BIOMD0000000412
type: SBMLModel
species: s10
parameter: p19
reaction: cE4 trsl
species: s45
parameter: g6
function def: function 4 cE3 m trscr
reaction: cZTL degr
species: cLm
name: function_4_cNI_m_trscr
parameter: g2
species: cE3
function def: function 4 cCOP1n import
reaction: cL modif
parameter: p28
parameter: n6
substance units: substance
occurs in: http://identifiers.org/taxonomy/3702
species: s24
parameter: m28
species: cEG
parameter: m34
reaction: cG cE3 assoc
species: s22
name: function_4_cL_m_degr
name: function_4_cEC_degr
function def: function 4 cCOP1d activ
function def: function 4 cEC degr
reaction: cP9 m degr
parameter: n9
reaction: cCOP1n import
function def: function 4 cZG degr
function def: function 4 cCOP1c trsl
parameter: m37
parameter: p2
function def: function 4 cCOP1n degr
function def: function 4 cE3 degr
length unit: length
species: s25
species: s16
function def: function 4 cP7 m trscr
species: s37
parameter: p16
parameter: m4
parameter: http://identifiers.org/biomodels.db/BIOMD0000000412#a
parameter: g13
name: function_4_cP9_m_degr
parameter: m16
parameter: m22
function def: function 4 cLUX m degr
function def: function 4 cLUX m trscr
function def: function 4 cE3n import
parameter: COPASI10
function def: function 4 cP9 m trscr 1
parameter: q1
parameter: p7
name: function_4_cZTL_trsl
name: function_4_cT_degr
parameter: m7
parameter: http://identifiers.org/biomodels.db/BIOMD0000000412#n3
reaction: cE3 degr
name: function_4_cCOP1c_trsl
parameter: g16
parameter: parameter 5
species: s38
parameter: m25
parameter: m31
function def: function 4 cZTL trsl
name: function_4_cP9_trsl
species: s28
parameter: p21
parameter: n13
name: function_4_cP7_degr
parameter: COPASI2
parameter: m10
parameter: COPASI9
species: s34
parameter: g4
name: function_4_cL_modif
name: function_4_cP_trsl

s10
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s10

def
type: Compartment
is version of: GO:0005623
is: SBO:0000290
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0
name: def

CDMT00238
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: LITRE

p19
type: Parameter
constant: true
value: 1.0
name: p19

cE4 trsl
type: Reaction
kinetic law: CDMT00108
modifier: CDMT00107
product: CDMT00106
reactant: CDMT00105
is version of: GO:0006412
fast: false
reversible: false
name: cE4_trsl

cE4 m
type: Species
boundary condition: false
name: cE4_m
encodes: O04211
is version of: CHEBI:33699
has only substance units: false
initial amount: NaN
initial concentration: 0.1012
in compartment: def
is: SBO:0000278
constant: false

CDMT00106
type: SpeciesReference
stoichiometry: 1.0
species: cE4

cE4
type: Species
initial concentration: 0.207
has only substance units: false
initial amount: NaN
name: cE4
is: SBO:0000252
in compartment: def
constant: false
is version of: O04211
boundary condition: false

CDMT00105
type: SpeciesReference
stoichiometry: 1.0
species: s27

s27
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s27

s45
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s45

g6
type: Parameter
constant: true
value: 0.3
name: g6

cZTL degr
type: Reaction
kinetic law: CDMT00206
product: CDMT00205
reactant: CDMT00204
is version of: GO:0030163
fast: false
reversible: false
name: cZTL_degr

CDMT00205
type: SpeciesReference
stoichiometry: 1.0
species: s47

s47
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s47

CDMT00204
type: SpeciesReference
stoichiometry: 1.0
species: cZTL

cZTL
type: Species
is: SBO:0000252
boundary condition: false
initial amount: NaN
has only substance units: false
is version of: Q94BT6
constant: false
initial concentration: 0.2505
in compartment: def
name: cZTL

cLm
type: Species
constant: false
in compartment: def
boundary condition: false
has part: P92973
initial concentration: 0.0788
name: cLm
has part: Q6R0H1
is: SBO:0000297
is version of: CCO:U0000010
has only substance units: false
initial amount: NaN

g2
type: Parameter
constant: true
value: 0.01
name: g2

cE3
type: Species
initial amount: NaN
is: SBO:0000252
in compartment: def
name: cE3
is version of: O82804
initial concentration: 0.1503
constant: false
has only substance units: false
boundary condition: false

cL modif
type: Reaction
kinetic law: CDMT00023
modifier: CDMT00022
product: CDMT00021
reactant: CDMT00020
is version of: MOD:00000
fast: false
reversible: false
name: cL_modif

cL
type: Species
initial amount: NaN
is: SBO:0000297
has only substance units: false
in compartment: def
has part: Q6R0H1
boundary condition: false
has part: P92973
name: cL
constant: false
initial concentration: 0.506

