
type: SpeciesReference
stoichiometry: 1.0
species: 301416

762044
type: SpeciesReference
stoichiometry: 1.0
species: 301715

762020
type: SpeciesReference
stoichiometry: 1.0
species: 301741

301741
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: UTP_C9H11N2O15P3

762008
type: SpeciesReference
stoichiometry: 1.0
species: 300911

305362
type: LocalParameter
units: 756622
value: 0.0

305359
type: LocalParameter
value: 0.0

305356
type: LocalParameter
units: 756574
value: 999999.0

305353
type: LocalParameter
units: 756574
value: 0.0

761996
type: SpeciesReference
stoichiometry: 1.0
species: 300306

300306
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N_Acetyl_D_glucosamine_1_phosphate_C8H14NO9P

302259
type: Reaction
reversible: false
name: dihydrofolate_synthase
kinetic law: 766351
notes: Abbreviation: R_DHFS EC Number: 6.3.2.12 SUBSYSTEM: Cofactors_FolateBiosynthesis Equation: M_atp[c] + M_dhpt[c] + M_glu_L[c] --> M_adp[c] + M_dhf[c] + M_h[c] + M_pi[c] genes: LOCUS:PF13_0140# proteins: GENE ASSOCIATION: (PF13_0140)
reactant: 766267
reactant: 766291
reactant: 766279
product: 766339
product: 766315
fast: false
product: 766327
product: 766303

306004
type: LocalParameter
units: 756622
value: 0.0

306003
type: LocalParameter
value: 0.0

306002
type: LocalParameter
units: 756574
value: 999999.0

306000
type: LocalParameter
units: 756574
value: 0.0

766267
type: SpeciesReference
stoichiometry: 1.0
species: 300414

766291
type: SpeciesReference
stoichiometry: 1.0
species: 300829

766279
type: SpeciesReference
stoichiometry: 1.0
species: 300630

300630
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dihydropteroate_C14H13N6O3

766339
type: SpeciesReference
stoichiometry: 1.0
species: 301390

766315
type: SpeciesReference
stoichiometry: 1.0
species: 300622

766327
type: SpeciesReference
stoichiometry: 1.0
species: 300911

766303
type: SpeciesReference
stoichiometry: 1.0
species: 300332

300280
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Lipid

301627
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Thymidine_C10H14N2O5

304595
type: Reaction
reactant: 814732
reversible: false
fast: false
notes: Abbreviation: R_ATPADPex_mt EC Number: SUBSYSTEM: Transport_MT Equation: M_atp[m] + M_adp[c] --> M_atp[c] + M_adp[m] genes: LOCUS:PF10_0366# LOCUS:PF10_0051# proteins: GENE ASSOCIATION: (PF10_0366) or (PF10_0051)
reactant: 814719
name: R_ATPADPex_mt
kinetic law: 814768
product: 814744
product: 814756

814732
type: SpeciesReference
stoichiometry: 1.0
species: 300332

814719
type: SpeciesReference
stoichiometry: 1.0
species: 300416

300416
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: ATP_C10H12N5O13P3

310326
type: LocalParameter
units: 756622
value: 0.0

310324
type: LocalParameter
value: 0.0

310323
type: LocalParameter
units: 756574
value: 999999.0

310321
type: LocalParameter
units: 756574
value: 0.0

814744
type: SpeciesReference
stoichiometry: 1.0
species: 300414

814756
type: SpeciesReference
stoichiometry: 1.0
species: 300334

300334
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: ADP_C10H12N5O10P2

299944
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 1_2_Diacyl_sn_glycerol_ditetradecanoyl_n_C140_C31H60O5

302956
type: Reaction
product: 781358
reactant: 781322
kinetic law: 781419
reversible: false
reactant: 781346
notes: Abbreviation: R_FAS160_ap EC Number: 2.3.1.85 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: (3.0) M_h[ap] + M[m] alcoa[ap] + (2.0) M_nadph[ap] + M_ttdca[ap] --> M[c] o2[ap] + M[c] oa[ap] + M_h2o[ap] + M_hdca[ap] + (2.0) M_nadp[ap] genes: LOCUS:PFB0505c# LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFI1125c)
name: fatty-acid_synthase
reactant: 781310
product: 781407
product: 781370
product: 781395
reactant: 781334
product: 781383
fast: false

781358
type: SpeciesReference
stoichiometry: 1.0
species: 300512

781322
type: SpeciesReference
stoichiometry: 1.0
species: 301070

301070
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Malonyl_CoA_C24H33N7O19P3S

307302
type: LocalParameter
units: 756622
value: 0.0

307301
type: LocalParameter
value: 0.0

307299
type: LocalParameter
units: 756574
value: 999999.0

307298
type: LocalParameter
units: 756574
value: 0.0

781346
type: SpeciesReference
stoichiometry: 1.0
species: 301695

301695
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: tetradecanoate_n_C140_C14H27O2

781310
type: SpeciesReference
stoichiometry: 3.0
species: 300909

781407
type: SpeciesReference
stoichiometry: 2.0
species: 301140

781370
type: SpeciesReference
stoichiometry: 1.0
species: 300520

781395
type: SpeciesReference
stoichiometry: 1.0
species: 300931

300931
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Hexadecanoate_n_C160_C16H31O2

781334
type: SpeciesReference
stoichiometry: 2.0
species: 301146

781383
type: SpeciesReference
stoichiometry: 1.0
species: 300901

300588
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxycytidine_C9H13N3O4

303491
type: Reaction
reactant: 793900
product: 793936
reactant: 793888
reversible: false
product: 793924
kinetic law: 793948
name: CDP-diacylglycerol-glycerol-3-phosphate_3-phosphatidyltransferase
fast: false
notes: Abbreviation: R_PGSA141 EC Number: 2.7.8.5 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] dpdtdec7eg[c] + M_glyc3p[c] --> M[c] mp[c] + M_h[c] + M_pgp141[c] genes: LOCUS:MAL8P1_58# proteins: GENE ASSOCIATION: (MAL8P1_58)
product: 793912

793900
type: SpeciesReference
stoichiometry: 1.0
species: 300851

793936
type: SpeciesReference
stoichiometry: 1.0
species: 301364

301364
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_ditetradec_7_enoyl_n_C141_C34H61O13P2

793888
type: SpeciesReference
stoichiometry: 1.0
species: 300464

793924
type: SpeciesReference
stoichiometry: 1.0
species: 300911

308269
type: LocalParameter
units: 756622
value: 0.0

308268
type: LocalParameter
value: 0.0

308266
type: LocalParameter
units: 756574
value: 999999.0

308265
type: LocalParameter
units: 756574
value: 0.0

793912
type: SpeciesReference
stoichiometry: 1.0
species: 300510

300092
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Octaprenyl_6_methoxyphenol_C47H72O2

302767
type: Reaction
notes: Abbreviation: R_DOLK EC Number: 2.7.1.108 SUBSYSTEM: Lipids_DolicholMetabolism Equation: M[c] tp[c] + M_dolichol[c] --> M[c] dp[c] + M_dolp[c] + M_h[c] genes: LOCUS:PFA0485w# proteins: GENE ASSOCIATION: (PFA0485w)
reversible: false
reactant: 776350
reactant: 776362
fast: false
product: 776375
name: dolichol_kinase
kinetic law: 776412
product: 776387
product: 776400

776350
type: SpeciesReference
stoichiometry: 1.0
species: 300536

776362
type: SpeciesReference
stoichiometry: 1.0
species: 300648

300648
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dolichol_C15H28O

776375
type: SpeciesReference
stoichiometry: 1.0
species: 300436

300436
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: CDP_C9H12N3O11P2

306976
type: LocalParameter
units: 756622
value: 0.0

306974
type: LocalParameter
value: 0.0

306973
type: LocalParameter
units: 756574
value: 999999.0

306972
type: LocalParameter
units: 756574
value: 0.0

776387
type: SpeciesReference
stoichiometry: 1.0
species: 300656

300656
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dolichol_phosphate_C15H27O4P

776400
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302737
type: Reaction
reversible: true
reactant: 775190
product: 775226
product: 775214
product: 775250
notes: Abbreviation: R_lipid10 EC Number: SUBSYSTEM: Lipids Equation: M_pe[e] <==> M_pe120[e] + M_pe140[e] + M_pe141[e] + M_pe160[e] + M_pe161[e] + M_pe180[e] + M_pe181[e] genes: proteins: GENE ASSOCIATION:
fast: false
product: 775202
name: R_lipid10
product: 775238
kinetic law: 775286
product: 775274
product: 775262

775190
type: SpeciesReference
stoichiometry: 1.0
species: 301336

775226
type: SpeciesReference
stoichiometry: 1.0
species: 301316

775214
type: SpeciesReference
stoichiometry: 1.0
species: 301312

775250
type: SpeciesReference
stoichiometry: 1.0
species: 301324

301324
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_dihexadec_9enoyl_n_C161_C37H70N1O8P1

775202
type: SpeciesReference
stoichiometry: 1.0
species: 301308

301308
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_didodecanoyl_n_C120_C29H58N1O8P1

775238
type: SpeciesReference
stoichiometry: 1.0
species: 301320

306926
type: LocalParameter
units: 756622
value: 0.0

306924
type: LocalParameter
value: 0.0

306923
type: LocalParameter
units: 756574
value: 999999.0

306921
type: LocalParameter
units: 756574
value: -999999.0

775274
type: SpeciesReference
stoichiometry: 1.0
species: 301332

301332
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_dioctadec_11_enoyl_n_C181_C41H78N1O8P1

775262
type: SpeciesReference
stoichiometry: 1.0
species: 301328

301328
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: phosphatidylethanolamine_dioctadecanoyl_n_C180_C41H82N1O8P1

301352
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_dihexadecanoyl_n_C160_C38H74O10P1

304394
type: Reaction
kinetic law: 811800
product: 811787
reactant: 811775
notes: Abbreviation: R_COA2tap EC Number: SUBSYSTEM: Transport_AP Equation: M_hxcoa[ap] <==> M_hxcoa[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_COA2tap

309957
type: LocalParameter
units: 756622
value: 0.0

309956
type: LocalParameter
value: 0.0

309954
type: LocalParameter
units: 756574
value: 999999.0

309953
type: LocalParameter
units: 756574
value: -999999.0

811787
type: SpeciesReference
stoichiometry: 1.0
species: 300990

811775
type: SpeciesReference
stoichiometry: 1.0
species: 300988

303911
type: Reaction
notes: Abbreviation: R_ATPH2e EC Number: 3.6.1.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_adp[c] + M_h2o[c] --> M_amp[c] + M_h[c] + M_pi[c] genes: LOCUS:PF14_0297# proteins: GENE ASSOCIATION: (PF14_0297)
fast: false
reactant: 802924
product: 802936
reversible: false
kinetic law: 802972
product: 802948
reactant: 802912
product: 802960
name: apyrase

802924
type: SpeciesReference
stoichiometry: 1.0
species: 300903

802936
type: SpeciesReference
stoichiometry: 1.0
species: 300370

309072
type: LocalParameter
units: 756622
value: 0.0

309070
type: LocalParameter
value: 0.0

309069
type: LocalParameter
units: 756574
value: 999999.0

309067
type: LocalParameter
units: 756574
value: 0.0

802948
type: SpeciesReference
stoichiometry: 1.0
species: 300911

802912
type: SpeciesReference
stoichiometry: 1.0
species: 300332

802960
type: SpeciesReference
stoichiometry: 1.0
species: 301390

303722
type: Reaction
reactant: 798896
fast: false
name: guanylate_kinase
product: 798908
product: 798920
kinetic law: 798932
reversible: true
notes: Abbreviation: R_DGK1 EC Number: 2.7.4.8 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_atp[c] + M_dgmp[c] <==> M_adp[c] + M_dgdp[c] genes: LOCUS:PFI1420w# proteins: GENE ASSOCIATION: (PFI1420w)
reactant: 798884

798896
type: SpeciesReference
stoichiometry: 1.0
species: 300606

798908
type: SpeciesReference
stoichiometry: 1.0
species: 300332

798920
type: SpeciesReference
stoichiometry: 1.0
species: 300604

308725
type: LocalParameter
units: 756622
value: 0.0

308724
type: LocalParameter
value: 0.0

308722
type: LocalParameter
units: 756574
value: 999999.0

308721
type: LocalParameter
units: 756574
value: -999999.0

798884
type: SpeciesReference
stoichiometry: 1.0
species: 300414

303425
type: Reaction
reactant: 792289
notes: Abbreviation: R_PLIPA2E160pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pe160[c] --> M_1agpe160[c] + M_h[c] + M_hdca[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
fast: false
product: 792338
reversible: false
name: phospholipase_A2
reactant: 792301
kinetic law: 792350
product: 792313
product: 792326

792289
type: SpeciesReference
stoichiometry: 1.0
species: 300903

792338
type: SpeciesReference
stoichiometry: 1.0
species: 300933

792301
type: SpeciesReference
stoichiometry: 1.0
species: 301318

308148
type: LocalParameter
units: 756622
value: 0.0

308147
type: LocalParameter
value: 0.0

308145
type: LocalParameter
units: 756574
value: 999999.0

308144
type: LocalParameter
units: 756574
value: 0.0

792313
type: SpeciesReference
stoichiometry: 1.0
species: 299976

299976
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C160_C21H44NO7P1

792326
type: SpeciesReference
stoichiometry: 1.0
species: 300911

303365
type: Reaction
kinetic law: 790899
notes: Abbreviation: R_LPLIPAL2E180 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpe180[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_ocdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reversible: false
reactant: 790850
reactant: 790838
product: 790862
product: 790874
fast: false
product: 790887
name: lysophospholipase

308038
type: LocalParameter
units: 756622
value: 0.0

308037
type: LocalParameter
value: 0.0

308035
type: LocalParameter
units: 756574
value: 999999.0

308034
type: LocalParameter
units: 756574
value: 0.0

790850
type: SpeciesReference
stoichiometry: 1.0
species: 300903

790838
type: SpeciesReference
stoichiometry: 1.0
species: 300040

300040
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoethanolamine_n_C180_C23H48NO7P1

790862
type: SpeciesReference
stoichiometry: 1.0
species: 300775

790874
type: SpeciesReference
stoichiometry: 1.0
species: 300911

790887
type: SpeciesReference
stoichiometry: 1.0
species: 301214

303068
type: Reaction
reactant: 783776
product: 783800
product: 783825
reversible: false
name: R_GPIMTer_L
reactant: 783788
kinetic law: 783837
product: 783812
fast: false
notes: Abbreviation: R_GPIMTer_L EC Number: SUBSYSTEM: Lipids_GPIAnchorBiosynthesis Equation: (0.1) M_dolmanp_L[c] + M_gacpail[c] --> (0.1) M_dolp_L[c] + M_h[c] + M[m] gacpail[c] genes: proteins: GENE ASSOCIATION:

783776
type: SpeciesReference
stoichiometry: 0.1
species: 300650

300650
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Dolichyl phosphate D-mannose

783800
type: SpeciesReference
stoichiometry: 0.1
species: 300654

783825
type: SpeciesReference
stoichiometry: 1.0
species: 301092

783788
type: SpeciesReference
stoichiometry: 1.0
species: 300787

307497
type: LocalParameter
units: 756622
value: 0.0

307496
type: LocalParameter
value: 0.0

307494
type: LocalParameter
units: 756574
value: 999999.0

307493
type: LocalParameter
units: 756574
value: 0.0

783812
type: SpeciesReference
stoichiometry: 1.0
species: 300911

303539
type: Reaction
reactant: 794913
product: 794937
name: phosphatidylglycerophosphatase
reactant: 794925
product: 794949
notes: Abbreviation: R_PGPP180pp EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp180[c] --> M_pg180[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
reversible: false
kinetic law: 794961
fast: false

794913
type: SpeciesReference
stoichiometry: 1.0
species: 300903

794937
type: SpeciesReference
stoichiometry: 1.0
species: 301356

794925
type: SpeciesReference
stoichiometry: 1.0
species: 301370

301370
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_dioctadecanoyl_n_C180_C42H81O13P2

794949
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308357
type: LocalParameter
units: 756622
value: 0.0

308356
type: LocalParameter
value: 0.0

308354
type: LocalParameter
units: 756574
value: 999999.0

308353
type: LocalParameter
units: 756574
value: 0.0

302261
type: Reaction
notes: Abbreviation: R_DHPS2 EC Number: 2.5.1.15 SUBSYSTEM: Cofactors_FolateBiosynthesis Equation: M_4abz[c] + M_6hmhptpp[c] --> M_dhpt[c] + M_ppi[c] genes: LOCUS:PF08_0095# proteins: GENE ASSOCIATION: (PF08_0095)
kinetic law: 766411
reactant: 766375
name: dihydropteroate_synthase
fast: false
product: 766387
reversible: false
reactant: 766363
product: 766399

306009
type: LocalParameter
units: 756622
value: 0.0

306008
type: LocalParameter
value: 0.0

306007
type: LocalParameter
units: 756574
value: 999999.0

306005
type: LocalParameter
units: 756574
value: 0.0

766375
type: SpeciesReference
stoichiometry: 1.0
species: 300262

766387
type: SpeciesReference
stoichiometry: 1.0
species: 300630

766363
type: SpeciesReference
stoichiometry: 1.0
species: 300204

300204
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Aminobenzoate_C7H6NO2

766399
type: SpeciesReference
stoichiometry: 1.0
species: 301416

300156
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

304328
type: Reaction
kinetic law: 810994
product: 810981
reactant: 810969
notes: Abbreviation: R_NH4tap EC Number: SUBSYSTEM: Transport_AP Equation: M_nh4[ap] <==> M_nh4[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_NH4tap

309836
type: LocalParameter
units: 756622
value: 0.0

309835
type: LocalParameter
value: 0.0

309833
type: LocalParameter
units: 756574
value: 999999.0

309832
type: LocalParameter
units: 756574
value: -999999.0

810981
type: SpeciesReference
stoichiometry: 1.0
species: 301160

810969
type: SpeciesReference
stoichiometry: 1.0
species: 301158

301158
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Ammonium_H4N

302019
type: Reaction
kinetic law: 757994
reactant: 757909
product: 757945
name: Glutamate-ammonia_ligase
product: 757982
notes: Abbreviation: R_GLNS EC Number: 6.3.1.2 SUBSYSTEM: AminoAcids_GluMetabolism ; AminoAcids_NitrogenMetabolism Equation: M_atp[c] + M_glu_L[c] + M_nh4[c] --> M_adp[c] + M_gln_L[c] + M_h[c] + M_pi[c] genes: LOCUS:PFI1110w# proteins: GENE ASSOCIATION: (PFI1110w)
product: 757970
fast: false
reactant: 757933
reversible: false
reactant: 757921
product: 757957

304912
type: LocalParameter
units: 756622
value: 0.0

304909
type: LocalParameter
value: 0.0

304906
type: LocalParameter
units: 756574
value: 999999.0

304905
type: LocalParameter
units: 756574
value: 0.0

757909
type: SpeciesReference
stoichiometry: 1.0
species: 300414

757945
type: SpeciesReference
stoichiometry: 1.0
species: 300332

757982
type: SpeciesReference
stoichiometry: 1.0
species: 301390

757970
type: SpeciesReference
stoichiometry: 1.0
species: 300911

757933
type: SpeciesReference
stoichiometry: 1.0
species: 301160

757921
type: SpeciesReference
stoichiometry: 1.0
species: 300829

757957
type: SpeciesReference
stoichiometry: 1.0
species: 300819

302967
type: Reaction
notes: Abbreviation: R_FAS80_L_ap EC Number: 2.3.1.85 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_accoa[ap] + (8.0) M_h[ap] + (3.0) M[m] alcoa[ap] + (6.0) M_nadph[ap] --> (3.0) M[c] o2[ap] + (4.0) M[c] oa[ap] + (2.0) M_h2o[ap] + (6.0) M_nadp[ap] + M_octa[ap] genes: LOCUS:PFB0505c# LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFI1125c)
reversible: false
product: 781887
name: fatty-acid_synthase
product: 781875
reactant: 781791
product: 781863
reactant: 781827
fast: false
product: 781851
reactant: 781803
kinetic law: 781899
product: 781839
reactant: 781815

781887
type: SpeciesReference
stoichiometry: 1.0
species: 301226

301226
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: octanoate_n_C80_C8H15O2

781875
type: SpeciesReference
stoichiometry: 6.0
species: 301140

781791
type: SpeciesReference
stoichiometry: 1.0
species: 300300

300300
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Acetyl_CoA_C23H34N7O17P3S

781863
type: SpeciesReference
stoichiometry: 2.0
species: 300901

781827
type: SpeciesReference
stoichiometry: 6.0
species: 301146

781851
type: SpeciesReference
stoichiometry: 4.0
species: 300520

781803
type: SpeciesReference
stoichiometry: 8.0
species: 300909

307323
type: LocalParameter
units: 756622
value: 0.0

307322
type: LocalParameter
value: 0.0

307320
type: LocalParameter
units: 756574
value: 999999.0

307319
type: LocalParameter
units: 756574
value: 0.0

781839
type: SpeciesReference
stoichiometry: 3.0
species: 300512

781815
type: SpeciesReference
stoichiometry: 3.0
species: 301070

300442
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

304703
type: Reaction
kinetic law: 816193
product: 816181
reactant: 816169
notes: Abbreviation: R_OCTDPtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_octdp[m] <==> M_octdp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_OCTDPtmt

310524
type: LocalParameter
units: 756622
value: 0.0

310522
type: LocalParameter
value: 0.0

310521
type: LocalParameter
units: 756574
value: 999999.0

310519
type: LocalParameter
units: 756574
value: -999999.0

816181
type: SpeciesReference
stoichiometry: 1.0
species: 301232

816169
type: SpeciesReference
stoichiometry: 1.0
species: 301234

301234
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: all_trans_Octaprenyl_diphosphate_C40H65O7P2

304022
type: Reaction
product: 805477
reactant: 805429
kinetic law: 805501
product: 805489
product: 805465
name: succinate-CoA_ligase_(GDP-forming)
reversible: true
reactant: 805441
notes: Abbreviation: R_SUCOAS1m_mt EC Number: 6.2.1.4 SUBSYSTEM: Others_MitochondrialTCACycle Equation: M[c] oa[m] + M_gtp[m] + M_succ[m] <==> M_gdp[m] + M_pi[m] + M_succoa[m] genes: LOCUS:PF11_0097# proteins: GENE ASSOCIATION: (PF11_0097)
reactant: 805453
fast: false

805477
type: SpeciesReference
stoichiometry: 1.0
species: 301394

805429
type: SpeciesReference
stoichiometry: 1.0
species: 300524

309275
type: LocalParameter
units: 756622
value: 0.0

309274
type: LocalParameter
value: 0.0

309272
type: LocalParameter
units: 756574
value: 999999.0

309271
type: LocalParameter
units: 756574
value: -999999.0

805489
type: SpeciesReference
stoichiometry: 1.0
species: 301569

805465
type: SpeciesReference
stoichiometry: 1.0
species: 300803

805441
type: SpeciesReference
stoichiometry: 1.0
species: 300887

300887
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: GTP_C10H12N5O14P3

805453
type: SpeciesReference
stoichiometry: 1.0
species: 301567

302509
type: Reaction
kinetic law: 772224
product: 772211
reactant: 772199
notes: Abbreviation: R_EX_fru_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_fru <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_fru_e_

306519
type: LocalParameter
units: 756622
value: 0.0

306518
type: LocalParameter
value: 0.0

306517
type: LocalParameter
units: 756574
value: 999999.0

306515
type: LocalParameter
units: 756574
value: -999999.0

772211
type: SpeciesReference
stoichiometry: 1.0
species: 301836

301836
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Fructose_C6H12O6

772199
type: SpeciesReference
stoichiometry: 1.0
species: 300755

300755
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Fructose_C6H12O6

302394
type: Reaction
fast: false
kinetic law: 770434
notes: Abbreviation: R_HYPOE EC Number: 3.1.3.74 SUBSYSTEM: Cofactors_VitB6Metabolism Equation: M_h2o[c] + M_pyam5p[c] --> M_pi[c] + M_pydam[c] genes: proteins: GENE ASSOCIATION:
name: pyridoxal_phosphatase
product: 770410
reactant: 770385
reversible: false
reactant: 770398
product: 770422

306309
type: LocalParameter
units: 756622
value: 0.0

306308
type: LocalParameter
value: 0.0

306307
type: LocalParameter
units: 756574
value: 999999.0

306305
type: LocalParameter
units: 756574
value: 0.0

770410
type: SpeciesReference
stoichiometry: 1.0
species: 301390

770385
type: SpeciesReference
stoichiometry: 1.0
species: 300903

770398
type: SpeciesReference
stoichiometry: 1.0
species: 301477

770422
type: SpeciesReference
stoichiometry: 1.0
species: 301479

301479
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Pyridoxamine_C8H13N2O2

302097
type: Reaction
fast: false
kinetic law: 761022
notes: Abbreviation: R_PHETRS EC Number: 6.1.1.20 SUBSYSTEM: AminoAcids_PheTyrMetabolism Equation: M_atp[c] + M_phe_L[c] + M_trnaphe[c] --> M_amp[c] + M_phetrna[c] + M_ppi[c] genes: LOCUS:PF11_0051# LOCUS:PFA0480w# LOCUS:PFF0180w# LOCUS:PFL1540c# proteins: GENE ASSOCIATION: (PF11_0051) or (PFA0480w) or (PFF0180w) or (PFL1540c)
reactant: 760960
name: Phenylalanine-tRNA_ligase
product: 761010
reversible: false
reactant: 760948
product: 760997
product: 760984
reactant: 760972

