MODEL1006230041
type: SBMLModel
units def: 401580
parameter: 362368
parameter: 362296
time units: 402009
parameter: 362236
parameter: 362307
parameter: 362189
parameter: 362473
parameter: 362455
rule: 362077
rule: 362081
parameter: 362402
parameter: 362399
parameter: 362457
parameter: 362285
parameter: 362225
parameter: 362322
parameter: 362227
rule: 362111
parameter: 362428
parameter: 362419
parameter: 362454
rule: 362176
notes: This a model from the article: An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements. Cloutier M, Bolger FB, Lowry JP, Wellstead P. J Comput Neurosci 2009 Dec;27(3):391-414 19396534 , Abstract: An integrative, systems approach to the modelling of brain energy metabolism is presented. Mechanisms such as glutamate cycling between neurons and astrocytes and glycogen storage in astrocytes have been implemented. A unique feature of the model is its calibration using in vivo data of brain glucose and lactate from freely moving rats under various stimuli. The model has been used to perform simulated perturbation experiments that show that glycogen breakdown in astrocytes is significantly activated during sensory (tail pinch) stimulation. This mechanism provides an additional input of energy substrate during high consumption phases. By way of validation, data from the perfusion of 50 microM propranolol in the rat brain was compared with the model outputs. Propranolol affects the glucose dynamics during stimulation, and this was accurately reproduced in the model by a reduction in the glycogen breakdown in astrocytes. The model's predictive capacity was verified by using data from a sensory stimulation (restraint) that was not used for model calibration. Finally, a sensitivity analysis was conducted on the model parameters, this showed that the control of energy metabolism and transport processes are critical in the metabolic behaviour of cerebral tissue. This model was taken from the CellML repository and automatically converted to SBML. The original model was: Cloutier M, Bolger FB, Lowry JP, Wellstead P. (2009) - version=1.0 The original CellML model was created by: Catherine Lloyd c.lloyd@auckland.ac.nz The University of Auckland This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team. To the extent possible un…
parameter: 362306
rule: 362180
substance units: 178797
parameter: 362438
length unit: 076409
parameter: 362308
parameter: 362408
rule: 362076
parameter: 362367
parameter: 362443
rule: 362080
parameter: 362217
rule: 362187
parameter: 362331
rule: 362124
parameter: 362427
rule: 362119
units def: 401616
parameter: 362429
rule: 362135
rule: 362157
rule: 362100
parameter: 362400
parameter: 362339
rule: 362154
rule: 362172
parameter: 362385
parameter: 362415
units def: 401739
parameter: 362271
parameter: 362309
parameter: 362390
parameter: 362452
parameter: 362417
units def: 402009
rule: 362097
parameter: 362374
parameter: 362332
rule: 362120
parameter: 362242
parameter: 362200
parameter: 362316
rule: 362115
parameter: 362384
parameter: 362252
rule: 362131
parameter: 362293
rule: 362067
rule: 362071
units def: 401861
curated: false
parameter: 362295
parameter: 362235
parameter: 362301
parameter: 362241

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unit: 401592
name: per_mM

401604
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scale: 0
multipler: 1.0
kind: LITRE