CDMT00021
type: SpeciesReference
stoichiometry: 1.0
species: cLm

CDMT00020
type: SpeciesReference
stoichiometry: 1.0
species: s5

s5
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s5

p28
type: Parameter
constant: true
value: 2.0
name: p28

n6
type: Parameter
constant: true
value: 20.0
name: n6

CDMT00240
type: SBMLUnit
exponent: 1.0
scale: -9
multipler: 1.0
kind: MOLE

s24
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s24

m28
type: Parameter
constant: true
value: 20.0
name: m28

cEG
type: Species
constant: false
in compartment: def
initial concentration: 0.0041
has only substance units: false
boundary condition: false
initial amount: NaN
is: SBO:0000297
name: cEG
is version of: O82804
is version of: Q9SQI2

m34
type: Parameter
constant: true
value: 0.6
name: m34

cG cE3 assoc
type: Reaction
kinetic law: CDMT00213
product: CDMT00212
reactant: CDMT00211
reactant: CDMT00210
is version of: GO:0006461
fast: false
reversible: false
name: cG_cE3_assoc

CDMT00212
type: SpeciesReference
stoichiometry: 1.0
species: cEG

CDMT00211
type: SpeciesReference
stoichiometry: 1.0
species: cG

cG
type: Species
name: cG
initial amount: NaN
constant: false
is version of: Q9SQI2
is: SBO:0000252
has only substance units: false
initial concentration: 0.0196
in compartment: def
boundary condition: false

CDMT00210
type: SpeciesReference
stoichiometry: 1.0
species: cE3

s22
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s22

cP9 m degr
type: Reaction
kinetic law: CDMT00041
product: CDMT00040
reactant: CDMT00039
is version of: GO:0006402
fast: false
reversible: false
name: cP9_m_degr

CDMT00040
type: SpeciesReference
stoichiometry: 1.0
species: s10

CDMT00039
type: SpeciesReference
stoichiometry: 1.0
species: cP9 m

cP9 m
type: Species
is version of: CHEBI:33699
name: cP9_m
in compartment: def
encodes: Q8L500
has only substance units: false
constant: false
initial amount: NaN
is: SBO:0000278
initial concentration: 0.0658
boundary condition: false

n9
type: Parameter
constant: true
value: 0.2
name: n9

cCOP1n import
type: Reaction
kinetic law: CDMT00169
product: CDMT00168
reactant: CDMT00167
is version of: GO:0015031
fast: false
reversible: false
name: cCOP1n_import

CDMT00168
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1n

cCOP1n
type: Species
boundary condition: false
is: SBO:0000252
is version of: P43254
initial amount: NaN
has only substance units: false
occurs in: GO:0005634
name: cCOP1n
in compartment: def
initial concentration: 0.65
constant: false

CDMT00167
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1c

cCOP1c
type: Species
initial amount: NaN
constant: false
is: SBO:0000252
initial concentration: 0.3269
name: cCOP1c
has only substance units: false
in compartment: def
boundary condition: false
occurs in: GO:0005737
is version of: P43254

m37
type: Parameter
constant: true
value: 0.8
name: m37

p2
type: Parameter
constant: true
value: 0.27
name: p2

length
type: SBMLUnitsDef
unit: CDMT00242
name: length

CDMT00242
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: METRE

s25
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s25

s16
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s16

s37
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s37

p16
type: Parameter
constant: true
value: 0.62
name: p16

m4
type: Parameter
constant: true
value: 0.2
name: m4

http://identifiers.org/biomodels.db/BIOMD0000000412#a
type: Parameter
constant: true
value: 2.0
name: a

g13
type: Parameter
constant: true
value: 1.0
name: g13

m16
type: Parameter
constant: true
value: 0.5
name: m16

m22
type: Parameter
constant: true
value: 0.1
name: m22

COPASI10
type: Parameter
constant: true
units: time
value: 24.0
name: cyclePeriod

CDMT00239
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 3600.0
kind: SECOND

q1
type: Parameter
constant: true
value: 1.2
name: q1

p7
type: Parameter
constant: true
value: 0.3
name: p7

m7
type: Parameter
constant: true
value: 0.7
name: m7

http://identifiers.org/biomodels.db/BIOMD0000000412#n3
type: Parameter
constant: true
value: 0.29
name: n3

cE3 degr
type: Reaction
kinetic law: CDMT00130
modifier: CDMT00129
product: CDMT00128
reactant: CDMT00127
is version of: GO:0030163
fast: false
reversible: false
name: cE3_degr

CDMT00128
type: SpeciesReference
stoichiometry: 1.0
species: s32

s32
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s32

CDMT00127
type: SpeciesReference
stoichiometry: 1.0
species: cE3

g16
type: Parameter
constant: true
value: 0.3
name: g16

parameter 5
type: Parameter
constant: true
units: time
value: 0.0
name: phase

s38
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s38

m25
type: Parameter
constant: true
value: 1.8
name: m25

m31
type: Parameter
constant: true
value: 0.3
name: m31

s28
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s28

p21
type: Parameter
constant: true
value: 1.0
name: p21

n13
type: Parameter
constant: true
value: 1.3
name: n13

COPASI2
type: Parameter
constant: true
value: 0.5
name: g10

m10
type: Parameter
constant: true
value: 1.0
name: m10

COPASI9
type: Parameter
constant: true
units: time
value: 0.0
name: lightOffset

s34
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s34

g4
type: Parameter
constant: true
value: 0.01
name: g4

cLUX degr
type: Reaction
modifier: CDMT00158
fast: false
reversible: false
modifier: CDMT00157
product: CDMT00155
name: cLUX_degr
is version of: GO:0030163
reactant: CDMT00154
modifier: CDMT00159
modifier: CDMT00156
kinetic law: CDMT00160

cE3n
type: Species
initial amount: NaN
boundary condition: false
constant: false
name: cE3n
occurs in: GO:0005634
is version of: O82804
in compartment: def
initial concentration: 0.0286
has only substance units: false
is: SBO:0000252