305230
type: LocalParameter
units: 756622
value: 0.0

305227
type: LocalParameter
value: 0.0

305224
type: LocalParameter
units: 756574
value: 999999.0

305223
type: LocalParameter
units: 756574
value: 0.0

760960
type: SpeciesReference
stoichiometry: 1.0
species: 301374

761010
type: SpeciesReference
stoichiometry: 1.0
species: 301416

760948
type: SpeciesReference
stoichiometry: 1.0
species: 300414

760997
type: SpeciesReference
stoichiometry: 1.0
species: 301384

760984
type: SpeciesReference
stoichiometry: 1.0
species: 300370

760972
type: SpeciesReference
stoichiometry: 1.0
species: 301671

301671
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Phe_R

301892
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Lactate_C3H5O3

300805
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

303242
type: Reaction
reactant: 787785
fast: false
reactant: 787797
name: glycerophosphodiester_phosphodiesterase
product: 787809
product: 787821
reversible: false
kinetic law: 787845
notes: Abbreviation: R_GPDDA1pp EC Number: 3.1.4.46 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_g3pc[c] + M_h2o[c] --> M[c] hol[c] + M_glyc3p[c] + M_h[c] genes: LOCUS:PF14_0060# proteins: GENE ASSOCIATION: (PF14_0060)
product: 787833

787785
type: SpeciesReference
stoichiometry: 1.0
species: 300773

300773
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: sn_Glycero_3_phosphocholine_C8H20NO6P

787797
type: SpeciesReference
stoichiometry: 1.0
species: 300903

787809
type: SpeciesReference
stoichiometry: 1.0
species: 300474

787821
type: SpeciesReference
stoichiometry: 1.0
species: 300851

307807
type: LocalParameter
units: 756622
value: 0.0

307806
type: LocalParameter
value: 0.0

307804
type: LocalParameter
units: 756574
value: 999999.0

307803
type: LocalParameter
units: 756574
value: 0.0

787833
type: SpeciesReference
stoichiometry: 1.0
species: 300911

304289
type: Reaction
notes: Abbreviation: R_PROt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_h[e] + M_pro_L[e] <==> M_h[c] + M_pro_L[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
reactant: 810268
reactant: 810256
product: 810292
name: R_PROt2r
reversible: true
fast: false
product: 810280
kinetic law: 810304

810268
type: SpeciesReference
stoichiometry: 1.0
species: 301436

810256
type: SpeciesReference
stoichiometry: 1.0
species: 300913

810292
type: SpeciesReference
stoichiometry: 1.0
species: 301434

810280
type: SpeciesReference
stoichiometry: 1.0
species: 300911

309765
type: LocalParameter
units: 756622
value: 0.0

309763
type: LocalParameter
value: 0.0

309762
type: LocalParameter
units: 756574
value: 999999.0

309760
type: LocalParameter
units: 756574
value: -999999.0

304664
type: Reaction
kinetic law: 815722
product: 815710
reactant: 815698
notes: Abbreviation: R_GLYC3Ptmt EC Number: SUBSYSTEM: Transport_MT Equation: M_glyc3p[m] <==> M_glyc3p[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_GLYC3Ptmt

310452
type: LocalParameter
units: 756622
value: 0.0

310451
type: LocalParameter
value: 0.0

310449
type: LocalParameter
units: 756574
value: 999999.0

310448
type: LocalParameter
units: 756574
value: -999999.0

815710
type: SpeciesReference
stoichiometry: 1.0
species: 300851

815698
type: SpeciesReference
stoichiometry: 1.0
species: 300853

302271
type: Reaction
kinetic law: 766729
product: 766717
product: 766704
reactant: 766692
notes: Abbreviation: R_PTHPS EC Number: 4.2.3.12 SUBSYSTEM: Cofactors_FolateBiosynthesis Equation: M_ahdt[c] --> M_6pthp[c] + M_pppi[c] genes: LOCUS:PFF1360w# proteins: GENE ASSOCIATION: (PFF1360w)
fast: false
reversible: false
name: 6-pyruvoyltetrahydropterin_synthase

306039
type: LocalParameter
units: 756622
value: 0.0

306038
type: LocalParameter
value: 0.0

306037
type: LocalParameter
units: 756574
value: 999999.0

306035
type: LocalParameter
units: 756574
value: 0.0

766717
type: SpeciesReference
stoichiometry: 1.0
species: 301432

301432
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Inorganic_triphosphate_HO10P3

766704
type: SpeciesReference
stoichiometry: 1.0
species: 300268

300268
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 6-Pyruvoyl-5,6,7,8-tetrahydropterin_C9H11N5O3

766692
type: SpeciesReference
stoichiometry: 1.0
species: 300340

300340
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Amino_4_hydroxy_6_erythro_1_2_3_trihydroxypropyl_dihydropteridine_triphosphate_C9H12N5O13P3

303560
type: Reaction
reactant: 795383
product: 795420
kinetic law: 795432
product: 795395
product: 795408
notes: Abbreviation: R_DSAT EC Number: 2.3.1.24 SUBSYSTEM: Lipids_SphingomyelinCeramideMetabolism Equation: M_Rtotalcoa[c] + M_sphgn[c] --> M[c] oa[c] + M_dhcrm[c] + M_h[c] genes: LOCUS:PFE0405c# proteins: GENE ASSOCIATION: (PFE0405c)
name: sphingosine_N-acyltransferase
reversible: false
reactant: 795371
fast: false

795383
type: SpeciesReference
stoichiometry: 1.0
species: 301549

301549
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Sphinganine_C18H40NO2

795420
type: SpeciesReference
stoichiometry: 1.0
species: 300911

308396
type: LocalParameter
units: 756622
value: 0.0

308394
type: LocalParameter
value: 0.0

308393
type: LocalParameter
units: 756574
value: 999999.0

308391
type: LocalParameter
units: 756574
value: 0.0

795395
type: SpeciesReference
stoichiometry: 1.0
species: 300522

795408
type: SpeciesReference
stoichiometry: 1.0
species: 300620

300620
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dihydroceramide

795371
type: SpeciesReference
stoichiometry: 1.0
species: 300284

302155
type: Reaction
kinetic law: 762952
product: 762940
reactant: 762927
notes: Abbreviation: R_PGMT EC Number: 5.4.2.2 SUBSYSTEM: Carbohydrates_Glycolysis ; Carbohydrates_PentosePhosphateCycle Equation: M_g1p[c] <==> M_g6p[c] genes: LOCUS:PF10_0122# proteins: GENE ASSOCIATION: (PF10_0122)
fast: false
reversible: true
name: Phosphoglucomutase

305512
type: LocalParameter
units: 756622
value: 0.0

305509
type: LocalParameter
value: 0.0

305506
type: LocalParameter
units: 756574
value: 999999.0

305503
type: LocalParameter
units: 756574
value: -999999.0

762940
type: SpeciesReference
stoichiometry: 1.0
species: 300783

762927
type: SpeciesReference
stoichiometry: 1.0
species: 300763

302806
type: Reaction
reactant: 777276
kinetic law: 777324
reactant: 777288
reversible: true
product: 777300
notes: Abbreviation: R_3OAR160_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3opalmACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hpalmACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777264
product: 777312
fast: false
name: 3-oxoacyl-[acyl-carrier-protein]_reductase

777276
type: SpeciesReference
stoichiometry: 1.0
species: 300909

307043
type: LocalParameter
units: 756622
value: 0.0

307041
type: LocalParameter
value: 0.0

307040
type: LocalParameter
units: 756574
value: 999999.0

307039
type: LocalParameter
units: 756574
value: -999999.0

777288
type: SpeciesReference
stoichiometry: 1.0
species: 301146

777300
type: SpeciesReference
stoichiometry: 1.0
species: 300146

777264
type: SpeciesReference
stoichiometry: 1.0
species: 300188

777312
type: SpeciesReference
stoichiometry: 1.0
species: 301140

300174
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Oxohexadecanoyl_CoA_C37H60N7O18P3S

304166
type: Reaction
kinetic law: 808047
product: 808035
reactant: 808023
notes: Abbreviation: R_NOt EC Number: SUBSYSTEM: Transport Equation: M_no[e] <==> M_no[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_NOt

309539
type: LocalParameter
units: 756622
value: 0.0

309538
type: LocalParameter
value: 0.0

309536
type: LocalParameter
units: 756574
value: 999999.0

309535
type: LocalParameter
units: 756574
value: -999999.0

808035
type: SpeciesReference
stoichiometry: 1.0
species: 301180

301180
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Nitric_oxide_NO

808023
type: SpeciesReference
stoichiometry: 1.0
species: 301182

304541
type: Reaction
product: 813812
name: R_THMt3
notes: Abbreviation: R_THMt3 EC Number: SUBSYSTEM: Transport_cofactor Equation: M_h[c] + M_thm[e] <==> M_h[e] + M_thm[c] genes: proteins: GENE ASSOCIATION:
kinetic law: 813825
fast: false
product: 813799
reactant: 813787
reactant: 813775
reversible: true

813812
type: SpeciesReference
stoichiometry: 1.0
species: 301611

301611
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Thiamin_C12H17N4OS

310227
type: LocalParameter
units: 756622
value: 0.0

310225
type: LocalParameter
value: 0.0

310224
type: LocalParameter
units: 756574
value: 999999.0

310222
type: LocalParameter
units: 756574
value: -999999.0

813799
type: SpeciesReference
stoichiometry: 1.0
species: 300913

813787
type: SpeciesReference
stoichiometry: 1.0
species: 301613

301613
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Thiamin_C12H17N4OS

813775
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302902
type: Reaction
reactant: 779753
fast: false
product: 779765
notes: Abbreviation: R_EAR180x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_toctd2eACP[ap] --> M_nad[ap] + M_ocdcaACP[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
reactant: 779741
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
reversible: false
reactant: 779729
kinetic law: 779790
product: 779777

779753
type: SpeciesReference
stoichiometry: 1.0
species: 301633

301633
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779765
type: SpeciesReference
stoichiometry: 1.0
species: 301128

779741
type: SpeciesReference
stoichiometry: 1.0
species: 301134

779729
type: SpeciesReference
stoichiometry: 1.0
species: 300909

307210
type: LocalParameter
units: 756622
value: 0.0

307208
type: LocalParameter
value: 0.0

307207
type: LocalParameter
units: 756574
value: 999999.0

307206
type: LocalParameter
units: 756574
value: 0.0

779777
type: SpeciesReference
stoichiometry: 1.0
species: 301210

303608
type: Reaction
reactant: 796565
fast: false
kinetic law: 796601
notes: Abbreviation: R_LCAT1e EC Number: 2.3.1.43 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M[c] hsterol[c] + M_pc[c] --> M_lpchol[c] + M_xolest2[c] genes: LOCUS:PFF1420w# proteins: GENE ASSOCIATION: (PFF1420w)
reactant: 796553
product: 796589
product: 796577
name: phosphatidylcholine-sterol_O-acyltransferase
reversible: false

796565
type: SpeciesReference
stoichiometry: 1.0
species: 301300

308484
type: LocalParameter
units: 756622
value: 0.0

308482
type: LocalParameter
value: 0.0

308481
type: LocalParameter
units: 756574
value: 999999.0

308479
type: LocalParameter
units: 756574
value: 0.0

796553
type: SpeciesReference
stoichiometry: 1.0
species: 300482

300482
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: holesterol_C27H46O

796589
type: SpeciesReference
stoichiometry: 1.0
species: 301757

301757
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: cholesterol_ester

796577
type: SpeciesReference
stoichiometry: 1.0
species: 301044

301044
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: lysophosphatidylcholine

303080
type: Reaction
kinetic law: 784102
reversible: false
notes: Abbreviation: R_MI145P6K EC Number: 2.7.1.151 SUBSYSTEM: Lipids_InositolPhosphateMetabolism Equation: M_atp[c] + M[m] i145p[c] --> M_adp[c] + M_h[c] + M[m] i1456p[c] genes: LOCUS:PF13_0089# proteins: GENE ASSOCIATION: (PF13_0089)
fast: false
name: inositol-polyphosphate_multikinase
product: 784090
product: 784066
reactant: 784054
product: 784078
reactant: 784042

307518
type: LocalParameter
units: 756622
value: 0.0

307517
type: LocalParameter
value: 0.0

307515
type: LocalParameter
units: 756574
value: 999999.0

307514
type: LocalParameter
units: 756574
value: 0.0

784090
type: SpeciesReference
stoichiometry: 1.0
species: 301100

301100
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D-myo-Inositol 1,4,5,6-tetrakisphosphate_C6H8O18P4

784066
type: SpeciesReference
stoichiometry: 1.0
species: 300332

784054
type: SpeciesReference
stoichiometry: 1.0
species: 301102

784078
type: SpeciesReference
stoichiometry: 1.0
species: 300911

784042
type: SpeciesReference
stoichiometry: 1.0
species: 300414

302797
type: Reaction
fast: false
product: 777084
notes: Abbreviation: R_3OAR121_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ocddec5eACP[ap] + M_h[ap] + M_nadph[ap] --> M_3hcddec5eACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reactant: 777048
kinetic law: 777108
reactant: 777060
product: 777096
reversible: false
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
reactant: 777072

777084
type: SpeciesReference
stoichiometry: 1.0
species: 300124

777048
type: SpeciesReference
stoichiometry: 1.0
species: 300156

307028
type: LocalParameter
units: 756622
value: 0.0

307026
type: LocalParameter
value: 0.0

307025
type: LocalParameter
units: 756574
value: 999999.0

307024
type: LocalParameter
units: 756574
value: 0.0

777060
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777096
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777072
type: SpeciesReference
stoichiometry: 1.0
species: 301146

303269
type: Reaction
product: 788462
reversible: false
reactant: 788450
notes: Abbreviation: R_LPLIPAL1A120pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1ddecg3p[c] + M_h2o[c] --> M_ddca[c] + M_glyc3p[c] + M_h[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 788438
name: lysophospholipase
product: 788486
fast: false
product: 788474
kinetic law: 788498

788462
type: SpeciesReference
stoichiometry: 1.0
species: 300594

788450
type: SpeciesReference
stoichiometry: 1.0
species: 300903

788438
type: SpeciesReference
stoichiometry: 1.0
species: 300000

300000
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_dodecanoyl_sn_glycerol_3_phosphate_C15H29O7P1

788486
type: SpeciesReference
stoichiometry: 1.0
species: 300911

788474
type: SpeciesReference
stoichiometry: 1.0
species: 300851

307857
type: LocalParameter
units: 756622
value: 0.0

307855
type: LocalParameter
value: 0.0

307854
type: LocalParameter
units: 756574
value: 999999.0

307852
type: LocalParameter
units: 756574
value: 0.0

300358
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Alanyl_tRNA_Ala_C3H6NOR

303311
type: Reaction
product: 789559
reactant: 789535
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL1G140pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpg140[c] + M_h2o[c] --> M_g3pg[c] + M_h[c] + M_ttdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
kinetic law: 789595
product: 789571
reversible: false
fast: false
product: 789583
reactant: 789547

789559
type: SpeciesReference
stoichiometry: 1.0
species: 300777

789535
type: SpeciesReference
stoichiometry: 1.0
species: 299986

299986
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoglycerol_n_C140_C20H40O9P1

307939
type: LocalParameter
units: 756622
value: 0.0

307938
type: LocalParameter
value: 0.0

307936
type: LocalParameter
units: 756574
value: 999999.0

307935
type: LocalParameter
units: 756574
value: 0.0

789571
type: SpeciesReference
stoichiometry: 1.0
species: 300911

789583
type: SpeciesReference
stoichiometry: 1.0
species: 301697

789547
type: SpeciesReference
stoichiometry: 1.0
species: 300903

300240
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N_R_4_Phosphopantothenoyl_L_cysteine_C12H20N2O9PS

302165
type: Reaction
name: glycerol-3-phosphate_dehydrogenase_(NAD+)
fast: false
kinetic law: 763247
reactant: 763196
product: 763234
reversible: false
reactant: 763208
product: 763221
reactant: 763183
notes: Abbreviation: R_G3PD1ir_ap EC Number: 1.1.1.8 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Others_MitochondrialElectronFlow ; Carbohydrates_Glycolysis ; Lipids_UtilizationPhospholipids Equation: M_dhap[ap] + M_h[ap] + M_nadh[ap] --> M_glyc3p[ap] + M_nad[ap] genes: LOCUS:PF11_0157# proteins: GENE ASSOCIATION: (PF11_0157)

305562
type: LocalParameter
units: 756622
value: 0.0

305559
type: LocalParameter
value: 0.0

305556
type: LocalParameter
units: 756574
value: 999999.0

305553
type: LocalParameter
units: 756574
value: 0.0

763196
type: SpeciesReference
stoichiometry: 1.0
species: 300909

763234
type: SpeciesReference
stoichiometry: 1.0
species: 301128

763208
type: SpeciesReference
stoichiometry: 1.0
species: 301134

763221
type: SpeciesReference
stoichiometry: 1.0
species: 300849

763183
type: SpeciesReference
stoichiometry: 1.0
species: 300614

302299
type: Reaction
name: coproporphyrinogen_oxidase
notes: Abbreviation: R_CPPPGO_mt EC Number: 1.3.3.3 SUBSYSTEM: Cofactors_PorphyrinMetabolism Equation: M[c] pppg3[m] + (2.0) M_h[m] + M_o2[m] --> (2.0) M[c] o2[m] + (2.0) M_h2o[m] + M_pppg9[m] genes: LOCUS:PF11_0436# proteins: GENE ASSOCIATION: (PF11_0436)
product: 767827
reactant: 767801
kinetic law: 767866
reversible: false
reactant: 767814
reactant: 767788
product: 767840
product: 767853
fast: false

767827
type: SpeciesReference
stoichiometry: 2.0
species: 300518

767801
type: SpeciesReference
stoichiometry: 2.0
species: 300915

306109
type: LocalParameter
units: 756622
value: 0.0

306108
type: LocalParameter
value: 0.0

306107
type: LocalParameter
units: 756574
value: 999999.0

306105
type: LocalParameter
units: 756574
value: 0.0

767814
type: SpeciesReference
stoichiometry: 1.0
species: 301190

767788
type: SpeciesReference
stoichiometry: 1.0
species: 300530

767840
type: SpeciesReference
stoichiometry: 2.0
species: 300907

767853
type: SpeciesReference
stoichiometry: 1.0
species: 301430

302674
type: Reaction
kinetic law: 774305
product: 774293
reactant: 774281
notes: Abbreviation: R_EX_ser_L_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_ser_L <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_ser_L_e_

306813
type: LocalParameter
units: 756622
value: 0.0

306812
type: LocalParameter
value: 0.0

306810
type: LocalParameter
units: 756574
value: 999999.0

306809
type: LocalParameter
units: 756574
value: -999999.0

774293
type: SpeciesReference
stoichiometry: 1.0
species: 301950

301950
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Serine_C3H7NO3

774281
type: SpeciesReference
stoichiometry: 1.0
species: 301535

301535
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Serine_C3H7NO3

304733
type: Reaction
kinetic law: 816558
product: 816545
reactant: 816533
notes: Abbreviation: R_PENDPtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_pendp[m] <==> M_pendp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PENDPtmt

310579
type: LocalParameter
units: 756622
value: 0.0

310577
type: LocalParameter
value: 0.0

310576
type: LocalParameter
units: 756574
value: 999999.0

310574
type: LocalParameter
units: 756574
value: -999999.0

816545
type: SpeciesReference
stoichiometry: 1.0
species: 301338

816533
type: SpeciesReference
stoichiometry: 1.0
species: 301340

304436
type: Reaction
kinetic law: 812331
product: 812319
reactant: 812307
notes: Abbreviation: R_H2Otap EC Number: SUBSYSTEM: Transport_AP Equation: M_h2o[ap] <==> M_h2o[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_H2Otap

310034
type: LocalParameter
units: 756622
value: 0.0

310033
type: LocalParameter
value: 0.0

310031
type: LocalParameter
units: 756574
value: 999999.0

310030
type: LocalParameter
units: 756574
value: -999999.0

812319
type: SpeciesReference
stoichiometry: 1.0
species: 300903

812307
type: SpeciesReference
stoichiometry: 1.0
species: 300901

300719
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Fructose_1_6_bisphosphate_C6H10O12P2

303587
type: Reaction
product: 796022
product: 796010
kinetic law: 796034
fast: false
name: trans-pentaprenyltranstransferase
reversible: false
notes: Abbreviation: R_PPTT_mt EC Number: 2.5.1.33 SUBSYSTEM: Lipids_TerpenoidMetabolism Equation: M_ipdp[m] + M_pendp[m] --> M_hexdp[m] + M_ppi[m] genes: LOCUS:PFB0130w# proteins: GENE ASSOCIATION: (PFB0130w)
reactant: 795998
reactant: 795986

796022
type: SpeciesReference
stoichiometry: 1.0
species: 301418

796010
type: SpeciesReference
stoichiometry: 1.0
species: 300961

308445
type: LocalParameter
units: 756622
value: 0.0

308444
type: LocalParameter
value: 0.0

308442
type: LocalParameter
units: 756574
value: 999999.0

308441
type: LocalParameter
units: 756574
value: 0.0

795998
type: SpeciesReference
stoichiometry: 1.0
species: 301340

795986
type: SpeciesReference
stoichiometry: 1.0
species: 301020

301653
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Cys_R

300982
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hexanoate_n_C60_C6H11O2

304190
type: Reaction
reactant: 808362
notes: Abbreviation: R_PTRCt2 EC Number: SUBSYSTEM: Transport Equation: M_h[e] + M_ptrc[e] --> M_h[c] + M_ptrc[c] genes: proteins: GENE ASSOCIATION:
reactant: 808374
product: 808386
fast: false
name: R_PTRCt2
reversible: false
product: 808398
kinetic law: 808410

808362
type: SpeciesReference
stoichiometry: 1.0
species: 300913

808374
type: SpeciesReference
stoichiometry: 1.0
species: 301475

301475
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Putrescine_C4H14N2

808386
type: SpeciesReference
stoichiometry: 1.0
species: 300911

808398
type: SpeciesReference
stoichiometry: 1.0
species: 301473

309583
type: LocalParameter
units: 756622
value: 0.0

309582
type: LocalParameter
value: 0.0

309580
type: LocalParameter
units: 756574
value: 999999.0

309579
type: LocalParameter
units: 756574
value: 0.0

300192
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Oxotetradecanoyl_CoA_C35H56N7O18P3S

304235
type: Reaction
reactant: 809183
product: 809195
name: R_ARGt2r
notes: Abbreviation: R_ARGt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_arg_L[e] + M_h[e] <==> M_arg_L[c] + M_h[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
reactant: 809171
product: 809207
reversible: true
kinetic law: 809219
fast: false

809183
type: SpeciesReference
stoichiometry: 1.0
species: 300913

809195
type: SpeciesReference
stoichiometry: 1.0
species: 300392

809171
type: SpeciesReference
stoichiometry: 1.0
species: 300394

809207
type: SpeciesReference
stoichiometry: 1.0
species: 300911

309666
type: LocalParameter
units: 756622
value: 0.0

309664
type: LocalParameter
value: 0.0

309663
type: LocalParameter
units: 756574
value: 999999.0

309661
type: LocalParameter
units: 756574
value: -999999.0

301054
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha-D-Mannosyl)5-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol

302929
type: Reaction
notes: Abbreviation: R_FACOAL160t2pp_ap EC Number: 6.2.1.3 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_SphingomyelinCeramideMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_atp[ap] + M[c] oa[ap] + M_hdca[ap] --> M_amp[ap] + M_pmtcoa[ap] + M_ppi[ap] genes: LOCUS:MAL13P1_485# LOCUS:PF07_0129# LOCUS:PF14_0751# LOCUS:PF14_0761# LOCUS:PFB0685c# LOCUS:PFB0695c# LOCUS:PFC0050c# LOCUS:PFD0085c# LOCUS:PFE1250w# LOCUS:PFF0945c# LOCUS:PFL1880w# LOCUS:PFL2570w# proteins: GENE ASSOCIATION: (MAL13P1_485) or (PF07_0129) or (PF14_0751) or (PF14_0761) or (PFB0685c) or (PFB0695c) or (PFC0050c) or (PFD0085c) or (PFE1250w) or (PFF0945c) or (PFL1880w) or (PFL2570w)
product: 780472
name: Long-chain-fatty-acid-CoA_ligase
reactant: 780435
reactant: 780460
fast: false
product: 780496
product: 780484
reversible: false
reactant: 780447
kinetic law: 780508

780472
type: SpeciesReference
stoichiometry: 1.0
species: 300368

780435
type: SpeciesReference
stoichiometry: 1.0
species: 300412

780460
type: SpeciesReference
stoichiometry: 1.0
species: 300931

780496
type: SpeciesReference
stoichiometry: 1.0
species: 301414

780484
type: SpeciesReference
stoichiometry: 1.0
species: 301396

301396
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Palmitoyl_CoA_n_C160CoA_C37H62N7O17P3S

780447
type: SpeciesReference
stoichiometry: 1.0
species: 300520

307255
type: LocalParameter
units: 756622
value: 0.0

307253
type: LocalParameter
value: 0.0

307252
type: LocalParameter
units: 756574
value: 999999.0

307251
type: LocalParameter
units: 756574
value: 0.0

304610
type: Reaction
kinetic law: 815011
product: 814999
reactant: 814986
notes: Abbreviation: R_4HBAtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_4hba[m] <==> M_4hba[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_4HBAtmt

310353
type: LocalParameter
units: 756622
value: 0.0

310352
type: LocalParameter
value: 0.0

310350
type: LocalParameter
units: 756574
value: 999999.0

310349
type: LocalParameter
units: 756574
value: -999999.0

814999
type: SpeciesReference
stoichiometry: 1.0
species: 300218

300218
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Hydroxy_benzyl_alcohol_C7H8O2

