BIOMD0000000406
type: SBMLModel
reaction: re41
parameter: kdcig
species: s72
parameter: lm
reaction: re5
reaction: re53
reaction: re34
parameter: Vawee dash
parameter: Jawee
parameter: Jipre
reaction: re18
parameter: Vi25
parameter: Vdc18
parameter: kdcycsrw
parameter: lp
reaction: re66
reaction: re38
species: s65
parameter: lcm
reaction: re30
parameter: kdcycslp
parameter: k255
reaction: re4
parameter: Srw1T
reaction: re23
parameter: kini dash2
parameter: Viwee dash
parameter: kdrumpuc
species: s47
parameter: kori
parameter: kmik
is: MODEL1111040000
parameter: kislp
reaction: re8
curated: true
parameter: kdcycsrw dash
parameter: Vimik dash3
units def: area
parameter: ksci1
reaction: re27
species: s89
species: s93
reaction: re60
parameter: Vdcyc
species: s149
parameter: kasrw dash
reaction: re22
parameter: kisrw dash4
reaction: re47
parameter: Vimik dash
compartment: default
rule: CDMT00230
volume units: volume
species: s153
species: s67
parameter: k25 dash
species: s77
species: s137
parameter: kaslp
species: s48
reaction: re46
parameter: kiie
parameter: kdcig dash
parameter: kscyc
species: s55
parameter: Jac10
parameter: kini dash3
species: s74
reaction: re15
parameter: kdci1
species: s80
species: s84
reaction: re42
parameter: ksrum
parameter: Vi25 dash2
reaction: re35
parameter: Jiwee
parameter: kipre
species: s79

re41
type: Reaction
kinetic law: CDMT00150
modifier: CDMT00149
product: CDMT00148
reactant: CDMT00147
is: SBO:0000179
fast: false
reversible: false

s9
type: Species
has only substance units: false
initial concentration: NaN
in compartment: default
name: Vdcyc
constant: true
is version of: P25009
boundary condition: true
initial amount: 0.0
is: SBO:0000252

default
type: Compartment
is version of: GO:0005623
is: SBO:0000290
constant: true
units: volume
size: 1.0
spatial dimensions: 3.0

volume
type: SBMLUnitsDef
unit: CDMT00224
name: volume

CDMT00224
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE

CDMT00148
type: SpeciesReference
stoichiometry: 1.0
species: s46

s46
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa4_degraded

CDMT00147
type: SpeciesReference
stoichiometry: 1.0
species: s60

s60
type: Species
is version of: P10815
initial amount: 0.1147007
initial concentration: NaN
is version of: C00562
in compartment: default
name: pCdc13
constant: false
is: SBO:0000252
has only substance units: false
boundary condition: false

kdcig
type: Parameter
is: SBO:0000356
constant: true
value: 0.02
name: kdcig

s72
type: Species
is version of: P30290
initial amount: 0.0
in compartment: default
constant: false
is: SBO:0000252
has only substance units: false
boundary condition: false
name: Mik1
initial concentration: NaN

lm
type: Parameter
is: SBO:0000361
constant: true
value: 100.0
name: lm

re5
type: Reaction
modifier: CDMT00016
product: CDMT00014
is: SBO:0000344
reactant: CDMT00013
modifier: CDMT00015
kinetic law: CDMT00017
fast: false
reversible: false

s56
type: Species
in compartment: default
has only substance units: false
constant: false
is version of: P10815
initial concentration: NaN
initial amount: 0.0439902
boundary condition: false
name: Cdc13
is: SBO:0000252

CDMT00014
type: SpeciesReference
stoichiometry: 1.0
species: s50

s50
type: Species
is: SBO:0000014
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.00127807
in compartment: default
name: IE

CDMT00013
type: SpeciesReference
stoichiometry: 1.0
species: s51

s51
type: Species
is: SBO:0000014
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: iIE

s75
type: Species
name: Cig1
in compartment: default
is: SBO:0000252
has only substance units: false
is version of: P24865
constant: false
initial concentration: NaN
initial amount: 0.0
boundary condition: false

re53
type: Reaction
kinetic law: CDMT00183
product: CDMT00182
reactant: CDMT00181
is: SBO:0000179
fast: false
reversible: false

CDMT00182
type: SpeciesReference
stoichiometry: 1.0
species: s93

s93
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa370_degraded

CDMT00181
type: SpeciesReference
stoichiometry: 1.0
species: s81

s81
type: Species
in compartment: default
boundary condition: false
name: Clp1
constant: false
is: SBO:0000252
is version of: Q10299
initial concentration: NaN
initial amount: 0.0
has only substance units: false

re34
type: Reaction
kinetic law: CDMT00120
modifier: CDMT00119
product: CDMT00118
reactant: CDMT00117
is: SBO:0000344
fast: false
reversible: false

s71
type: Species
is: SBO:0000252
name: Cdc10
has only substance units: false
initial amount: 0.0
in compartment: default
is version of: P01129
initial concentration: NaN
boundary condition: false
constant: false

CDMT00118
type: SpeciesReference
stoichiometry: 1.0
species: s72

CDMT00117
type: SpeciesReference
stoichiometry: 1.0
species: s73

s73
type: Species
is version of: P30290
has only substance units: false
boundary condition: true
is: SBO:0000252
in compartment: default
constant: false
initial concentration: NaN
initial amount: 0.0
name: mik1+

Vawee dash
type: Parameter
is: SBO:0000363
constant: true
value: 0.24
name: Vawee'

