MODEL0995500644
type: SBMLModel
reaction: metaid_0000023
reaction: metaid_0000022
species: metaid_0000014
compartment: metaid_0000003
reaction: metaid_0000019
is described by: http://identifiers.org/pubmed/15784266
curated: false
reaction: metaid_0000028
species: metaid_0000011
species: metaid_0000007
species: metaid_0000012
species: metaid_0000010
substance units: 608838
notes: This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.. To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
name: Rodriguez2005_denovo_pyrimidine_biosynthesis
volume units: 970346
reaction: metaid_0000026
reaction: metaid_0000024
reaction: metaid_0000018
species: metaid_0000030
reaction: metaid_0000020
reaction: metaid_0000025
species: metaid_0000005
length unit: 335510
species: metaid_0000008
reaction: metaid_0000027
reaction: metaid_0000021
species: metaid_0000006
area units: area
species: metaid_0000009
species: metaid_0000015
reaction: metaid_0000017
reaction: metaid_0000016
species: metaid_0000013
time units: 729614

metaid_0000023
type: Reaction
kinetic law: 745697
reactant: 745684
fast: false
reversible: false

707306
type: LocalParameter
value: 5.8

707305
type: LocalParameter
value: 0.4

745684
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000011

metaid_0000011
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 6.0
initial amount: NaN
in compartment: metaid_0000003

metaid_0000003
type: Compartment
constant: true
size: 1.0
spatial dimensions: 3.0

metaid_0000022
type: Reaction
kinetic law: 745672
product: 745660
reactant: 745648
fast: false
reversible: false

707304
type: LocalParameter
value: 19.8

707301
type: LocalParameter
value: 1.18

745660
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000011

745648
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000010

metaid_0000010
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 6.0
initial amount: NaN
in compartment: metaid_0000003

metaid_0000014
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 7.5
initial amount: NaN
in compartment: metaid_0000003

metaid_0000019
type: Reaction
kinetic law: 745564
product: 745552
reactant: 745540
fast: false
reversible: false

707294
type: LocalParameter
value: 0.24

707291
type: LocalParameter
value: 6.4

745552
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000008

metaid_0000008
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 10.0
initial amount: NaN
in compartment: metaid_0000003

745540
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

metaid_0000007
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 10.0
initial amount: NaN
in compartment: metaid_0000003

metaid_0000028
type: Reaction
kinetic law: 745881
modifier: 745868
modifier: 745855
product: 745842
fast: false
reversible: false

707324
type: LocalParameter
value: 36.0
name: K_e1

707322
type: LocalParameter
value: 0.072

707319
type: LocalParameter
value: 120.0

metaid_0000012
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.2
initial amount: NaN
in compartment: metaid_0000003

metaid_0000013
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 5.0
initial amount: NaN
in compartment: metaid_0000003

745842
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000015

metaid_0000015
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 700.0
initial amount: NaN
in compartment: metaid_0000003

metaid_0000026
type: Reaction
kinetic law: 745793
product: 745781
reactant: 745769
fast: false
reversible: false

707316
type: LocalParameter
value: 0.08

707314
type: LocalParameter
value: 0.18

707313
type: LocalParameter
value: 2.8

745781
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000010

745769
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000013

metaid_0000024
type: Reaction
kinetic law: 745733
product: 745721
reactant: 745709
fast: false
reversible: false

707310
type: LocalParameter
value: 8.4

707307
type: LocalParameter
value: 0.28

745721
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000012

745709
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000011

metaid_0000018
type: Reaction
kinetic law: 745527
product: 745514
reactant: 745502
fast: false
reversible: false

707290
type: LocalParameter
value: 0.7

707289
type: LocalParameter
value: 24.7

745514
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000007

745502
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000006

metaid_0000006
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 10.0
initial amount: NaN
in compartment: metaid_0000003

metaid_0000030
type: Species
constant: true
boundary condition: false
has only substance units: false
initial concentration: 6.0
initial amount: NaN
in compartment: metaid_0000003
name: atp

metaid_0000020
type: Reaction
kinetic law: 745600
product: 745588
reactant: 745576
fast: false
reversible: false

707298
type: LocalParameter
value: 0.18
name: prpp

707296
type: LocalParameter
value: 9.9

707295
type: LocalParameter
value: 0.6

745588
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000009

metaid_0000009
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 10.0
initial amount: NaN
in compartment: metaid_0000003

745576
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000008

metaid_0000025
type: Reaction
kinetic law: 745757
reactant: 745745
fast: false
reversible: false

707312
type: LocalParameter
value: 5.8

707311
type: LocalParameter
value: 0.4

745745
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000012

metaid_0000005
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 10.0
initial amount: NaN
in compartment: metaid_0000003

metaid_0000027
type: Reaction
kinetic law: 745829
modifier: 745817
product: 745805
fast: false
reversible: false

707318
type: LocalParameter
value: 0.12

707317
type: LocalParameter
value: 36.0

745805
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000014

metaid_0000021
type: Reaction
kinetic law: 745636
product: 745624
reactant: 745612
fast: false
reversible: false

707300
type: LocalParameter
value: 32.0

707299
type: LocalParameter
value: 0.8

745624
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000010

745612
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000009

metaid_0000017
type: Reaction
modifier: 745430
modifier: 745478
product: 745418
modifier: 745454
kinetic law: 745490
reversible: false
reactant: 745406
modifier: 745466
modifier: 745442
fast: false

745418
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000006

707280
type: LocalParameter
value: 4.8

707282
type: LocalParameter
value: 4.1

707286
type: LocalParameter
value: 19.8

707276
type: LocalParameter
value: 2.0

707284
type: LocalParameter
value: 4.9

707288
type: LocalParameter
value: 2.3

707278
type: LocalParameter
value: 2.0

707274
type: LocalParameter
value: 4.0

707273
type: LocalParameter
value: 24.0

745406
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000005

metaid_0000016
type: Reaction
kinetic law: 745394
modifier: 745382
modifier: 745370
product: 745358
fast: false
reversible: false

707272
type: LocalParameter
value: 36.0

707270
type: LocalParameter
value: 22.0

707268
type: LocalParameter
value: 750.0

707266
type: LocalParameter
value: 980.0

707264
type: LocalParameter
value: 4.0

707263
type: LocalParameter
value: 8.0

707262
type: LocalParameter
value: 0.38

745358
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000005