CDMT00155
type: SpeciesReference
stoichiometry: 1.0
species: s37

CDMT00154
type: SpeciesReference
stoichiometry: 1.0
species: cLUX

cLUX
type: Species
initial concentration: 0.576
has only substance units: false
boundary condition: false
is: SBO:0000252
constant: false
is version of: F4J959
initial amount: NaN
name: cLUX
in compartment: def

cCOP1d
type: Species
has only substance units: false
in compartment: def
initial amount: NaN
occurs in: GO:0005634
is version of: P43254
initial concentration: 0.2566
name: cCOP1d
constant: false
is: SBO:0000252
boundary condition: false

m1
type: Parameter
constant: true
value: 0.54
name: m1

p30
type: Parameter
constant: true
value: 0.9
name: p30

s29
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s29

http://identifiers.org/biomodels.db/BIOMD0000000412#e
type: Parameter
constant: true
value: 2.0
name: e

COPASI5
type: Parameter
constant: true
units: time
value: 1.0
name: L

m13
type: Parameter
constant: true
value: 0.32
name: m13

s13
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s13

cP trsl
type: Reaction
kinetic law: CDMT00029
product: CDMT00028
reactant: CDMT00027
is version of: GO:0006412
fast: false
reversible: false
name: cP_trsl

CDMT00028
type: SpeciesReference
stoichiometry: 1.0
species: cP

cP
type: Species
has only substance units: false
initial concentration: 0.956
name: cP
boundary condition: false
is: SBO:0000252
in compartment: def
initial amount: NaN
constant: false
is version of: GO:0003675

CDMT00027
type: SpeciesReference
stoichiometry: 1.0
species: s7

s7
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s7

s50
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s50

s46
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s46

cG trsl
type: Reaction
kinetic law: CDMT00192
modifier: CDMT00191
product: CDMT00190
reactant: CDMT00189
is version of: GO:0006412
fast: false
reversible: false
name: cG_trsl

cG m
type: Species
is version of: CHEBI:33699
encodes: Q9SQI2
constant: false
boundary condition: false
name: cG_m
initial amount: NaN
is: SBO:0000278
has only substance units: false
initial concentration: 0.1017
in compartment: def

CDMT00190
type: SpeciesReference
stoichiometry: 1.0
species: cG

CDMT00189
type: SpeciesReference
stoichiometry: 1.0
species: s44

s44
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s44

cCOP1d degr
type: Reaction
kinetic law: CDMT00179
product: CDMT00178
reactant: CDMT00177
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1d_degr

CDMT00178
type: SpeciesReference
stoichiometry: 1.0
species: s41

s41
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s41

CDMT00177
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1d

m29
type: Parameter
constant: true
value: 5.0
name: m29

cLUX m trscr
type: Reaction
name: cLUX_m_trscr
reversible: false
is version of: GO:0009299
reactant: CDMT00142
product: CDMT00143
kinetic law: CDMT00146
modifier: CDMT00144
fast: false
modifier: CDMT00145

CDMT00142
type: SpeciesReference
stoichiometry: 1.0
species: s34

CDMT00143
type: SpeciesReference
stoichiometry: 1.0
species: cLUX m

cLUX m
type: Species
has only substance units: false
is version of: CHEBI:33699
constant: false
is: SBO:0000278
name: cLUX_m
encodes: F4J959
boundary condition: false
in compartment: def
initial amount: NaN
initial concentration: 0.1012

cEC
type: Species
in compartment: def
constant: false
has part: O82804
initial concentration: 0.0709
has part: F4J959
has only substance units: false
initial amount: NaN
is: SBO:0000297
boundary condition: false
has part: O04211
name: cEC

p14
type: Parameter
constant: true
value: 0.14
name: p14

n10
type: Parameter
constant: true
value: 0.4
name: n10

s14
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s14

g8
type: Parameter
constant: true
value: 0.01
name: g8

cNI m
type: Species
is version of: CHEBI:33699
initial amount: NaN
boundary condition: false
name: cNI_m
encodes: Q9LVG4
constant: false
initial concentration: 0.0731
is: SBO:0000278
in compartment: def
has only substance units: false

cEC degr
type: Reaction
modifier: CDMT00234
is version of: GO:0030163
modifier: CDMT00235
kinetic law: CDMT00237
product: CDMT00231
reversible: false
modifier: CDMT00236
modifier: CDMT00233
fast: false
reactant: CDMT00230
modifier: CDMT00232
name: cEC_degr

CDMT00231
type: SpeciesReference
stoichiometry: 1.0
species: s51

s51
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s51

CDMT00230
type: SpeciesReference
stoichiometry: 1.0
species: cEC

cNI degr
type: Reaction
kinetic law: CDMT00079
product: CDMT00078
reactant: CDMT00077
is version of: GO:0030163
fast: false
reversible: false
name: cNI_degr