Jawee
type: Parameter
is: SBO:0000363
constant: true
value: 0.04
name: Jawee

Jipre
type: Parameter
is: SBO:0000261
constant: true
value: 0.01
name: Jipre

re18
type: Reaction
product: CDMT00052
kinetic law: CDMT00055
modifier: CDMT00053
reactant: CDMT00051
name: Cdc13_Dephosphorylation
reversible: false
fast: false
modifier: CDMT00054
is: SBO:0000330

CDMT00052
type: SpeciesReference
stoichiometry: 1.0
species: s161

s161
type: Species
has part: P40380
name: Cdc13-Rum1
initial amount: 0.0165018
has part: P10815
has only substance units: false
is: SBO:0000297
in compartment: default
initial concentration: NaN
constant: false
boundary condition: false

s64
type: Species
boundary condition: false
has only substance units: false
initial concentration: NaN
is version of: P32587
name: Pyp3
constant: false
initial amount: 0.0
is: SBO:0000252
in compartment: default

CDMT00051
type: SpeciesReference
stoichiometry: 1.0
species: s137

s137
type: Species
boundary condition: false
initial amount: 0.0432273
has part: P40380
in compartment: default
initial concentration: NaN
constant: false
has only substance units: false
has part: P10815
is: SBO:0000297
name: Cdc13p-Rum1

s83
type: Species
name: Cdc25
has only substance units: false
boundary condition: false
in compartment: default
constant: false
is: SBO:0000252
initial amount: 0.0
initial concentration: NaN
is version of: P06652

Vi25
type: Parameter
is: SBO:0000261
constant: true
value: 0.3
name: Vi25

Vdc18
type: Parameter
constant: false
value: 0.0
name: Vdc18

kdcycsrw
type: Parameter
is: SBO:0000356
constant: true
value: 1.0
name: kdcycsrw

lp
type: Parameter
is: SBO:0000361
constant: true
value: 500.0
name: lp

re66
type: Reaction
fast: false
kinetic law: CDMT00213
reversible: false
modifier: CDMT00211
modifier: CDMT00001
modifier: CDMT00212
product: CDMT00210
reactant: CDMT00209
is: SBO:0000344

s67
type: Species
initial amount: 0.0
boundary condition: false
is version of: P36630
name: Cig2
in compartment: default
constant: false
has only substance units: false
initial concentration: NaN
is: SBO:0000252

s63
type: Species
is version of: P36630
boundary condition: false
initial concentration: NaN
constant: false
initial amount: 0.0
in compartment: default
name: Cig2p
has only substance units: false
is: SBO:0000252
is version of: C00562

CDMT00210
type: SpeciesReference
stoichiometry: 1.0
species: s90

s90
type: Species
initial concentration: NaN
is version of: GO:0000808
initial amount: 0.0
boundary condition: false
has only substance units: false
constant: false
is: SBO:0000297
in compartment: default
name: postRC

CDMT00209
type: SpeciesReference
stoichiometry: 1.0
species: s89

s89
type: Species
constant: false
initial amount: 0.0
in compartment: default
boundary condition: true
name: preRC
initial concentration: NaN
is: SBO:0000297
is version of: GO:0005656
has only substance units: false

re38
type: Reaction
kinetic law: CDMT00138
modifier: CDMT00137
product: CDMT00136
reactant: CDMT00135
is: SBO:0000344
fast: false
reversible: false

s48
type: Species
has only substance units: false
initial amount: 6.33821E-5
is: SBO:0000252
constant: false
is version of: P78972
in compartment: default
name: Slp1A
boundary condition: false
initial concentration: NaN

CDMT00136
type: SpeciesReference
stoichiometry: 1.0
species: s81

CDMT00135
type: SpeciesReference
stoichiometry: 1.0
species: s78

s78
type: Species
is: SBO:0000252
initial concentration: NaN
initial amount: 0.0
is version of: Q10299
name: Clp1+
in compartment: default
constant: false
has only substance units: false
boundary condition: true

s65
type: Species
is version of: O13286
constant: false
name: iSrw1
initial amount: 0.0
initial concentration: NaN
is: SBO:0000252
in compartment: default
has only substance units: false
boundary condition: true

lcm
type: Parameter
is: SBO:0000361
constant: true
value: 1.0
name: lcm

re30
type: Reaction
fast: false
modifier: CDMT00104
reversible: false
product: CDMT00102
is: SBO:0000180
product: CDMT00103
reactant: CDMT00101
kinetic law: CDMT00105

s4
type: Species
is: SBO:0000252
constant: true
initial concentration: NaN
boundary condition: true
in compartment: default
has only substance units: false
is version of: P40380
name: Vdrum
initial amount: 0.0

CDMT00102
type: SpeciesReference
stoichiometry: 1.0
species: s67

CDMT00103
type: SpeciesReference
stoichiometry: 1.0
species: s61

s61
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa161_degraded

CDMT00101
type: SpeciesReference
stoichiometry: 1.0
species: s149

s149
type: Species
has part: P36630
initial amount: 0.0
has part: P40380
in compartment: default
initial concentration: NaN
constant: false
boundary condition: false
name: Cig2-Rum1
is: SBO:0000297
has only substance units: false

kdcycslp
type: Parameter
is: SBO:0000356
constant: true
value: 1.0
name: kdcycslp

k255
type: Parameter
is: SBO:0000009
constant: true
value: 0.1
name: k255

re4
type: Reaction
modifier: CDMT00009
modifier: CDMT00010
kinetic law: CDMT00012
product: CDMT00007
is: SBO:0000344
reactant: CDMT00006
modifier: CDMT00011
fast: false
modifier: CDMT00008
reversible: false

s49
type: Species
boundary condition: false
is version of: P25009
initial concentration: NaN
in compartment: default
name: Puc1
initial amount: 0.0
has only substance units: false
is: SBO:0000252
constant: false