814986
type: SpeciesReference
stoichiometry: 1.0
species: 300220

300220
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 4_Hydroxy_benzyl_alcohol_C7H8O2

302059
type: Reaction
fast: false
product: 759585
reversible: false
name: Valine-tRNA_ligase
reactant: 759549
reactant: 759573
reactant: 759561
kinetic law: 759621
notes: Abbreviation: R_VALTRS EC Number: 6.1.1.9 SUBSYSTEM: AminoAcids_LeuIleValMetabolism Equation: M_atp[c] + M_trnaval[c] + M_val_L[c] --> M_amp[c] + M_ppi[c] + M_valtrna[c] genes: LOCUS:PF14_0589# LOCUS:PFC0470w# proteins: GENE ASSOCIATION: (PF14_0589) or (PFC0470w)
product: 759597
product: 759609

759585
type: SpeciesReference
stoichiometry: 1.0
species: 300370

759549
type: SpeciesReference
stoichiometry: 1.0
species: 300414

759573
type: SpeciesReference
stoichiometry: 1.0
species: 301743

759561
type: SpeciesReference
stoichiometry: 1.0
species: 301685

301685
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Val_R

305076
type: LocalParameter
units: 756622
value: 0.0

305073
type: LocalParameter
value: 0.0

305070
type: LocalParameter
units: 756574
value: 999999.0

305067
type: LocalParameter
units: 756574
value: 0.0

759597
type: SpeciesReference
stoichiometry: 1.0
species: 301416

759609
type: SpeciesReference
stoichiometry: 1.0
species: 301747

302435
type: Reaction
kinetic law: 771280
product: 771268
reactant: 771256
notes: Abbreviation: R_EX_akg_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_akg <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_akg_e_

306389
type: LocalParameter
units: 756622
value: 0.0

306388
type: LocalParameter
value: 0.0

306387
type: LocalParameter
units: 756574
value: 999999.0

306385
type: LocalParameter
units: 756574
value: -999999.0

771268
type: SpeciesReference
stoichiometry: 1.0
species: 301783

771256
type: SpeciesReference
stoichiometry: 1.0
species: 300348

300348
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 2_Oxoglutarate_C5H4O5

303974
type: Reaction
notes: Abbreviation: R_TMDS EC Number: 2.1.1.45 SUBSYSTEM: Nucleotides_PyrimidineMetabolism ; Cofactors_FolateBiosynthesis Equation: M_dump[c] + M[m] lthf[c] --> M_dhf[c] + M_dtmp[c] genes: LOCUS:PFD0830w# proteins: GENE ASSOCIATION: (PFD0830w)
reactant: 804423
reactant: 804435
product: 804459
reversible: false
product: 804447
fast: false
kinetic law: 804471
name: thymidylate_synthase

804423
type: SpeciesReference
stoichiometry: 1.0
species: 300684

804435
type: SpeciesReference
stoichiometry: 1.0
species: 301112

804459
type: SpeciesReference
stoichiometry: 1.0
species: 300676

300676
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dTMP_C10H13N2O8P

804447
type: SpeciesReference
stoichiometry: 1.0
species: 300622

309187
type: LocalParameter
units: 756622
value: 0.0

309186
type: LocalParameter
value: 0.0

309184
type: LocalParameter
units: 756574
value: 999999.0

309183
type: LocalParameter
units: 756574
value: 0.0

300088
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinol_C48H74O4

302101
type: Reaction
kinetic law: 761168
reactant: 761119
reactant: 761131
product: 761143
name: tyrosine_transaminase
product: 761155
reversible: true
fast: false
notes: Abbreviation: R_TYRTA EC Number: 2.6.1.5 SUBSYSTEM: AminoAcids_PheTyrMetabolism Equation: M_akg[c] + M_tyr_L[c] <==> M_34hpp[c] + M_glu_L[c] genes: LOCUS:PFB0200c# proteins: GENE ASSOCIATION: (PFB0200c)

305246
type: LocalParameter
units: 756622
value: 0.0

305243
type: LocalParameter
value: 0.0

305240
type: LocalParameter
units: 756574
value: 999999.0

305239
type: LocalParameter
units: 756574
value: -999999.0

761119
type: SpeciesReference
stoichiometry: 1.0
species: 300346

761131
type: SpeciesReference
stoichiometry: 1.0
species: 301707

761143
type: SpeciesReference
stoichiometry: 1.0
species: 300104

300104
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_4_Hydroxyphenyl_pyruvate_C9H7O4

761155
type: SpeciesReference
stoichiometry: 1.0
species: 300829

303338
type: Reaction
name: lysophospholipase
kinetic law: 790247
reversible: false
notes: Abbreviation: R_LPLIPAL2A160 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2hdecg3p[c] + M_h2o[c] --> M_glyc3p[c] + (2.0) M_h[c] + M_hdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 790223
fast: false
product: 790211
reactant: 790187
product: 790235
reactant: 790199

307989
type: LocalParameter
units: 756622
value: 0.0

307987
type: LocalParameter
value: 0.0

307986
type: LocalParameter
units: 756574
value: 999999.0

307984
type: LocalParameter
units: 756574
value: 0.0

790223
type: SpeciesReference
stoichiometry: 2.0
species: 300911

790211
type: SpeciesReference
stoichiometry: 1.0
species: 300851

790187
type: SpeciesReference
stoichiometry: 1.0
species: 300070

790235
type: SpeciesReference
stoichiometry: 1.0
species: 300933

790199
type: SpeciesReference
stoichiometry: 1.0
species: 300903

300697
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 1_deoxy_D_xylulose_5_phosphate_C5H9O7P

304571
type: Reaction
kinetic law: 814297
product: 814285
reactant: 814273
notes: Abbreviation: R_OCDCAtr EC Number: SUBSYSTEM: Transport_lipid Equation: M_ocdca[e] <==> M_ocdca[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_OCDCAtr

310282
type: LocalParameter
units: 756622
value: 0.0

310280
type: LocalParameter
value: 0.0

310279
type: LocalParameter
units: 756574
value: 999999.0

310277
type: LocalParameter
units: 756574
value: -999999.0

814285
type: SpeciesReference
stoichiometry: 1.0
species: 301214

814273
type: SpeciesReference
stoichiometry: 1.0
species: 301216

300186
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Oxooctadecanoyl_CoA_C39H64N7O18P3S

300108
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_5_Cyclic_dAMP_C10H11N5O5P

302367
type: Reaction
kinetic law: 769769
product: 769757
product: 769745
reactant: 769733
notes: Abbreviation: R_CHRPL EC Number: 4.1.3.40 SUBSYSTEM: Cofactors_UbiquinoneMetabolism Equation: M[c] hor[c] --> M_4hbz[c] + M_pyr[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: false
name: chorismate_lyase

306259
type: LocalParameter
units: 756622
value: 0.0

306258
type: LocalParameter
value: 0.0

306257
type: LocalParameter
units: 756574
value: 999999.0

306255
type: LocalParameter
units: 756574
value: 0.0

769757
type: SpeciesReference
stoichiometry: 1.0
species: 301495

769745
type: SpeciesReference
stoichiometry: 1.0
species: 300222

769733
type: SpeciesReference
stoichiometry: 1.0
species: 300480

300480
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: chorismate_C10H8O6

302713
type: Reaction
kinetic law: 774778
product: 774766
reactant: 774754
notes: Abbreviation: R_EX_uri_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_uri <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_uri_e_

306884
type: LocalParameter
units: 756622
value: 0.0

306882
type: LocalParameter
value: 0.0

306881
type: LocalParameter
units: 756574
value: 999999.0

306880
type: LocalParameter
units: 756574
value: -999999.0

774766
type: SpeciesReference
stoichiometry: 1.0
species: 301976

301976
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Uridine_C9H12N2O6

774754
type: SpeciesReference
stoichiometry: 1.0
species: 301739

301739
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Uridine_C9H12N2O6

303656
type: Reaction
reactant: 797538
fast: false
product: 797550
notes: Abbreviation: R_PAPA120pp EC Number: 3.1.3.4 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pa120[c] --> M_12dgr120[c] + M_pi[c] genes: LOCUS:PFC0995c# proteins: GENE ASSOCIATION: (PFC0995c)
reactant: 797526
reversible: false
kinetic law: 797575
product: 797563
name: phosphatidate_phosphatase

797538
type: SpeciesReference
stoichiometry: 1.0
species: 301264

797550
type: SpeciesReference
stoichiometry: 1.0
species: 299938

797526
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308604
type: LocalParameter
units: 756622
value: 0.0

308603
type: LocalParameter
value: 0.0

308601
type: LocalParameter
units: 756574
value: 999999.0

308600
type: LocalParameter
units: 756574
value: 0.0

797563
type: SpeciesReference
stoichiometry: 1.0
species: 301390

304370
type: Reaction
kinetic law: 811508
product: 811496
reactant: 811484
notes: Abbreviation: R_PPPG9tap EC Number: SUBSYSTEM: Transport_AP Equation: M_pppg9[ap] <==> M_pppg9[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PPPG9tap

309913
type: LocalParameter
units: 756622
value: 0.0

309912
type: LocalParameter
value: 0.0

309910
type: LocalParameter
units: 756574
value: 999999.0

309909
type: LocalParameter
units: 756574
value: -999999.0

811496
type: SpeciesReference
stoichiometry: 1.0
species: 301428

811484
type: SpeciesReference
stoichiometry: 1.0
species: 301426

301426
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Protoporphyrinogen_IX_C34H38N4O4

302195
type: Reaction
reactant: 764110
product: 764134
product: 764146
reversible: true
fast: false
product: 764159
notes: Abbreviation: R_PRPPS EC Number: 2.7.6.1 SUBSYSTEM: Carbohydrates_PentosePhosphateCycle Equation: M_atp[c] + M_r5p[c] <==> M_amp[c] + M_h[c] + M_prpp[c] genes: LOCUS:PF13_0143# LOCUS:PF13_0157# proteins: GENE ASSOCIATION: (PF13_0143) or (PF13_0157)
kinetic law: 764171
reactant: 764122
name: ribose-phosphate_diphosphokinase

764110
type: SpeciesReference
stoichiometry: 1.0
species: 300414

764134
type: SpeciesReference
stoichiometry: 1.0
species: 300370

764146
type: SpeciesReference
stoichiometry: 1.0
species: 300911

764159
type: SpeciesReference
stoichiometry: 1.0
species: 301442

305739
type: LocalParameter
units: 756622
value: 0.0

305736
type: LocalParameter
value: 0.0

305733
type: LocalParameter
units: 756574
value: 999999.0

305730
type: LocalParameter
units: 756574
value: -999999.0

764122
type: SpeciesReference
stoichiometry: 1.0
species: 301511

302846
type: Reaction
reactant: 778364
name: beta-ketoacyl-acyl-carrier-protein_synthase_I
product: 778424
reversible: false
kinetic law: 778436
notes: Abbreviation: R_3OAS180_ap EC Number: 2.3.1.41 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M[m] alACP[ap] + M_palmACP[ap] --> M_3ooctdACP[ap] + M_ACP[ap] + M[c] o2[ap] genes: LOCUS:PFB0505c# LOCUS:PFF1275c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFF1275c)
product: 778400
product: 778412
reactant: 778376
fast: false
reactant: 778388

778364
type: SpeciesReference
stoichiometry: 1.0
species: 300909

778424
type: SpeciesReference
stoichiometry: 1.0
species: 300512

307115
type: LocalParameter
units: 756622
value: 0.0

307113
type: LocalParameter
value: 0.0

307112
type: LocalParameter
units: 756574
value: 999999.0

307110
type: LocalParameter
units: 756574
value: 0.0

778400
type: SpeciesReference
stoichiometry: 1.0
species: 300184

778412
type: SpeciesReference
stoichiometry: 1.0
species: 300270

778376
type: SpeciesReference
stoichiometry: 1.0
species: 301062

778388
type: SpeciesReference
stoichiometry: 1.0
species: 301292

304304
type: Reaction
kinetic law: 810605
name: R_THRGLYexR
reversible: true
product: 810593
notes: Abbreviation: R_THRGLYexR EC Number: SUBSYSTEM: Transport_aa Equation: M_gly[c] + M_thr_L[e] <==> M_gly[e] + M_thr_L[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
reactant: 810557
product: 810581
reactant: 810569
fast: false

309792
type: LocalParameter
units: 756622
value: 0.0

309791
type: LocalParameter
value: 0.0

309789
type: LocalParameter
units: 756574
value: 999999.0

309788
type: LocalParameter
units: 756574
value: -999999.0

810593
type: SpeciesReference
stoichiometry: 1.0
species: 301619

810557
type: SpeciesReference
stoichiometry: 1.0
species: 300841

810581
type: SpeciesReference
stoichiometry: 1.0
species: 300843

810569
type: SpeciesReference
stoichiometry: 1.0
species: 301621

301751
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Xanthine_C5H4N4O2

303848
type: Reaction
name: purine-nucleoside_phosphorylase
product: 801514
fast: false
notes: Abbreviation: R_PUNP3 EC Number: 2.4.2.1 SUBSYSTEM: Nucleotides_PurineMetabolism ; AminoAcids_MetPolyamineMetabolism Equation: M_gsn[c] + M_pi[c] <==> M_gua[c] + M_r1p[c] genes: LOCUS:PFE0660c# proteins: GENE ASSOCIATION: (PFE0660c)
reactant: 801477
kinetic law: 801526
reactant: 801490
product: 801502
reversible: true

801514
type: SpeciesReference
stoichiometry: 1.0
species: 301509

801477
type: SpeciesReference
stoichiometry: 1.0
species: 300869

300869
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Guanosine_C10H13N5O5

308956
type: LocalParameter
units: 756622
value: 0.0

308955
type: LocalParameter
value: 0.0

308953
type: LocalParameter
units: 756574
value: 999999.0

308952
type: LocalParameter
units: 756574
value: -999999.0

801490
type: SpeciesReference
stoichiometry: 1.0
species: 301390

801502
type: SpeciesReference
stoichiometry: 1.0
species: 300889

304637
type: Reaction
kinetic law: 815363
product: 815351
reactant: 815339
notes: Abbreviation: R_CO2tmt EC Number: SUBSYSTEM: Transport_MT Equation: M[c] o2[m] <==> M[c] o2[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_CO2tmt

310403
type: LocalParameter
units: 756622
value: 0.0

310401
type: LocalParameter
value: 0.0

310400
type: LocalParameter
units: 756574
value: 999999.0

310398
type: LocalParameter
units: 756574
value: -999999.0

815351
type: SpeciesReference
stoichiometry: 1.0
species: 300514

815339
type: SpeciesReference
stoichiometry: 1.0
species: 300518

302962
type: Reaction
product: 781611
product: 781647
fast: false
name: fatty-acid_synthase
product: 781623
reactant: 781575
reactant: 781587
reactant: 781551
product: 781599
product: 781635
reactant: 781563
notes: Abbreviation: R_FAS240_L_ap EC Number: 2.3.1.85 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: (9.0) M_h[ap] + (3.0) M[m] alcoa[ap] + (6.0) M_nadph[ap] + M_ocdca[ap] --> (3.0) M[c] o2[ap] + (3.0) M[c] oa[ap] + (3.0) M_h2o[ap] + (6.0) M_nadp[ap] + M_ttc[ap] genes: LOCUS:PFB0505c# LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFI1125c)
reversible: false
kinetic law: 781659

781611
type: SpeciesReference
stoichiometry: 3.0
species: 300520

781647
type: SpeciesReference
stoichiometry: 1.0
species: 301693

301693
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: tetracosanoate_n_C240_C24H47O2

781623
type: SpeciesReference
stoichiometry: 3.0
species: 300901

781575
type: SpeciesReference
stoichiometry: 6.0
species: 301146

781587
type: SpeciesReference
stoichiometry: 1.0
species: 301212

781551
type: SpeciesReference
stoichiometry: 9.0
species: 300909

781599
type: SpeciesReference
stoichiometry: 3.0
species: 300512

781635
type: SpeciesReference
stoichiometry: 6.0
species: 301140

781563
type: SpeciesReference
stoichiometry: 3.0
species: 301070

307313
type: LocalParameter
units: 756622
value: 0.0

307311
type: LocalParameter
value: 0.0

307310
type: LocalParameter
units: 756574
value: 999999.0

307308
type: LocalParameter
units: 756574
value: 0.0

302109
type: Reaction
product: 761468
name: Alanine-tRNA_ligase
product: 761456
reversible: false
product: 761480
notes: Abbreviation: R_ALATRS EC Number: 6.1.1.7 SUBSYSTEM: AminoAcids_tRNA Equation: M_ala_L[c] + M_atp[c] + M_trnaala[c] --> M_alatrna[c] + M_amp[c] + M_ppi[c] genes: LOCUS:PF13_0354# proteins: GENE ASSOCIATION: (PF13_0354)
reactant: 761444
kinetic law: 761492
reactant: 761432
fast: false
reactant: 761420

761468
type: SpeciesReference
stoichiometry: 1.0
species: 300370

761456
type: SpeciesReference
stoichiometry: 1.0
species: 300358

761480
type: SpeciesReference
stoichiometry: 1.0
species: 301416

761444
type: SpeciesReference
stoichiometry: 1.0
species: 301645

305286
type: LocalParameter
units: 756622
value: 0.0

305283
type: LocalParameter
value: 0.0

305280
type: LocalParameter
units: 756574
value: 999999.0

305277
type: LocalParameter
units: 756574
value: 0.0

761432
type: SpeciesReference
stoichiometry: 1.0
species: 300414

761420
type: SpeciesReference
stoichiometry: 1.0
species: 300352

300352
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Alanine_C3H7NO2

303533
type: Reaction
reactant: 794793
product: 794829
notes: Abbreviation: R_PGPP161pp EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp161[c] --> M_pg161[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
product: 794817
name: phosphatidylglycerophosphatase
fast: false
reactant: 794805
reversible: false
kinetic law: 794841

794793
type: SpeciesReference
stoichiometry: 1.0
species: 300903

794829
type: SpeciesReference
stoichiometry: 1.0
species: 301390

794817
type: SpeciesReference
stoichiometry: 1.0
species: 301354

794805
type: SpeciesReference
stoichiometry: 1.0
species: 301368

301368
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_dihexadec_9_enoyl_n_C161_C38H69O13P2

308346
type: LocalParameter
units: 756622
value: 0.0

308345
type: LocalParameter
value: 0.0

308343
type: LocalParameter
units: 756574
value: 999999.0

308342
type: LocalParameter
units: 756574
value: 0.0

303176
type: Reaction
reactant: 786283
notes: Abbreviation: R_DASYN161 EC Number: 2.7.7.41 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] tp[c] + M_h[c] + M_pa161[c] --> M[c] dpdhdec9eg[c] + M_ppi[c] genes: LOCUS:PF14_0097# proteins: GENE ASSOCIATION: (PF14_0097)
reversible: false
fast: false
product: 786319
kinetic law: 786343
product: 786331
name: phosphatidate_cytidylyltransferase
reactant: 786307
reactant: 786295

786283
type: SpeciesReference
stoichiometry: 1.0
species: 300536

786319
type: SpeciesReference
stoichiometry: 1.0
species: 300448

307688
type: LocalParameter
units: 756622
value: 0.0

307686
type: LocalParameter
value: 0.0

307685
type: LocalParameter
units: 756574
value: 999999.0

307683
type: LocalParameter
units: 756574
value: 0.0

786331
type: SpeciesReference
stoichiometry: 1.0
species: 301416

786307
type: SpeciesReference
stoichiometry: 1.0
species: 301280

786295
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302503
type: Reaction
kinetic law: 772151
product: 772139
reactant: 772127
notes: Abbreviation: R_EX_folate4 EC Number: SUBSYSTEM: Exchange Equation: [e] : M_4abz <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_folate4

306509
type: LocalParameter
units: 756622
value: 0.0

306508
type: LocalParameter
value: 0.0

306507
type: LocalParameter
units: 756574
value: 999999.0

306505
type: LocalParameter
units: 756574
value: -999999.0

772139
type: SpeciesReference
stoichiometry: 1.0
species: 301832

301832
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 4_Aminobenzoate_C7H6NO2

772127
type: SpeciesReference
stoichiometry: 1.0
species: 300206

300206
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 4_Aminobenzoate_C7H6NO2

299940
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: 1_2_Diacyl_sn_glycerol_didodecanoyl_n_C120_C27H52O5

300398
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Asparagine_C4H8N2O3

302303
type: Reaction
notes: Abbreviation: R_FCLT_ap EC Number: 4.99.1.1 SUBSYSTEM: Cofactors_PorphyrinMetabolism Equation: M_fe2[ap] + M_ppp9[ap] --> (2.0) M_h[ap] + M_pheme[ap] genes: LOCUS:MAL13P1_326# proteins: GENE ASSOCIATION: (MAL13P1_326)
reactant: 767942
fast: false
reversible: false
name: ferrochelatase
kinetic law: 767991
product: 767979
reactant: 767954
product: 767966

767942
type: SpeciesReference
stoichiometry: 1.0
species: 300721

306119
type: LocalParameter
units: 756622
value: 0.0

306118
type: LocalParameter
value: 0.0

306117
type: LocalParameter
units: 756574
value: 999999.0

306115
type: LocalParameter
units: 756574
value: 0.0

767979
type: SpeciesReference
stoichiometry: 1.0
species: 301378

767954
type: SpeciesReference
stoichiometry: 1.0
species: 301420

301420
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Protoporphyrin_C34H32N4O4

767966
type: SpeciesReference
stoichiometry: 2.0
species: 300909

303494
type: Reaction
name: CDP-diacylglycerol-glycerol-3-phosphate_3-phosphatidyltransferase
fast: false
product: 794008
reversible: false
reactant: 793960
notes: Abbreviation: R_PGSA160 EC Number: 2.7.8.5 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] dpdhdecg[c] + M_glyc3p[c] --> M[c] mp[c] + M_h[c] + M_pgp160[c] genes: LOCUS:MAL8P1_58# proteins: GENE ASSOCIATION: (MAL8P1_58)
reactant: 793972
kinetic law: 794020
product: 793996
product: 793984

794008
type: SpeciesReference
stoichiometry: 1.0
species: 301366

301366
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerophosphate_dihexadecanoyl_n_C160_C38H73O13P2

793960
type: SpeciesReference
stoichiometry: 1.0
species: 300452

793972
type: SpeciesReference
stoichiometry: 1.0
species: 300851

308275
type: LocalParameter
units: 756622
value: 0.0

308273
type: LocalParameter
value: 0.0

308272
type: LocalParameter
units: 756574
value: 999999.0

308270
type: LocalParameter
units: 756574
value: 0.0

793996
type: SpeciesReference
stoichiometry: 1.0
species: 300911

793984
type: SpeciesReference
stoichiometry: 1.0
species: 300510

300012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_octadec_11_enoyl_sn_glycerol_3_phosphate_C21H39O7P1

301805
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyadenosine_C10H13N5O3

304397
type: Reaction
kinetic law: 811836
product: 811824
reactant: 811812
notes: Abbreviation: R_COA3tap EC Number: SUBSYSTEM: Transport_AP Equation: M_5aop[ap] <==> M_5aop[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_COA3tap

309963
type: LocalParameter
units: 756622
value: 0.0

309961
type: LocalParameter
value: 0.0

309960
type: LocalParameter
units: 756574
value: 999999.0

309958
type: LocalParameter
units: 756574
value: -999999.0

811824
type: SpeciesReference
stoichiometry: 1.0
species: 300244

811812
type: SpeciesReference
stoichiometry: 1.0
species: 300242

302380
type: Reaction
kinetic law: 770096
product: 770084
reactant: 770072
reactant: 770060
notes: Abbreviation: R_OMMBLHX_mt EC Number: SUBSYSTEM: Cofactors_UbiquinoneMetabolism Equation: M_2ommbl[m] + (0.5) M_o2[m] --> M_2omhmbl[m] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: false
name: R_OMMBLHX_mt

306284
type: LocalParameter
units: 756622
value: 0.0

306283
type: LocalParameter
value: 0.0

306282
type: LocalParameter
units: 756574
value: 999999.0

306280
type: LocalParameter
units: 756574
value: 0.0

770084
type: SpeciesReference
stoichiometry: 1.0
species: 300088

770072
type: SpeciesReference
stoichiometry: 0.5
species: 301190

770060
type: SpeciesReference
stoichiometry: 1.0
species: 300090

300150
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 3_Methyl_2_oxobutanoate_C5H7O3

304142
type: Reaction
reversible: true
fast: false
notes: Abbreviation: R_L_LACt2r EC Number: SUBSYSTEM: Transport Equation: M_h[e] + M_lac_L[e] <==> M_h[c] + M_lac_L[c] genes: proteins: GENE ASSOCIATION:
product: 807659
kinetic law: 807683
name: R_L_LACt2r
product: 807671
reactant: 807647
reactant: 807634

807659
type: SpeciesReference
stoichiometry: 1.0
species: 300911

309495
type: LocalParameter
units: 756622
value: 0.0

309494
type: LocalParameter
value: 0.0

309492
type: LocalParameter
units: 756574
value: 999999.0

309491
type: LocalParameter
units: 756574
value: -999999.0

807671
type: SpeciesReference
stoichiometry: 1.0
species: 301030

301030
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Lactate_C3H5O3

807647
type: SpeciesReference
stoichiometry: 1.0
species: 301032

301032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Lactate_C3H5O3

807634
type: SpeciesReference
stoichiometry: 1.0
species: 300913

300813
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Glucose_C6H12O6

304475
type: Reaction
kinetic law: 812949
product: 812937
reactant: 812924
notes: Abbreviation: R_DADNt4 EC Number: SUBSYSTEM: Transport_base Equation: M_dad_2[e] <==> M_dad_2[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
fast: false
reversible: true
name: R_DADNt4

