BIOMD0000000365
type: SBMLModel
species: 14
species: 12
parameter: 68
reaction: 31
parameter: 65
parameter: 71
reaction: 52
is described by: http://identifiers.org/pubmed/10346914
species: 22
species: 5
species: 6
curated: true
reaction: 55
species: 1
reaction: 60
reaction: 34
reaction: 63
species: 18
parameter: 64
reaction: 37
reaction: 42
volume units: 498095
reaction: 48
reaction: 58
species: 28
species: 27
species: 13
species: 11
reaction: 45
species: 21
is: GO:0007596
reaction: 32
parameter: 66
parameter: 72
reaction: 35
parameter: 69
reaction: 40
reaction: 50
reaction: 56
species: 3
species: 4
species: 30
species: 17
reaction: 43
reaction: 53
reaction: 59
reaction: 61
reaction: 38
species: 16
occurs in: http://identifiers.org/taxonomy/2759
species: 10
parameter: 67
reaction: 46
species: 25
species: 23
species: 26
species: 24
species: 9
species: 7
species: 8
compartment: 73
reaction: 51
reaction: 49
species: 20
time units: 628102
substance units: 671381
reaction: 36
parameter: 70
reaction: 33
reaction: 39
reaction: 44
reaction: 54
species: 19
is: MODEL1108260001
species: 2
species: 29
species: 15
name: Hockin1999_BloodCoagulation_VaInactivation
area units: 498119

14
type: Species
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73
type: Compartment
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size: 1.0
spatial dimensions: 3.0
name: compartment_1

12
type: Species
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boundary condition: false
has only substance units: false
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68
type: Parameter
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constant: true
value: 5.2E-4
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31
type: Reaction
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product: 687160
reactant: 687147
reactant: 687135
fast: false
reversible: true
name: r1

687160
type: SpeciesReference
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stoichiometry: 1.0
species: 3

3
type: Species
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name: Va_APC
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constant: false

687147
type: SpeciesReference
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stoichiometry: 1.0
species: 1

1
type: Species
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constant: false
boundary condition: false
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initial concentration: 1.0E-8
initial amount: NaN
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name: APC

687135
type: SpeciesReference
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stoichiometry: 1.0
species: 2

2
type: Species
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boundary condition: false
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initial concentration: 2.0E-7
initial amount: NaN
in compartment: 73
name: Va

65
type: Parameter
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constant: true
value: 0.7
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71
type: Parameter
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constant: true
value: 1.72E-5
name: k9

52
type: Reaction
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product: 688066
product: 688054
reactant: 688042
fast: false
reversible: true
name: r22

688066
type: SpeciesReference
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stoichiometry: 1.0
species: 17

17
type: Species
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boundary condition: false
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initial concentration: 0.0
initial amount: NaN
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name: LC

688054
type: SpeciesReference
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stoichiometry: 1.0
species: 21

21
type: Species
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boundary condition: false
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initial concentration: 0.0
initial amount: NaN
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name: HC36

688042
type: SpeciesReference
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stoichiometry: 1.0
species: 12

22
type: Species
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initial concentration: 0.0
initial amount: NaN
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name: HC536

5
type: Species
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initial concentration: 0.0
initial amount: NaN
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name: Va3_APC

6
type: Species
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name: Va5

55
type: Reaction
kinetic law: 688223
product: 688211
product: 688199
reactant: 688187
fast: false
reversible: true
name: r25

688211
type: SpeciesReference
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stoichiometry: 1.0
species: 29

29
type: Species
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has only substance units: false
initial concentration: 0.0
initial amount: NaN
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name: VaLCA1

688199
type: SpeciesReference
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stoichiometry: 1.0
species: 25

25
type: Species
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initial concentration: 0.0
initial amount: NaN
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name: VaA3

688187
type: SpeciesReference
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stoichiometry: 1.0
species: 4

4
type: Species
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boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va3

60
type: Reaction
kinetic law: 688465
product: 688453
product: 688441
reactant: 688429
fast: false
reversible: true
name: r30