CDMT00078
type: SpeciesReference
stoichiometry: 1.0
species: s20

s20
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s20

CDMT00077
type: SpeciesReference
stoichiometry: 1.0
species: cNI

cNI
type: Species
initial amount: NaN
initial concentration: 0.0697
in compartment: def
is: SBO:0000252
has only substance units: false
constant: false
name: cNI
boundary condition: false
is version of: Q6LA42

cT m trscr
type: Reaction
modifier: CDMT00083
reversible: false
product: CDMT00081
modifier: CDMT00082
kinetic law: CDMT00084
name: cT_m_trscr
fast: false
reactant: CDMT00080
is version of: GO:0009299

CDMT00081
type: SpeciesReference
stoichiometry: 1.0
species: cT m

cT m
type: Species
name: cT_m
has only substance units: false
initial concentration: 0.0977
initial amount: NaN
in compartment: def
boundary condition: false
encodes: Q9LKL2
constant: false
is: SBO:0000278
is version of: CHEBI:33699

CDMT00080
type: SpeciesReference
stoichiometry: 1.0
species: s21

s21
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s21

n8
type: Parameter
constant: true
value: 0.5
name: n8

s26
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s26

s17
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s17

m36
type: Parameter
constant: true
value: 0.1
name: m36

cZG degr
type: Reaction
kinetic law: CDMT00209
product: CDMT00208
reactant: CDMT00207
is version of: GO:0030163
fast: false
reversible: false
name: cZG_degr

CDMT00208
type: SpeciesReference
stoichiometry: 1.0
species: s48

s48
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s48

CDMT00207
type: SpeciesReference
stoichiometry: 1.0
species: cZG

cZG
type: Species
in compartment: def
has only substance units: false
initial concentration: 0.0755
initial amount: NaN
is version of: Q9SQI2
name: cZG
is: SBO:0000297
is version of: Q94BT6
constant: false
boundary condition: false

cP9
type: Species
has only substance units: false
is: SBO:0000252
initial amount: NaN
boundary condition: false
in compartment: def
initial concentration: 0.0238
constant: false
is version of: Q8L500
name: cP9

area
type: SBMLUnitsDef
unit: CDMT00241
name: area

CDMT00241
type: SBMLUnit
exponent: 2.0
scale: 0
multipler: 1.0
kind: METRE

p4
type: Parameter
constant: true
value: 0.56
name: p4

cP7
type: Species
is version of: Q93WK5
constant: false
initial concentration: 0.1167
in compartment: def
initial amount: NaN
has only substance units: false
boundary condition: false
name: cP7
is: SBO:0000252

m39
type: Parameter
constant: true
value: 0.3
name: m39

cE3 trsl
type: Reaction
kinetic law: CDMT00126
modifier: CDMT00125
product: CDMT00124
reactant: CDMT00123
is version of: GO:0006412
fast: false
reversible: false
name: cE3_trsl

cE3 m
type: Species
initial concentration: 0.2991
boundary condition: false
encodes: O82804
has only substance units: false
is version of: CHEBI:33699
initial amount: NaN
is: SBO:0000278
constant: false
name: cE3_m
in compartment: def

CDMT00124
type: SpeciesReference
stoichiometry: 1.0
species: cE3

CDMT00123
type: SpeciesReference
stoichiometry: 1.0
species: s31

s31
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s31

s18
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s18

p18
type: Parameter
constant: true
value: 4.0
name: p18

s39
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s39

m6
type: Parameter
constant: true
value: 0.3
name: m6

g5
type: Parameter
constant: true
value: 0.15
name: g5

m24
type: Parameter
constant: true
value: 0.1
name: m24

s3
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s3

cP7 degr
type: Reaction
kinetic law: CDMT00064
product: CDMT00063
reactant: CDMT00062
is version of: GO:0030163
fast: false
reversible: false
name: cP7_degr

CDMT00063
type: SpeciesReference
stoichiometry: 1.0
species: s16

CDMT00062
type: SpeciesReference
stoichiometry: 1.0
species: cP7

s23
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s23

ORG:
  orgname: Edinburgh University
n:
  given: Alexandra
  family: Pokhilko

q3
type: Parameter
constant: true
value: 2.8
name: q3

s35
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s35

p9
type: Parameter
constant: true
value: 0.8
name: p9

g1
type: Parameter
constant: true
value: 0.1
name: g1

cE4 degr
type: Reaction
modifier: CDMT00112
product: CDMT00110
modifier: CDMT00114
is version of: GO:0030163
modifier: CDMT00113
name: cE4_degr
fast: false
reversible: false
kinetic law: CDMT00115
modifier: CDMT00111
reactant: CDMT00109

CDMT00110
type: SpeciesReference
stoichiometry: 1.0
species: s28

CDMT00109
type: SpeciesReference
stoichiometry: 1.0
species: cE4

m9
type: Parameter
constant: true
value: 1.1
name: m9

p27
type: Parameter
constant: true
value: 0.8
name: p27

cL trsl
type: Reaction
kinetic law: CDMT00016
modifier: CDMT00015
product: CDMT00014
reactant: CDMT00013
is version of: GO:0006412
fast: false
reversible: false
name: cL_trsl

cL m
type: Species
encodes: Q6R0H1
in compartment: def
boundary condition: false
initial amount: NaN
name: cL_m
is version of: CHEBI:33699
constant: false
encodes: P92973
initial concentration: 1.0151
has only substance units: false
is: SBO:0000278