310106
type: LocalParameter
units: 756622
value: 0.0

310104
type: LocalParameter
value: 0.0

310103
type: LocalParameter
units: 756574
value: 999999.0

310101
type: LocalParameter
units: 756574
value: -999999.0

812937
type: SpeciesReference
stoichiometry: 1.0
species: 300550

812924
type: SpeciesReference
stoichiometry: 1.0
species: 300552

300552
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyadenosine_C10H13N5O3

302800
type: Reaction
product: 777168
product: 777156
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
reactant: 777120
kinetic law: 777180
reactant: 777132
fast: false
notes: Abbreviation: R_3OAR140_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3omrsACP[ap] + M_h[ap] + M_nadph[ap] <==> M_3hmrsACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reversible: true
reactant: 777144

777168
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777156
type: SpeciesReference
stoichiometry: 1.0
species: 300140

300140
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

777120
type: SpeciesReference
stoichiometry: 1.0
species: 300178

307033
type: LocalParameter
units: 756622
value: 0.0

307031
type: LocalParameter
value: 0.0

307030
type: LocalParameter
units: 756574
value: 999999.0

307029
type: LocalParameter
units: 756574
value: -999999.0

777132
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777144
type: SpeciesReference
stoichiometry: 1.0
species: 301146

300534
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: CTP_C9H12N3O14P3

301094
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D-myo-Inositol 1,3,4,5,6-pentakisphosphate_C6H7O21P5

300048
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoglycerol_n_C141_C20H38O9P1

304784
type: Reaction
reactant: 817875
reactant: 817779
reactant: 818019
reactant: 818104
reactant: 818043
product: 818128
reactant: 817863
reactant: 817694
reactant: 817959
fast: false
reactant: 818031
reactant: 817597
reactant: 817755
reactant: 817645
reactant: 817670
reactant: 817935
product: 818116
reactant: 817560
kinetic law: 818164
reactant: 817536
name: R_biomass
reactant: 817839
reactant: 817512
reactant: 817791
reactant: 817995
reversible: false
reactant: 818007
reactant: 817827
reactant: 817971
reactant: 817851
reactant: 817767
notes: Abbreviation: R_biomass EC Number: SUBSYSTEM: Equation: (2.23E-4) M_10fthf[c] + (2.23E-4) M_2ohph[m] + (0.1364) M_ala_L[c] + (2.23E-4) M_amet[c] + (0.1349) M_arg_L[c] + (0.6245) M_asn_L[c] + (0.2994) M_asp_L[c] + (60.01) M_atp[c] + (5.76E-4) M[c] oa[c] + (0.0437) M[c] tp[c] + (0.0674) M[c] ys_L[c] + (0.02721) M_datp[c] + (0.00655) M_dctp[c] + (0.00655) M_dgtp[c] + (0.02721) M_dttp[c] + (2.23E-4) M_fad[c] + (0.007106) M_fe2[c] + (0.007106) M_fe3[c] + (0.1353) M_gln_L[c] + (0.3505) M_glu_L[c] + (0.1827) M_gly[c] + (0.06241) M_gtp[c] + (54.462) M_h2o[c] + (0.1063) M_his_L[c] + (0.3566) M_ile_L[c] + (0.3405) M_leu_L[c] + (0.5124) M_lys_L[c] + (0.1019) M[m] et_L[c] + (2.23E-4) M[m] lthf[c] + (0.001831) M_nad[c] + (4.47E-4) M_nadp[c] + (0.011843) M_nh4[c] + (0.12342) M_pe[c] + (0.1481) M_pc[c] + (0.0519) M[c] hsterol[e] + (0.1823) M_phe_L[c] + (2.23E-4) M_pheme[m] + (0.1085) M_pro_L[c] + (2.23E-4) M_pydx5p[c] + (2.23E-4) M_ribflv[c] + (0.3055) M_ser_L[c] + (0.003948) M_so4[c] + (2.23E-4) M_thf[c] + (2.23E-4) M_thmpp[c] + (0.2045) M_thr_L[c] + (0.02095) M_trp_L[c] + (0.1379) M_tyr_L[c] + (0.2219) M_utp[c] + (0.2030) M_val_L[c] + (0.0479) M_ptrc[c] + (0.00959) M_spmd[c] --> (59.81) M_adp[c] + (59.81) M_h[c] + (59.806) M_pi[c] + (0.7739) M_ppi[c] genes: proteins: GENE ASSOCIATION:
reactant: 817657
reactant: 817682
reactant: 817500
reactant: 817947
reactant: 817803
reactant: 817572
reactant: 817719
reactant: 817609
reactant: 817585
reactant: 817743
reactant: 818079
reactant: 817633
reactant: 817923
reactant: 817887
product: 818140
reactant: 817731
product: 818152
reactant: 817621
reactant: 818055
reactant: 817983
reactant: 817815
reactant: 817548
reactant: 817899
reactant: 817911
reactant: 817707
reactant: 817524
reactant: 818092
reactant: 818067

817875
type: SpeciesReference
stoichiometry: 0.011843
species: 301160

817779
type: SpeciesReference
stoichiometry: 0.1063
species: 300965

300965
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Histidine_C6H9N3O2

818019
type: SpeciesReference
stoichiometry: 2.23E-4
species: 301617

818104
type: SpeciesReference
stoichiometry: 0.00959
species: 301553

818043
type: SpeciesReference
stoichiometry: 0.02095
species: 301687

301687
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Tryptophan_C11H12N2O2

818128
type: SpeciesReference
stoichiometry: 59.81
species: 300911

817863
type: SpeciesReference
stoichiometry: 4.47E-4
species: 301142

817694
type: SpeciesReference
stoichiometry: 0.007106
species: 300723

817959
type: SpeciesReference
stoichiometry: 2.23E-4
species: 301483

818031
type: SpeciesReference
stoichiometry: 0.2045
species: 301619

817597
type: SpeciesReference
stoichiometry: 5.76E-4
species: 300522

817755
type: SpeciesReference
stoichiometry: 0.06241
species: 300885

817645
type: SpeciesReference
stoichiometry: 0.00655
species: 300584

300584
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dCTP_C9H12N3O13P3

817670
type: SpeciesReference
stoichiometry: 0.02721
species: 300678

817935
type: SpeciesReference
stoichiometry: 2.23E-4
species: 301382

818116
type: SpeciesReference
stoichiometry: 59.81
species: 300332

817560
type: SpeciesReference
stoichiometry: 0.6245
species: 300398

310672
type: LocalParameter
units: 756622
value: 0.0

310671
type: LocalParameter
value: 1.0

310669
type: LocalParameter
units: 756574
value: 999999.0

310668
type: LocalParameter
units: 756574
value: 0.0

817536
type: SpeciesReference
stoichiometry: 2.23E-4
species: 300360

817839
type: SpeciesReference
stoichiometry: 2.23E-4
species: 301112

817512
type: SpeciesReference
stoichiometry: 2.23E-4
species: 300084

817791
type: SpeciesReference
stoichiometry: 0.3566
species: 301000

817995
type: SpeciesReference
stoichiometry: 0.003948
species: 301545

818007
type: SpeciesReference
stoichiometry: 2.23E-4
species: 301605

817827
type: SpeciesReference
stoichiometry: 0.1019
species: 301084

817971
type: SpeciesReference
stoichiometry: 2.23E-4
species: 301513

301513
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Riboflavin_C17H20N4O6

817851
type: SpeciesReference
stoichiometry: 0.001831
species: 301130

817767
type: SpeciesReference
stoichiometry: 54.462
species: 300903

817657
type: SpeciesReference
stoichiometry: 0.00655
species: 300612

817682
type: SpeciesReference
stoichiometry: 2.23E-4
species: 300711

300711
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

817500
type: SpeciesReference
stoichiometry: 2.23E-4
species: 299936

817947
type: SpeciesReference
stoichiometry: 0.1085
species: 301434

817803
type: SpeciesReference
stoichiometry: 0.3405
species: 301036

817572
type: SpeciesReference
stoichiometry: 0.2994
species: 300404

817719
type: SpeciesReference
stoichiometry: 0.1353
species: 300819

817609
type: SpeciesReference
stoichiometry: 0.0437
species: 300536

817585
type: SpeciesReference
stoichiometry: 60.01
species: 300414

817743
type: SpeciesReference
stoichiometry: 0.1827
species: 300841

818079
type: SpeciesReference
stoichiometry: 0.203
species: 301743

817633
type: SpeciesReference
stoichiometry: 0.02721
species: 300562

817923
type: SpeciesReference
stoichiometry: 0.1823
species: 301374

817887
type: SpeciesReference
stoichiometry: 0.12342
species: 301334

818140
type: SpeciesReference
stoichiometry: 59.806
species: 301390

817731
type: SpeciesReference
stoichiometry: 0.3505
species: 300829

818152
type: SpeciesReference
stoichiometry: 0.7739
species: 301416

817621
type: SpeciesReference
stoichiometry: 0.0674
species: 300538

818055
type: SpeciesReference
stoichiometry: 0.1379
species: 301707

817983
type: SpeciesReference
stoichiometry: 0.3055
species: 301533

817815
type: SpeciesReference
stoichiometry: 0.5124
species: 301046

817548
type: SpeciesReference
stoichiometry: 0.1349
species: 300392

817899
type: SpeciesReference
stoichiometry: 0.1481
species: 301300

817911
type: SpeciesReference
stoichiometry: 0.0519
species: 300484

300484
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: holesterol_C27H46O

817707
type: SpeciesReference
stoichiometry: 0.007106
species: 300727

817524
type: SpeciesReference
stoichiometry: 0.1364
species: 300352

818092
type: SpeciesReference
stoichiometry: 0.0479
species: 301473

818067
type: SpeciesReference
stoichiometry: 0.2219
species: 301741

301984
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Xanthosine_C10H12N4O6

303602
type: Reaction
name: stearoyl-CoA_9-desaturase
reactant: 796395
reversible: false
product: 796431
product: 796407
kinetic law: 796443
notes: Abbreviation: R_DESAT18 EC Number: 1.14.19.1 SUBSYSTEM: Lipids_UtilizationPhospholipids Equation: M_h[c] + M_nadph[c] + M_o2[c] + M_stcoa[c] --> (2.0) M_h2o[c] + M_nadp[c] + M_odecoa[c] genes: LOCUS:PFE0555w# proteins: GENE ASSOCIATION: (PFE0555w)
product: 796419
reactant: 796383
fast: false
reactant: 796371
reactant: 796359

796395
type: SpeciesReference
stoichiometry: 1.0
species: 301559

796431
type: SpeciesReference
stoichiometry: 1.0
species: 301240

796407
type: SpeciesReference
stoichiometry: 2.0
species: 300903

308473
type: LocalParameter
units: 756622
value: 0.0

308471
type: LocalParameter
value: 0.0

308470
type: LocalParameter
units: 756574
value: 999999.0

308468
type: LocalParameter
units: 756574
value: 0.0

796419
type: SpeciesReference
stoichiometry: 1.0
species: 301142

796383
type: SpeciesReference
stoichiometry: 1.0
species: 301186

796371
type: SpeciesReference
stoichiometry: 1.0
species: 301148

796359
type: SpeciesReference
stoichiometry: 1.0
species: 300911

303245
type: Reaction
kinetic law: 787918
notes: Abbreviation: R_GPDDA2 EC Number: 3.1.4.46 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_g3pe[c] + M_h2o[c] --> M[e] tha[c] + M_glyc3p[c] + M_h[c] genes: LOCUS:PF14_0060# proteins: GENE ASSOCIATION: (PF14_0060)
reversible: false
reactant: 787869
product: 787893
name: glycerophosphodiester_phosphodiesterase
product: 787881
reactant: 787857
product: 787906
fast: false

307813
type: LocalParameter
units: 756622
value: 0.0

307811
type: LocalParameter
value: 0.0

307810
type: LocalParameter
units: 756574
value: 999999.0

307808
type: LocalParameter
units: 756574
value: 0.0

787869
type: SpeciesReference
stoichiometry: 1.0
species: 300903

787893
type: SpeciesReference
stoichiometry: 1.0
species: 300851

787881
type: SpeciesReference
stoichiometry: 1.0
species: 300701

300701
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Ethanolamine_C2H8NO

787857
type: SpeciesReference
stoichiometry: 1.0
species: 300775

787906
type: SpeciesReference
stoichiometry: 1.0
species: 300911

301818
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyinosine_C10H12N4O4

302099
type: Reaction
fast: false
name: Tryptophan-tRNA_ligase
product: 761083
reactant: 761059
reactant: 761046
reversible: false
product: 761095
kinetic law: 761107
notes: Abbreviation: R_TRPTRS EC Number: 6.1.1.2 SUBSYSTEM: AminoAcids_PheTyrMetabolism Equation: M_atp[c] + M_trnatrp[c] + M_trp_L[c] --> M_amp[c] + M_ppi[c] + M_trptrna[c] genes: LOCUS:PF13_0205# LOCUS:PFL2485c# proteins: GENE ASSOCIATION: (PF13_0205) or (PFL2485c)
reactant: 761034
product: 761071

761083
type: SpeciesReference
stoichiometry: 1.0
species: 301416

761059
type: SpeciesReference
stoichiometry: 1.0
species: 301687

761046
type: SpeciesReference
stoichiometry: 1.0
species: 301681

301681
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Trp_R

761095
type: SpeciesReference
stoichiometry: 1.0
species: 301691

301691
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Tryptophanyl_tRNA_Trp_C11H11N2OR

305238
type: LocalParameter
units: 756622
value: 0.0

305235
type: LocalParameter
value: 0.0

305232
type: LocalParameter
units: 756574
value: 999999.0

305231
type: LocalParameter
units: 756574
value: 0.0

761034
type: SpeciesReference
stoichiometry: 1.0
species: 300414

761071
type: SpeciesReference
stoichiometry: 1.0
species: 300370

303716
type: Reaction
product: 798787
product: 798774
reversible: false
notes: Abbreviation: R_AP4AH1 EC Number: 3.6.1.17 SUBSYSTEM: Nucleotides_PyrimidineMetabolism ; Nucleotides_PurineMetabolism Equation: M[ap] 4a[c] + M_h2o[c] --> M_amp[c] + M_atp[c] + (2.0) M_h[c] genes: LOCUS:PFE1035c# proteins: GENE ASSOCIATION: (PFE1035c)
kinetic law: 798799
fast: false
reactant: 798738
product: 798762
name: bis(5'-nucleosyl)-tetraphosphatase_(asymmetrical)
reactant: 798750

798787
type: SpeciesReference
stoichiometry: 2.0
species: 300911

798774
type: SpeciesReference
stoichiometry: 1.0
species: 300414

308714
type: LocalParameter
units: 756622
value: 0.0

308713
type: LocalParameter
value: 0.0

308711
type: LocalParameter
units: 756574
value: 999999.0

308710
type: LocalParameter
units: 756574
value: 0.0

798738
type: SpeciesReference
stoichiometry: 1.0
species: 300374

300374
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

798762
type: SpeciesReference
stoichiometry: 1.0
species: 300370

798750
type: SpeciesReference
stoichiometry: 1.0
species: 300903

302141
type: Reaction
kinetic law: 762565
reactant: 762517
reactant: 762505
reversible: false
notes: Abbreviation: R_HEX1 EC Number: 2.7.1.1 SUBSYSTEM: Carbohydrates_Glycolysis ; Carbohydrates_MannoseFructoseMetabolism Equation: M_atp[c] + M_glc_D[c] --> M_adp[c] + M_g6p[c] + M_h[c] genes: LOCUS:PFF1155w# proteins: GENE ASSOCIATION: (PFF1155w)
product: 762529
fast: false
product: 762553
product: 762541
name: hexokinase

305442
type: LocalParameter
units: 756622
value: 0.0

305439
type: LocalParameter
value: 0.0

305436
type: LocalParameter
units: 756574
value: 999999.0

305433
type: LocalParameter
units: 756574
value: 0.0

762517
type: SpeciesReference
stoichiometry: 1.0
species: 300813

762505
type: SpeciesReference
stoichiometry: 1.0
species: 300414

762529
type: SpeciesReference
stoichiometry: 1.0
species: 300332

762553
type: SpeciesReference
stoichiometry: 1.0
species: 300911

762541
type: SpeciesReference
stoichiometry: 1.0
species: 300783

300974
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Hydroxymethylbilane_C40H38N4O17

300959
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: hexacosanoate_n_C260_C26H51O2

302650
type: Reaction
kinetic law: 774015
product: 774003
reactant: 773991
notes: Abbreviation: R_EX_phosphatidyl2 EC Number: SUBSYSTEM: Exchange Equation: [e] : M_pc <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_phosphatidyl2

306772
type: LocalParameter
units: 756622
value: 0.0

306770
type: LocalParameter
value: 0.0

306769
type: LocalParameter
units: 756574
value: 999999.0

306768
type: LocalParameter
units: 756574
value: -999999.0

774003
type: SpeciesReference
stoichiometry: 1.0
species: 301934

773991
type: SpeciesReference
stoichiometry: 1.0
species: 301302

303122
type: Reaction
product: 785044
name: R_MECDPDH2_ap
reactant: 785020
product: 785056
fast: false
reactant: 785008
notes: Abbreviation: R_MECDPDH2_ap EC Number: 1.17.7.1 SUBSYSTEM: Lipids_IsoprenoidsMetabolism Equation: M_2mecdp[ap] + M_nadph[ap] --> M_h2mb4p[ap] + M_h2o[ap] + M_nadp[ap] genes: LOCUS:PF10_0221# proteins: GENE ASSOCIATION: (PF10_0221)
product: 785032
reversible: false
kinetic law: 785069

785044
type: SpeciesReference
stoichiometry: 1.0
species: 300901

785020
type: SpeciesReference
stoichiometry: 1.0
species: 301146

785056
type: SpeciesReference
stoichiometry: 1.0
species: 301140

785008
type: SpeciesReference
stoichiometry: 1.0
species: 300078

300078
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 2_C_methyl_D_erythritol_2_4_cyclodiphosphate_C5H10O9P2

785032
type: SpeciesReference
stoichiometry: 1.0
species: 300893

307591
type: LocalParameter
units: 756622
value: 0.0

307589
type: LocalParameter
value: 0.0

307588
type: LocalParameter
units: 756574
value: 999999.0

307587
type: LocalParameter
units: 756574
value: 0.0

303563
type: Reaction
reactant: 795468
reversible: false
reactant: 795456
reactant: 795444
product: 795492
name: UTP-glucose-1-phosphate_uridylyltransferase
product: 795480
kinetic law: 795504
fast: false
notes: Abbreviation: R_GALUi EC Number: 2.7.7.9 SUBSYSTEM: Lipids_SphingomyelinCeramideMetabolism Equation: M_g1p[c] + M_h[c] + M_utp[c] --> M_ppi[c] + M_udpg[c] genes: LOCUS:MAL13P1_218# proteins: GENE ASSOCIATION: (MAL13P1_218)

795468
type: SpeciesReference
stoichiometry: 1.0
species: 301741

795456
type: SpeciesReference
stoichiometry: 1.0
species: 300911

795444
type: SpeciesReference
stoichiometry: 1.0
species: 300763

795492
type: SpeciesReference
stoichiometry: 1.0
species: 301721

301721
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: UDPglucose_C15H22N2O17P2

795480
type: SpeciesReference
stoichiometry: 1.0
species: 301416

308401
type: LocalParameter
units: 756622
value: 0.0

308400
type: LocalParameter
value: 0.0

308398
type: LocalParameter
units: 756574
value: 999999.0

308397
type: LocalParameter
units: 756574
value: 0.0

301537
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Seryl_tRNA_Ser_C3H6NO2R

304169
type: Reaction
kinetic law: 808084
product: 808071
reactant: 808059
notes: Abbreviation: R_O2St EC Number: SUBSYSTEM: Transport Equation: M_o2s[c] <==> M_o2s[e] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_O2St

309545
type: LocalParameter
units: 756622
value: 0.0

309543
type: LocalParameter
value: 0.0

309542
type: LocalParameter
units: 756574
value: 999999.0

309540
type: LocalParameter
units: 756574
value: -999999.0

808071
type: SpeciesReference
stoichiometry: 1.0
species: 301194

808059
type: SpeciesReference
stoichiometry: 1.0
species: 301192

302808
type: Reaction
reactant: 777336
notes: Abbreviation: R_3OAR161_ap EC Number: 1.1.1.100 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3ocpalm9eACP[ap] + M_h[ap] + M_nadph[ap] --> M_3hcpalm9eACP[ap] + M_nadp[ap] genes: LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFI1125c)
reversible: false
name: 3-oxoacyl-[acyl-carrier-protein]_reductase
kinetic law: 777397
product: 777372
fast: false
product: 777385
reactant: 777348
reactant: 777360

777336
type: SpeciesReference
stoichiometry: 1.0
species: 300160

300160
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

307048
type: LocalParameter
units: 756622
value: 0.0

307046
type: LocalParameter
value: 0.0

307045
type: LocalParameter
units: 756574
value: 999999.0

307044
type: LocalParameter
units: 756574
value: 0.0

777372
type: SpeciesReference
stoichiometry: 1.0
species: 300128

777385
type: SpeciesReference
stoichiometry: 1.0
species: 301140

777348
type: SpeciesReference
stoichiometry: 1.0
species: 300909

777360
type: SpeciesReference
stoichiometry: 1.0
species: 301146

300498
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: cardiolipin_tetratetradec_7_enoyl_n_C141_C65H116O17P2

300905
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: H2O_H2O

304544
type: Reaction
kinetic law: 813861
product: 813849
reactant: 813837
notes: Abbreviation: R_EX_nicotinamide2 EC Number: SUBSYSTEM: Transport_cofactor Equation: M_ncam[e] <==> M_ncam[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_nicotinamide2

310232
type: LocalParameter
units: 756622
value: 0.0

310231
type: LocalParameter
value: 0.0

310229
type: LocalParameter
units: 756574
value: 999999.0

310228
type: LocalParameter
units: 756574
value: 0.0

813849
type: SpeciesReference
stoichiometry: 1.0
species: 301154

813837
type: SpeciesReference
stoichiometry: 1.0
species: 301156

301156
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nicotinamide_C6H6N2O

300460
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

302905
type: Reaction
product: 779839
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
reversible: false
reactant: 779802
product: 779851
reactant: 779827
kinetic law: 779863
reactant: 779814
notes: Abbreviation: R_EAR181x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_t3c11vaceACP[ap] --> M_nad[ap] + M_octeACP[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
fast: false

779839
type: SpeciesReference
stoichiometry: 1.0
species: 301128

779802
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779851
type: SpeciesReference
stoichiometry: 1.0
species: 301236

301236
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779827
type: SpeciesReference
stoichiometry: 1.0
species: 301571

301571
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

307215
type: LocalParameter
units: 756622
value: 0.0

307213
type: LocalParameter
value: 0.0

307212
type: LocalParameter
units: 756574
value: 999999.0

307211
type: LocalParameter
units: 756574
value: 0.0

779814
type: SpeciesReference
stoichiometry: 1.0
species: 301134

300729
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Ferricytochrome_c_C42H52FeN8O6S2

303440
type: Reaction
reversible: false
product: 792675
name: phospholipase_A2
reactant: 792651
fast: false
product: 792687
product: 792699
reactant: 792663
kinetic law: 792711
notes: Abbreviation: R_PLIPA2G140pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pg140[c] --> M_1agpg140[c] + M_h[c] + M_ttdca[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)

792675
type: SpeciesReference
stoichiometry: 1.0
species: 299986

792651
type: SpeciesReference
stoichiometry: 1.0
species: 300903

792687
type: SpeciesReference
stoichiometry: 1.0
species: 300911

792699
type: SpeciesReference
stoichiometry: 1.0
species: 301697

792663
type: SpeciesReference
stoichiometry: 1.0
species: 301348

308176
type: LocalParameter
units: 756622
value: 0.0

308174
type: LocalParameter
value: 0.0

308173
type: LocalParameter
units: 756574
value: 999999.0

308171
type: LocalParameter
units: 756574
value: 0.0

303083
type: Reaction
notes: Abbreviation: R_MI145PP EC Number: 3.1.3.56 SUBSYSTEM: Lipids_InositolPhosphateMetabolism Equation: M_h2o[c] + M[m] i145p[c] --> M[m] i14p[c] + M_pi[c] genes: LOCUS:PF07_0024# LOCUS:PF13_0285# proteins: GENE ASSOCIATION: (PF07_0024) or (PF13_0285)
fast: false
product: 784151
reactant: 784127
reactant: 784115
reversible: false
kinetic law: 784163
name: inositol-polyphosphate_5-phosphatase
product: 784139

784151
type: SpeciesReference
stoichiometry: 1.0
species: 301390

784127
type: SpeciesReference
stoichiometry: 1.0
species: 301102

784115
type: SpeciesReference
stoichiometry: 1.0
species: 300903

307523
type: LocalParameter
units: 756622
value: 0.0

307522
type: LocalParameter
value: 0.0

307520
type: LocalParameter
units: 756574
value: 999999.0

307519
type: LocalParameter
units: 756574
value: 0.0

784139
type: SpeciesReference
stoichiometry: 1.0
species: 301104

301104
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D-myo-Inositol 1,4-bisphosphate_C6H10O12P2

302035
type: Reaction
reversible: false
reactant: 758667
reactant: 758642
fast: false
product: 758679
product: 758703
notes: Abbreviation: R_SERTRS2 EC Number: 6.1.1.11 SUBSYSTEM: AminoAcids_SelenocysteineMetabolism ; AminoAcids_GlySerMetabolism Equation: M_atp[c] + M_ser_L[c] + M_trnasecys[c] --> M_amp[c] + M_ppi[c] + M_sertrna_sec_[c] genes: LOCUS:PF07_0073# LOCUS:PFL0770w# proteins: GENE ASSOCIATION: (PF07_0073) or (PFL0770w)
reactant: 758654
product: 758691
name: Serine-tRNA_ligase
kinetic law: 758715