688453
type: SpeciesReference
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stoichiometry: 1.0
species: 30

30
type: Species
has part: P04070
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: VaLCA1_APC

688441
type: SpeciesReference
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stoichiometry: 1.0
species: 26

26
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: VaA53

688429
type: SpeciesReference
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stoichiometry: 1.0
species: 9

9
type: Species
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constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va53_APC

34
type: Reaction
kinetic law: 687318
product: 687305
reactant: 687293
reactant: 687281
fast: false
reversible: true
name: r4

687305
type: SpeciesReference
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stoichiometry: 1.0
species: 9

687293
type: SpeciesReference
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stoichiometry: 1.0
species: 1

687281
type: SpeciesReference
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stoichiometry: 1.0
species: 8

8
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va53

63
type: Reaction
kinetic law: 688609
product: 688597
reactant: 688585
reactant: 688573
fast: false
reversible: true
name: r33

688597
type: SpeciesReference
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stoichiometry: 1.0
species: 30

688585
type: SpeciesReference
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stoichiometry: 1.0
species: 1

688573
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 29

18
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: HC5

64
type: Parameter
is: SBO:0000036
constant: true
value: 1.0E8
name: k1

37
type: Reaction
kinetic law: 687463
product: 687451
reactant: 687439
reactant: 687427
fast: false
reversible: true
name: r7

687451
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 15

15
type: Species
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constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va536_APC

687439
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 1

687427
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 14

42
type: Reaction
kinetic law: 687644
product: 687632
reactant: 687620
fast: false
reversible: false
name: r12

687632
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 15

687620
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 9

48
type: Reaction
kinetic law: 687885
product: 687873
product: 687860
reactant: 687848
fast: false
reversible: true
name: r18

687873
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 17

687860
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 18

687848
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 6

58
type: Reaction
kinetic law: 688369
product: 688357
product: 688345
reactant: 688332
fast: false
reversible: true
name: r28

688357
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 29

688345
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 28

28
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: VaA536

688332
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 14

27
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: VaA36

13
type: Species
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constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va36_APC

11
type: Species
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constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va56_APC

45
type: Reaction
kinetic law: 687752
product: 687740
reactant: 687728
fast: false
reversible: false
name: r15

687740
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 15

687728
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 13

32
type: Reaction
kinetic law: 687221
product: 687208
reactant: 687196
reactant: 687184
fast: false
reversible: true
name: r2

687208
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 5

687196
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 1

687184
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 4

66
type: Parameter
is: SBO:0000035
constant: true
value: 0.064
name: k3

72
type: Parameter
is: SBO:0000039
constant: true
value: 2630.0
name: k10

35
type: Reaction
kinetic law: 687366
product: 687354
reactant: 687342
reactant: 687330
fast: false
reversible: true
name: r5

687354
type: SpeciesReference
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stoichiometry: 1.0
species: 11

687342
type: SpeciesReference
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stoichiometry: 1.0
species: 1

687330
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 10

10
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va56

69
type: Parameter
is: SBO:0000035
constant: true
value: 0.028
name: k7

40
type: Reaction
kinetic law: 687571
product: 687559
reactant: 687547
fast: false
reversible: false
name: r10

687559
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 15

687547
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 11

50
type: Reaction
kinetic law: 687982
product: 687969
product: 687957
reactant: 687945
fast: false
reversible: true
name: r20

687969
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 17

687957
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 20

20
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: HC56

687945
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 10

56
type: Reaction
kinetic law: 688272
product: 688260
product: 688248
reactant: 688235
fast: false
reversible: true
name: r26

688260
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 29

688248
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 26

688235
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 8

43
type: Reaction
kinetic law: 687680
product: 687668
reactant: 687656
fast: false
reversible: false
name: r13

687668
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 5

687656
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 3

53
type: Reaction
kinetic law: 688127
product: 688115
product: 688103
reactant: 688091
fast: false
reversible: true
name: r23