CDMT00014
type: SpeciesReference
stoichiometry: 1.0
species: cL

CDMT00013
type: SpeciesReference
stoichiometry: 1.0
species: s3

n5
type: Parameter
constant: true
value: 0.23
name: n5

E34
type: Parameter
constant: true
value: 1.0
name: E34

cP degr
type: Reaction
kinetic law: CDMT00032
product: CDMT00031
reactant: CDMT00030
is version of: GO:0030163
fast: false
reversible: false
name: cP_degr

CDMT00031
type: SpeciesReference
stoichiometry: 1.0
species: s8

s8
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s8

CDMT00030
type: SpeciesReference
stoichiometry: 1.0
species: cP

parameter 7
type: Parameter
constant: true
units: time
value: 12.0
name: photoPeriod

m27
type: Parameter
constant: true
value: 0.1
name: m27

default
type: Compartment
is version of: BTO:0000316
is: SBO:0000290
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0

m33
type: Parameter
constant: true
value: 13.0
name: m33

p23
type: Parameter
constant: true
value: 0.37
name: p23

cE4 m trscr
type: Reaction
name: cE4_m_trscr
modifier: CDMT00099
reactant: CDMT00097
fast: false
product: CDMT00098
modifier: CDMT00100
kinetic law: CDMT00101
is version of: GO:0009299
reversible: false

CDMT00097
type: SpeciesReference
stoichiometry: 1.0
species: s25

CDMT00098
type: SpeciesReference
stoichiometry: 1.0
species: cE4 m

COPASI4
type: Parameter
constant: true
value: 2.0
name: d

m12
type: Parameter
constant: true
value: 1.0
name: m12

cL m degr
type: Reaction
kinetic law: CDMT00012
product: CDMT00011
reactant: CDMT00010
is version of: GO:0006402
fast: false
reversible: false
name: cL_m_degr

CDMT00011
type: SpeciesReference
stoichiometry: 1.0
species: s2

s2
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s2

CDMT00010
type: SpeciesReference
stoichiometry: 1.0
species: cL m

s43
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s43

p1
type: Parameter
constant: true
value: 0.13
name: p1

p15
type: Parameter
constant: true
value: 3.0
name: p15

cCOP1c trsl
type: Reaction
kinetic law: CDMT00163
product: CDMT00162
reactant: CDMT00161
is version of: GO:0006412
fast: false
reversible: false
name: cCOP1c_trsl

CDMT00162
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1c

CDMT00161
type: SpeciesReference
stoichiometry: 1.0
species: s38

m3
type: Parameter
constant: true
value: 0.2
name: m3

s9
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s9

g12
type: Parameter
constant: true
value: 0.2
name: g12

m15
type: Parameter
constant: true
value: 0.7
name: m15

m21
type: Parameter
constant: true
value: 0.08
name: m21

s15
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s15

p11
type: Parameter
constant: true
value: 0.51
name: p11

cT trsl
type: Reaction
kinetic law: CDMT00091
modifier: CDMT00090
product: CDMT00089
reactant: CDMT00088
is version of: GO:0006412
fast: false
reversible: false
name: cT_trsl

CDMT00089
type: SpeciesReference
stoichiometry: 1.0
species: cT

cT
type: Species
name: cT
has only substance units: false
in compartment: def
is version of: Q9LKL2
constant: false
initial amount: NaN
is: SBO:0000252
initial concentration: 0.0435
boundary condition: false

CDMT00088
type: SpeciesReference
stoichiometry: 1.0
species: s23

cP9 m trscr
type: Reaction
modifier: CDMT00036
product: CDMT00034
modifier: CDMT00035
kinetic law: CDMT00038
name: cP9_m_trscr
is version of: GO:0009299
reversible: false
reactant: CDMT00033
fast: false
modifier: CDMT00037

CDMT00034
type: SpeciesReference
stoichiometry: 1.0
species: cP9 m

CDMT00033
type: SpeciesReference
stoichiometry: 1.0
species: s9

p6
type: Parameter
constant: true
value: 0.6
name: p6

http://identifiers.org/biomodels.db/BIOMD0000000412#c
type: Parameter
constant: true
value: 2.0
name: c

n2
type: Parameter
constant: true
value: 0.64
name: n2

g15
type: Parameter
constant: true
value: 0.4
name: g15

cE3 m trscr
type: Reaction
kinetic law: CDMT00119
modifier: CDMT00118
product: CDMT00117
reactant: CDMT00116
is version of: GO:0009299
fast: false
reversible: false
name: cE3_m_trscr

CDMT00117
type: SpeciesReference
stoichiometry: 1.0
species: cE3 m

CDMT00116
type: SpeciesReference
stoichiometry: 1.0
species: s29

cCOP1n degr
type: Reaction
kinetic law: CDMT00172
product: CDMT00171
reactant: CDMT00170
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1n_degr