CDMT00007
type: SpeciesReference
stoichiometry: 1.0
species: s65

CDMT00006
type: SpeciesReference
stoichiometry: 1.0
species: s47

s47
type: Species
is version of: O13286
has only substance units: false
initial concentration: NaN
is: SBO:0000252
constant: false
in compartment: default
boundary condition: false
initial amount: 0.00239076
name: Srw1

Srw1T
type: Parameter
is: SBO:0000196
constant: true
value: 1.0
name: Srw1T

re23
type: Reaction
fast: false
product: CDMT00076
reversible: false
modifier: CDMT00077
reactant: CDMT00074
is: SBO:0000180
product: CDMT00075
kinetic law: CDMT00078

CDMT00076
type: SpeciesReference
stoichiometry: 1.0
species: s94

s94
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa44_degraded

CDMT00074
type: SpeciesReference
stoichiometry: 1.0
species: s149

CDMT00075
type: SpeciesReference
stoichiometry: 1.0
species: s166

s166
type: Species
is version of: P40380
is: SBO:0000252
boundary condition: false
initial amount: 0.0
initial concentration: NaN
name: Rum1
has only substance units: false
in compartment: default
constant: false

kini dash2
type: Parameter
is: SBO:0000009
constant: true
value: 10.0
name: kini''

Viwee dash
type: Parameter
is: SBO:0000261
constant: true
value: 0.0
name: Viwee'

kdrumpuc
type: Parameter
is: SBO:0000356
constant: true
value: 0.1
name: kdrumpuc

kori
type: Parameter
is: SBO:0000009
constant: true
value: 125.0
name: kori

kmik
type: Parameter
is: SBO:0000009
constant: false
value: 0.0
name: kmik

kislp
type: Parameter
is: SBO:0000261
constant: true
value: 0.2
name: kislp

re8
type: Reaction
kinetic law: CDMT00027
product: CDMT00026
reactant: CDMT00025
is: SBO:0000344
fast: false
reversible: false

CDMT00026
type: SpeciesReference
stoichiometry: 1.0
species: s66

s66
type: Species
is: SBO:0000252
initial amount: 0.0
initial concentration: NaN
is version of: P78972
name: iSlp1
in compartment: default
constant: false
has only substance units: false
boundary condition: true

CDMT00025
type: SpeciesReference
stoichiometry: 1.0
species: s48

kdcycsrw dash
type: Parameter
is: SBO:0000356
constant: true
value: 1.0E-4
name: kdcycsrw'

Vimik dash3
type: Parameter
is: SBO:0000261
constant: true
value: 0.25
name: Vimik'''

area
type: SBMLUnitsDef
unit: CDMT00225
name: area

CDMT00225
type: SBMLUnit
exponent: 2.0
scale: 0
multipler: 1.0
kind: METRE

ksci1
type: Parameter
is: SBO:0000009
constant: true
value: 0.0015
name: ksci1

re27
type: Reaction
name: Cdc13_Dephosphorylation
reversible: false
fast: false
kinetic law: CDMT00092
product: CDMT00089
reactant: CDMT00088
modifier: CDMT00091
modifier: CDMT00090
is: SBO:0000330

CDMT00089
type: SpeciesReference
stoichiometry: 1.0
species: s149

CDMT00088
type: SpeciesReference
stoichiometry: 1.0
species: s153

s153
type: Species
is: SBO:0000297
constant: false
initial amount: 0.0
has only substance units: false
in compartment: default
name: Cig2p-Rum1
initial concentration: NaN
has part: P40380
boundary condition: false
has part: P36630

re60
type: Reaction
kinetic law: CDMT00205
modifier: CDMT00204
product: CDMT00203
reactant: CDMT00202
is: SBO:0000179
fast: false
reversible: false

CDMT00203
type: SpeciesReference
stoichiometry: 1.0
species: s61

CDMT00202
type: SpeciesReference
stoichiometry: 1.0
species: s166

Vdcyc
type: Parameter
constant: false
value: 0.0
name: Vdcyc

kasrw dash
type: Parameter
is: SBO:0000363
constant: true
value: 30.0
name: kasrw'

re22
type: Reaction
kinetic law: CDMT00073
product: CDMT00072
reactant: CDMT00071
reactant: CDMT00070
is: SBO:0000526
fast: false
reversible: true
name: Rum1+Cdc13_association

CDMT00072
type: SpeciesReference
stoichiometry: 1.0
species: s149

CDMT00071
type: SpeciesReference
stoichiometry: 1.0
species: s67

CDMT00070
type: SpeciesReference
stoichiometry: 1.0
species: s166

kisrw dash4
type: Parameter
is: SBO:0000261
constant: true
value: 4.0
name: kisrw''''

re47
type: Reaction
kinetic law: CDMT00176
modifier: CDMT00175
product: CDMT00174
reactant: CDMT00173
is: SBO:0000344
fast: false
reversible: false

CDMT00174
type: SpeciesReference
stoichiometry: 1.0
species: s84

s84
type: Species
is: SBO:0000252
name: Cdc18T
is version of: P41411
initial concentration: NaN
constant: false
has only substance units: false
boundary condition: false
in compartment: default
initial amount: 0.0