401592
type: SBMLUnit
exponent: -1.0
scale: -3
multipler: 1.0
kind: MOLE

362368
type: Parameter
constant: true
value: 5.0
name: PCrn_tot

362296
type: Parameter
constant: false
value: NaN
name: Vg_pfk

402009
type: SBMLUnitsDef
unit: 402021
name: time

402021
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND

362236
type: Parameter
constant: false
value: NaN
name: Vn_leak_Na

362307
type: Parameter
constant: true
value: 0.54682
name: krg_ldh

362189
type: Parameter
constant: false
value: 15.533
name: NAn

362473
type: Parameter
constant: false
value: NaN
name: unitstepSB2

362455
type: Parameter
constant: true
value: 0.064
name: dHb0

362402
type: Parameter
constant: true
value: 0.089733
name: Ko2

362399
type: Parameter
constant: true
value: 0.4243
name: Km_pump

362457
type: Parameter
constant: true
value: 1.0
name: stim

362285
type: Parameter
constant: true
value: 0.038089
name: Vm_eg_GLC

362225
type: Parameter
constant: false
value: 0.3986
name: LACe

362322
type: Parameter
constant: true
value: 0.02073
name: krg_ck

362227
type: Parameter
constant: false
value: 7.4201
name: O2c

362428
type: Parameter
constant: true
value: 0.45
name: Vn

362419
type: Parameter
constant: true
value: 0.01222
name: Rcn

362454
type: Parameter
constant: true
value: 0.43
name: k3

362306
type: Parameter
constant: true
value: 6.2613
name: kfg_ldh

362438
type: Parameter
constant: true
value: 1.0
name: KO1

362308
type: Parameter
constant: false
value: NaN
name: Vg_mito

362408
type: Parameter
constant: true
value: 8.34
name: O2a

362367
type: Parameter
constant: false
value: NaN
name: CRn

362443
type: Parameter
constant: true
value: 1.0
name: KO3

362217
type: Parameter
constant: false
value: 2.24
name: ATPg

362331
type: Parameter
constant: true
value: 8.4568
name: Km_ce_GLC

362427
type: Parameter
constant: true
value: 96500.0
name: F

401616
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401628
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362429
type: Parameter
constant: true
value: 0.6
name: G6P_inh_hk

362400
type: Parameter
constant: true
value: 2.7
name: nh_O2

362339
type: Parameter
constant: false
value: NaN
name: Vgc_CO2

362385
type: Parameter
constant: false
value: NaN
name: unitstepSB

362415
type: Parameter
constant: true
value: 1.8
name: Rng

401739
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unit: 401762
unit: 401750
name: cm_per_mM_per_s

401787
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401750
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multipler: 1.0
kind: METRE

362271
type: Parameter
constant: false
value: NaN
name: Vn_ck

362309
type: Parameter
constant: true
value: 0.008454
name: Vmax_g_mito

362390
type: Parameter
constant: true
value: 0.00107
name: Km_ADP

362452
type: Parameter
constant: true
value: 2.22
name: k1

362417
type: Parameter
constant: true
value: 0.8
name: Reg

362374
type: Parameter
constant: false
value: NaN
name: u_n

362332
type: Parameter
constant: true
value: 0.0489
name: Vm_ce_GLC

362242
type: Parameter
constant: true
value: 5.32
name: Km_en_GLC

362200
type: Parameter
constant: false
value: 0.0319
name: NADHn

362316
type: Parameter
constant: true
value: 2.1856E-4
name: Vmax_gc_LAC

362384
type: Parameter
constant: false
value: NaN
name: unitpulseSB

362252
type: Parameter
constant: true
value: 0.55783
name: kn_pfk

362293
type: Parameter
constant: true
value: 0.5
name: Vmaxf_g_pgi

401861
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unit: 401873
name: L_per_millimole

401885
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401873
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multipler: 1.0
kind: LITRE

362295
type: Parameter
constant: true
value: 0.45
name: Vmaxr_g_pgi

362235
type: Parameter
constant: false
value: 0.0218
name: dHb

362301
type: Parameter
constant: false
value: NaN
name: Vg_pk

362241
type: Parameter
constant: false
value: NaN
name: V_en_GLC

362393
type: Parameter
constant: true
value: 0.105
name: Km_GLC

362398
type: Parameter
constant: true
value: 0.18
name: Km_F6P_pfk

362243
type: Parameter
constant: true
value: 0.50417
name: Vm_en_GLC

362266
type: Parameter
constant: true
value: 0.1978
name: Vmax_ne_LAC

362292
type: Parameter
constant: false
value: NaN
name: Vg_pgi

362422
type: Parameter
constant: true
value: 0.0275
name: Rce

362276
type: Parameter
constant: true
value: 2.7
name: nh_O2

362453
type: Parameter
constant: true
value: 0.46
name: k2

362383
type: Parameter
constant: false
value: NaN
name: v_stim

362281
type: Parameter
constant: false
value: NaN
name: Vg_pump

362341
type: Parameter
constant: false
value: NaN
name: Vn_stim_GLU

362323
type: Parameter
constant: true
value: 0.0243
name: kfg_ck

401544
type: SBMLUnitsDef
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unit: 401556
name: mM