CDMT00171
type: SpeciesReference
stoichiometry: 1.0
species: s40

s40
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s40

CDMT00170
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1n

parameter 4
type: Parameter
constant: true
units: time
value: 1.0
name: lightAmplitude

cP9 degr
type: Reaction
kinetic law: CDMT00048
product: CDMT00047
reactant: CDMT00046
is version of: GO:0030163
fast: false
reversible: false
name: cP9_degr

CDMT00047
type: SpeciesReference
stoichiometry: 1.0
species: s12

s12
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s12

CDMT00046
type: SpeciesReference
stoichiometry: 1.0
species: cP9

cG m degr
type: Reaction
kinetic law: CDMT00188
product: CDMT00187
reactant: CDMT00186
is version of: GO:0006402
fast: false
reversible: false
name: cG_m_degr

CDMT00187
type: SpeciesReference
stoichiometry: 1.0
species: s43

CDMT00186
type: SpeciesReference
stoichiometry: 1.0
species: cG m

m30
type: Parameter
constant: true
value: 3.0
name: m30

W3 CDTF: Tue Feb 12 15:40:34 GMT 2013

p20
type: Parameter
constant: true
value: 0.1
name: p20

n12
type: Parameter
constant: true
value: 12.5
name: n12

COPASI8
type: Parameter
constant: true
value: 1.0
name: EGn

g3
type: Parameter
constant: true
value: 0.6
name: g3

cZTL trsl
type: Reaction
kinetic law: CDMT00203
product: CDMT00202
reactant: CDMT00201
is version of: GO:0006412
fast: false
reversible: false
name: cZTL_trsl

CDMT00202
type: SpeciesReference
stoichiometry: 1.0
species: cZTL

CDMT00201
type: SpeciesReference
stoichiometry: 1.0
species: s46

p25
type: Parameter
constant: true
value: 8.0
name: p25

cNI trsl
type: Reaction
kinetic law: CDMT00076
modifier: CDMT00075
product: CDMT00074
reactant: CDMT00073
is version of: GO:0006412
fast: false
reversible: false
name: cNI_trsl

CDMT00074
type: SpeciesReference
stoichiometry: 1.0
species: cNI

CDMT00073
type: SpeciesReference
stoichiometry: 1.0
species: s19

s19
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s19

m19
type: Parameter
constant: true
value: 0.2
name: m19

cLUX m degr
type: Reaction
kinetic law: CDMT00149
product: CDMT00148
reactant: CDMT00147
is version of: GO:0006402
fast: false
reversible: false
name: cLUX_m_degr

CDMT00148
type: SpeciesReference
stoichiometry: 1.0
species: s35

CDMT00147
type: SpeciesReference
stoichiometry: 1.0
species: cLUX m

s4
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s4

cP7 m
type: Species
is: SBO:0000278
initial amount: NaN
name: cP7_m
is version of: CHEBI:33699
boundary condition: false
encodes: Q93WK5
has only substance units: false
constant: false
in compartment: def
initial concentration: 0.4016

p13
type: Parameter
constant: true
value: 0.1
name: p13

cEG degr
type: Reaction
kinetic law: CDMT00221
reactant: CDMT00214
modifier: CDMT00219
modifier: CDMT00216
reversible: false
name: cEG_degr
modifier: CDMT00217
fast: false
product: CDMT00215
modifier: CDMT00218
is version of: GO:0030163
modifier: CDMT00220

CDMT00214
type: SpeciesReference
stoichiometry: 1.0
species: cEG

CDMT00215
type: SpeciesReference
stoichiometry: 1.0
species: s49

s49
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s49

g7
type: Parameter
constant: true
value: 0.6
name: g7

cG m trscr
type: Reaction
fast: false
kinetic law: CDMT00185
reactant: CDMT00180
modifier: CDMT00184
product: CDMT00181
is version of: GO:0009299
name: cG_m_trscr
reversible: false
modifier: CDMT00183
modifier: CDMT00182

CDMT00180
type: SpeciesReference
stoichiometry: 1.0
species: s42

s42
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s42

CDMT00181
type: SpeciesReference
stoichiometry: 1.0
species: cG m

s11
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s11

cCOP1d activ
type: Reaction
kinetic law: CDMT00176
modifier: CDMT00175
product: CDMT00174
reactant: CDMT00173
is version of: MOD:00000
fast: false
reversible: false
name: cCOP1d_activ

CDMT00174
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1d

CDMT00173
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1n

cL m trscr
type: Reaction
modifier: CDMT00008
name: cL_m_trscr
modifier: CDMT00007
is version of: GO:0009299
modifier: CDMT00006
modifier: CDMT00005
product: CDMT00003
fast: false
modifier: CDMT00004
reversible: false
kinetic law: CDMT00009
reactant: CDMT00002

CDMT00003
type: SpeciesReference
stoichiometry: 1.0
species: cL m

CDMT00002
type: SpeciesReference
stoichiometry: 1.0
species: s1

s1
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s1

cG cZTL assoc
type: Reaction
kinetic law: CDMT00200
product: CDMT00199
reactant: CDMT00198
reactant: CDMT00197
is version of: GO:0006461
fast: false
reversible: true
name: cG_cZTL_assoc