CDMT00173
type: SpeciesReference
stoichiometry: 1.0
species: s85

s85
type: Species
constant: false
has only substance units: false
in compartment: default
initial amount: 0.0
initial concentration: NaN
name: cdc18+
boundary condition: true
is: SBO:0000252
is version of: P41411

Vimik dash
type: Parameter
is: SBO:0000261
constant: true
value: 10.0
name: Vimik'

k25 dash
type: Parameter
is: SBO:0000009
constant: true
value: 0.01
name: k25'

s77
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa353_degraded

kaslp
type: Parameter
is: SBO:0000363
constant: true
value: 1.0
name: kaslp

re46
type: Reaction
modifier: CDMT00171
is: SBO:0000344
reversible: false
fast: false
reactant: CDMT00168
kinetic law: CDMT00172
modifier: CDMT00170
product: CDMT00169

s157
type: Species
boundary condition: true
has only substance units: false
in compartment: default
name: UDNA
is: SBO:0000251
is version of: CHEBI:16991
constant: true
initial concentration: NaN
initial amount: 0.0

CDMT00168
type: SpeciesReference
stoichiometry: 1.0
species: s83

CDMT00169
type: SpeciesReference
stoichiometry: 1.0
species: s82

s82
type: Species
name: iCdc25
has only substance units: false
in compartment: default
initial concentration: NaN
is version of: P06652
constant: false
is: SBO:0000252
initial amount: 0.0
boundary condition: true

kiie
type: Parameter
is: SBO:0000261
constant: true
value: 0.04
name: kiie

kdcig dash
type: Parameter
is: SBO:0000356
constant: true
value: 1.0
name: kdcig'

kscyc
type: Parameter
is: SBO:0000009
constant: true
value: 0.03
name: kscyc

s55
type: Species
is version of: P36630
is: SBO:0000252
in compartment: default
initial concentration: NaN
has only substance units: false
constant: false
name: cig2+
boundary condition: true
initial amount: 0.0

Jac10
type: Parameter
is: SBO:0000363
constant: true
value: 0.01
name: Jac10

kini dash3
type: Parameter
is: SBO:0000009
constant: true
value: 0.0
name: kini'''

s74
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa347_degraded

re15
type: Reaction
is: SBO:0000180
modifier: CDMT00039
product: CDMT00037
reversible: false
fast: false
product: CDMT00038
kinetic law: CDMT00040
reactant: CDMT00036

CDMT00037
type: SpeciesReference
stoichiometry: 1.0
species: s166

CDMT00038
type: SpeciesReference
stoichiometry: 1.0
species: s46

CDMT00036
type: SpeciesReference
stoichiometry: 1.0
species: s161

kdci1
type: Parameter
is: SBO:0000356
constant: true
value: 0.1
name: kdci1

s80
type: Species
has only substance units: false
name: Wee1
is version of: P07527
initial concentration: NaN
in compartment: default
constant: false
boundary condition: false
is: SBO:0000252
initial amount: 0.0

re42
type: Reaction
kinetic law: CDMT00154
modifier: CDMT00153
product: CDMT00152
reactant: CDMT00151
is: SBO:0000179
fast: false
reversible: false

CDMT00152
type: SpeciesReference
stoichiometry: 1.0
species: s46

CDMT00151
type: SpeciesReference
stoichiometry: 1.0
species: s56

ksrum
type: Parameter
is: SBO:0000009
constant: true
value: 1.0
name: ksrum

Vi25 dash2
type: Parameter
is: SBO:0000261
constant: true
value: 1.0
name: Vi25''

re35
type: Reaction
modifier: CDMT00123
reversible: false
fast: false
kinetic law: CDMT00126
product: CDMT00122
modifier: CDMT00124
is: SBO:0000179
modifier: CDMT00125
reactant: CDMT00121

CDMT00122
type: SpeciesReference
stoichiometry: 1.0
species: s74

CDMT00121
type: SpeciesReference
stoichiometry: 1.0
species: s72

Jiwee
type: Parameter
is: SBO:0000261
constant: true
value: 0.03
name: Jiwee

kipre
type: Parameter
is: SBO:0000261
constant: true
value: 1.0
name: kipre

s79
type: Species
in compartment: default
initial concentration: NaN
has only substance units: false
boundary condition: true
is: SBO:0000252
constant: true
initial amount: 0.0
is version of: P07527
name: iWee1

re39
type: Reaction
kinetic law: CDMT00142
modifier: CDMT00141
product: CDMT00140
reactant: CDMT00139
is: SBO:0000344
fast: false
reversible: false

CDMT00140
type: SpeciesReference
stoichiometry: 1.0
species: s80

CDMT00139
type: SpeciesReference
stoichiometry: 1.0
species: s79

re56
type: Reaction
is: SBO:0000330
modifier: CDMT00191
kinetic law: CDMT00192
fast: false
product: CDMT00189
modifier: CDMT00190
reversible: false
reactant: CDMT00188