401568
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

401556
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

362437
type: Parameter
constant: true
value: 0.25
name: Vg

362265
type: Parameter
constant: false
value: NaN
name: Vne_LAC

362195
type: Parameter
constant: false
value: 0.0418
name: GAPn

362460
type: Parameter
constant: true
value: 0.041
name: v1_n

362267
type: Parameter
constant: true
value: 0.09314
name: Km_ne_LAC

362357
type: Parameter
constant: false
value: NaN
name: Fin_t

362207
type: Parameter
constant: false
value: 0.1656
name: GLCg

362462
type: Parameter
constant: true
value: 2.55
name: v2_n

362444
type: Parameter
constant: true
value: 4.2
name: GLY_inh

362314
type: Parameter
constant: false
value: NaN
name: Vgc_LAC

362382
type: Parameter
constant: false
value: NaN
name: BOLD

362470
type: Parameter
constant: true
value: 83.0
name: to_GLY

362250
type: Parameter
constant: true
value: 0.45
name: Vmaxr_n_pgi

362363
type: Parameter
constant: true
value: 0.22
name: NADH_n_tot

362324
type: Parameter
constant: false
value: NaN
name: Vcg_O2

362347
type: Parameter
constant: false
value: NaN
name: Vc_CO2

362365
type: Parameter
constant: true
value: 0.22
name: NADH_g_tot

362311
type: Parameter
constant: false
value: NaN
name: Vge_LAC

401520
type: SBMLUnitsDef
unit: 401532
name: s

401532
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND

362349
type: Parameter
constant: true
value: 1.528E-4
name: Vmax_glys

362354
type: Parameter
constant: true
value: 1.0
name: Km_GLY

362222
type: Parameter
constant: false
value: 0.0
name: GLUg

362362
type: Parameter
constant: false
value: NaN
name: NADn

362445
type: Parameter
constant: true
value: 20.0
name: aGLY_inh

362230
type: Parameter
constant: false
value: 0.3251
name: LACc

362468
type: Parameter
constant: true
value: 0.42
name: deltaf

362338
type: Parameter
constant: false
value: NaN
name: Vnc_CO2

401958
type: SBMLUnitsDef
unit: 401997
unit: 401984
unit: 401971
name: mV_C_per_mol

401997
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: MOLE

401984
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: COULOMB

401971
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: VOLT

362206
type: Parameter
constant: false
value: 13.36
name: NAg

362364
type: Parameter
constant: false
value: NaN
name: NADg

362346
type: Parameter
constant: true
value: 0.0208
name: Vmax_eg_GLU

362232
type: Parameter
constant: false
value: 0.0237
name: Vv

362214
type: Parameter
constant: false
value: 0.1711
name: PYRg

362348
type: Parameter
constant: false
value: NaN
name: Vg_glys

362258
type: Parameter
constant: false
value: NaN
name: Vn_ldh

362216
type: Parameter
constant: false
value: 0.0445
name: NADHg

362435
type: Parameter
constant: true
value: 10500.0
name: Sm_g

401825
type: SBMLUnitsDef
unit: 401849
unit: 401837
name: C_per_mole

401849
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: MOLE

401837
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: COULOMB

362221
type: Parameter
constant: false
value: 2.5
name: GLYg

362467
type: Parameter
constant: true
value: 62.0
name: delta_GLY

362319
type: Parameter
constant: true
value: 0.035657
name: Vmax_g_ATPase

362191
type: Parameter
constant: false
value: 0.7275
name: G6Pn

362205
type: Parameter
constant: false
value: 3.0
name: GLUn

362251
type: Parameter
constant: false
value: NaN
name: Vn_pfk

362469
type: Parameter
constant: true
value: 440.0
name: tend_GLY

362432
type: Parameter
constant: true
value: 20.0
name: rATP_mito

362298
type: Parameter
constant: false
value: NaN
name: Vg_pgk

362238
type: Parameter
constant: false
value: NaN
name: Vn_pump

362404
type: Parameter
constant: true
value: 2.379
name: ATPtot

362392
type: Parameter
constant: true
value: 0.0029658
name: Km_O2

362459
type: Parameter
constant: true
value: 300.0
name: tend

362260
type: Parameter
constant: true
value: 5.3
name: kfn_ldh

362291
type: Parameter
constant: true
value: 0.050461
name: Vmax_g_hk

362414
type: Parameter
constant: true
value: 3.0
name: NAero

362229
type: Parameter
constant: false
value: 4.6401
name: GLCc

362275
type: Parameter
constant: false
value: NaN
name: Vcn_O2

362373
type: Parameter
constant: false
value: NaN
name: ADPg

362403
type: Parameter
constant: true
value: 3.17E-7
name: kpump

362194
type: Parameter
constant: false
value: 0.1091
name: F6Pn

362282
type: Parameter
constant: false
value: NaN
name: Veg_GLC

362405
type: Parameter
constant: true
value: 150.0
name: NAe

362356
type: Parameter
constant: false
value: NaN
name: deltaVt_GLY

362224
type: Parameter
constant: false
value: 0.3339
name: GLCe

362321
type: Parameter
constant: false
value: NaN
name: Vg_ck

362268
type: Parameter
constant: false
value: NaN
name: Vn_ATPase

362397
type: Parameter
constant: true
value: 0.06
name: Km_F6P_pgi

W3 CDTF: Fri Jun 25 13:46:06 BST 2010

362283
type: Parameter
constant: true
value: 3.53
name: Km_eg_GLC

362442
type: Parameter
constant: true
value: 1.0
name: KO2

362380
type: Parameter
constant: false
value: NaN
name: AMPg

ORG:
  orgname: University of Auckland
n:
  given: Catherine
  family: Lloyd

362412
type: Parameter
constant: true
value: 0.313
name: LACa

362387
type: Parameter
constant: true
value: 0.0632
name: Km_PYR

362273
type: Parameter
constant: true
value: 0.0524681
name: kfn_ck

362231
type: Parameter
constant: false
value: 2.12
name: CO2c

401800
type: SBMLUnitsDef
unit: 401813
name: per_cm

401813
type: SBMLUnit
exponent: -1.0
scale: -2
multipler: 1.0
kind: METRE

362329
type: Parameter
constant: false
value: NaN
name: Vce_GLC

362257
type: Parameter
constant: true
value: 28.6
name: kn_pk

362215
type: Parameter
constant: false
value: 0.4651
name: LACg

362270
type: Parameter
constant: true
value: 0.04889
name: Vmax_n_ATPase

362425
type: Parameter
constant: true
value: 2577340.0
name: RT

362313
type: Parameter
constant: true
value: 0.22163
name: Km_ge_LAC

362318
type: Parameter
constant: false
value: NaN
name: Vg_ATPase

362190
type: Parameter
constant: false
value: 0.2633
name: GLCn

362344
type: Parameter
constant: false
value: NaN
name: Veg_GLU

362212
type: Parameter
constant: false
value: 0.0254
name: PEPg

401934
type: SBMLUnitsDef
unit: 401946
name: mV

401946
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: VOLT

362388
type: Parameter
constant: true
value: 0.01532
name: Km_ATP

362328
type: Parameter
constant: false
value: NaN
name: Vc_GLC

362256
type: Parameter
constant: false
value: NaN
name: Vn_pk

362297
type: Parameter
constant: true
value: 0.403
name: kg_pfk

362237
type: Parameter
constant: true
value: 0.0039
name: gn_NA

362303
type: Parameter
constant: false
value: NaN
name: Vg_ldh

362351
type: Parameter
constant: true
value: 0.5
name: Km_G6P_glys

362201
type: Parameter
constant: false
value: 2.2592
name: ATPn

362465
type: Parameter
constant: true
value: 2.0
name: t1

362395
type: Parameter
constant: true
value: 0.5
name: Km_G6P

362353
type: Parameter
constant: true
value: 4.922E-5
name: Vmax_glyp

362245
type: Parameter
constant: false
value: NaN
name: Vn_hk

362440
type: Parameter
constant: true
value: 0.075
name: R_GLU_NA

362449
type: Parameter
constant: true
value: 35.0
name: tv

362379
type: Parameter
constant: false
value: NaN
name: AMPn

362337
type: Parameter
constant: true
value: 0.0325
name: Vm_ec_LAC

362413
type: Parameter
constant: true
value: 15.0