758667
type: SpeciesReference
stoichiometry: 1.0
species: 301675

758642
type: SpeciesReference
stoichiometry: 1.0
species: 300414

758679
type: SpeciesReference
stoichiometry: 1.0
species: 300370

758703
type: SpeciesReference
stoichiometry: 1.0
species: 301539

301539
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Seryl_tRNA_Sec_C3H6NO2R

758654
type: SpeciesReference
stoichiometry: 1.0
species: 301533

758691
type: SpeciesReference
stoichiometry: 1.0
species: 301416

304976
type: LocalParameter
units: 756622
value: 0.0

304973
type: LocalParameter
value: 0.0

304970
type: LocalParameter
units: 756574
value: 999999.0

304969
type: LocalParameter
units: 756574
value: 0.0

304343
type: Reaction
kinetic law: 811174
product: 811162
reactant: 811150
notes: Abbreviation: R_PA160tap EC Number: SUBSYSTEM: Transport_AP Equation: M_pa160[ap] <==> M_pa160[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PA160tap

309864
type: LocalParameter
units: 756622
value: 0.0

309862
type: LocalParameter
value: 0.0

309861
type: LocalParameter
units: 756574
value: 999999.0

309859
type: LocalParameter
units: 756574
value: -999999.0

811162
type: SpeciesReference
stoichiometry: 1.0
species: 301276

811150
type: SpeciesReference
stoichiometry: 1.0
species: 301274

301274
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_2_dihexadecanoyl_sn_glycerol_3_phosphate_C35H67O8P1

300066
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Deoxy_D_ribose_5_phosphate_C5H9O7P

303314
type: Reaction
reactant: 789607
product: 789655
reversible: false
product: 789631
name: lysophospholipase
product: 789643
notes: Abbreviation: R_LPLIPAL1G141pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpg141[c] + M_h2o[c] --> M_g3pg[c] + M_h[c] + M_ttdcea[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 789619
kinetic law: 789667
fast: false

789607
type: SpeciesReference
stoichiometry: 1.0
species: 299988

789655
type: SpeciesReference
stoichiometry: 1.0
species: 301703

789631
type: SpeciesReference
stoichiometry: 1.0
species: 300777

789643
type: SpeciesReference
stoichiometry: 1.0
species: 300911

789619
type: SpeciesReference
stoichiometry: 1.0
species: 300903

307945
type: LocalParameter
units: 756622
value: 0.0

307943
type: LocalParameter
value: 0.0

307942
type: LocalParameter
units: 756574
value: 999999.0

307940
type: LocalParameter
units: 756574
value: 0.0

303017
type: Reaction
kinetic law: 782857
product: 782844
product: 782831
reactant: 782819
notes: Abbreviation: R_3HAD180_ap EC Number: 4.2.1.61 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3hoctaACP[ap] --> M_h2o[ap] + M_toctd2eACP[ap] genes: LOCUS:PF13_0128# proteins: GENE ASSOCIATION: (PF13_0128)
fast: false
reversible: false
name: 3-Hydroxypalmitoyl-[acyl-carrier-protein]_dehydratase

307411
type: LocalParameter
units: 756622
value: 0.0

307410
type: LocalParameter
value: 0.0

307408
type: LocalParameter
units: 756574
value: 999999.0

307407
type: LocalParameter
units: 756574
value: 0.0

782844
type: SpeciesReference
stoichiometry: 1.0
species: 301633

782831
type: SpeciesReference
stoichiometry: 1.0
species: 300901

782819
type: SpeciesReference
stoichiometry: 1.0
species: 300144

302543
type: Reaction
kinetic law: 772662
product: 772649
reactant: 772637
notes: Abbreviation: R_EX_gthrd_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_gthrd <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_gthrd_e_

306579
type: LocalParameter
units: 756622
value: 0.0

306578
type: LocalParameter
value: 0.0

306577
type: LocalParameter
units: 756574
value: 999999.0

306575
type: LocalParameter
units: 756574
value: -999999.0

772649
type: SpeciesReference
stoichiometry: 1.0
species: 301860

772637
type: SpeciesReference
stoichiometry: 1.0
species: 300881

300881
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Reduced_glutathione_C10H16N3O6S

301663
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Ile_R

300992
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hexanoyl_CoA_n_C60CoA_C27H42N7O17P3S

299980
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoethanolamine_n_C180_C23H48NO7P1

302677
type: Reaction
kinetic law: 774341
product: 774329
reactant: 774317
notes: Abbreviation: R_EX_so4_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_so4 <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_so4_e_

306818
type: LocalParameter
units: 756622
value: 0.0

306816
type: LocalParameter
value: 0.0

306815
type: LocalParameter
units: 756574
value: 999999.0

306814
type: LocalParameter
units: 756574
value: -999999.0

774329
type: SpeciesReference
stoichiometry: 1.0
species: 301952

774317
type: SpeciesReference
stoichiometry: 1.0
species: 301547

304193
type: Reaction
notes: Abbreviation: R_PYRt2r EC Number: SUBSYSTEM: Transport Equation: M_h[e] + M_pyr[e] <==> M_h[c] + M_pyr[c] genes: proteins: GENE ASSOCIATION:
reactant: 808434
reactant: 808422
product: 808446
kinetic law: 808471
reversible: true
fast: false
name: R_PYRt2r
product: 808458

808434
type: SpeciesReference
stoichiometry: 1.0
species: 301497

808422
type: SpeciesReference
stoichiometry: 1.0
species: 300913

808446
type: SpeciesReference
stoichiometry: 1.0
species: 300911

309589
type: LocalParameter
units: 756622
value: 0.0

309587
type: LocalParameter
value: 0.0

309586
type: LocalParameter
units: 756574
value: 999999.0

309584
type: LocalParameter
units: 756574
value: -999999.0

808458
type: SpeciesReference
stoichiometry: 1.0
species: 301495

304238
type: Reaction
kinetic law: 809280
product: 809256
reactant: 809244
name: R_ASNt2r
reactant: 809231
notes: Abbreviation: R_ASNt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_asn_L[e] + M_h[e] <==> M_asn_L[c] + M_h[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
reversible: true
product: 809268
fast: false

309671
type: LocalParameter
units: 756622
value: 0.0

309670
type: LocalParameter
value: 0.0

309668
type: LocalParameter
units: 756574
value: 999999.0

309667
type: LocalParameter
units: 756574
value: -999999.0

809256
type: SpeciesReference
stoichiometry: 1.0
species: 300398

809244
type: SpeciesReference
stoichiometry: 1.0
species: 300913

809231
type: SpeciesReference
stoichiometry: 1.0
species: 300400

809268
type: SpeciesReference
stoichiometry: 1.0
species: 300911

300190
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 3_Octaprenyl_4_hydroxybenzoate_C47H69O3

303824
type: Reaction
reactant: 800981
notes: Abbreviation: R_PDE2 EC Number: 3.1.4.17 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_35cdamp[c] + M_h2o[c] --> M_damp[c] + M_h[c] genes: LOCUS:MAL13P1_118# LOCUS:MAL13P1_119# LOCUS:PF14_0672# LOCUS:PFL0475w# proteins: GENE ASSOCIATION: (MAL13P1_118) or (MAL13P1_119) or (PF14_0672) or (PFL0475w)
name: 3',5'-cyclic-nucleotide_phosphodiesterase
fast: false
product: 801017
reactant: 800993
product: 801005
reversible: false
kinetic law: 801029

800981
type: SpeciesReference
stoichiometry: 1.0
species: 300108

801017
type: SpeciesReference
stoichiometry: 1.0
species: 300911

800993
type: SpeciesReference
stoichiometry: 1.0
species: 300903

801005
type: SpeciesReference
stoichiometry: 1.0
species: 300560

308912
type: LocalParameter
units: 756622
value: 0.0

308911
type: LocalParameter
value: 0.0

308909
type: LocalParameter
units: 756574
value: 999999.0

308908
type: LocalParameter
units: 756574
value: 0.0

300921
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Bicarbonate_CHO3

304613
type: Reaction
kinetic law: 815047
product: 815035
reactant: 815023
notes: Abbreviation: R_4HBZtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_4hbz[m] <==> M_4hbz[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_4HBZtmt

310359
type: LocalParameter
units: 756622
value: 0.0

310357
type: LocalParameter
value: 0.0

310356
type: LocalParameter
units: 756574
value: 999999.0

310354
type: LocalParameter
units: 756574
value: -999999.0

815035
type: SpeciesReference
stoichiometry: 1.0
species: 300222

815023
type: SpeciesReference
stoichiometry: 1.0
species: 300224

300224
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 4_Hydroxybenzoate_C7H5O3

303467
type: Reaction
product: 793356
name: R_CLPNH160pp
fast: false
reactant: 793308
reversible: false
kinetic law: 793368
reactant: 793320
product: 793344
notes: Abbreviation: R_CLPNH160pp EC Number: SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M[c] lpn160[c] + M_h2o[c] --> M_h[c] + M_pa160[c] + M_pg160[c] genes: proteins: GENE ASSOCIATION:
product: 793332

793356
type: SpeciesReference
stoichiometry: 1.0
species: 301352

793308
type: SpeciesReference
stoichiometry: 1.0
species: 300500

300500
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: cardiolipin_tetrahexadecanoyl_n_C160_C73H140O17P2

308225
type: LocalParameter
units: 756622
value: 0.0

308224
type: LocalParameter
value: 0.0

308222
type: LocalParameter
units: 756574
value: 999999.0

308221
type: LocalParameter
units: 756574
value: 0.0

793320
type: SpeciesReference
stoichiometry: 1.0
species: 300903

793344
type: SpeciesReference
stoichiometry: 1.0
species: 301276

793332
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302840
type: Reaction
kinetic law: 778267
reactant: 778219
product: 778243
reactant: 778207
name: beta-ketoacyl-acyl-carrier-protein_synthase_I
fast: false
product: 778231
product: 778255
reactant: 778195
notes: Abbreviation: R_3OAS160_ap EC Number: 2.3.1.41 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M[m] alACP[ap] + M[m] yrsACP[ap] --> M_3opalmACP[ap] + M_ACP[ap] + M[c] o2[ap] genes: LOCUS:PFB0505c# LOCUS:PFF1275c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFF1275c)
reversible: false

307103
type: LocalParameter
units: 756622
value: 0.0

307101
type: LocalParameter
value: 0.0

307100
type: LocalParameter
units: 756574
value: 999999.0

307099
type: LocalParameter
units: 756574
value: 0.0

778219
type: SpeciesReference
stoichiometry: 1.0
species: 301122

778243
type: SpeciesReference
stoichiometry: 1.0
species: 300270

778207
type: SpeciesReference
stoichiometry: 1.0
species: 301062

778231
type: SpeciesReference
stoichiometry: 1.0
species: 300188

778255
type: SpeciesReference
stoichiometry: 1.0
species: 300512

778195
type: SpeciesReference
stoichiometry: 1.0
species: 300909

300232
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 4_Methyl_2_oxopentanoate_C6H9O3

300747
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Formate_CH1O2

304727
type: Reaction
kinetic law: 816485
product: 816473
reactant: 816461
notes: Abbreviation: R_THFtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_thf[m] <==> M_thf[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_THFtmt

310568
type: LocalParameter
units: 756622
value: 0.0

310566
type: LocalParameter
value: 0.0

310565
type: LocalParameter
units: 756574
value: 999999.0

310563
type: LocalParameter
units: 756574
value: -999999.0

816473
type: SpeciesReference
stoichiometry: 1.0
species: 301605

816461
type: SpeciesReference
stoichiometry: 1.0
species: 301607

301607
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 5_6_7_8_Tetrahydrofolate_C19H21N7O6

303152
type: Reaction
reversible: false
product: 785738
notes: Abbreviation: R_DAGK160 EC Number: 2.7.1.107 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_12dgr160[c] + M_atp[c] --> M_adp[c] + M_h[c] + M_pa160[c] genes: LOCUS:PF14_0681# LOCUS:PFI1485c# proteins: GENE ASSOCIATION: (PF14_0681) or (PFI1485c)
reactant: 785714
fast: false
product: 785750
name: diacylglycerol_kinase
reactant: 785702
product: 785726
kinetic law: 785762

785738
type: SpeciesReference
stoichiometry: 1.0
species: 300911

785714
type: SpeciesReference
stoichiometry: 1.0
species: 300414

785750
type: SpeciesReference
stoichiometry: 1.0
species: 301276

785702
type: SpeciesReference
stoichiometry: 1.0
species: 299950

785726
type: SpeciesReference
stoichiometry: 1.0
species: 300332

307645
type: LocalParameter
units: 756622
value: 0.0

307643
type: LocalParameter
value: 0.0

307642
type: LocalParameter
units: 756574
value: 999999.0

307640
type: LocalParameter
units: 756574
value: 0.0

302103
type: Reaction
reactant: 761192
product: 761240
notes: Abbreviation: R_TYRTRS EC Number: 6.1.1.1 SUBSYSTEM: AminoAcids_PheTyrMetabolism Equation: M_atp[c] + M_trnatyr[c] + M_tyr_L[c] --> M_amp[c] + M_ppi[c] + M_tyrtrna[c] genes: LOCUS:MAL8P1_125# LOCUS:PF11_0181# proteins: GENE ASSOCIATION: (MAL8P1_125) or (PF11_0181)
reactant: 761180
kinetic law: 761252
product: 761216
reversible: false
name: Tyrosine-tRNA_ligase
fast: false
product: 761228
reactant: 761204

761192
type: SpeciesReference
stoichiometry: 1.0
species: 301683

301683
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Tyr_R

761240
type: SpeciesReference
stoichiometry: 1.0
species: 301713

761180
type: SpeciesReference
stoichiometry: 1.0
species: 300414

305256
type: LocalParameter
units: 756622
value: 0.0

305253
type: LocalParameter
value: 0.0

305250
type: LocalParameter
units: 756574
value: 999999.0

305247
type: LocalParameter
units: 756574
value: 0.0

761216
type: SpeciesReference
stoichiometry: 1.0
species: 300370

761228
type: SpeciesReference
stoichiometry: 1.0
species: 301416

761204
type: SpeciesReference
stoichiometry: 1.0
species: 301707

300210
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Amino_5_hydroxymethyl_2_methylpyrimidine_C6H9N3O

301858
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Oxidized_glutathione_C20H30N6O12S2

302237
type: Reaction
product: 765497
kinetic law: 765521
fast: false
name: R_PDH_ap
reactant: 765449
product: 765485
reactant: 765473
reversible: false
notes: Abbreviation: R_PDH_ap EC Number: 1.2.4.1+2.3.1.12+1.8.1.4 SUBSYSTEM: Carbohydrates_PyruvateMetabolism ; Others_MitochondrialTCACycle ; Lipids_FattyAcidSynthesis Equation: M[c] oa[ap] + M_nad[ap] + M_pyr[ap] --> M_accoa[ap] + M[c] o2[ap] + M_nadh[ap] genes: LOCUS:PF11_0256# LOCUS:PF14_0441# LOCUS:PF10_0407# LOCUS:PFC0170c# LOCUS:PF08_0066# LOCUS:PFL1550w# proteins: GENE ASSOCIATION: ((PF11_0256) or (PF14_0441)) and (PF10_0407) and (PFC0170c) and ((PF08_0066) or (PFL1550w))
product: 765509
reactant: 765461

765497
type: SpeciesReference
stoichiometry: 1.0
species: 300512

305944
type: LocalParameter
units: 756622
value: 0.0

305943
type: LocalParameter
value: 0.0

305942
type: LocalParameter
units: 756574
value: 999999.0

305940
type: LocalParameter
units: 756574
value: 0.0

765449
type: SpeciesReference
stoichiometry: 1.0
species: 300520

765485
type: SpeciesReference
stoichiometry: 1.0
species: 300300

765473
type: SpeciesReference
stoichiometry: 1.0
species: 301493

301493
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Pyruvate_C3H3O3

765509
type: SpeciesReference
stoichiometry: 1.0
species: 301134

765461
type: SpeciesReference
stoichiometry: 1.0
species: 301128

303776
type: Reaction
reactant: 800015
reactant: 800028
reversible: false
product: 800052
name: 5'-nucleotidase
notes: Abbreviation: R_NTD2pp EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_h2o[c] + M_ump[c] --> M_pi[c] + M_uri[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
fast: false
product: 800040
kinetic law: 800064

800015
type: SpeciesReference
stoichiometry: 1.0
species: 300903

800028
type: SpeciesReference
stoichiometry: 1.0
species: 301723

800052
type: SpeciesReference
stoichiometry: 1.0
species: 301737

800040
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308824
type: LocalParameter
units: 756622
value: 0.0

308823
type: LocalParameter
value: 0.0

308821
type: LocalParameter
units: 756574
value: 999999.0

308820
type: LocalParameter
units: 756574
value: 0.0

302181
type: Reaction
kinetic law: 763772
product: 763759
reactant: 763747
notes: Abbreviation: R_MAN6PI EC Number: 5.3.1.8 SUBSYSTEM: Carbohydrates_MannoseFructoseMetabolism Equation: M[m] an6p[c] <==> M_f6p[c] genes: LOCUS:MAL8P1_156# proteins: GENE ASSOCIATION: (MAL8P1_156)
fast: false
reversible: true
name: Mannose-6-phosphate_isomerase

305642
type: LocalParameter
units: 756622
value: 0.0

305639
type: LocalParameter
value: 0.0

305636
type: LocalParameter
units: 756574
value: 999999.0

305633
type: LocalParameter
units: 756574
value: -999999.0

763759
type: SpeciesReference
stoichiometry: 1.0
species: 300707

763747
type: SpeciesReference
stoichiometry: 1.0
species: 301078

301725
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: P1,P4-Bis(5'-uridyl) tetraphosphate

301579
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: D_Tagatose_6_phosphate_C6H11O9P

303218
type: Reaction
reactant: 787217
product: 787253
product: 787229
reversible: false
product: 787241
name: CDP-diacylglycerol-serine_O-phosphatidyltransferase
notes: Abbreviation: R_PSSA140 EC Number: 2.7.8.8 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] dpdtdecg[c] + M_ser_L[c] --> M[c] mp[c] + M_h[c] + M_ps140[c] genes: LOCUS:MAL13P1_335# proteins: GENE ASSOCIATION: (MAL13P1_335)
fast: false
kinetic law: 787265
reactant: 787205

787217
type: SpeciesReference
stoichiometry: 1.0
species: 301533

787253
type: SpeciesReference
stoichiometry: 1.0
species: 301446

301446
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

787229
type: SpeciesReference
stoichiometry: 1.0
species: 300510

787241
type: SpeciesReference
stoichiometry: 1.0
species: 300911

307764
type: LocalParameter
units: 756622
value: 0.0

307762
type: LocalParameter
value: 0.0

307761
type: LocalParameter
units: 756574
value: 999999.0

307759
type: LocalParameter
units: 756574
value: 0.0

787205
type: SpeciesReference
stoichiometry: 1.0
species: 300468

300468
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

304373
type: Reaction
kinetic law: 811544
product: 811532
reactant: 811520
notes: Abbreviation: R_ACCOAtap EC Number: SUBSYSTEM: Transport_AP Equation: M_accoa[ap] <==> M_accoa[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_ACCOAtap

309919
type: LocalParameter
units: 756622
value: 0.0

309917
type: LocalParameter
value: 0.0

309916
type: LocalParameter
units: 756574
value: 999999.0

309914
type: LocalParameter
units: 756574
value: -999999.0

811532
type: SpeciesReference
stoichiometry: 1.0
species: 300302

811520
type: SpeciesReference
stoichiometry: 1.0
species: 300300

302448
type: Reaction
kinetic law: 771463
product: 771450
reactant: 771438
notes: Abbreviation: R_EX_chol_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M[c] hol <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_chol_e_

306414
type: LocalParameter
units: 756622
value: 0.0

306413
type: LocalParameter
value: 0.0

306412
type: LocalParameter
units: 756574
value: 999999.0

306410
type: LocalParameter
units: 756574
value: -999999.0

771450
type: SpeciesReference
stoichiometry: 1.0
species: 301793

301793
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Choline_C5H14NO

771438
type: SpeciesReference
stoichiometry: 1.0
species: 300476

302849
type: Reaction
fast: false
reactant: 778472
product: 778484
reactant: 778448
kinetic law: 778521
name: beta-ketoacyl-acyl-carrier-protein_synthase_I
product: 778508
reactant: 778460
product: 778496
notes: Abbreviation: R_3OAS181_ap EC Number: 2.3.1.41 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_hdeACP[ap] + M[m] alACP[ap] --> M_3ocvac11eACP[ap] + M_ACP[ap] + M[c] o2[ap] genes: LOCUS:PFB0505c# LOCUS:PFF1275c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFF1275c)
reversible: false

778472
type: SpeciesReference
stoichiometry: 1.0
species: 301062

778484
type: SpeciesReference
stoichiometry: 1.0
species: 300162

778448
type: SpeciesReference
stoichiometry: 1.0
species: 300909

307120
type: LocalParameter
units: 756622
value: 0.0

307118
type: LocalParameter
value: 0.0

307117
type: LocalParameter
units: 756574
value: 999999.0

307116
type: LocalParameter
units: 756574
value: 0.0

778508
type: SpeciesReference
stoichiometry: 1.0
species: 300512

778460
type: SpeciesReference
stoichiometry: 1.0
species: 300949

778496
type: SpeciesReference
stoichiometry: 1.0
species: 300270

302734
type: Reaction
fast: false
product: 775153
reactant: 775043
product: 775093
notes: Abbreviation: R_lipid1 EC Number: SUBSYSTEM: Lipids Equation: M_Rtotal[c] <==> M_dca[c] + M_ddca[c] + M_ttdca[c] + M_ttdcea[c] + M_hdca[c] + M_hdcea[c] + M_ocdca[c] + M_ocdcea[c] + M_hxa[c] + M_octa[c] genes: proteins: GENE ASSOCIATION:
kinetic law: 775177
name: R_lipid1
product: 775068
product: 775117
product: 775055
product: 775081
product: 775129
product: 775165
product: 775105
product: 775141
reversible: true

775153
type: SpeciesReference
stoichiometry: 1.0
species: 300980

300980
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Hexanoate_n_C60_C6H11O2

775043
type: SpeciesReference
stoichiometry: 1.0
species: 300280

775093
type: SpeciesReference
stoichiometry: 1.0
species: 301703

306919
type: LocalParameter
units: 756622
value: 0.0

306917
type: LocalParameter
value: 0.0

306916
type: LocalParameter
units: 756574
value: 999999.0

306915
type: LocalParameter
units: 756574
value: -999999.0

775068
type: SpeciesReference
stoichiometry: 1.0
species: 300594

775117
type: SpeciesReference
stoichiometry: 1.0
species: 300939

775055
type: SpeciesReference
stoichiometry: 1.0
species: 300568

300568
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Decanoate_n_C100_C10H19O2

775081
type: SpeciesReference
stoichiometry: 1.0
species: 301697

775129
type: SpeciesReference
stoichiometry: 1.0
species: 301214

775165
type: SpeciesReference
stoichiometry: 1.0
species: 301228

301228
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: octanoate_n_C80_C8H15O2

775105
type: SpeciesReference
stoichiometry: 1.0
species: 300933

775141
type: SpeciesReference
stoichiometry: 1.0
species: 301220

300941
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hexadecenoate_n_C161_C16H29O2

304451
type: Reaction
kinetic law: 812512
product: 812500
reactant: 812488
notes: Abbreviation: R_NADHtap EC Number: SUBSYSTEM: Transport_AP Equation: M_nadh[ap] <==> M_nadh[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_NADHtap

310062
type: LocalParameter
units: 756622
value: 0.0

310060
type: LocalParameter
value: 0.0

310059
type: LocalParameter
units: 756574
value: 999999.0

310057
type: LocalParameter
units: 756574
value: -999999.0

812500
type: SpeciesReference
stoichiometry: 1.0
species: 301136

812488
type: SpeciesReference
stoichiometry: 1.0
species: 301134

300628
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: _S_Dihydroorotate_C5H5N2O4

299994
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_Acyl_sn_glycero_3_phosphoglycerol_n_C180_C24H48O9P1

304250
type: Reaction
reversible: true
reactant: 809475
name: R_CYSt2r
fast: false
product: 809499
notes: Abbreviation: R_CYSt2r EC Number: SUBSYSTEM: Transport_aa Equation: M[c] ys_L[e] + M_h[e] <==> M[c] ys_L[c] + M_h[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
product: 809511
reactant: 809487
kinetic law: 809523

809475
type: SpeciesReference
stoichiometry: 1.0
species: 300540

300540
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Cysteine_C3H7NO2S

809499
type: SpeciesReference
stoichiometry: 1.0
species: 300538

809511
type: SpeciesReference
stoichiometry: 1.0
species: 300911

809487
type: SpeciesReference
stoichiometry: 1.0
species: 300913

309693
type: LocalParameter
units: 756622
value: 0.0

309692
type: LocalParameter
value: 0.0

309690
type: LocalParameter
units: 756574
value: 999999.0

309689
type: LocalParameter
units: 756574
value: -999999.0

302623
type: Reaction
kinetic law: 773685
product: 773673
reactant: 773661
notes: Abbreviation: R_EX_no3_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_no3 <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_no3_e_