CDMT00199
type: SpeciesReference
stoichiometry: 1.0
species: cZG

CDMT00198
type: SpeciesReference
stoichiometry: 1.0
species: cZTL

CDMT00197
type: SpeciesReference
stoichiometry: 1.0
species: cG

cE4 m degr
type: Reaction
kinetic law: CDMT00104
product: CDMT00103
reactant: CDMT00102
is version of: GO:0006402
fast: false
reversible: false
name: cE4_m_degr

CDMT00103
type: SpeciesReference
stoichiometry: 1.0
species: s26

CDMT00102
type: SpeciesReference
stoichiometry: 1.0
species: cE4 m

p29
type: Parameter
constant: true
value: 0.1
name: p29

n7
type: Parameter
constant: true
value: 0.2
name: n7

cP9 trsl
type: Reaction
kinetic law: CDMT00045
modifier: CDMT00044
product: CDMT00043
reactant: CDMT00042
is version of: GO:0006412
fast: false
reversible: false
name: cP9_trsl

CDMT00043
type: SpeciesReference
stoichiometry: 1.0
species: cP9

CDMT00042
type: SpeciesReference
stoichiometry: 1.0
species: s11

m35
type: Parameter
constant: true
value: 0.3
name: m35

cCOP1c degr
type: Reaction
kinetic law: CDMT00166
product: CDMT00165
reactant: CDMT00164
is version of: GO:0030163
fast: false
reversible: false
name: cCOP1c_degr

CDMT00165
type: SpeciesReference
stoichiometry: 1.0
species: s39

CDMT00164
type: SpeciesReference
stoichiometry: 1.0
species: cCOP1c

m38
type: Parameter
constant: true
value: 0.5
name: m38

p3
type: Parameter
constant: true
value: 0.1
name: p3

cT m degr
type: Reaction
kinetic law: CDMT00087
product: CDMT00086
reactant: CDMT00085
is version of: GO:0006402
fast: false
reversible: false
name: cT_m_degr

CDMT00086
type: SpeciesReference
stoichiometry: 1.0
species: s22

CDMT00085
type: SpeciesReference
stoichiometry: 1.0
species: cT m

p17
type: Parameter
constant: true
value: 4.8
name: p17

m5
type: Parameter
constant: true
value: 0.3
name: m5

g14
type: Parameter
constant: true
value: 0.004
name: g14

m17
type: Parameter
constant: true
value: 0.5
name: m17

cL degr
type: Reaction
kinetic law: CDMT00019
product: CDMT00018
reactant: CDMT00017
is version of: GO:0030163
fast: false
reversible: false
name: cL_degr

CDMT00018
type: SpeciesReference
stoichiometry: 1.0
species: s4

CDMT00017
type: SpeciesReference
stoichiometry: 1.0
species: cL

q2
type: Parameter
constant: true
value: 1.56
name: q2

p8
type: Parameter
constant: true
value: 0.6
name: p8

m8
type: Parameter
constant: true
value: 0.4
name: m8

p26
type: Parameter
constant: true
value: 0.3
name: p26

n4
type: Parameter
constant: true
value: 0.07
name: n4

parameter 6
type: Parameter
constant: true
units: time
value: 0.05
name: twilightPeriod

m26
type: Parameter
constant: true
value: 0.5
name: m26

s30
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s30

m32
type: Parameter
constant: true
value: 0.2
name: m32

cLUX trsl
type: Reaction
kinetic law: CDMT00153
modifier: CDMT00152
product: CDMT00151
reactant: CDMT00150
is version of: GO:0006412
fast: false
reversible: false
name: cLUX_trsl

CDMT00151
type: SpeciesReference
stoichiometry: 1.0
species: cLUX

CDMT00150
type: SpeciesReference
stoichiometry: 1.0
species: s36

s36
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s36

p22
type: Parameter
constant: true
value: 0.5
name: p22

n14
type: Parameter
constant: true
value: 0.1
name: n14

cP7 m degr
type: Reaction
kinetic law: CDMT00057
product: CDMT00056
reactant: CDMT00055
is version of: GO:0006402
fast: false
reversible: false
name: cP7_m_degr

CDMT00056
type: SpeciesReference
stoichiometry: 1.0
species: s14

CDMT00055
type: SpeciesReference
stoichiometry: 1.0
species: cP7 m

COPASI3
type: Parameter
constant: true
value: 1.8
name: m23

m11
type: Parameter
constant: true
value: 1.0
name: m11

m2
type: Parameter
constant: true
value: 0.24
name: m2

p31
type: Parameter
constant: true
value: 0.1
name: p31

http://identifiers.org/biomodels.db/BIOMD0000000412#f
type: Parameter
constant: true
value: 2.0
name: f

g11
type: Parameter
constant: true
value: 0.7
name: g11

COPASI6
type: Parameter
constant: true
units: time
value: 0.0
name: D

m14
type: Parameter
constant: true
value: 0.4
name: m14

s33
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s33

m20
type: Parameter
constant: true
value: 0.6
name: m20

cEC form
type: Reaction
modifier: CDMT00225
modifier: CDMT00226
reactant: CDMT00222
kinetic law: CDMT00229
modifier: CDMT00224
is version of: GO:0006461
product: CDMT00223
modifier: CDMT00228
reversible: false
modifier: CDMT00227
name: cEC_form
fast: false