name: nOP

362424
type: Parameter
constant: true
value: -70.0
name: Vm

362278
type: Parameter
constant: false
value: NaN
name: Vg_leak_Na

362450
type: Parameter
constant: true
value: 0.92
name: qak

362302
type: Parameter
constant: true
value: 2.73
name: kg_pk

W3 CDTF: Fri Jun 25 13:46:06 BST 2010

362343
type: Parameter
constant: true
value: 0.3
name: Vmax_g_gs

401898
type: SBMLUnitsDef
unit: 401922
unit: 401910
name: mS_per_cm2

401922
type: SBMLUnit
exponent: -2.0
scale: -2
multipler: 1.0
kind: METRE

401910
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: SIEMENS

362372
type: Parameter
constant: false
value: NaN
name: ADPn

362434
type: Parameter
constant: true
value: 8.6
name: HbOP

362439
type: Parameter
constant: true
value: 0.0055
name: Vc

362240
type: Parameter
constant: false
value: NaN
name: Vn_stim

362327
type: Parameter
constant: false
value: NaN
name: Vc_O2

362197
type: Parameter
constant: false
value: 0.0388
name: PYRn

362359
type: Parameter
constant: false
value: NaN
name: Fout_t

362199
type: Parameter
constant: false
value: 0.3856
name: LACn

362209
type: Parameter
constant: false
value: 0.7326
name: G6Pg

362423
type: Parameter
constant: true
value: 40500.0
name: Sm_n

362464
type: Parameter
constant: true
value: 4.59186
name: sr

362472
type: Parameter
constant: true
value: 4.0
name: sr_GLY

362342
type: Parameter
constant: false
value: NaN
name: Vg_gs

362210
type: Parameter
constant: false
value: 0.1116
name: F6Pg

362448
type: Parameter
constant: true
value: 0.0236
name: Vv0

362326
type: Parameter
constant: true
value: 0.2457
name: PScapg

362280
type: Parameter
constant: true
value: 0.00325
name: gg_NA

362458
type: Parameter
constant: true
value: 200.0
name: to

W3 CDTF: Fri Jun 25 13:46:06 BST 2010

362463
type: Parameter
constant: true
value: 2.0
name: t_n_stim

362248
type: Parameter
constant: true
value: 0.5
name: Vmaxf_n_pgi

362447
type: Parameter
constant: true
value: 0.012
name: CBF0

ORG:
  orgname: University of Auckland
n:
  given: Catherine
  family: Lloyd

362263
type: Parameter
constant: true
value: 0.05557
name: Vmax_n_mito

362290
type: Parameter
constant: false
value: NaN
name: Vg_hk

362409
type: Parameter
constant: true
value: 1.2
name: CO2a

401665
type: SBMLUnitsDef
unit: 401701
unit: 401689
unit: 401677
name: per_mM_per_s

401701
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

401689
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE

401677
type: SBMLUnit
exponent: -1.0
scale: -3
multipler: 1.0
kind: MOLE

362370
type: Parameter
constant: true
value: 5.0
name: PCrg_tot

362058
type: Compartment
constant: true
units: litre
size: 1.0
spatial dimensions: 3.0

362247
type: Parameter
constant: false
value: NaN
name: Vn_pgi

362288
type: Parameter
constant: true
value: 0.0098394
name: Vm_cg_GLC

362312
type: Parameter
constant: true
value: 0.086124
name: Vmax_ge_LAC

362410
type: Parameter
constant: true
value: 4.8
name: GLCa

362253
type: Parameter
constant: false
value: NaN
name: Vn_pgk

362211
type: Parameter
constant: false
value: 0.0698
name: GAPg

ORG:
  orgname: University of Auckland
n:
  given: Catherine
  family: Lloyd

362255
type: Parameter
constant: true
value: 0.4287
name: kn_pgk

362389
type: Parameter
constant: true
value: 0.7595
name: Ki_ATP

362287
type: Parameter
constant: true
value: 9.92
name: Km_cg_GLC

362394
type: Parameter
constant: true
value: 0.05
name: Km_GLU

362352
type: Parameter
constant: false
value: NaN
name: Vg_glyp

362334
type: Parameter
constant: false
value: NaN
name: Vec_LAC

362262
type: Parameter
constant: false
value: NaN
name: Vn_mito

362220
type: Parameter
constant: false
value: 0.1589
name: O2g

362202
type: Parameter
constant: false
value: 4.2529
name: PCrn

362378
type: Parameter
constant: false
value: NaN
name: dAMP_dATPg

362336
type: Parameter
constant: true
value: 0.764818
name: Km_ec_LAC

362246
type: Parameter
constant: true
value: 0.0513
name: Vmax_n_hk

362204
type: Parameter
constant: false
value: 0.0975
name: O2n

362272
type: Parameter
constant: true
value: 0.015
name: krn_ck

362277
type: Parameter
constant: true
value: 0.2202
name: PScapn

362418
type: Parameter
constant: true
value: 0.444444444444444
name: Ren

362369
type: Parameter
constant: false
value: NaN
name: CRg

401713
type: SBMLUnitsDef
unit: 401726
name: per_s

401726
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

362375
type: Parameter
constant: false
value: NaN
name: u_g

362219
type: Parameter
constant: false
value: 4.6817
name: PCrg

362433
type: Parameter
constant: true
value: 5.0
name: aATP_mito

362333
type: Parameter
constant: false
value: NaN
name: Vc_LAC

362261
type: Parameter
constant: true
value: 0.1046
name: krn_ldh

362196
type: Parameter
constant: false
value: 0.0037
name: PEPn

362420
type: Parameter
constant: true
value: 0.022
name: Rcg

362377
type: Parameter
constant: false
value: NaN
name: dAMP_dATPn

362407
type: Parameter
constant: true
value: 4.0
name: nH

362317
type: Parameter
constant: true
value: 0.12862
name: Km_gc_LAC

362358
type: Parameter
constant: true
value: 0.012
name: CBF0

362286
type: Parameter
constant: false
value: NaN
name: Vcg_GLC

362226
type: Parameter
constant: false
value: 0.0
name: GLUe

362430
type: Parameter
constant: true
value: 20.0
name: aG6P_inh_hk

362300
type: Parameter
constant: true
value: 0.2514
name: kg_pgk

W3 CDTF: Fri Jun 25 13:46:06 BST 2010