CDMT00189
type: SpeciesReference
stoichiometry: 1.0
species: s56

CDMT00188
type: SpeciesReference
stoichiometry: 1.0
species: s60

kmik dash
type: Parameter
is: SBO:0000009
constant: true
value: 0.01
name: kmik'

ko18
type: Parameter
is: SBO:0000009
constant: true
value: 100.0
name: ko18

Jiie
type: Parameter
is: SBO:0000261
constant: true
value: 0.01
name: Jiie

kisrw dash2
type: Parameter
is: SBO:0000261
constant: true
value: 1.0
name: kisrw''

s92
type: Species
initial amount: 0.0
is: SBO:0000251
initial concentration: NaN
has only substance units: false
in compartment: default
name: irepldna
boundary condition: true
constant: false
is version of: CHEBI:16991

kdc18c13
type: Parameter
is: SBO:0000356
constant: true
value: 0.45
name: kdc18c13

ksflp
type: Parameter
is: SBO:0000009
constant: true
value: 0.0015
name: ksflp

kdrumci1
type: Parameter
is: SBO:0000356
constant: true
value: 1.0
name: kdrumci1

Cdc10T
type: Parameter
is: SBO:0000196
constant: true
value: 1.0
name: Cdc10T

kdci1 dash2
type: Parameter
is: SBO:0000356
constant: true
value: 0.2
name: kdci1''

http://identifiers.org/biomodels.db/BIOMD0000000406#n
type: Parameter
is: SBO:0000361
constant: true
value: 4.0
name: n

Jasrw
type: Parameter
is: SBO:0000363
constant: true
value: 0.01
name: Jasrw

re12
type: Reaction
kinetic law: CDMT00030
product: CDMT00029
reactant: CDMT00028
is: SBO:0000393
fast: false
reversible: false
name: Cdc13_Synthesis

CDMT00029
type: SpeciesReference
stoichiometry: 1.0
species: s56

CDMT00028
type: SpeciesReference
stoichiometry: 1.0
species: s57

s57
type: Species
boundary condition: true
is: SBO:0000252
is version of: P10815
initial concentration: NaN
in compartment: default
name: cdc13+
constant: false
has only substance units: false
initial amount: 0.0

k25
type: Parameter
constant: false
value: 0.0
name: k25

time
type: SBMLUnitsDef
unit: CDMT00227
name: time

CDMT00227
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND

s70
type: Species
name: iCdc10
in compartment: default
is version of: P01129
initial amount: 0.0
boundary condition: true
constant: false
has only substance units: true
initial concentration: NaN
is: SBO:0000252

kdci1 dash
type: Parameter
is: SBO:0000356
constant: true
value: 5.0
name: kdci1'

Vawee dash2
type: Parameter
is: SBO:0000363
constant: true
value: 1.0
name: Vawee''

Slp1T
type: Parameter
is: SBO:0000196
constant: true
value: 1.0
name: Slp1T

Ji25
type: Parameter
is: SBO:0000261
constant: true
value: 0.03
name: Ji25

re3
type: Reaction
kinetic law: CDMT00005
modifier: CDMT00004
product: CDMT00003
reactant: CDMT00002
is: SBO:0000344
fast: false
reversible: false

CDMT00003
type: SpeciesReference
stoichiometry: 1.0
species: s47

CDMT00002
type: SpeciesReference
stoichiometry: 1.0
species: s65

ksflp dash
type: Parameter
is: SBO:0000009
constant: true
value: 0.015
name: ksflp'

kmik dash2
type: Parameter
is: SBO:0000009
constant: true
value: 4.0
name: kmik''

re16
type: Reaction
name: Trim_Dissociation_Rum1degradation
is: SBO:0000180
product: CDMT00042
reactant: CDMT00041
product: CDMT00043
reversible: false
fast: false
modifier: CDMT00044
kinetic law: CDMT00045

CDMT00042
type: SpeciesReference
stoichiometry: 1.0
species: s56

CDMT00041
type: SpeciesReference
stoichiometry: 1.0
species: s161

CDMT00043
type: SpeciesReference
stoichiometry: 1.0
species: s61

Jaslp
type: Parameter
is: SBO:0000363
constant: true
value: 0.01
name: Jaslp

BB
type: Parameter
constant: false
value: 0.0
name: BB

re43
type: Reaction
reversible: false
kinetic law: CDMT00159
modifier: CDMT00158
is: SBO:0000216
product: CDMT00156
modifier: CDMT00157
reactant: CDMT00155
fast: false

CDMT00156
type: SpeciesReference
stoichiometry: 1.0
species: s137

CDMT00155
type: SpeciesReference
stoichiometry: 1.0
species: s161

s130
type: Species
is: SBO:0000252
boundary condition: false
constant: false
is version of: P41411
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: Vdc18

ko18r
type: Parameter
is: SBO:0000009
constant: true
value: 1.0
name: ko18r

re7
type: Reaction
kinetic law: CDMT00024
modifier: CDMT00023
product: CDMT00022
reactant: CDMT00021
is: SBO:0000344
fast: false
reversible: false

CDMT00022
type: SpeciesReference
stoichiometry: 1.0
species: s48

CDMT00021
type: SpeciesReference
stoichiometry: 1.0
species: s66

re36
type: Reaction
kinetic law: CDMT00129
product: CDMT00128
reactant: CDMT00127
is: SBO:0000344
fast: false
reversible: false

CDMT00128
type: SpeciesReference
stoichiometry: 1.0
species: s75

CDMT00127
type: SpeciesReference
stoichiometry: 1.0
species: s76

s76
type: Species
initial concentration: NaN
is: SBO:0000252
in compartment: default
has only substance units: false
boundary condition: true
is version of: P24865
constant: false
initial amount: 0.0
name: cig1+

W3 CDTF: Thu Jan 12 13:27:10 GMT 2012

Viwee dash2
type: Parameter
is: SBO:0000261
constant: true
value: 1.0
name: Viwee''