CDMT00222
type: SpeciesReference
stoichiometry: 1.0
species: s50

CDMT00223
type: SpeciesReference
stoichiometry: 1.0
species: cEC

cT degr
type: Reaction
modifier: CDMT00094
product: CDMT00093
is version of: GO:0030163
reversible: false
reactant: CDMT00092
kinetic law: CDMT00096
name: cT_degr
modifier: CDMT00095
fast: false

CDMT00093
type: SpeciesReference
stoichiometry: 1.0
species: s24

CDMT00092
type: SpeciesReference
stoichiometry: 1.0
species: cT

p10
type: Parameter
constant: true
value: 0.54
name: p10

cNI m trscr
type: Reaction
product: CDMT00066
reversible: false
fast: false
is version of: GO:0009299
modifier: CDMT00067
kinetic law: CDMT00069
name: cNI_m_trscr
reactant: CDMT00065
modifier: CDMT00068

CDMT00066
type: SpeciesReference
stoichiometry: 1.0
species: cNI m

CDMT00065
type: SpeciesReference
stoichiometry: 1.0
species: s17

p5
type: Parameter
constant: true
value: 4.0
name: p5

http://identifiers.org/biomodels.db/BIOMD0000000412#b
type: Parameter
constant: true
value: 2.0
name: b

n1
type: Parameter
constant: true
value: 2.6
name: n1

s6
type: Species
is: SBO:0000291
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: def
name: s6

cP7 trsl
type: Reaction
kinetic law: CDMT00061
modifier: CDMT00060
product: CDMT00059
reactant: CDMT00058
is version of: GO:0006412
fast: false
reversible: false
name: cP7_trsl

CDMT00059
type: SpeciesReference
stoichiometry: 1.0
species: cP7

CDMT00058
type: SpeciesReference
stoichiometry: 1.0
species: s15

cNI m degr
type: Reaction
kinetic law: CDMT00072
product: CDMT00071
reactant: CDMT00070
is version of: GO:0006402
fast: false
reversible: false
name: cNI_m_degr

CDMT00071
type: SpeciesReference
stoichiometry: 1.0
species: s18

CDMT00070
type: SpeciesReference
stoichiometry: 1.0
species: cNI m

n11
type: Parameter
constant: true
value: 0.6
name: n11

COPASI7
type: Parameter
constant: true
value: 1.0
name: Gn

cLm degr
type: Reaction
kinetic law: CDMT00026
product: CDMT00025
reactant: CDMT00024
is version of: GO:0030163
fast: false
reversible: false
name: cLm_degr

CDMT00025
type: SpeciesReference
stoichiometry: 1.0
species: s6

CDMT00024
type: SpeciesReference
stoichiometry: 1.0
species: cLm

g9
type: Parameter
constant: true
value: 0.3
name: g9

p24
type: Parameter
constant: true
value: 10.0
name: p24

cE3 m degr
type: Reaction
kinetic law: CDMT00122
product: CDMT00121
reactant: CDMT00120
is version of: GO:0006402
fast: false
reversible: false
name: cE3_m_degr

CDMT00121
type: SpeciesReference
stoichiometry: 1.0
species: s30

CDMT00120
type: SpeciesReference
stoichiometry: 1.0
species: cE3 m

m18
type: Parameter
constant: true
value: 3.4
name: m18

cE3n degr
type: Reaction
kinetic law: CDMT00141
modifier: CDMT00136
modifier: CDMT00139
name: cE3n_degr
fast: false
is version of: GO:0030163
modifier: CDMT00138
reactant: CDMT00134
modifier: CDMT00140
reversible: false
product: CDMT00135
modifier: CDMT00137

CDMT00134
type: SpeciesReference
stoichiometry: 1.0
species: cE3n

CDMT00135
type: SpeciesReference
stoichiometry: 1.0
species: s33

cG degr
type: Reaction
kinetic law: CDMT00196
modifier: CDMT00195
product: CDMT00194
reactant: CDMT00193
is version of: GO:0030163
fast: false
reversible: false
name: cG_degr

CDMT00194
type: SpeciesReference
stoichiometry: 1.0
species: s45

CDMT00193
type: SpeciesReference
stoichiometry: 1.0
species: cG

cE3n import
type: Reaction
kinetic law: CDMT00133
product: CDMT00132
reactant: CDMT00131
is version of: GO:0015031
fast: false
reversible: false
name: cE3n_import

CDMT00132
type: SpeciesReference
stoichiometry: 1.0
species: cE3n

CDMT00131
type: SpeciesReference
stoichiometry: 1.0
species: cE3

p12
type: Parameter
constant: true
value: 3.4
name: p12

cP7 m trscr
type: Reaction
modifier: CDMT00053
is version of: GO:0009299
kinetic law: CDMT00054
name: cP7_m_trscr
reactant: CDMT00049
reversible: false
modifier: CDMT00052
modifier: CDMT00051
product: CDMT00050
fast: false

CDMT00049
type: SpeciesReference
stoichiometry: 1.0
species: s13

CDMT00050
type: SpeciesReference
stoichiometry: 1.0
species: cP7 m

W3 CDTF: Thu Aug 18 15:47:18 BST 2011

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah