BIOMD0000000287
type: SBMLModel
reaction: 885142
parameter: 885216
species: 885085
parameter: 885217
parameter: 885207
species: 885073
parameter: 885213
parameter: 885198
parameter: 885208
occurs in: http://identifiers.org/taxonomy/9606
reaction: 885107
reaction: 885121
species: 885060
species: 885088
reaction: 885139
reaction: 885103
species: 885076
event: 885173
species: 885058
parameter: 885193
species: 885063
is version of: GO:0006974
species: 885079
parameter: 885187
species: 885090
parameter: 885178
reaction: 885100
species: 885066
parameter: 885223
reaction: 885101
reaction: 885143
reaction: 885134
is version of: GO:0090398
reaction: 885094
species: 885069
parameter: 885183
reaction: 885116
reaction: 885106
is part of: ko05200
reaction: 885124
reaction: 885125
parameter: 885205
parameter: 885201
parameter: 885196
parameter: 885186
parameter: 885202
reaction: 885110
curated: true
reaction: 885137
parameter: 885192
reaction: 885119
event: 885172
species: 885059
parameter: 885226
reaction: 885115
species: 885064
parameter: 885222
reaction: 885131
species: 885091
reaction: 885093
species: 885067
parameter: 885210
reaction: 885098
parameter: 885211
area units: metaid_0000005
parameter: 885199
event: 885174
reaction: 885113
reaction: 885140
compartment: 885056
reaction: 885146
reaction: 885130
species: 885081
parameter: 885204
parameter: 885195
reaction: 885128
reaction: 885129
reaction: 885097
length unit: 879216

885142
type: Reaction
product: 092204
reversible: false
is version of: GO:0052064
kinetic law: 092228
fast: false
reactant: 092192
is: SBO:0000393
product: 092216

092204
type: SpeciesReference
stoichiometry: 1.0
species: 885081

885081
type: Species
is version of: Q16539
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

885056
type: Compartment
is version of: GO:0005623
is: SBO:0000290
constant: true
size: 1.0
spatial dimensions: 3.0

092192
type: SpeciesReference
stoichiometry: 1.0
species: 885081

092216
type: SpeciesReference
stoichiometry: 1.0
species: 885087

885087
type: Species
is version of: CHEBI:26523
is: SBO:0000327
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

885216
type: Parameter
is: SBO:0000009
constant: true
value: 6.0E-8

885085
type: Species
is version of: CHEBI:16991
is: SBO:0000251
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

885217
type: Parameter
is: SBO:0000356
constant: true
value: 2.4E-5

885207
type: Parameter
is: SBO:0000009
constant: true
value: 6.0E-5

885073
type: Species
is version of: P38936
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

885213
type: Parameter
is: SBO:0000356
constant: true
value: 1.0E-4

885198
type: Parameter
is: SBO:0000009
constant: true
value: 0.5

885208
type: Parameter
is: SBO:0000009
constant: true
value: 4.0E-6

885107
type: Reaction
kinetic law: 091169
product: 091157
reactant: 091145
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091157
type: SpeciesReference
stoichiometry: 1.0
species: 885090

885090
type: Species
is: SBO:0000291
constant: true
boundary condition: true
has only substance units: true
initial concentration: NaN
initial amount: 1.0
in compartment: 885056

091145
type: SpeciesReference
stoichiometry: 1.0
species: 885075

885075
type: Species
is version of: P04637
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

885121
type: Reaction
fast: false
kinetic law: 091602
is: SBO:0000216
reversible: false
product: 091590
is version of: GO:0016310
product: 091578
reactant: 091566
reactant: 091554

091590
type: SpeciesReference
stoichiometry: 1.0
species: 885066

885066
type: Species
is version of: Q13315
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

091578
type: SpeciesReference
stoichiometry: 1.0
species: 885076

885076
type: Species
is version of: Q00987
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

091566
type: SpeciesReference
stoichiometry: 1.0
species: 885066

091554
type: SpeciesReference
stoichiometry: 1.0
species: 885058

885058
type: Species
is version of: Q00987
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 5.0
in compartment: 885056

885060
type: Species
is: SBO:0000296
has part: Q00987
constant: false
has part: P04637
has only substance units: true
in compartment: 885056
initial amount: 95.0
initial concentration: NaN
boundary condition: false