306723
type: LocalParameter
units: 756622
value: 0.0

306721
type: LocalParameter
value: 0.0

306720
type: LocalParameter
units: 756574
value: 999999.0

306719
type: LocalParameter
units: 756574
value: -999999.0

773673
type: SpeciesReference
stoichiometry: 1.0
species: 301916

301916
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nitrate_NO3

773661
type: SpeciesReference
stoichiometry: 1.0
species: 301176

303803
type: Reaction
reactant: 800571
notes: Abbreviation: R_NTD7 EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_amp[c] + M_h2o[c] --> M_adn[c] + M_pi[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
reversible: false
product: 800583
kinetic law: 800607
reactant: 800559
product: 800595
fast: false
name: 5'-nucleotidase

800571
type: SpeciesReference
stoichiometry: 1.0
species: 300903

800583
type: SpeciesReference
stoichiometry: 1.0
species: 300326

300326
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Adenosine_C10H13N5O4

308874
type: LocalParameter
units: 756622
value: 0.0

308872
type: LocalParameter
value: 0.0

308871
type: LocalParameter
units: 756574
value: 999999.0

308869
type: LocalParameter
units: 756574
value: 0.0

800559
type: SpeciesReference
stoichiometry: 1.0
species: 300370

800595
type: SpeciesReference
stoichiometry: 1.0
species: 301390

303536
type: Reaction
product: 794889
reactant: 794865
reactant: 794853
notes: Abbreviation: R_PGPP180 EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp180[c] --> M_pg180[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
kinetic law: 794901
fast: false
name: phosphatidylglycerophosphatase
reversible: false
product: 794877

794889
type: SpeciesReference
stoichiometry: 1.0
species: 301390

794865
type: SpeciesReference
stoichiometry: 1.0
species: 301370

794853
type: SpeciesReference
stoichiometry: 1.0
species: 300903

308352
type: LocalParameter
units: 756622
value: 0.0

308350
type: LocalParameter
value: 0.0

308349
type: LocalParameter
units: 756574
value: 999999.0

308347
type: LocalParameter
units: 756574
value: 0.0

794877
type: SpeciesReference
stoichiometry: 1.0
species: 301356

303179
type: Reaction
fast: false
reactant: 786380
product: 786404
reversible: false
reactant: 786368
notes: Abbreviation: R_DASYN180 EC Number: 2.7.7.41 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] tp[c] + M_h[c] + M_pa180[c] --> M[c] dpdodecg[c] + M_ppi[c] genes: LOCUS:PF14_0097# proteins: GENE ASSOCIATION: (PF14_0097)
kinetic law: 786416
product: 786392
name: phosphatidate_cytidylyltransferase
reactant: 786355

786380
type: SpeciesReference
stoichiometry: 1.0
species: 301284

786404
type: SpeciesReference
stoichiometry: 1.0
species: 301416

786368
type: SpeciesReference
stoichiometry: 1.0
species: 300911

307693
type: LocalParameter
units: 756622
value: 0.0

307692
type: LocalParameter
value: 0.0

307690
type: LocalParameter
units: 756574
value: 999999.0

307689
type: LocalParameter
units: 756574
value: 0.0

786392
type: SpeciesReference
stoichiometry: 1.0
species: 300460

786355
type: SpeciesReference
stoichiometry: 1.0
species: 300536

300769
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Glyceraldehyde_3_phosphate_C3H5O6P

302964
type: Reaction
reactant: 781707
product: 781767
reactant: 781671
reversible: false
product: 781719
fast: false
product: 781743
name: fatty-acid_synthase
kinetic law: 781779
reactant: 781683
product: 781755
reactant: 781695
notes: Abbreviation: R_FAS260_ap EC Number: 2.3.1.85 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: (3.0) M_h[ap] + M[m] alcoa[ap] + (2.0) M_nadph[ap] + M_ttc[ap] --> M[c] o2[ap] + M[c] oa[ap] + M_h2o[ap] + M_hexc[ap] + (2.0) M_nadp[ap] genes: LOCUS:PFB0505c# LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFI1125c)
product: 781731

781707
type: SpeciesReference
stoichiometry: 1.0
species: 301693

781767
type: SpeciesReference
stoichiometry: 2.0
species: 301140

781671
type: SpeciesReference
stoichiometry: 3.0
species: 300909

781719
type: SpeciesReference
stoichiometry: 1.0
species: 300512

781743
type: SpeciesReference
stoichiometry: 1.0
species: 300901

307318
type: LocalParameter
units: 756622
value: 0.0

307316
type: LocalParameter
value: 0.0

307315
type: LocalParameter
units: 756574
value: 999999.0

307314
type: LocalParameter
units: 756574
value: 0.0

781683
type: SpeciesReference
stoichiometry: 1.0
species: 301070

781755
type: SpeciesReference
stoichiometry: 1.0
species: 300955

300955
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: hexacosanoate_n_C260_C26H51O2

781695
type: SpeciesReference
stoichiometry: 2.0
species: 301146

781731
type: SpeciesReference
stoichiometry: 1.0
species: 300520

304097
type: Reaction
kinetic law: 807042
product: 807029
reactant: 807016
notes: Abbreviation: R_FE2t EC Number: SUBSYSTEM: Transport Equation: M_fe2[e] --> M_fe2[c] genes: LOCUS:PFF0450c# proteins: GENE ASSOCIATION: (PFF0450c)
fast: false
reversible: false
name: R_FE2t

309413
type: LocalParameter
units: 756622
value: 0.0

309411
type: LocalParameter
value: 0.0

309410
type: LocalParameter
units: 756574
value: 999999.0

309408
type: LocalParameter
units: 756574
value: 0.0

807029
type: SpeciesReference
stoichiometry: 1.0
species: 300723

807016
type: SpeciesReference
stoichiometry: 1.0
species: 300725

302075
type: Reaction
notes: Abbreviation: R_METAT EC Number: 2.5.1.6 SUBSYSTEM: AminoAcids_MetPolyamineMetabolism Equation: M_atp[c] + M_h2o[c] + M[m] et_L[c] --> M_amet[c] + M_pi[c] + M_ppi[c] genes: LOCUS:PFI1090w# proteins: GENE ASSOCIATION: (PFI1090w)
product: 760187
fast: false
name: methionine_adenosyltransferase
reactant: 760139
reversible: false
reactant: 760127
kinetic law: 760199
reactant: 760151
product: 760175
product: 760163

760187
type: SpeciesReference
stoichiometry: 1.0
species: 301416

760139
type: SpeciesReference
stoichiometry: 1.0
species: 300903

760127
type: SpeciesReference
stoichiometry: 1.0
species: 300414

305142
type: LocalParameter
units: 756622
value: 0.0

305139
type: LocalParameter
value: 0.0

305136
type: LocalParameter
units: 756574
value: 999999.0

305135
type: LocalParameter
units: 756574
value: 0.0

760151
type: SpeciesReference
stoichiometry: 1.0
species: 301084

760175
type: SpeciesReference
stoichiometry: 1.0
species: 301390

760163
type: SpeciesReference
stoichiometry: 1.0
species: 300360

300935
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hexadecanoate_n_C160_C16H31O2

303353
type: Reaction
reactant: 790560
reactant: 790548
product: 790584
reversible: false
kinetic law: 790608
fast: false
product: 790596
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL2E140 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpe140[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_ttdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 790572

790560
type: SpeciesReference
stoichiometry: 1.0
species: 300903

790548
type: SpeciesReference
stoichiometry: 1.0
species: 300032

300032
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_Acyl_sn_glycero_3_phosphoethanolamine_n_C140_C19H40NO7P1

790584
type: SpeciesReference
stoichiometry: 1.0
species: 300911

308016
type: LocalParameter
units: 756622
value: 0.0

308015
type: LocalParameter
value: 0.0

308013
type: LocalParameter
units: 756574
value: 999999.0

308012
type: LocalParameter
units: 756574
value: 0.0

790596
type: SpeciesReference
stoichiometry: 1.0
species: 301697

790572
type: SpeciesReference
stoichiometry: 1.0
species: 300775

303056
type: Reaction
fast: false
reversible: false
reactant: 783559
kinetic law: 783607
product: 783583
reactant: 783571
notes: Abbreviation: R_KAT8 EC Number: 2.3.1.16 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_3oodcoa[c] + M[c] oa[c] --> M_accoa[c] + M_pmtcoa[c] genes: LOCUS:PF14_0484# proteins: GENE ASSOCIATION: (PF14_0484)
name: acetyl-CoA_C-acyltransferase
product: 783595

783559
type: SpeciesReference
stoichiometry: 1.0
species: 300186

307476
type: LocalParameter
units: 756622
value: 0.0

307475
type: LocalParameter
value: 0.0

307473
type: LocalParameter
units: 756574
value: 999999.0

307472
type: LocalParameter
units: 756574
value: 0.0

783583
type: SpeciesReference
stoichiometry: 1.0
species: 300302

783571
type: SpeciesReference
stoichiometry: 1.0
species: 300522

783595
type: SpeciesReference
stoichiometry: 1.0
species: 301398

302870
type: Reaction
reactant: 778979
product: 779016
notes: Abbreviation: R_AGPAT160_ap EC Number: 2.3.1.51 SUBSYSTEM: Lipids_FattyAcidSynthesis ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1hdecg3p[ap] + M_palmACP[ap] --> M_ACP[ap] + M_pa160[ap] genes: LOCUS:PF14_0421# proteins: GENE ASSOCIATION: (PF14_0421)
name: 1-acylglycerol-3-phosphate_O-acyltransferase
reversible: false
fast: false
kinetic law: 779029
reactant: 778991
product: 779004

778979
type: SpeciesReference
stoichiometry: 1.0
species: 300006

300006
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: 1_hexadecanoyl_sn_glycerol_3_phosphate_C19H37O7P1

779016
type: SpeciesReference
stoichiometry: 1.0
species: 301274

307155
type: LocalParameter
units: 756622
value: 0.0

307153
type: LocalParameter
value: 0.0

307152
type: LocalParameter
units: 756574
value: 999999.0

307151
type: LocalParameter
units: 756574
value: 0.0

778991
type: SpeciesReference
stoichiometry: 1.0
species: 301292

779004
type: SpeciesReference
stoichiometry: 1.0
species: 300270

302305
type: Reaction
kinetic law: 768051
product: 768027
fast: false
product: 768039
reversible: false
reactant: 768003
reactant: 768015
notes: Abbreviation: R_HMBS_ap EC Number: 2.5.1.61 SUBSYSTEM: Cofactors_PorphyrinMetabolism Equation: M_h2o[ap] + (4.0) M_ppbng[ap] --> M_hmbil[ap] + (4.0) M_nh4[ap] genes: LOCUS:PFL0480w# proteins: GENE ASSOCIATION: (PFL0480w)
name: hydroxymethylbilane_synthase

306124
type: LocalParameter
units: 756622
value: 0.0

306123
type: LocalParameter
value: 0.0

306122
type: LocalParameter
units: 756574
value: 999999.0

306120
type: LocalParameter
units: 756574
value: 0.0

768027
type: SpeciesReference
stoichiometry: 1.0
species: 300972

768039
type: SpeciesReference
stoichiometry: 4.0
species: 301158

768003
type: SpeciesReference
stoichiometry: 1.0
species: 300901

768015
type: SpeciesReference
stoichiometry: 4.0
species: 301410

301410
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Porphobilinogen_C10H13N2O4

300508
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: CMP_C9H12N3O8P

301068
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: L_Malate_C4H4O5

304478
type: Reaction
kinetic law: 812986
product: 812974
reactant: 812961
notes: Abbreviation: R_DCYTt EC Number: SUBSYSTEM: Transport_base Equation: M_dcyt[e] <==> M_dcyt[c] genes: LOCUS:PFA0160c# LOCUS:MAL8P1_32# LOCUS:PF13_0252# LOCUS:PF14_0662# proteins: GENE ASSOCIATION: (PFA0160c) or (MAL8P1_32) or (PF13_0252) or (PF14_0662)
fast: false
reversible: true
name: R_DCYTt

310111
type: LocalParameter
units: 756622
value: 0.0

310110
type: LocalParameter
value: 0.0

310108
type: LocalParameter
units: 756574
value: 999999.0

310107
type: LocalParameter
units: 756574
value: -999999.0

812974
type: SpeciesReference
stoichiometry: 1.0
species: 300586

812961
type: SpeciesReference
stoichiometry: 1.0
species: 300588

300308
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N_Acetyl_D_glucosamine_6_phosphate_C8H14NO9P

304520
type: Reaction
kinetic law: 813495
product: 813483
reactant: 813471
notes: Abbreviation: R_NACUP EC Number: SUBSYSTEM: Transport_cofactor Equation: M_nac[e] --> M_nac[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: false
name: R_NACUP

310188
type: LocalParameter
units: 756622
value: 0.0

310187
type: LocalParameter
value: 0.0

310185
type: LocalParameter
units: 756574
value: 999999.0

310184
type: LocalParameter
units: 756574
value: 0.0

813483
type: SpeciesReference
stoichiometry: 1.0
species: 301124

813471
type: SpeciesReference
stoichiometry: 1.0
species: 301126

301126
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Nicotinate_C6H4NO2

301090
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Methionyl_tRNA_Met_C5H10NOSR

302316
type: Reaction
product: 768340
reactant: 768304
kinetic law: 768352
reactant: 768316
notes: Abbreviation: R_PPPGO3_mt EC Number: 1.3.3.4 SUBSYSTEM: Cofactors_PorphyrinMetabolism Equation: (3.0) M_fum[m] + M_pppg9[m] --> M_ppp9[m] + (3.0) M_succ[m] genes: LOCUS:PF10_0275# proteins: GENE ASSOCIATION: (PF10_0275)
product: 768328
name: protoporphyrinogen_oxidase
fast: false
reversible: false

768340
type: SpeciesReference
stoichiometry: 3.0
species: 301567

768304
type: SpeciesReference
stoichiometry: 3.0
species: 300761

306149
type: LocalParameter
units: 756622
value: 0.0

306148
type: LocalParameter
value: 0.0

306147
type: LocalParameter
units: 756574
value: 999999.0

306145
type: LocalParameter
units: 756574
value: 0.0

768316
type: SpeciesReference
stoichiometry: 1.0
species: 301430

768328
type: SpeciesReference
stoichiometry: 1.0
species: 301424

301424
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Protoporphyrin_C34H32N4O4

304277
type: Reaction
reactant: 810016
name: R_LYSt2r
product: 810052
product: 810040
notes: Abbreviation: R_LYSt2r EC Number: SUBSYSTEM: Transport_aa Equation: M_h[e] + M_lys_L[e] <==> M_h[c] + M_lys_L[c] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
reversible: true
reactant: 810028
fast: false
kinetic law: 810064

810016
type: SpeciesReference
stoichiometry: 1.0
species: 300913

810052
type: SpeciesReference
stoichiometry: 1.0
species: 301046

810040
type: SpeciesReference
stoichiometry: 1.0
species: 300911

810028
type: SpeciesReference
stoichiometry: 1.0
species: 301048

309743
type: LocalParameter
units: 756622
value: 0.0

309741
type: LocalParameter
value: 0.0

309740
type: LocalParameter
units: 756574
value: 999999.0

309738
type: LocalParameter
units: 756574
value: -999999.0

303248
type: Reaction
product: 787966
kinetic law: 787990
reactant: 787930
fast: false
reversible: false
reactant: 787942
name: glycerophosphodiester_phosphodiesterase
product: 787978
notes: Abbreviation: R_GPDDA2pp EC Number: 3.1.4.46 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_g3pe[c] + M_h2o[c] --> M[e] tha[c] + M_glyc3p[c] + M_h[c] genes: LOCUS:PF14_0060# proteins: GENE ASSOCIATION: (PF14_0060)
product: 787954

787966
type: SpeciesReference
stoichiometry: 1.0
species: 300851

307818
type: LocalParameter
units: 756622
value: 0.0

307817
type: LocalParameter
value: 0.0

307815
type: LocalParameter
units: 756574
value: 999999.0

307814
type: LocalParameter
units: 756574
value: 0.0

787930
type: SpeciesReference
stoichiometry: 1.0
species: 300775

787942
type: SpeciesReference
stoichiometry: 1.0
species: 300903

787978
type: SpeciesReference
stoichiometry: 1.0
species: 300911

787954
type: SpeciesReference
stoichiometry: 1.0
species: 300701

303908
type: Reaction
reversible: false
fast: false
product: 802876
notes: Abbreviation: R_ATPH1e EC Number: 3.6.1.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_atp[c] + (2.0) M_h2o[c] --> M_amp[c] + (2.0) M_h[c] + (2.0) M_pi[c] genes: LOCUS:PF14_0297# proteins: GENE ASSOCIATION: (PF14_0297)
name: apyrase
product: 802888
reactant: 802840
kinetic law: 802900
reactant: 802852
product: 802864

802876
type: SpeciesReference
stoichiometry: 2.0
species: 300911

802888
type: SpeciesReference
stoichiometry: 2.0
species: 301390

802840
type: SpeciesReference
stoichiometry: 1.0
species: 300414

309066
type: LocalParameter
units: 756622
value: 0.0

309065
type: LocalParameter
value: 0.0

309063
type: LocalParameter
units: 756574
value: 999999.0

309062
type: LocalParameter
units: 756574
value: 0.0

802852
type: SpeciesReference
stoichiometry: 2.0
species: 300903

802864
type: SpeciesReference
stoichiometry: 1.0
species: 300370

303719
type: Reaction
fast: false
reactant: 798835
notes: Abbreviation: R_DADA EC Number: 3.5.4.4 SUBSYSTEM: Nucleotides_PurineMetabolism ; AminoAcids_MetPolyamineMetabolism Equation: M_dad_2[c] + M_h[c] + M_h2o[c] --> M_din[c] + M_nh4[c] genes: LOCUS:PF10_0289# proteins: GENE ASSOCIATION: (PF10_0289)
product: 798860
reactant: 798823
product: 798847
kinetic law: 798872
name: adenosine_deaminase
reactant: 798811
reversible: false

798835
type: SpeciesReference
stoichiometry: 1.0
species: 300903

798860
type: SpeciesReference
stoichiometry: 1.0
species: 301160

798823
type: SpeciesReference
stoichiometry: 1.0
species: 300911

798847
type: SpeciesReference
stoichiometry: 1.0
species: 300634

308720
type: LocalParameter
units: 756622
value: 0.0

308718
type: LocalParameter
value: 0.0

308717
type: LocalParameter
units: 756574
value: 999999.0

308715
type: LocalParameter
units: 756574
value: 0.0

798811
type: SpeciesReference
stoichiometry: 1.0
species: 300550

301812
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxycytidine_C9H13N3O4

301272
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate_C31H55O8P1

303191
type: Reaction
reversible: false
kinetic law: 786695
reactant: 786646
fast: false
product: 786682
notes: Abbreviation: R_PETHCT EC Number: 2.7.7.14 SUBSYSTEM: Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M[c] tp[c] + M[e] thamp[c] + M_h[c] --> M[c] dpea[c] + M_ppi[c] genes: LOCUS:PF13_0253# proteins: GENE ASSOCIATION: (PF13_0253)
reactant: 786634
name: ethanolamine-phosphate_cytidylyltransferase
reactant: 786658
product: 786670

307715
type: LocalParameter
units: 756622
value: 0.0

307714
type: LocalParameter
value: 0.0

307712
type: LocalParameter
units: 756574
value: 999999.0

307711
type: LocalParameter
units: 756574
value: 0.0

786646
type: SpeciesReference
stoichiometry: 1.0
species: 300705

786682
type: SpeciesReference
stoichiometry: 1.0
species: 301416

786634
type: SpeciesReference
stoichiometry: 1.0
species: 300536

786658
type: SpeciesReference
stoichiometry: 1.0
species: 300911

786670
type: SpeciesReference
stoichiometry: 1.0
species: 300472

302143
type: Reaction
product: 762613
reactant: 762577
fast: false
notes: Abbreviation: R_LDH_L EC Number: 1.1.1.27 SUBSYSTEM: Carbohydrates_Glycolysis Equation: M_lac_L[c] + M_nad[c] <==> M_h[c] + M_nadh[c] + M_pyr[c] genes: LOCUS:PF13_0141# LOCUS:PF13_0144# proteins: GENE ASSOCIATION: (PF13_0141) or (PF13_0144)
reversible: true
name: L-lactate_dehydrogenase
kinetic law: 762637
reactant: 762589
product: 762625
product: 762601

762613
type: SpeciesReference
stoichiometry: 1.0
species: 301136

762577
type: SpeciesReference
stoichiometry: 1.0
species: 301030

305452
type: LocalParameter
units: 756622
value: 0.0

305449
type: LocalParameter
value: 0.0

305446
type: LocalParameter
units: 756574
value: 999999.0

305443
type: LocalParameter
units: 756574
value: -999999.0

762589
type: SpeciesReference
stoichiometry: 1.0
species: 301130

762625
type: SpeciesReference
stoichiometry: 1.0
species: 301495

762601
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302277
type: Reaction
reactant: 766897
product: 766921
kinetic law: 766945
fast: false
name: aminodeoxychorismate_synthase
notes: Abbreviation: R_ADCS EC Number: 2.6.1.85 SUBSYSTEM: Cofactors_FolateBiosynthesis Equation: M[c] hor[c] + M_gln_L[c] --> M_4adcho[c] + M_glu_L[c] genes: LOCUS:PFI1100w# proteins: GENE ASSOCIATION: (PFI1100w)
reactant: 766909
product: 766933
reversible: false

766897
type: SpeciesReference
stoichiometry: 1.0
species: 300480

766921
type: SpeciesReference
stoichiometry: 1.0
species: 300208

300208
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_amino_4_deoxychorismate_C10H10NO5

306054
type: LocalParameter
units: 756622
value: 0.0

306053
type: LocalParameter
value: 0.0

306052
type: LocalParameter
units: 756574
value: 999999.0

306050
type: LocalParameter
units: 756574
value: 0.0

766909
type: SpeciesReference
stoichiometry: 1.0
species: 300819

766933
type: SpeciesReference
stoichiometry: 1.0
species: 300829

303125
type: Reaction
kinetic law: 785121
product: 785108
product: 785095
reactant: 785082
notes: Abbreviation: R_MECDPS_ap EC Number: 4.6.1.12 SUBSYSTEM: Lipids_IsoprenoidsMetabolism Equation: M_2p4c2me[ap] --> M_2mecdp[ap] + M[c] mp[ap] genes: LOCUS:PFB0420w# proteins: GENE ASSOCIATION: (PFB0420w)
fast: false
reversible: false
name: 2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase

307596
type: LocalParameter
units: 756622
value: 0.0

307594
type: LocalParameter
value: 0.0

307593
type: LocalParameter
units: 756574
value: 999999.0

307592
type: LocalParameter
units: 756574
value: 0.0

785108
type: SpeciesReference
stoichiometry: 1.0
species: 300508

785095
type: SpeciesReference
stoichiometry: 1.0
species: 300078

785082
type: SpeciesReference
stoichiometry: 1.0
species: 300096

301006
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: IMP_C10H11N4O8P

302021
type: Reaction
notes: Abbreviation: R_GLUDxi EC Number: 1.4.1.2 SUBSYSTEM: AminoAcids_GluMetabolism ; AminoAcids_NitrogenMetabolism Equation: M_glu_L[c] + M_h2o[c] + M_nad[c] --> M_akg[c] + M_h[c] + M_nadh[c] + M_nh4[c] genes: LOCUS:PF08_0132# proteins: GENE ASSOCIATION: (PF08_0132)
product: 758068
fast: false
reactant: 758006
reactant: 758031
reactant: 758019
name: glutamate_dehydrogenase
product: 758056
reversible: false
product: 758044
product: 758080
kinetic law: 758092

758068
type: SpeciesReference
stoichiometry: 1.0
species: 301136

758006
type: SpeciesReference
stoichiometry: 1.0
species: 300829

758031
type: SpeciesReference
stoichiometry: 1.0
species: 301130

758019
type: SpeciesReference
stoichiometry: 1.0
species: 300903

758056
type: SpeciesReference
stoichiometry: 1.0
species: 300911

758044
type: SpeciesReference
stoichiometry: 1.0
species: 300346

758080
type: SpeciesReference
stoichiometry: 1.0
species: 301160

304920
type: LocalParameter
units: 756622
value: 0.0

304917
type: LocalParameter
value: 0.0

304914
type: LocalParameter
units: 756574
value: 999999.0

304913
type: LocalParameter
units: 756574
value: 0.0

302785
type: Reaction
reactant: 776770
reactant: 776757
name: dolichyl-phosphate-mannose-glycolipid_alpha-mannosyltransferase
notes: Abbreviation: R_DOLPMT3 EC Number: 2.4.1.130 SUBSYSTEM: Lipids_GPIAnchorBiosynthesis ; Lipids_DolicholMetabolism Equation: (0.1) M_dolmanp_L[c] + (0.1) M[m] 6mpdol_L[c] --> (0.1) M_dolp_L[c] + M_h[c] + (0.1) M[m] 7mpdol_L[c] genes: LOCUS:MAL13P1_210# proteins: GENE ASSOCIATION: (MAL13P1_210)
product: 776794
fast: false
kinetic law: 776818
reversible: false
product: 776782
product: 776806

776770
type: SpeciesReference
stoichiometry: 0.1
species: 301056

776757
type: SpeciesReference
stoichiometry: 0.1
species: 300650

776794
type: SpeciesReference
stoichiometry: 1.0
species: 300911

307007
type: LocalParameter
units: 756622
value: 0.0

307006
type: LocalParameter
value: 0.0

307005
type: LocalParameter
units: 756574
value: 999999.0

307003
type: LocalParameter
units: 756574
value: 0.0

776782
type: SpeciesReference
stoichiometry: 0.1
species: 300654

776806
type: SpeciesReference
stoichiometry: 0.1
species: 301058

301058
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha-D-Mannosyl)7-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol

302488
type: Reaction
kinetic law: 771969
product: 771957
reactant: 771945
notes: Abbreviation: R_EX_etha_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M tha[e] <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_etha_e_

306484
type: LocalParameter
units: 756622
value: 0.0

306483
type: LocalParameter
value: 0.0

306482
type: LocalParameter
units: 756574
value: 999999.0

306480
type: LocalParameter
units: 756574
value: -999999.0

771957
type: SpeciesReference
stoichiometry: 1.0
species: 301822

301822
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Ethanolamine_C2H8NO

771945
type: SpeciesReference
stoichiometry: 1.0
species: 300703

300703
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Ethanolamine_C2H8NO

304547
type: Reaction
kinetic law: 813897
product: 813885
reactant: 813873
notes: Abbreviation: R_FOLATEt EC Number: SUBSYSTEM: Transport_cofactor Equation: M_fol[e] <==> M_fol[c] genes: LOCUS:MAL8P1_13# LOCUS:PF11_0172# LOCUS:PF10_0215# proteins: GENE ASSOCIATION: (MAL8P1_13) or (PF11_0172) or (PF10_0215)
fast: false
reversible: true
name: R_FOLATEt

310238
type: LocalParameter
units: 756622
value: 0.0

310236
type: LocalParameter
value: 0.0

310235
type: LocalParameter
units: 756574
value: 999999.0

310233
type: LocalParameter
units: 756574
value: -999999.0

813885
type: SpeciesReference
stoichiometry: 1.0
species: 300743

300743
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: olate_C19H18N7O6

813873
type: SpeciesReference
stoichiometry: 1.0
species: 300745

300745
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: olate_C19H18N7O6

302908
type: Reaction
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
fast: false
reactant: 779875
reactant: 779887
reactant: 779899
product: 779911
kinetic law: 779936
product: 779924
notes: Abbreviation: R_EAR40x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_but2eACP[ap] + M_h[ap] + M_nadh[ap] --> M_butACP[ap] + M_nad[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
reversible: false

779875
type: SpeciesReference
stoichiometry: 1.0
species: 300420

300420
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

779887
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779899
type: SpeciesReference
stoichiometry: 1.0
species: 301134

779911
type: SpeciesReference
stoichiometry: 1.0
species: 300422

307220
type: LocalParameter
units: 756622
value: 0.0

307218
type: LocalParameter
value: 0.0

307217
type: LocalParameter
units: 756574
value: 999999.0

307216
type: LocalParameter
units: 756574
value: 0.0

779924
type: SpeciesReference
stoichiometry: 1.0
species: 301128

302882
type: Reaction
notes: Abbreviation: R_EAR100x_ap EC Number: 1.3.1.9 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M_nadh[ap] + M_tdec2eACP[ap] --> M_dcaACP[ap] + M_nad[ap] genes: LOCUS:PFF0730c# proteins: GENE ASSOCIATION: (PFF0730c)
reactant: 779236
fast: false
product: 779260
reversible: false
kinetic law: 779284
product: 779272
reactant: 779224
name: enoyl-[acyl-carrier-protein]_reductase_(NADH)
reactant: 779248

779236
type: SpeciesReference
stoichiometry: 1.0
species: 301134

779260
type: SpeciesReference
stoichiometry: 1.0
species: 300564

307175
type: LocalParameter
units: 756622
value: 0.0

307173
type: LocalParameter
value: 0.0

307172
type: LocalParameter
units: 756574
value: 999999.0

307171
type: LocalParameter
units: 756574
value: 0.0

779272
type: SpeciesReference
stoichiometry: 1.0
species: 301128

779224
type: SpeciesReference
stoichiometry: 1.0
species: 300909

779248
type: SpeciesReference
stoichiometry: 1.0
species: 301595

301595
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

303443
type: Reaction
notes: Abbreviation: R_PLIPA2G141pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pg141[c] --> M_1agpg141[c] + M_h[c] + M_ttdcea[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
reactant: 792723
product: 792771
reversible: false
product: 792747
fast: false
name: phospholipase_A2
kinetic law: 792783
reactant: 792735
product: 792759

792723
type: SpeciesReference
stoichiometry: 1.0
species: 300903

792771
type: SpeciesReference
stoichiometry: 1.0
species: 301703

792747
type: SpeciesReference
stoichiometry: 1.0
species: 299988

308181
type: LocalParameter
units: 756622
value: 0.0

308180
type: LocalParameter
value: 0.0

308178
type: LocalParameter
units: 756574
value: 999999.0

308177
type: LocalParameter
units: 756574
value: 0.0

792735
type: SpeciesReference
stoichiometry: 1.0
species: 301350

301350
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Phosphatidylglycerol_ditetradec_7_enoyl_n_C141_C34H62O10P1

792759
type: SpeciesReference
stoichiometry: 1.0
species: 300911

303086
type: Reaction
product: 784199
reactant: 784175
product: 784211
kinetic law: 784223
fast: false
notes: Abbreviation: R_MI14PP EC Number: 3.1.3.57 SUBSYSTEM: Lipids_InositolPhosphateMetabolism Equation: M_h2o[c] + M[m] i14p[c] --> M[m] i4p_D[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
reactant: 784187
reversible: false
name: inositol-1,4-bisphosphate_1-phosphatase

784199
type: SpeciesReference
stoichiometry: 1.0
species: 301110

784175
type: SpeciesReference
stoichiometry: 1.0
species: 300903

784211
type: SpeciesReference
stoichiometry: 1.0
species: 301390

307528
type: LocalParameter
units: 756622
value: 0.0

307527
type: LocalParameter
value: 0.0

307525
type: LocalParameter
units: 756574
value: 999999.0

307524
type: LocalParameter
units: 756574
value: 0.0

784187
type: SpeciesReference
stoichiometry: 1.0
species: 301104

304346
type: Reaction
kinetic law: 811210
product: 811198
reactant: 811186
notes: Abbreviation: R_PA161tap EC Number: SUBSYSTEM: Transport_AP Equation: M_pa161[ap] <==> M_pa161[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_PA161tap

309869
type: LocalParameter
units: 756622
value: 0.0

309868
type: LocalParameter
value: 0.0

309866
type: LocalParameter
units: 756574
value: 999999.0

309865
type: LocalParameter
units: 756574
value: -999999.0

811198
type: SpeciesReference
stoichiometry: 1.0
species: 301280

811186
type: SpeciesReference
stoichiometry: 1.0
species: 301278

304049
type: Reaction
reactant: 806093
kinetic law: 806153
notes: Abbreviation: R_GTHS EC Number: 6.3.2.3 SUBSYSTEM: Redox_RedoxMetabolism Equation: M_atp[c] + M_glucys[c] + M_gly[c] --> M_adp[c] + M_gthrd[c] + M_h[c] + M_pi[c] genes: LOCUS:PFE0605c# proteins: GENE ASSOCIATION: (PFE0605c)
reversible: false
product: 806105
reactant: 806069
fast: false
product: 806129
product: 806141
reactant: 806081
name: Glutathione_synthase
product: 806117

806093
type: SpeciesReference
stoichiometry: 1.0
species: 300841

309325
type: LocalParameter
units: 756622
value: 0.0

309323
type: LocalParameter
value: 0.0

309322
type: LocalParameter
units: 756574
value: 999999.0

309320
type: LocalParameter
units: 756574
value: 0.0

806105
type: SpeciesReference
stoichiometry: 1.0
species: 300332

806069
type: SpeciesReference
stoichiometry: 1.0
species: 300414

806129
type: SpeciesReference
stoichiometry: 1.0
species: 300911

806141
type: SpeciesReference
stoichiometry: 1.0
species: 301390

806081
type: SpeciesReference
stoichiometry: 1.0
species: 300835

806117
type: SpeciesReference
stoichiometry: 1.0
species: 300879

301491
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Pyridoxine_C8H11NO3

304721
type: Reaction
kinetic law: 816412
product: 816400
reactant: 816388
notes: Abbreviation: R_Q8H2tmt EC Number: SUBSYSTEM: Transport_MT Equation: M_q8h2[m] <==> M_q8h2[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_Q8H2tmt

310557
type: LocalParameter
units: 756622
value: 0.0

310555
type: LocalParameter
value: 0.0

310554
type: LocalParameter
units: 756574
value: 999999.0

310552
type: LocalParameter
units: 756574
value: -999999.0

816400
type: SpeciesReference
stoichiometry: 1.0
species: 301503

816388
type: SpeciesReference
stoichiometry: 1.0
species: 301505

304424
type: Reaction
kinetic law: 812161
product: 812149
reactant: 812137
notes: Abbreviation: R_CTPtap EC Number: SUBSYSTEM: Transport_AP Equation: M[c] tp[ap] <==> M[c] tp[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_CTPtap

310012
type: LocalParameter
units: 756622
value: 0.0

310011
type: LocalParameter
value: 0.0

310009
type: LocalParameter
units: 756574
value: 999999.0

310008
type: LocalParameter
units: 756574
value: -999999.0

812149
type: SpeciesReference
stoichiometry: 1.0
species: 300536

812137
type: SpeciesReference
stoichiometry: 1.0
species: 300534

303941
type: Reaction
product: 803672
name: dTMP_kinase
reactant: 803647
fast: false
notes: Abbreviation: R_DUMPK EC Number: 2.7.4.9 SUBSYSTEM: Nucleotides_PyrimidineMetabolism Equation: M_atp[c] + M_dump[c] <==> M_adp[c] + M_dudp[c] genes: LOCUS:PFL2465c# proteins: GENE ASSOCIATION: (PFL2465c)
kinetic law: 803684
reactant: 803635
reversible: true
product: 803660

803672
type: SpeciesReference
stoichiometry: 1.0
species: 300682

300682
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: dUDP_C9H11N2O11P2

803647
type: SpeciesReference
stoichiometry: 1.0
species: 300684

309127
type: LocalParameter
units: 756622
value: 0.0

309125
type: LocalParameter
value: 0.0

309124
type: LocalParameter
units: 756574
value: 999999.0

309122
type: LocalParameter
units: 756574
value: -999999.0

803635
type: SpeciesReference
stoichiometry: 1.0
species: 300414

803660
type: SpeciesReference
stoichiometry: 1.0
species: 300332

303260
type: Reaction
reactant: 788220
reversible: false
name: glycerophosphodiester_phosphodiesterase
product: 788268
reactant: 788232
product: 788244
fast: false
notes: Abbreviation: R_GPDDA4pp EC Number: 3.1.4.46 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism Equation: M_g3pg[c] + M_h2o[c] --> M_glyc[c] + M_glyc3p[c] + M_h[c] genes: LOCUS:PF14_0060# proteins: GENE ASSOCIATION: (PF14_0060)
kinetic law: 788280
product: 788256

788220
type: SpeciesReference
stoichiometry: 1.0
species: 300777

788268
type: SpeciesReference
stoichiometry: 1.0
species: 300911

788232
type: SpeciesReference
stoichiometry: 1.0
species: 300903

788244
type: SpeciesReference
stoichiometry: 1.0
species: 300855

307840
type: LocalParameter
units: 756622
value: 0.0

307839
type: LocalParameter
value: 0.0

307837
type: LocalParameter
units: 756574
value: 999999.0

307836
type: LocalParameter
units: 756574
value: 0.0

788256
type: SpeciesReference
stoichiometry: 1.0
species: 300851

301701
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: tetradecenoate_n_C141_C14H25O2

302049
type: Reaction
product: 759198
product: 759186
product: 759210
reversible: false
reactant: 759150
reactant: 759162
reactant: 759174
kinetic law: 759222
fast: false
notes: Abbreviation: R_LEUTRS EC Number: 6.1.1.4 SUBSYSTEM: AminoAcids_LeuIleValMetabolism Equation: M_atp[c] + M_leu_L[c] + M_trnaleu[c] --> M_amp[c] + M_leutrna[c] + M_ppi[c] genes: LOCUS:PF08_0011# LOCUS:PFF1095w# proteins: GENE ASSOCIATION: (PF08_0011) or (PFF1095w)
name: Leucine-tRNA_ligase

759198
type: SpeciesReference
stoichiometry: 1.0
species: 301040

301040
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Leucyl_tRNA_Leu_C6H12NOR

759186
type: SpeciesReference
stoichiometry: 1.0
species: 300370

759210
type: SpeciesReference
stoichiometry: 1.0
species: 301416

759150
type: SpeciesReference
stoichiometry: 1.0
species: 300414

759162
type: SpeciesReference
stoichiometry: 1.0
species: 301036

759174
type: SpeciesReference
stoichiometry: 1.0
species: 301665

301665
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: tRNA_Leu_R

305032
type: LocalParameter
units: 756622
value: 0.0

305029
type: LocalParameter
value: 0.0

305026
type: LocalParameter
units: 756574
value: 999999.0

305025
type: LocalParameter
units: 756574
value: 0.0

300166
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Oxododecanoyl_CoA_C33H52N7O18P3S

301028
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: D_Lactate_C3H5O3

302345
type: Reaction
product: 769092
reactant: 769068
product: 769080
notes: Abbreviation: R_SHK3Dr EC Number: 1.1.1.25 SUBSYSTEM: Cofactors_ShikimateBiosynthesis Equation: M_3dhsk[c] + M_h[c] + M_nadph[c] <==> M_nadp[c] + M_skm[c] genes: proteins: GENE ASSOCIATION:
kinetic law: 769104
fast: false
reactant: 769044
name: shikimate_dehydrogenase
reactant: 769056
reversible: true

769092
type: SpeciesReference
stoichiometry: 1.0
species: 301543

301543
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: Shikimate_C7H9O5

769068
type: SpeciesReference
stoichiometry: 1.0
species: 301148

769080
type: SpeciesReference
stoichiometry: 1.0
species: 301142

306209
type: LocalParameter
units: 756622
value: 0.0

306208
type: LocalParameter
value: 0.0

306207
type: LocalParameter
units: 756574
value: 999999.0

306205
type: LocalParameter
units: 756574
value: -999999.0

769044
type: SpeciesReference
stoichiometry: 1.0
species: 300118

300118
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 3_Dehydroshikimate_C7H7O5

769056
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302424
type: Reaction
kinetic law: 771135
product: 771123
reactant: 771111
notes: Abbreviation: R_EX_ac_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_ac <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_ac_e_

306369
type: LocalParameter
units: 756622
value: 0.0

306368
type: LocalParameter
value: 0.0

306367
type: LocalParameter
units: 756574
value: 999999.0

306365
type: LocalParameter
units: 756574
value: -999999.0

771123
type: SpeciesReference
stoichiometry: 1.0
species: 301775

301775
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Acetate_C2H3O2

771111
type: SpeciesReference
stoichiometry: 1.0
species: 300294

303308
type: Reaction
product: 789487
name: lysophospholipase
notes: Abbreviation: R_LPLIPAL1G120pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpg120[c] + M_h2o[c] --> M_ddca[c] + M_g3pg[c] + M_h[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reversible: false
product: 789499
reactant: 789475
reactant: 789462
kinetic law: 789523
product: 789511
fast: false

789487
type: SpeciesReference
stoichiometry: 1.0
species: 300594

789499
type: SpeciesReference
stoichiometry: 1.0
species: 300777

789475
type: SpeciesReference
stoichiometry: 1.0
species: 300903

789462
type: SpeciesReference
stoichiometry: 1.0
species: 299984

307934
type: LocalParameter
units: 756622
value: 0.0

307932
type: LocalParameter
value: 0.0

307931
type: LocalParameter
units: 756574
value: 999999.0

307929
type: LocalParameter
units: 756574
value: 0.0

789511
type: SpeciesReference
stoichiometry: 1.0
species: 300911

302710
type: Reaction
kinetic law: 774742
product: 774730
reactant: 774717
notes: Abbreviation: R_EX_urea_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_urea <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_urea_e_

306879
type: LocalParameter
units: 756622
value: 0.0

306877
type: LocalParameter
value: 0.0

306876
type: LocalParameter
units: 756574
value: 999999.0

306874
type: LocalParameter
units: 756574
value: -999999.0

774730
type: SpeciesReference
stoichiometry: 1.0
species: 301974

301974
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Urea_CH4N2O

774717
type: SpeciesReference
stoichiometry: 1.0
species: 301735

302538
type: Reaction
kinetic law: 772589
product: 772577
reactant: 772564
notes: Abbreviation: R_EX_gsn_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_gsn <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_gsn_e_

306569
type: LocalParameter
units: 756622
value: 0.0

306568
type: LocalParameter
value: 0.0

306567
type: LocalParameter
units: 756574
value: 999999.0

306565
type: LocalParameter
units: 756574
value: -999999.0

772577
type: SpeciesReference
stoichiometry: 1.0
species: 301856

772564
type: SpeciesReference
stoichiometry: 1.0
species: 300871

300548
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Cytidine_C9H13N3O5

303962
type: Reaction
notes: Abbreviation: R_ASPCT EC Number: 2.1.3.2 SUBSYSTEM: Nucleotides_PyrimidineMetabolism ; AminoAcids_AsnAspMetabolism Equation: M_asp_L[c] + M[c] bp[c] --> M[c] basp[c] + M_h[c] + M_pi[c] genes: LOCUS:MAL13P1_221# proteins: GENE ASSOCIATION: (MAL13P1_221)
kinetic law: 804154
product: 804118
reactant: 804106
reactant: 804094
reversible: false
product: 804130
name: aspartate_carbamoyltransferase
fast: false
product: 804142

309165
type: LocalParameter
units: 756622
value: 0.0

309164
type: LocalParameter
value: 0.0

309162
type: LocalParameter
units: 756574
value: 999999.0

309161
type: LocalParameter
units: 756574
value: 0.0

804118
type: SpeciesReference
stoichiometry: 1.0
species: 300428

300428
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N_Carbamoyl_L_aspartate_C5H6N2O5

804106
type: SpeciesReference
stoichiometry: 1.0
species: 300430

804094
type: SpeciesReference
stoichiometry: 1.0
species: 300404

804130
type: SpeciesReference
stoichiometry: 1.0
species: 300911

804142
type: SpeciesReference
stoichiometry: 1.0
species: 301390

300688
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Deoxyuridine_C9H12N2O5

302223
type: Reaction
kinetic law: 765039
reversible: false
name: malate_dehydrogenase_(acceptor)
product: 765027
notes: Abbreviation: R_MDH2_mt EC Number: 1.1.99.16 SUBSYSTEM: Carbohydrates_PyruvateMetabolism Equation: M[m] al_L[m] + M_q8[m] --> M_oaa[m] + M_q8h2[m] genes: LOCUS:PFF0815w# proteins: GENE ASSOCIATION: (PFF0815w)
reactant: 765003
reactant: 764991
product: 765015
fast: false

305879
type: LocalParameter
units: 756622
value: 0.0

305876
type: LocalParameter
value: 0.0

305873
type: LocalParameter
units: 756574
value: 999999.0

305870
type: LocalParameter
units: 756574
value: 0.0

765027
type: SpeciesReference
stoichiometry: 1.0
species: 301505

765003
type: SpeciesReference
stoichiometry: 1.0
species: 301501

764991
type: SpeciesReference
stoichiometry: 1.0
species: 301068

765015
type: SpeciesReference
stoichiometry: 1.0
species: 301200

302843
type: Reaction
product: 778340
product: 778328
notes: Abbreviation: R_3OAS161_ap EC Number: 2.3.1.41 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_h[ap] + M[m] alACP[ap] + M_tdeACP[ap] --> M_3ocpalm9eACP[ap] + M_ACP[ap] + M[c] o2[ap] genes: LOCUS:PFB0505c# LOCUS:PFF1275c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFF1275c)
product: 778316
name: beta-ketoacyl-acyl-carrier-protein_synthase_I
reactant: 778279
reactant: 778304
reversible: false
fast: false
reactant: 778292
kinetic law: 778352

778340
type: SpeciesReference
stoichiometry: 1.0
species: 300512

778328
type: SpeciesReference
stoichiometry: 1.0
species: 300270

778316
type: SpeciesReference
stoichiometry: 1.0
species: 300160

778279
type: SpeciesReference
stoichiometry: 1.0
species: 300909

778304
type: SpeciesReference
stoichiometry: 1.0
species: 301593

301593
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935

778292
type: SpeciesReference
stoichiometry: 1.0
species: 301062

307108
type: LocalParameter
units: 756622
value: 0.0

307106
type: LocalParameter
value: 0.0

307105
type: LocalParameter
units: 756574
value: 999999.0

307104
type: LocalParameter
units: 756574
value: 0.0

300230
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Methyl_2_oxopentanoate_C6H9O3

303512
type: Reaction
product: 794407
fast: false
name: phosphatidylglycerophosphatase
reversible: false
reactant: 794383
product: 794395
notes: Abbreviation: R_PGPP140 EC Number: 3.1.3.27 SUBSYSTEM: Lipids_PhosphatidylethanolaminePhosphatidylserineMetabolism Equation: M_h2o[c] + M_pgp140[c] --> M_pg140[c] + M_pi[c] genes: proteins: GENE ASSOCIATION:
kinetic law: 794419
reactant: 794371

794407
type: SpeciesReference
stoichiometry: 1.0
species: 301390

794383
type: SpeciesReference
stoichiometry: 1.0
species: 301362

794395
type: SpeciesReference
stoichiometry: 1.0
species: 301348

308308
type: LocalParameter
units: 756622
value: 0.0

308306
type: LocalParameter
value: 0.0

308305
type: LocalParameter
units: 756574
value: 999999.0

308303
type: LocalParameter
units: 756574
value: 0.0

794371
type: SpeciesReference
stoichiometry: 1.0
species: 300903

304073
type: Reaction
name: R_AKGMAL
notes: Abbreviation: R_AKGMAL EC Number: SUBSYSTEM: Transport Equation: M_akg[c] + M[m] al_L[e] <==> M[m] al_L[c] + M_akg[e] genes: proteins: GENE ASSOCIATION:
product: 806612
reactant: 806576
product: 806600
fast: false
reversible: true
kinetic law: 806624
reactant: 806588

806612
type: SpeciesReference
stoichiometry: 1.0
species: 300348

806576
type: SpeciesReference
stoichiometry: 1.0
species: 300346

806600
type: SpeciesReference
stoichiometry: 1.0
species: 301064

301064
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: L_Malate_C4H4O5

309369
type: LocalParameter
units: 756622
value: 0.0

309367
type: LocalParameter
value: 0.0

309366
type: LocalParameter
units: 756574
value: 999999.0

309364
type: LocalParameter
units: 756574
value: -999999.0

806588
type: SpeciesReference
stoichiometry: 1.0
species: 301066

303626
type: Reaction
product: 796940
name: lysophospholipase
reversible: false
fast: false
reactant: 796916
notes: Abbreviation: R_LPLIPAL2ATE180 EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_2agpe180[c] + M_pg180[c] --> M[ap] g180[c] + M_g3pe[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
reactant: 796928
product: 796952
kinetic law: 796964

796940
type: SpeciesReference
stoichiometry: 1.0
species: 300386

300386
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: acyl_phosphatidylglycerol_n_C180_C60H116O11P

796916
type: SpeciesReference
stoichiometry: 1.0
species: 300040

796928
type: SpeciesReference
stoichiometry: 1.0
species: 301356

796952
type: SpeciesReference
stoichiometry: 1.0
species: 300775

308517
type: LocalParameter
units: 756622
value: 0.0

308515
type: LocalParameter
value: 0.0

308514
type: LocalParameter
units: 756574
value: 999999.0

308512
type: LocalParameter
units: 756574
value: 0.0

302356
type: Reaction
notes: Abbreviation: R_THMDP EC Number: 3.1.3.2 SUBSYSTEM: Cofactors_RiboflavinMetabolism Equation: (2.0) M_h2o[c] + M_thmpp[c] --> M_h[c] + (2.0) M_pi[c] + M_thm[c] genes: LOCUS:PFI0880c# proteins: GENE ASSOCIATION: (PFI0880c)
name: acid_phosphatase
product: 769430
reversible: false
product: 769418
reactant: 769393
kinetic law: 769454
fast: false
product: 769442
reactant: 769405

769430
type: SpeciesReference
stoichiometry: 2.0
species: 301390

769418
type: SpeciesReference
stoichiometry: 1.0
species: 300911

769393
type: SpeciesReference
stoichiometry: 2.0
species: 300903

306234
type: LocalParameter
units: 756622
value: 0.0

306233
type: LocalParameter
value: 0.0

306232
type: LocalParameter
units: 756574
value: 999999.0

306230
type: LocalParameter
units: 756574
value: 0.0

769442
type: SpeciesReference
stoichiometry: 1.0
species: 301611

769405
type: SpeciesReference
stoichiometry: 1.0
species: 301617

301450
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

301854
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Glycerol_C3H8O3

304118
type: Reaction
kinetic law: 807370
reactant: 807322
product: 807358
reactant: 807334
name: R_GCHOLAt
fast: false
reversible: true
product: 807346
notes: Abbreviation: R_GCHOLAt EC Number: SUBSYSTEM: Transport Equation: M_gchola[e] + M_hco3[c] <==> M_gchola[c] + M_hco3[e] genes: proteins: GENE ASSOCIATION:

309451
type: LocalParameter
units: 756622
value: 0.0

309450
type: LocalParameter
value: 0.0

309448
type: LocalParameter
units: 756574
value: 999999.0

309447
type: LocalParameter
units: 756574
value: -999999.0

807322
type: SpeciesReference
stoichiometry: 1.0
species: 300799

807358
type: SpeciesReference
stoichiometry: 1.0
species: 300925

807334
type: SpeciesReference
stoichiometry: 1.0
species: 300923

807346
type: SpeciesReference
stoichiometry: 1.0
species: 300797

300797
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: lycocholate_C26H43NO6

300102
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 2_tetradecanoyl_sn_glycerol_3_phosphate_C17H34O7P1