Jic10
type: Parameter
is: SBO:0000261
constant: true
value: 0.01
name: Jic10

kdc18
type: Parameter
is: SBO:0000356
constant: true
value: 0.001
name: kdc18

kaie
type: Parameter
is: SBO:0000363
constant: true
value: 0.0975
name: kaie

kipre dash
type: Parameter
is: SBO:0000261
constant: true
value: 1.0
name: kipre'

re68
type: Reaction
kinetic law: CDMT00222
product: CDMT00221
reactant: CDMT00220
is: SBO:0000204
fast: false
reversible: false

CDMT00221
type: SpeciesReference
stoichiometry: 1.0
species: s91

s91
type: Species
constant: false
is version of: CHEBI:16991
initial amount: 0.0
name: repldna
has only substance units: false
boundary condition: false
in compartment: default
is: SBO:0000251
initial concentration: NaN

CDMT00220
type: SpeciesReference
stoichiometry: 1.0
species: s90

kasrw
type: Parameter
is: SBO:0000363
constant: true
value: 1.25
name: kasrw

re32
type: Reaction
kinetic law: CDMT00113
modifier: CDMT00112
product: CDMT00111
reactant: CDMT00110
is: SBO:0000344
fast: false
reversible: false

CDMT00111
type: SpeciesReference
stoichiometry: 1.0
species: s70

CDMT00110
type: SpeciesReference
stoichiometry: 1.0
species: s71

re6
type: Reaction
kinetic law: CDMT00020
product: CDMT00019
reactant: CDMT00018
is: SBO:0000344
fast: false
reversible: false

CDMT00019
type: SpeciesReference
stoichiometry: 1.0
species: s51

CDMT00018
type: SpeciesReference
stoichiometry: 1.0
species: s50

re25
type: Reaction
kinetic law: CDMT00087
reversible: false
product: CDMT00084
is: SBO:0000180
modifier: CDMT00086
product: CDMT00085
fast: false
reactant: CDMT00083

CDMT00084
type: SpeciesReference
stoichiometry: 1.0
species: s166

CDMT00085
type: SpeciesReference
stoichiometry: 1.0
species: s94

CDMT00083
type: SpeciesReference
stoichiometry: 1.0
species: s153

kac10
type: Parameter
is: SBO:0000363
constant: true
value: 0.125
name: kac10

kdrumc13 dash
type: Parameter
is: SBO:0000356
constant: true
value: 5.0
name: kdrumc13'

kscig
type: Parameter
is: SBO:0000009
constant: true
value: 0.002
name: kscig

preRC
type: Parameter
constant: false
value: 0.0
name: preRC

re45
type: Reaction
kinetic law: CDMT00167
modifier: CDMT00166
product: CDMT00165
reactant: CDMT00164
is: SBO:0000344
fast: false
reversible: false

CDMT00165
type: SpeciesReference
stoichiometry: 1.0
species: s83

CDMT00164
type: SpeciesReference
stoichiometry: 1.0
species: s82

k dash
type: Parameter
is: SBO:0000009
constant: true
value: 10.0
name: k'

re57
type: Reaction
product: CDMT00194
modifier: CDMT00195
reactant: CDMT00193
fast: false
modifier: CDMT00196
reversible: false
kinetic law: CDMT00197
is: SBO:0000216

CDMT00194
type: SpeciesReference
stoichiometry: 1.0
species: s60

CDMT00193
type: SpeciesReference
stoichiometry: 1.0
species: s56

kisrw dash3
type: Parameter
is: SBO:0000261
constant: true
value: 4.0
name: kisrw'''

re29
type: Reaction
kinetic law: CDMT00100
modifier: CDMT00099
product: CDMT00098
reactant: CDMT00097
is: SBO:0000180
fast: false
reversible: false

CDMT00098
type: SpeciesReference
stoichiometry: 1.0
species: s63

CDMT00097
type: SpeciesReference
stoichiometry: 1.0
species: s153

length
type: SBMLUnitsDef
unit: CDMT00226
name: length

CDMT00226
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: METRE

UDNA
type: Parameter
constant: false
value: 0.0
name: UDNA

beta
type: Parameter
is: SBO:0000361
constant: true
value: 10.0
name: beta

kpyp
type: Parameter
is: SBO:0000009
constant: true
value: 0.6
name: kpyp

re62
type: Reaction
kinetic law: CDMT00208
product: CDMT00207
reactant: CDMT00206
is: SBO:0000344
fast: false
reversible: false

CDMT00207
type: SpeciesReference
stoichiometry: 1.0
species: s166

CDMT00206
type: SpeciesReference
stoichiometry: 1.0
species: s52

s52
type: Species
initial amount: 0.0
initial concentration: NaN
in compartment: default
constant: false
has only substance units: false
is version of: P40380
boundary condition: true
is: SBO:0000252
name: rum1+

re31
type: Reaction
kinetic law: CDMT00109
modifier: CDMT00108
product: CDMT00107
reactant: CDMT00106
is: SBO:0000179
fast: false
reversible: false

CDMT00107
type: SpeciesReference
stoichiometry: 1.0
species: s94

CDMT00106
type: SpeciesReference
stoichiometry: 1.0
species: s63

krepl
type: Parameter
is: SBO:0000009
constant: true
value: 2.0
name: krepl

re24
type: Reaction
kinetic law: CDMT00082
product: CDMT00081
reactant: CDMT00080
reactant: CDMT00079
is: SBO:0000526
fast: false
reversible: true
name: Rum1+Cdc13_association