885088
type: Species
is version of: CHEBI:26523
is: SBO:0000327
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 10.0
in compartment: 885056

885139
type: Reaction
reactant: 092108
is version of: GO:0006464
reactant: 092096
product: 092132
reversible: false
is: SBO:0000176
product: 092120
kinetic law: 092144
fast: false

092108
type: SpeciesReference
stoichiometry: 1.0
species: 885082

885082
type: Species
is: SBO:0000245
boundary condition: false
has part: P24522
has part: O95257
has part: O75293
initial concentration: NaN
constant: false
has only substance units: true
in compartment: 885056
initial amount: 0.0

092096
type: SpeciesReference
stoichiometry: 1.0
species: 885079

885079
type: Species
is version of: Q16539
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 100.0
in compartment: 885056

092132
type: SpeciesReference
stoichiometry: 1.0
species: 885082

092120
type: SpeciesReference
stoichiometry: 1.0
species: 885081

885103
type: Reaction
kinetic law: 091047
product: 091035
reactant: 091023
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091035
type: SpeciesReference
stoichiometry: 1.0
species: 885090

091023
type: SpeciesReference
stoichiometry: 1.0
species: 885058

885173
type: Event
event assignment: 092409
trigger: 092397
use values from trigger time: true

885084
type: Species
is: SBO:0000405
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

092397
type: Trigger
persistant: true
initial value: true

885193
type: Parameter
is: SBO:0000356
constant: true
value: 4.0E-4

885063
type: Species
encodes: Q00987
is: SBO:0000278
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 10.0
in compartment: 885056

885187
type: Parameter
is: SBO:0000282
constant: true
value: 1.155E-6

885178
type: Parameter
is: SBO:0000009
constant: true
value: 4.95E-4

885100
type: Reaction
reactant: 090939
product: 090951
is: SBO:0000183
reversible: false
product: 090963
is version of: GO:0006351
fast: false
kinetic law: 090975

090939
type: SpeciesReference
stoichiometry: 1.0
species: 885075

090951
type: SpeciesReference
stoichiometry: 1.0
species: 885075

090963
type: SpeciesReference
stoichiometry: 1.0
species: 885063

885223
type: Parameter
is: SBO:0000356
constant: true
value: 1.9E-4

885101
type: Reaction
kinetic law: 091011
product: 090999
reactant: 090987
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

090999
type: SpeciesReference
stoichiometry: 1.0
species: 885090

090987
type: SpeciesReference
stoichiometry: 1.0
species: 885063

885143
type: Reaction
kinetic law: 092264
product: 092252
reactant: 092240
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

092252
type: SpeciesReference
stoichiometry: 1.0
species: 885090

092240
type: SpeciesReference
stoichiometry: 1.0
species: 885087

885134
type: Reaction
kinetic law: 091963
product: 091951
reactant: 091939
is version of: GO:0006412
is: SBO:0000184
fast: false
reversible: false

091951
type: SpeciesReference
stoichiometry: 1.0
species: 885069

885069
type: Species
is version of: P38936
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

091939
type: SpeciesReference
stoichiometry: 1.0
species: 885073

885094
type: Reaction
kinetic law: 090830
product: 090818
reactant: 090805
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

090818
type: SpeciesReference
stoichiometry: 1.0
species: 885090

090805
type: SpeciesReference
stoichiometry: 1.0
species: 885064

885064
type: Species
encodes: P04637
is: SBO:0000278
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 10.0
in compartment: 885056

885183
type: Parameter
is: SBO:0000356
constant: true
value: 8.25E-4

885116
type: Reaction
product: 091433
kinetic law: 091445
fast: false
is part of: GO:0006974
product: 091421
reactant: 091397
reversible: false
reactant: 091409
is: SBO:0000176

091433
type: SpeciesReference
stoichiometry: 1.0
species: 885066

091421
type: SpeciesReference
stoichiometry: 1.0
species: 885085

091397
type: SpeciesReference
stoichiometry: 1.0
species: 885085

091409
type: SpeciesReference
stoichiometry: 1.0
species: 885067

885067
type: Species
is version of: Q13315
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 200.0
in compartment: 885056