304607
type: Reaction
kinetic law: 814974
product: 814962
reactant: 814950
notes: Abbreviation: R_3MOPtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_3mop[m] <==> M_3mop[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_3MOPtmt

310348
type: LocalParameter
units: 756622
value: 0.0

310346
type: LocalParameter
value: 0.0

310345
type: LocalParameter
units: 756574
value: 999999.0

310343
type: LocalParameter
units: 756574
value: -999999.0

814962
type: SpeciesReference
stoichiometry: 1.0
species: 300152

814950
type: SpeciesReference
stoichiometry: 1.0
species: 300154

303032
type: Reaction
name: beta-ketoacyl-acyl-carrier-protein_synthase_III
reactant: 783087
product: 783099
fast: false
reactant: 783075
product: 783123
kinetic law: 783135
reactant: 783062
reversible: false
notes: Abbreviation: R_KAS15_ap EC Number: 2.3.1.180 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_accoa[ap] + M_h[ap] + M[m] alACP[ap] --> M_actACP[ap] + M[c] o2[ap] + M[c] oa[ap] genes: LOCUS:PFB0505c# proteins: GENE ASSOCIATION: (PFB0505c)
product: 783111

783087
type: SpeciesReference
stoichiometry: 1.0
species: 301062

783099
type: SpeciesReference
stoichiometry: 1.0
species: 300320

783075
type: SpeciesReference
stoichiometry: 1.0
species: 300909

783123
type: SpeciesReference
stoichiometry: 1.0
species: 300520

307436
type: LocalParameter
units: 756622
value: 0.0

307435
type: LocalParameter
value: 0.0

307433
type: LocalParameter
units: 756574
value: 999999.0

307432
type: LocalParameter
units: 756574
value: 0.0

783062
type: SpeciesReference
stoichiometry: 1.0
species: 300300

783111
type: SpeciesReference
stoichiometry: 1.0
species: 300512

302183
type: Reaction
kinetic law: 763808
product: 763796
reactant: 763784
notes: Abbreviation: R_PMANM EC Number: 5.4.2.8 SUBSYSTEM: Carbohydrates_MannoseFructoseMetabolism Equation: M[m] an1p[c] <==> M[m] an6p[c] genes: LOCUS:PF10_0169# proteins: GENE ASSOCIATION: (PF10_0169)
fast: false
reversible: true
name: Phosphomannomutase

305681
type: LocalParameter
units: 756622
value: 0.0

305680
type: LocalParameter
value: 0.0

305646
type: LocalParameter
units: 756574
value: 999999.0

305643
type: LocalParameter
units: 756574
value: -999999.0

763796
type: SpeciesReference
stoichiometry: 1.0
species: 301078

763784
type: SpeciesReference
stoichiometry: 1.0
species: 301076

300737
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: N_Formylmethionyl_tRNA_C6H9NO2SR

302692
type: Reaction
kinetic law: 774523
product: 774511
reactant: 774499
notes: Abbreviation: R_EX_thymd_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_thymd <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_thymd_e_

306847
type: LocalParameter
units: 756622
value: 0.0

306845
type: LocalParameter
value: 0.0

306844
type: LocalParameter
units: 756574
value: 999999.0

306842
type: LocalParameter
units: 756574
value: -999999.0

774511
type: SpeciesReference
stoichiometry: 1.0
species: 301962

301962
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Thymidine_C10H14N2O5

774499
type: SpeciesReference
stoichiometry: 1.0
species: 301627

301930
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L_Phenylalanine_C9H11NO2

302117
type: Reaction
product: 761804
notes: Abbreviation: R_ACGAM6PS EC Number: 2.3.1.4 SUBSYSTEM: Carbohydrates_AminosugarsMetabolism Equation: M_accoa[c] + M_gam6p[c] <==> M_acgam6p[c] + M[c] oa[c] + M_h[c] genes: proteins: GENE ASSOCIATION:
reactant: 761768
name: glucosamine-phosphate_N-acetyltransferase
product: 761792
kinetic law: 761816
fast: false
product: 761780
reversible: true
reactant: 761756

761804
type: SpeciesReference
stoichiometry: 1.0
species: 300911

761768
type: SpeciesReference
stoichiometry: 1.0
species: 300789

761792
type: SpeciesReference
stoichiometry: 1.0
species: 300522

305322
type: LocalParameter
units: 756622
value: 0.0

305319
type: LocalParameter
value: 0.0

305316
type: LocalParameter
units: 756574
value: 999999.0

305313
type: LocalParameter
units: 756574
value: -999999.0

761780
type: SpeciesReference
stoichiometry: 1.0
species: 300308

761756
type: SpeciesReference
stoichiometry: 1.0
species: 300302

304454
type: Reaction
kinetic law: 812549
product: 812536
reactant: 812524
notes: Abbreviation: R_NADPHtap EC Number: SUBSYSTEM: Transport_AP Equation: M_nadph[ap] <==> M_nadph[c] genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_NADPHtap

310067
type: LocalParameter
units: 756622
value: 0.0

310066
type: LocalParameter
value: 0.0

310064
type: LocalParameter
units: 756574
value: 999999.0

310063
type: LocalParameter
units: 756574
value: -999999.0

812536
type: SpeciesReference
stoichiometry: 1.0
species: 301148

812524
type: SpeciesReference
stoichiometry: 1.0
species: 301146

302950
type: Reaction
product: 781141
product: 781129
product: 781117
name: fatty-acid_synthase
notes: Abbreviation: R_FAS120_ap EC Number: 2.3.1.85 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_dca[ap] + (3.0) M_h[ap] + M[m] alcoa[ap] + (2.0) M_nadph[ap] --> M[c] o2[ap] + M[c] oa[ap] + M_ddca[ap] + M_h2o[ap] + (2.0) M_nadp[ap] genes: LOCUS:PFB0505c# LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFI1125c)
reactant: 781068
reactant: 781080
reactant: 781093
kinetic law: 781177
fast: false
product: 781165
product: 781153
reversible: false
reactant: 781105

781141
type: SpeciesReference
stoichiometry: 1.0
species: 300592

300592
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Dodecanoate_n_C120_C12H23O2

781129
type: SpeciesReference
stoichiometry: 1.0
species: 300520

781117
type: SpeciesReference
stoichiometry: 1.0
species: 300512

781068
type: SpeciesReference
stoichiometry: 1.0
species: 300566

300566
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: Decanoate_n_C100_C10H19O2

781080
type: SpeciesReference
stoichiometry: 3.0
species: 300909

781093
type: SpeciesReference
stoichiometry: 1.0
species: 301070

307292
type: LocalParameter
units: 756622
value: 0.0

307291
type: LocalParameter
value: 0.0

307289
type: LocalParameter
units: 756574
value: 999999.0

307288
type: LocalParameter
units: 756574
value: 0.0

781165
type: SpeciesReference
stoichiometry: 2.0
species: 301140

781153
type: SpeciesReference
stoichiometry: 1.0
species: 300901

781105
type: SpeciesReference
stoichiometry: 2.0
species: 301146

303299
type: Reaction
product: 789196
reversible: false
fast: false
product: 789220
reactant: 789172
kinetic law: 789232
name: lysophospholipase
reactant: 789184
notes: Abbreviation: R_LPLIPAL1E160pp EC Number: 3.1.1.5 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_1agpe160[c] + M_h2o[c] --> M_g3pe[c] + M_h[c] + M_hdca[c] genes: LOCUS:PF07_0005# LOCUS:PF07_0040# LOCUS:PF10_0379# LOCUS:PF14_0017# LOCUS:PF14_0737# LOCUS:PF14_0738# proteins: GENE ASSOCIATION: (PF07_0005) or (PF07_0040) or (PF10_0379) or (PF14_0017) or (PF14_0737) or (PF14_0738)
product: 789208

789196
type: SpeciesReference
stoichiometry: 1.0
species: 300775

789220
type: SpeciesReference
stoichiometry: 1.0
species: 300933

789172
type: SpeciesReference
stoichiometry: 1.0
species: 299976

307912
type: LocalParameter
units: 756622
value: 0.0

307910
type: LocalParameter
value: 0.0

307909
type: LocalParameter
units: 756574
value: 999999.0

307907
type: LocalParameter
units: 756574
value: 0.0

789184
type: SpeciesReference
stoichiometry: 1.0
species: 300903

789208
type: SpeciesReference
stoichiometry: 1.0
species: 300911

301184
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299935
name: O2_O2

302061
type: Reaction
name: 4-acetamidobutyrate_deacetylase
kinetic law: 759682
reversible: false
product: 759657
reactant: 759633
fast: false
notes: Abbreviation: R_AABTN EC Number: 3.5.1.63 SUBSYSTEM: AminoAcids_LysMetabolism Equation: M_4aabutn[c] + M_h2o[c] --> M_4abut[c] + M_ac[c] genes: proteins: GENE ASSOCIATION:
product: 759670
reactant: 759645

305086
type: LocalParameter
units: 756622
value: 0.0

305083
type: LocalParameter
value: 0.0

305080
type: LocalParameter
units: 756574
value: 999999.0

305077
type: LocalParameter
units: 756574
value: 0.0

759657
type: SpeciesReference
stoichiometry: 1.0
species: 300200

759633
type: SpeciesReference
stoichiometry: 1.0
species: 300198

300198
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 4_Acetamidobutanoate_C6H10NO3

759670
type: SpeciesReference
stoichiometry: 1.0
species: 300292

759645
type: SpeciesReference
stoichiometry: 1.0
species: 300903

300765
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: alpha-D-Glucosyl)3-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine

302570
type: Reaction
kinetic law: 773032
product: 773020
reactant: 773007
notes: Abbreviation: R_EX_hxan_e_ EC Number: SUBSYSTEM: Exchange Equation: [e] : M_hxan <==> genes: proteins: GENE ASSOCIATION:
fast: false
reversible: true
name: R_EX_hxan_e_

306629
type: LocalParameter
units: 756622
value: 0.0

306628
type: LocalParameter
value: 0.0

306627
type: LocalParameter
units: 756574
value: 999999.0

306625
type: LocalParameter
units: 756574
value: -999999.0

773020
type: SpeciesReference
stoichiometry: 1.0
species: 301880

301880
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: Hypoxanthine_C5H4N4O

773007
type: SpeciesReference
stoichiometry: 1.0
species: 300986

301108
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: 1D-myo-Inositol 3,4-bisphosphate_C6H10O12P2

304253
type: Reaction
fast: false
reactant: 809547
kinetic law: 809583
reactant: 809535
notes: Abbreviation: R_CYSTGLUex EC Number: SUBSYSTEM: Transport_aa Equation: M_Lcystin[e] + M_glu_L[c] --> M_Lcystin[c] + M_glu_L[e] genes: LOCUS:PFF1430c# LOCUS:PFL0420w# LOCUS:PFL1515c# LOCUS:PFB0435c# LOCUS:PFE0775c# LOCUS:PF11_0334# proteins: GENE ASSOCIATION: (PFF1430c) or (PFL0420w) or (PFL1515c) or (PFB0435c) or (PFE0775c) or (PF11_0334)
name: R_CYSTGLUex
product: 809559
reversible: false
product: 809571

809547
type: SpeciesReference
stoichiometry: 1.0
species: 300829

309699
type: LocalParameter
units: 756622
value: 0.0

309697
type: LocalParameter
value: 0.0

309696
type: LocalParameter
units: 756574
value: 999999.0

309694
type: LocalParameter
units: 756574
value: 0.0

809535
type: SpeciesReference
stoichiometry: 1.0
species: 300278

300278
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: L-Cystine_C6H12N2O4S2

809559
type: SpeciesReference
stoichiometry: 1.0
species: 300276

809571
type: SpeciesReference
stoichiometry: 1.0
species: 300831

300863
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

303992
type: Reaction
reactant: 804799
reversible: false
name: NADH_dehydrogenase_(ubiquinone)
product: 804835
notes: Abbreviation: R_NADH5 EC Number: 1.6.5.3 SUBSYSTEM: Others_MitochondrialElectronFlow Equation: M_h[c] + M_nadh[c] + M_q8[c] --> M_nad[c] + M_q8h2[c] genes: LOCUS:PFI0735c# proteins: GENE ASSOCIATION: (PFI0735c)
fast: false
reactant: 804823
reactant: 804811
kinetic law: 804859
product: 804847

804799
type: SpeciesReference
stoichiometry: 1.0
species: 300911

804835
type: SpeciesReference
stoichiometry: 1.0
species: 301130

804823
type: SpeciesReference
stoichiometry: 1.0
species: 301499

804811
type: SpeciesReference
stoichiometry: 1.0
species: 301136

309220
type: LocalParameter
units: 756622
value: 0.0

309219
type: LocalParameter
value: 0.0

309217
type: LocalParameter
units: 756574
value: 999999.0

309216
type: LocalParameter
units: 756574
value: 0.0

804847
type: SpeciesReference
stoichiometry: 1.0
species: 301503

304598
type: Reaction
fast: false
reversible: false
product: 814804
kinetic law: 814840
product: 814828
name: R_ATPtmt
reactant: 814792
reactant: 814780
product: 814816
notes: Abbreviation: R_ATPtmt EC Number: SUBSYSTEM: Transport_MT Equation: M_atp[m] + M_h2o[m] --> M_h[c] + M_adp[m] + M_pi[m] genes: LOCUS:PF11_0485# LOCUS:PFB0795w# LOCUS:PFL1725w# LOCUS:MAL13P1_47# LOCUS:PF13_0061# LOCUS:MAL7P1_75# LOCUS:MAL7P1_340# proteins: GENE ASSOCIATION: (PF11_0485) or (PFB0795w) or (PFL1725w) or (MAL13P1_47) or (PF13_0061) or (MAL7P1_75) or (MAL7P1_340)

814804
type: SpeciesReference
stoichiometry: 1.0
species: 300911

310331
type: LocalParameter
units: 756622
value: 0.0

310330
type: LocalParameter
value: 0.0

310328
type: LocalParameter
units: 756574
value: 999999.0

310327
type: LocalParameter
units: 756574
value: 0.0

814828
type: SpeciesReference
stoichiometry: 1.0
species: 301394

814792
type: SpeciesReference
stoichiometry: 1.0
species: 300907

814780
type: SpeciesReference
stoichiometry: 1.0
species: 300416

814816
type: SpeciesReference
stoichiometry: 1.0
species: 300334

301968
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931
name: tetradecenoate_n_C141_C14H25O2

303713
type: Reaction
reactant: 798678
name: AMP_deaminase
reversible: false
notes: Abbreviation: R_AMPDA EC Number: 3.5.4.6 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_amp[c] + M_h[c] + M_h2o[c] --> M_imp[c] + M_nh4[c] genes: LOCUS:MAL13P1_146# proteins: GENE ASSOCIATION: (MAL13P1_146)
fast: false
reactant: 798690
product: 798702
reactant: 798666
product: 798714
kinetic law: 798726

798678
type: SpeciesReference
stoichiometry: 1.0
species: 300911

798690
type: SpeciesReference
stoichiometry: 1.0
species: 300903

798702
type: SpeciesReference
stoichiometry: 1.0
species: 301006

798666
type: SpeciesReference
stoichiometry: 1.0
species: 300370

798714
type: SpeciesReference
stoichiometry: 1.0
species: 301160

308709
type: LocalParameter
units: 756622
value: 0.0

308707
type: LocalParameter
value: 0.0

308706
type: LocalParameter
units: 756574
value: 999999.0

308704
type: LocalParameter
units: 756574
value: 0.0

303416
type: Reaction
reactant: 792073
product: 792097
product: 792109
notes: Abbreviation: R_PLIPA2E120pp EC Number: 3.1.1.4 SUBSYSTEM: Lipids_PhosphatidylcholineMetabolism ; Lipids_PhosphatidyletanolaminePhosphatidylserineMetabolism ; Lipids_UtilizationPhospholipids Equation: M_h2o[c] + M_pe120[c] --> M_1agpe120[c] + M_ddca[c] + M_h[c] genes: LOCUS:PFB0410c# proteins: GENE ASSOCIATION: (PFB0410c)
name: phospholipase_A2
reactant: 792085
reversible: false
kinetic law: 792133
product: 792121
fast: false

792073
type: SpeciesReference
stoichiometry: 1.0
species: 300903

792097
type: SpeciesReference
stoichiometry: 1.0
species: 299970

792109
type: SpeciesReference
stoichiometry: 1.0
species: 300594

792085
type: SpeciesReference
stoichiometry: 1.0
species: 301306

301306
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929
name: phosphatidylethanolamine_didodecanoyl_n_C120_C29H58N1O8P1

308132
type: LocalParameter
units: 756622
value: 0.0

308130
type: LocalParameter
value: 0.0

308129
type: LocalParameter
units: 756574
value: 999999.0

308127
type: LocalParameter
units: 756574
value: 0.0

792121
type: SpeciesReference
stoichiometry: 1.0
species: 300911

303059
type: Reaction
kinetic law: 783644
product: 783632
reactant: 783619
notes: Abbreviation: R_T2DECAI_ap EC Number: 4.2.1.60 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: M_tdec2eACP[ap] <==> M[c] dec3eACP[ap] genes: LOCUS:PF13_0128# proteins: GENE ASSOCIATION: (PF13_0128)
fast: false
reversible: true
name: 3-Hydroxydecanoyl-[acyl-carrier-protein]_dehydratase

307482
type: LocalParameter
units: 756622
value: 0.0

307480
type: LocalParameter
value: 0.0

307479
type: LocalParameter
units: 756574
value: 999999.0

307477
type: LocalParameter
units: 756574
value: -999999.0

783632
type: SpeciesReference
stoichiometry: 1.0
species: 300434

783619
type: SpeciesReference
stoichiometry: 1.0
species: 301595

304130
type: Reaction
kinetic law: 807514
product: 807502
reactant: 807490
notes: Abbreviation: R_GTHRDti EC Number: SUBSYSTEM: Transport Equation: M_gthrd[e] <==> M_gthrd[c] genes: LOCUS:PFA0590w# proteins: GENE ASSOCIATION: (PFA0590w)
fast: false
reversible: true
name: R_GTHRDti

309473
type: LocalParameter
units: 756622
value: 0.0

309472
type: LocalParameter
value: 0.0

309470
type: LocalParameter
units: 756574
value: 999999.0

309469
type: LocalParameter
units: 756574
value: -999999.0

807502
type: SpeciesReference
stoichiometry: 1.0
species: 300879

807490
type: SpeciesReference
stoichiometry: 1.0
species: 300881

303101
type: Reaction
product: 784511
notes: Abbreviation: R_PIN3K EC Number: 2.7.1.137 SUBSYSTEM: Lipids_InositolPhosphateMetabolism Equation: M_atp[c] + (0.01) M_ptd1ino[c] --> M_adp[c] + M_h[c] + (0.01) M_ptd3ino[c] genes: LOCUS:PFE0765w# proteins: GENE ASSOCIATION: (PFE0765w)
product: 784499
reactant: 784487
fast: false
name: phosphatidylinositol_3-kinase
kinetic law: 784536
product: 784523
reversible: false
reactant: 784475

784511
type: SpeciesReference
stoichiometry: 1.0
species: 300911

784499
type: SpeciesReference
stoichiometry: 1.0
species: 300332

784487
type: SpeciesReference
stoichiometry: 0.01
species: 301464

307555
type: LocalParameter
units: 756622
value: 0.0

307553
type: LocalParameter
value: 0.0

307552
type: LocalParameter
units: 756574
value: 999999.0

307550
type: LocalParameter
units: 756574
value: 0.0

784523
type: SpeciesReference
stoichiometry: 0.01
species: 301469

301469
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299929

784475
type: SpeciesReference
stoichiometry: 1.0
species: 300414

302959
type: Reaction
name: fatty-acid_synthase
product: 781527
reactant: 781467
product: 781479
product: 781503
kinetic law: 781539
reactant: 781443
notes: Abbreviation: R_FAS180_ap EC Number: 2.3.1.85 SUBSYSTEM: Lipids_FattyAcidSynthesis Equation: (3.0) M_h[ap] + M_hdca[ap] + M[m] alcoa[ap] + (2.0) M_nadph[ap] --> M[c] o2[ap] + M[c] oa[ap] + M_h2o[ap] + (2.0) M_nadp[ap] + M_ocdca[ap] genes: LOCUS:PFB0505c# LOCUS:PFI1125c# proteins: GENE ASSOCIATION: (PFB0505c) or (PFI1125c)
reactant: 781455
reversible: false
product: 781491
product: 781515
reactant: 781431
fast: false

781527
type: SpeciesReference
stoichiometry: 1.0
species: 301212

781467
type: SpeciesReference
stoichiometry: 2.0
species: 301146

781479
type: SpeciesReference
stoichiometry: 1.0
species: 300512

781503
type: SpeciesReference
stoichiometry: 1.0
species: 300901

307307
type: LocalParameter
units: 756622
value: 0.0

307306
type: LocalParameter
value: 0.0

307304
type: LocalParameter
units: 756574
value: 999999.0

307303
type: LocalParameter
units: 756574
value: 0.0

781443
type: SpeciesReference
stoichiometry: 1.0
species: 300931

781455
type: SpeciesReference
stoichiometry: 1.0
species: 301070

781491
type: SpeciesReference
stoichiometry: 1.0
species: 300520

781515
type: SpeciesReference
stoichiometry: 2.0
species: 301140

781431
type: SpeciesReference
stoichiometry: 3.0
species: 300909

303791
type: Reaction
reversible: false
notes: Abbreviation: R_NTD5 EC Number: 3.1.3.5 SUBSYSTEM: Nucleotides_PurineMetabolism Equation: M_dtmp[c] + M_h2o[c] --> M_pi[c] + M_thymd[c] genes: LOCUS:PFL0305c# proteins: GENE ASSOCIATION: (PFL0305c)
product: 800353
reactant: 800329
reactant: 800317
fast: false
product: 800341
name: 5'-nucleotidase
kinetic law: 800365

800353
type: SpeciesReference
stoichiometry: 1.0
species: 301625

800329
type: SpeciesReference
stoichiometry: 1.0
species: 300903

800317
type: SpeciesReference
stoichiometry: 1.0
species: 300676

800341
type: SpeciesReference
stoichiometry: 1.0
species: 301390

308852
type: LocalParameter
units: 756622
value: 0.0

308850
type: LocalParameter
value: 0.0

308849
type: LocalParameter
units: 756574
value: 999999.0

308847
type: LocalParameter
units: 756574
value: 0.0

302089
type: Reaction
product: 760682
fast: false
reactant: 760657
product: 760669
reactant: 760645
kinetic law: 760706
reversible: false
name: nitrate_reductase_(NADH)
product: 760694
notes: Abbreviation: R_1_7_1_1_mt EC Number: 1.7.1.1 SUBSYSTEM: AminoAcids_NitrogenMetabolism Equation: M_h[m] + M_no3[m] + M_nadh[m] --> M_h2o[m] + M_no2[m] + M_nad[m] genes: LOCUS:PF13_0353# proteins: GENE ASSOCIATION: (PF13_0353)
reactant: 760633

760682
type: SpeciesReference
stoichiometry: 1.0
species: 301172

301172
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Nitrite_NO2

760657
type: SpeciesReference
stoichiometry: 1.0
species: 301138

760669
type: SpeciesReference
stoichiometry: 1.0
species: 300907

760645
type: SpeciesReference
stoichiometry: 1.0
species: 301178

301178
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: Nitrate_NO3

305198
type: LocalParameter
units: 756622
value: 0.0

305195
type: LocalParameter
value: 0.0

305192
type: LocalParameter
units: 756574
value: 999999.0

305191
type: LocalParameter
units: 756574
value: 0.0

760694
type: SpeciesReference
stoichiometry: 1.0
species: 301132

760633
type: SpeciesReference
stoichiometry: 1.0
species: 300915

302385
type: Reaction
kinetic law: 770265
product: 770253
reactant: 770241
reactant: 770229
notes: Abbreviation: R_OMPHHX_mt EC Number: SUBSYSTEM: Cofactors_UbiquinoneMetabolism Equation: M_2omph[m] + (0.5) M_o2[m] --> M_2ombzl[m] genes: LOCUS:PF08_0068# proteins: GENE ASSOCIATION: (PF08_0068)
fast: false
reversible: false
name: R_OMPHHX_mt

306294
type: LocalParameter
units: 756622
value: 0.0

306293
type: LocalParameter
value: 0.0

306292
type: LocalParameter
units: 756574
value: 999999.0

306290
type: LocalParameter
units: 756574
value: 0.0

770253
type: SpeciesReference
stoichiometry: 1.0
species: 300086

300086
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299933
name: 2_Octaprenyl_6_methoxy_1_4_benzoquinol_C47H72O3

770241
type: SpeciesReference
stoichiometry: 0.5
species: 301190

770229
type: SpeciesReference
stoichiometry: 1.0
species: 300092

302761
type: Reaction
product: 776204
fast: false
product: 776253
kinetic law: 776265
product: 776228
product: 776240
name: R_lipid9
product: 776179
product: 776192
reversible: true
notes: Abbreviation: R_lipid9 EC Number: SUBSYSTEM: Lipids Equation: M[c] dpdag[e] <==> M[c] dpdddecg[e] + M[c] dpdtdecg[e] + M[c] dpdtdec7eg[e] + M[c] dpdhdecg[e] + M[c] dpdhdec9eg[e] + M[c] dpdodecg[e] + M[c] dpdodec11eg[e] genes: proteins: GENE ASSOCIATION:
product: 776216
reactant: 776166

776204
type: SpeciesReference
stoichiometry: 1.0
species: 300466

300466
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931

776253
type: SpeciesReference
stoichiometry: 1.0
species: 300458

300458
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: NaN
in compartment: 299931