CDMT00081
type: SpeciesReference
stoichiometry: 1.0
species: s153

CDMT00080
type: SpeciesReference
stoichiometry: 1.0
species: s63

CDMT00079
type: SpeciesReference
stoichiometry: 1.0
species: s166

kscig dash
type: Parameter
is: SBO:0000009
constant: true
value: 0.04
name: kscig'

Vi25 dash
type: Parameter
is: SBO:0000261
constant: true
value: 0.24
name: Vi25'

kisrw dash
type: Parameter
is: SBO:0000261
constant: true
value: 40.0
name: kisrw'

re44
type: Reaction
kinetic law: CDMT00163
modifier: CDMT00162
product: CDMT00161
reactant: CDMT00160
is: SBO:0000216
fast: false
reversible: false

CDMT00161
type: SpeciesReference
stoichiometry: 1.0
species: s153

CDMT00160
type: SpeciesReference
stoichiometry: 1.0
species: s149

Jaie
type: Parameter
is: SBO:0000363
constant: true
value: 0.01
name: Jaie

kdcyc
type: Parameter
is: SBO:0000356
constant: true
value: 0.018
name: kdcyc

s88
type: Species
is: SBO:0000291
constant: false
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: default
name: sa386_degraded

kwee
type: Parameter
constant: false
value: 0.0
name: kwee

Cdc25T
type: Parameter
is: SBO:0000196
constant: true
value: 1.0
name: Cdc25T

re28
type: Reaction
kinetic law: CDMT00096
modifier: CDMT00095
product: CDMT00094
reactant: CDMT00093
is: SBO:0000179
fast: false
reversible: false

CDMT00094
type: SpeciesReference
stoichiometry: 1.0
species: s94

CDMT00093
type: SpeciesReference
stoichiometry: 1.0
species: s67

kwee dash
type: Parameter
is: SBO:0000009
constant: true
value: 0.01
name: kwee'

Vimik
type: Parameter
is: SBO:0000261
constant: true
value: 0.75
name: Vimik

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

re20
type: Reaction
kinetic law: CDMT00063
modifier: CDMT00062
product: CDMT00061
reactant: CDMT00060
is: SBO:0000216
fast: false
reversible: false
name: Cdc13_Phosphorylation

CDMT00061
type: SpeciesReference
stoichiometry: 1.0
species: s63

CDMT00060
type: SpeciesReference
stoichiometry: 1.0
species: s67

kic10 dash
type: Parameter
is: SBO:0000261
constant: true
value: 3.0
name: kic10'

Vdrum
type: Parameter
constant: false
value: 0.0
name: Vdrum

re48
type: Reaction
kinetic law: CDMT00180
modifier: CDMT00179
product: CDMT00178
reactant: CDMT00177
is: SBO:0000179
fast: false
reversible: false

CDMT00178
type: SpeciesReference
stoichiometry: 1.0
species: s88

CDMT00177
type: SpeciesReference
stoichiometry: 1.0
species: s84

Jisrw
type: Parameter
is: SBO:0000261
constant: true
value: 0.01
name: Jisrw

ORG:
  orgname: Okayama University
n:
  given: Hisao
  family: Moriya

ksc18
type: Parameter
is: SBO:0000009
constant: true
value: 0.005
name: ksc18

kini dash
type: Parameter
is: SBO:0000009
constant: true
value: 10.0
name: kini_dash

re40
type: Reaction
kinetic law: CDMT00146
modifier: CDMT00145
product: CDMT00144
reactant: CDMT00143
is: SBO:0000344
fast: false
reversible: false

CDMT00144
type: SpeciesReference
stoichiometry: 1.0
species: s79

CDMT00143
type: SpeciesReference
stoichiometry: 1.0
species: s80

Puc1
type: Parameter
is: SBO:0000196
constant: true
value: 1.0
name: Puc1

lcp
type: Parameter
is: SBO:0000361
constant: true
value: 3.0
name: lcp

re33
type: Reaction
kinetic law: CDMT00116
product: CDMT00115
reactant: CDMT00114
is: SBO:0000344
fast: false
reversible: false

CDMT00115
type: SpeciesReference
stoichiometry: 1.0
species: s71

CDMT00114
type: SpeciesReference
stoichiometry: 1.0
species: s70

re17
type: Reaction
reactant: CDMT00046
kinetic law: CDMT00050
is: SBO:0000180
reversible: false
product: CDMT00048
fast: false
modifier: CDMT00049
product: CDMT00047

CDMT00046
type: SpeciesReference
stoichiometry: 1.0
species: s137

CDMT00048
type: SpeciesReference
stoichiometry: 1.0
species: s46

CDMT00047
type: SpeciesReference
stoichiometry: 1.0
species: s166

kdcycslp dash
type: Parameter
is: SBO:0000356
constant: true
value: 3.0E-4
name: kdcycslp'

Cdc18
type: Parameter
constant: false
value: 0.0
name: Cdc18

Jislp
type: Parameter
is: SBO:0000261
constant: true
value: 0.01
name: Jislp

kdrum
type: Parameter
is: SBO:0000356
constant: true
value: 0.4
name: kdrum

kdc18cig
type: Parameter
is: SBO:0000356
constant: true
value: 1.0
name: kdc18cig

Va25 dash2
type: Parameter
is: SBO:0000363
constant: true
value: 1.0
name: Va25''