885106
type: Reaction
kinetic law: 091133
product: 091120
reactant: 091108
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091120
type: SpeciesReference
stoichiometry: 1.0
species: 885058

091108
type: SpeciesReference
stoichiometry: 1.0
species: 885060

885124
type: Reaction
kinetic law: 091674
product: 091662
reactant: 091650
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091662
type: SpeciesReference
stoichiometry: 1.0
species: 885090

091650
type: SpeciesReference
stoichiometry: 1.0
species: 885076

885125
type: Reaction
kinetic law: 091710
product: 091698
reactant: 091686
is version of: GO:0006464
is: SBO:0000176
fast: false
reversible: false

091698
type: SpeciesReference
stoichiometry: 1.0
species: 885067

091686
type: SpeciesReference
stoichiometry: 1.0
species: 885066

885205
type: Parameter
is: SBO:0000009
constant: true
value: 0.007

885201
type: Parameter
is: SBO:0000009
constant: true
value: 0.5

885196
type: Parameter
is: SBO:0000009
constant: true
value: 0.006

885186
type: Parameter
is: SBO:0000337
constant: true
value: 0.001155

885202
type: Parameter
is: SBO:0000009
constant: true
value: 0.008

885110
type: Reaction
reversible: false
reactant: 091217
is version of: GO:0006461
kinetic law: 091253
reactant: 091229
fast: false
is: SBO:0000526
product: 091241

091217
type: SpeciesReference
stoichiometry: 1.0
species: 885059

885059
type: Species
is version of: P04637
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 5.0
in compartment: 885056

091229
type: SpeciesReference
stoichiometry: 1.0
species: 885058

091241
type: SpeciesReference
stoichiometry: 1.0
species: 885060

885137
type: Reaction
kinetic law: 092084
product: 092071
reactant: 092059
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

092071
type: SpeciesReference
stoichiometry: 1.0
species: 885090

092059
type: SpeciesReference
stoichiometry: 1.0
species: 885082

885192
type: Parameter
is: SBO:0000363
constant: true
value: 2.0E-5

885119
type: Reaction
kinetic law: 091542
product: 091530
reactant: 091518
is version of: GO:0016310
is: SBO:0000216
fast: false
reversible: false

091530
type: SpeciesReference
stoichiometry: 1.0
species: 885059

091518
type: SpeciesReference
stoichiometry: 1.0
species: 885075

885172
type: Event
event assignment: 092385
trigger: 092373
use values from trigger time: true

092373
type: Trigger
persistant: true
initial value: true

885226
type: Parameter
is: SBO:0000009
constant: true
value: 4.5E-4

885115
type: Reaction
kinetic law: 091385
product: 091373
reactant: 091361
is version of: GO:0006281
is: SBO:0000179
fast: false
reversible: false

091373
type: SpeciesReference
stoichiometry: 1.0
species: 885090

091361
type: SpeciesReference
stoichiometry: 1.0
species: 885085

885222
type: Parameter
is: SBO:0000009
constant: true
value: 4.0E-5

885131
type: Reaction
kinetic law: 091927
product: 091915
reactant: 091903
is version of: GO:0006412
is: SBO:0000184
fast: false
reversible: false

091915
type: SpeciesReference
stoichiometry: 1.0
species: 885073

091903
type: SpeciesReference
stoichiometry: 1.0
species: 885072

885072
type: Species
is version of: P38936
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 0.0
in compartment: 885056

885091
type: Species
is: SBO:0000291
constant: true
boundary condition: true
has only substance units: true
initial concentration: NaN
initial amount: 1.0
in compartment: 885056

885093
type: Reaction
kinetic law: 090793
product: 090781
reactant: 090769
is part of: GO:0006351
is: SBO:0000183
fast: false
reversible: false

090781
type: SpeciesReference
stoichiometry: 1.0
species: 885064

090769
type: SpeciesReference
stoichiometry: 1.0
species: 885091

885210
type: Parameter
is: SBO:0000356
constant: true
value: 1.0E-5

885098
type: Reaction
is: SBO:0000183
is version of: GO:0006351
reactant: 090891
kinetic law: 090927
fast: false
product: 090915
reversible: false
product: 090903