688115
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 17

688103
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 22

688091
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 14

59
type: Reaction
kinetic law: 688417
product: 688405
product: 688393
reactant: 688381
fast: false
reversible: true
name: r29

688405
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 30

688393
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 25

688381
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 5

61
type: Reaction
kinetic law: 688513
product: 688501
product: 688489
reactant: 688477
fast: false
reversible: true
name: r31

688501
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 30

688489
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 27

688477
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 13

38
type: Reaction
kinetic law: 687499
product: 687487
reactant: 687475
fast: false
reversible: false
name: r8

687487
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 7

7
type: Species
has part: P04070
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: Va5_APC

687475
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 3

16
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: HC

67
type: Parameter
is: SBO:0000035
constant: true
value: 1.0
name: k5

46
type: Reaction
kinetic law: 687788
product: 687776
reactant: 687764
fast: false
reversible: false
name: r16

687776
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 9

687764
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 5

23
type: Species
has part: P04070
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: LC_APC

24
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: HC53

51
type: Reaction
kinetic law: 688030
product: 688018
product: 688006
reactant: 687994
fast: false
reversible: true
name: r21

688018
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 17

688006
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 24

687994
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 8

49
type: Reaction
kinetic law: 687933
product: 687921
product: 687909
reactant: 687897
fast: false
reversible: true
name: r19

687921
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 17

687909
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 19

19
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: 73
name: HC3

687897
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 4

36
type: Reaction
kinetic law: 687415
product: 687403
reactant: 687391
reactant: 687379
fast: false
reversible: true
name: r6

687403
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 13

687391
type: SpeciesReference
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stoichiometry: 1.0
species: 1

687379
type: SpeciesReference
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stoichiometry: 1.0
species: 12

70
type: Parameter
is: SBO:0000039
constant: true
value: 2570.0
name: k8

33
type: Reaction
kinetic law: 687269
product: 687257
reactant: 687245
reactant: 687233
fast: false
reversible: true
name: r3

687257
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 7

687245
type: SpeciesReference
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stoichiometry: 1.0
species: 1

687233
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 6

39
type: Reaction
kinetic law: 687535
product: 687523
reactant: 687511
fast: false
reversible: false
name: r9

687523
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 11

687511
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 7

44
type: Reaction
kinetic law: 687716
product: 687704
reactant: 687692
fast: false
reversible: false
name: r14

687704
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 13

687692
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 5

54
type: Reaction
kinetic law: 688175
product: 688163
reactant: 688151
reactant: 688139
fast: false
reversible: true
name: r24

688163
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 23

688151
type: SpeciesReference
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stoichiometry: 1.0
species: 1

688139
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 17

41
type: Reaction
kinetic law: 687608
product: 687596
reactant: 687583
fast: false
reversible: false
name: r11

687596
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 9

687583
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 7

47
type: Reaction
kinetic law: 687836
product: 687824
product: 687812
reactant: 687800
fast: false
reversible: true
name: r17

687824
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 17

687812
type: SpeciesReference
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stoichiometry: 1.0
species: 16

687800
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 2

57
type: Reaction
kinetic law: 688320
product: 688308
product: 688296
reactant: 688284
fast: false
reversible: true
name: r27

688308
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 29

688296
type: SpeciesReference
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stoichiometry: 1.0
species: 27

688284
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 12

W3 CDTF: Fri Apr 20 21:02:12 BST 2012

62
type: Reaction
kinetic law: 688561
product: 688549
product: 688537
reactant: 688525
fast: false
reversible: true
name: r32

688549
type: SpeciesReference
is: SBO:0000011
stoichiometry: 1.0
species: 30

688537
type: SpeciesReference
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stoichiometry: 1.0
species: 28

688525
type: SpeciesReference
is: SBO:0000010
stoichiometry: 1.0
species: 15

ORG:
  orgname: EBI
n:
  given: Michael
  family: Schubert

W3 CDTF: Fri Aug 26 17:38:00 BST 2011