Ja25
type: Parameter
is: SBO:0000363
constant: true
value: 0.03
name: Ja25

kpyp2
type: Parameter
is: SBO:0000009
constant: true
value: 0.01
name: kpyp2

Rad3
type: Parameter
is: SBO:0000361
constant: true
value: 1.0
name: Rad3

re37
type: Reaction
fast: false
is: SBO:0000179
reactant: CDMT00130
kinetic law: CDMT00134
modifier: CDMT00133
reversible: false
product: CDMT00131
modifier: CDMT00132

CDMT00130
type: SpeciesReference
stoichiometry: 1.0
species: s75

CDMT00131
type: SpeciesReference
stoichiometry: 1.0
species: s77

kdrumcig
type: Parameter
is: SBO:0000356
constant: true
value: 15.0
name: kdrumcig

kdrumc13
type: Parameter
is: SBO:0000356
constant: true
value: 50.0
name: kdrumc13

kdflp
type: Parameter
is: SBO:0000356
constant: true
value: 0.1
name: kdflp

chrom
type: Parameter
constant: false
value: 0.0
name: chrom

k25 dash2
type: Parameter
is: SBO:0000009
constant: true
value: 1.0
name: k25''

substance
type: SBMLUnitsDef
unit: CDMT00223
name: substance

CDMT00223
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: MOLE

Vamik dash
type: Parameter
is: SBO:0000363
constant: true
value: 0.75
name: Vamik'

kisrw
type: Parameter
is: SBO:0000261
constant: true
value: 1.5
name: kisrw

re58
type: Reaction
kinetic law: CDMT00201
product: CDMT00200
reactant: CDMT00199
reactant: CDMT00198
is: SBO:0000526
fast: false
reversible: true

CDMT00200
type: SpeciesReference
stoichiometry: 1.0
species: s137

CDMT00199
type: SpeciesReference
stoichiometry: 1.0
species: s60

CDMT00198
type: SpeciesReference
stoichiometry: 1.0
species: s166

Vimik dash2
type: Parameter
is: SBO:0000261
constant: true
value: 10.0
name: Vimik''

re19
type: Reaction
kinetic law: CDMT00059
modifier: CDMT00058
product: CDMT00057
reactant: CDMT00056
is: SBO:0000393
fast: false
reversible: false
name: Cdc13_Synthesis

CDMT00057
type: SpeciesReference
stoichiometry: 1.0
species: s67

CDMT00056
type: SpeciesReference
stoichiometry: 1.0
species: s55

kic10
type: Parameter
is: SBO:0000261
constant: true
value: 0.01
name: kic10

kdc18cig dash
type: Parameter
is: SBO:0000356
constant: true
value: 0.0
name: kdc18cig'

Wee1T
type: Parameter
is: SBO:0000196
constant: true
value: 1.0
name: Wee1T

re54
type: Reaction
kinetic law: CDMT00187
product: CDMT00186
reactant: CDMT00185
reactant: CDMT00184
is: SBO:0000526
fast: false
reversible: true

CDMT00186
type: SpeciesReference
stoichiometry: 1.0
species: s161

CDMT00185
type: SpeciesReference
stoichiometry: 1.0
species: s166

CDMT00184
type: SpeciesReference
stoichiometry: 1.0
species: s56

kdrumcig dash
type: Parameter
is: SBO:0000356
constant: true
value: 10.0
name: kdrumcig_dash

kaie dash
type: Parameter
is: SBO:0000363
constant: true
value: 0.05
name: kaie'

oriT
type: Parameter
is: SBO:0000361
constant: true
value: 1.0
name: oriT

re21
type: Reaction
fast: false
kinetic law: CDMT00069
is: SBO:0000330
modifier: CDMT00066
reversible: false
modifier: CDMT00068
name: Cdc13_Dephosphorylation
product: CDMT00065
reactant: CDMT00064
modifier: CDMT00067

CDMT00065
type: SpeciesReference
stoichiometry: 1.0
species: s67

CDMT00064
type: SpeciesReference
stoichiometry: 1.0
species: s63

re67
type: Reaction
modifier: CDMT00218
kinetic law: CDMT00219
modifier: CDMT00216
reactant: CDMT00214
fast: false
is: SBO:0000204
product: CDMT00215
reversible: false
modifier: CDMT00217

CDMT00214
type: SpeciesReference
stoichiometry: 1.0
species: s91

CDMT00215
type: SpeciesReference
stoichiometry: 1.0
species: s92

re14
type: Reaction
is: SBO:0000180
name: Trim_Dissociation_Rum1degradation
reactant: CDMT00031
fast: false
product: CDMT00032
product: CDMT00033
modifier: CDMT00034
kinetic law: CDMT00035
reversible: false

CDMT00031
type: SpeciesReference
stoichiometry: 1.0
species: s137

CDMT00032
type: SpeciesReference
stoichiometry: 1.0
species: s60

CDMT00033
type: SpeciesReference
stoichiometry: 1.0
species: s61

Vamik
type: Parameter
is: SBO:0000363
constant: true
value: 0.25
name: Vamik

http://identifiers.org/biomodels.db/BIOMD0000000406#k
type: Parameter
is: SBO:0000009
constant: true
value: 0.1
name: k

ksc18 dash
type: Parameter
is: SBO:0000009
constant: true
value: 0.075
name: ksc18'

kwee dash2
type: Parameter
is: SBO:0000009
constant: true
value: 0.5
name: kwee''

W3 CDTF: Wed Jul 11 19:10:05 BST 2012