090891
type: SpeciesReference
stoichiometry: 1.0
species: 885059

090915
type: SpeciesReference
stoichiometry: 1.0
species: 885063

090903
type: SpeciesReference
stoichiometry: 1.0
species: 885059

885211
type: Parameter
is: SBO:0000009
constant: true
value: 0.001

885199
type: Parameter
constant: true
value: 2.0

885174
type: Event
event assignment: 092433
trigger: 092421
use values from trigger time: true

885231
type: Parameter
is: SBO:0000009
constant: false
value: 1.0

092421
type: Trigger
persistant: true
initial value: true

885113
type: Reaction
fast: false
is: SBO:0000375
is version of: GO:0006950
product: 091337
product: 091325
reactant: 091313
kinetic law: 091349
reversible: false

091337
type: SpeciesReference
stoichiometry: 1.0
species: 885085

091325
type: SpeciesReference
stoichiometry: 1.0
species: 885084

091313
type: SpeciesReference
stoichiometry: 1.0
species: 885084

885140
type: Reaction
kinetic law: 092180
product: 092168
reactant: 092156
is version of: GO:0006464
is: SBO:0000176
fast: false
reversible: false

092168
type: SpeciesReference
stoichiometry: 1.0
species: 885079

092156
type: SpeciesReference
stoichiometry: 1.0
species: 885081

885146
type: Reaction
is: SBO:0000176
kinetic law: 092361
fast: false
reversible: false
product: 092337
is version of: GO:0034614
product: 092349
reactant: 092325

092337
type: SpeciesReference
stoichiometry: 1.0
species: 885088

092349
type: SpeciesReference
stoichiometry: 1.0
species: 885085

092325
type: SpeciesReference
stoichiometry: 1.0
species: 885088

885130
type: Reaction
kinetic law: 091891
reactant: 091854
product: 091879
reversible: false
is: SBO:0000184
product: 091866
is version of: GO:0006412
fast: false

091854
type: SpeciesReference
stoichiometry: 1.0
species: 885070

885070
type: Species
encodes: P38936
is: SBO:0000278
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 1.0
in compartment: 885056

091879
type: SpeciesReference
stoichiometry: 1.0
species: 885072

091866
type: SpeciesReference
stoichiometry: 1.0
species: 885070

885204
type: Parameter
is: SBO:0000009
constant: true
value: 0.1

885195
type: Parameter
is: SBO:0000349
constant: true
value: 5.0E-4

885128
type: Reaction
fast: false
reactant: 091770
is: SBO:0000183
is version of: GO:0006351
reversible: false
product: 091794
product: 091782
kinetic law: 091806

091770
type: SpeciesReference
stoichiometry: 1.0
species: 885075

091794
type: SpeciesReference
stoichiometry: 1.0
species: 885070

091782
type: SpeciesReference
stoichiometry: 1.0
species: 885075

885129
type: Reaction
kinetic law: 091842
product: 091830
reactant: 091818
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091830
type: SpeciesReference
stoichiometry: 1.0
species: 885090

091818
type: SpeciesReference
stoichiometry: 1.0
species: 885070

885097
type: Reaction
reactant: 090842
kinetic law: 090879
is: SBO:0000184
product: 090867
reversible: false
fast: false
product: 090854
is version of: GO:0006412

090842
type: SpeciesReference
stoichiometry: 1.0
species: 885063

090867
type: SpeciesReference
stoichiometry: 1.0
species: 885058

090854
type: SpeciesReference
stoichiometry: 1.0
species: 885063

885229
type: Parameter
is: SBO:0000009
constant: true
value: 1.0E-9

885225
type: Parameter
is: SBO:0000356
constant: true
value: 3.83E-4

885136
type: Reaction
is: SBO:0000176
product: 092023
fast: false
kinetic law: 092047
reversible: false
reactant: 092011
product: 092035
is version of: GO:0006412

092023
type: SpeciesReference
stoichiometry: 1.0
species: 885069

092011
type: SpeciesReference
stoichiometry: 1.0
species: 885069

092035
type: SpeciesReference
stoichiometry: 1.0
species: 885082

885135
type: Reaction
kinetic law: 091999
product: 091987
reactant: 091975
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091987
type: SpeciesReference
stoichiometry: 1.0
species: 885090

