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created:
  W3 CDTF: Fri Sep 16 15:50:04 BST 2011
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modified:
  W3 CDTF: Fri Apr 20 20:50:00 BST 2012
name: MM s1 + reg 5*c (RuBisCO)
notes: This model is from the article: A quantitative comparison of Calvin–Benson cycle models Anne Arnold, Zoran Nikoloski Trends in Plant Science 2011 Oct 14. 22001849 , Abstract: The Calvin-Benson cycle (CBC) provides the precursors for biomass synthesis necessary for plant growth. The dynamic behavior and yield of the CBC depend on the environmental conditions and regulation of the cellular state. Accurate quantitative models hold the promise of identifying the key determinants of the tightly regulated CBC function and their effects on the responses in future climates. We provide an integrative analysis of the largest compendium of existing models for photosynthetic processes. Based on the proposed ranking, our framework facilitates the discovery of best-performing models with regard to metabolomics data and of candidates for metabolic engineering. Note: Model of the Calvin cycle and the related end-product pathway to starch synthesis by Poolman et al. (2000, DOI:10.1093/jexbot/51.suppl_1.319 ). The parameter values are widely taken from Pettersson and Ryde-Pettersson (1988,DOI:10.1111/j.1432-1033.1988.tb14242.x ) and Poolman (1999,[click here for PDF] ). The initial metabolite values are chosen from the data set of Zhu et al. (2007,DOI:10.1104/pp.107.103713 ). A detailed description of all modifications is given in the model described by Arnold and Nikoloski (2011,PMID:22001849 .
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kinetic law: 089956
product: 089931
product: 089944
reactant: 089894
reversible: true
fast: false
reactant: 089882
name: GAP dehydrogenase
reactant: 089906

089918
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000017

448365
type: LocalParameter
is: SBO:0000009
value: 31.25
name: k2

448364
type: LocalParameter
is: SBO:0000009
value: 5.0E8
name: k1

089931
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000032

089944
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000034

089894
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000031

089882
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000016

089906
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000033

metaid_0000033
type: Species
is version of: CHEBI:15378
constant: true
boundary condition: true
has only substance units: false
initial concentration: 1.25892541179417E-5
initial amount: NaN
in compartment: metaid_0000012
name: H

ORG:
  orgname: Max-Planck-Institute of Molecular Plant Physiology
n:
  given: Anne
  family: Arnold