091975
type: SpeciesReference
stoichiometry: 1.0
species: 885069

885190
type: Parameter
is: SBO:0000282
constant: true
value: 1.0E-4

885180
type: Parameter
is: SBO:0000356
constant: true
value: 4.33E-4

885219
type: Parameter
is: SBO:0000009
constant: true
value: 4.0E-4

885181
type: Parameter
is: SBO:0000009
constant: true
value: 0.006

885214
type: Parameter
constant: true
value: 6.0E-6

885122
type: Reaction
kinetic law: 091638
product: 091626
reactant: 091614
is version of: GO:0016311
is: SBO:0000330
fast: false
reversible: false

091626
type: SpeciesReference
stoichiometry: 1.0
species: 885058

091614
type: SpeciesReference
stoichiometry: 1.0
species: 885076

885109
type: Reaction
kinetic law: 091205
product: 091193
reactant: 091181
is version of: GO:0009056
is: SBO:0000179
fast: false
reversible: false

091193
type: SpeciesReference
stoichiometry: 1.0
species: 885090

091181
type: SpeciesReference
stoichiometry: 1.0
species: 885059

885104
type: Reaction
is: SBO:0000184
fast: false
is version of: GO:0006412
kinetic law: 091096
product: 091084
product: 091072
reactant: 091060
reversible: false

091084
type: SpeciesReference
stoichiometry: 1.0
species: 885064

091072
type: SpeciesReference
stoichiometry: 1.0
species: 885059

091060
type: SpeciesReference
stoichiometry: 1.0
species: 885064

885220
type: Parameter
is: SBO:0000009
constant: true
value: 4.0E-5

885078
type: Species
is version of: P38936
is: SBO:0000245
constant: false
boundary condition: false
has only substance units: true
initial concentration: NaN
initial amount: 7.0
in compartment: 885056

W3 CDTF: Fri Mar 09 15:50:10 GMT 2012

090757
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: ITEM

885189
type: Parameter
is: SBO:0000009
constant: true
value: 1.0E-4

885112
type: Reaction
is version of: GO:0043241
product: 091277
reversible: false
reactant: 091265
fast: false
is: SBO:0000180
product: 091289
kinetic law: 091301

091277
type: SpeciesReference
stoichiometry: 1.0
species: 885059

091265
type: SpeciesReference
stoichiometry: 1.0
species: 885060

091289
type: SpeciesReference
stoichiometry: 1.0
species: 885058

885145
type: Reaction
reactant: 092276
kinetic law: 092312
product: 092288
reversible: false
is version of: GO:0034614
is: SBO:0000176
product: 092300
fast: false

092276
type: SpeciesReference
stoichiometry: 1.0
species: 885087

092288
type: SpeciesReference
stoichiometry: 1.0
species: 885087

092300
type: SpeciesReference
stoichiometry: 1.0
species: 885085

885184
type: Parameter
is: SBO:0000282
constant: true
value: 8.25E-7

885118
type: Reaction
kinetic law: 091506
fast: false
is: SBO:0000216
product: 091494
is version of: GO:0016310
reactant: 091457
reactant: 091469
reversible: false
product: 091482

091494
type: SpeciesReference
stoichiometry: 1.0
species: 885066

091457
type: SpeciesReference
stoichiometry: 1.0
species: 885059

091469
type: SpeciesReference
stoichiometry: 1.0
species: 885066

091482
type: SpeciesReference
stoichiometry: 1.0
species: 885075

885228
type: Parameter
is: SBO:0000009
constant: true
value: 1.0E-5

885126
type: Reaction
product: 091746
reactant: 091722
is: SBO:0000183
is version of: GO:0006351
fast: false
reversible: false
product: 091734
kinetic law: 091758

091746
type: SpeciesReference
stoichiometry: 1.0
species: 885070

091722
type: SpeciesReference
stoichiometry: 1.0
species: 885059

091734
type: SpeciesReference
stoichiometry: 1.0
species: 885059

ORG:
  orgname: Centre for Integrated Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Newcastle University, UK
n:
  given: Carole J
  family: Proctor

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

W3 CDTF: Mon Mar 01 12:01:28 GMT 2010