BIOMD0000000269
type: SBMLModel
occurs in: http://identifiers.org/taxonomy/3702
is: MODEL1008260000
parameter: k2c meta
units def: 747960
parameter: k9 meta
reaction: reaction 7 meta
species: PLSp meta
function def: 695449
function def: 695453
parameter: k10a meta
parameter: k auxin meta
function def: 695445
species: CTR1 star meta
parameter: k17 meta
species: ReT meta
species: CK meta
curated: true
compartment: extra meta
species: Auxin meta
parameter: k7 meta
reaction: reaction 3 meta
is described by: http://identifiers.org/pubmed/20531403
parameter: k ethylene meta
name: Rate law for v6: Transcription of POLARIS gene
parameter: k13 meta
species: Ra star meta
parameter: k4 meta
volume units: metaid_0000020
time units: 747996
units def: 747936
function def: 695438
function def: 695437
reaction: reaction 11 meta
species: RaT meta
reaction: reaction 5 meta
name: Rate law for v13: Removal of ethylene
species: PLSm meta
name: Rate law for v2: Auxin biosynthesis in the cell
reaction: v Ethylene meta
compartment: compartment 1 meta
parameter: k11 meta
species: CTR1 meta
reaction: v Auxin meta
species: IAA meta
parameter: k19 meta
reaction: reaction 14 meta
parameter: k5 meta
parameter: k8 meta
parameter: k16 meta
name: Rate law for v14: Conversion of the inactivated form of CTR1 protein to its activated form by Re*
is version of: GO:0009734
parameter: k14 meta
function def: 695446
name: Rate law for v19: removal of cytokinin
function def: 695455
reaction: reaction 19 meta
parameter: k1 meta
reaction: reaction 12 meta
reaction: reaction 1 meta
parameter: k18a meta
units def: 748046
reaction: reaction 2 meta
name: Rate law for v18: Biosynthesis of cytokinin
function def: 695441
parameter: k16a meta
parameter: k cytokinin meta
function def: 695450
name: Rate law for v3: Auxin removal from the cell
reaction: reaction 8 meta
reaction: reaction 17 meta
reaction: reaction 6 meta
substance units: 747936
units def: 748021
name: Rate law for v15: Conversion of the activated form of CTR1 protein to its inactivated form
reaction: reaction 16 meta
is version of: GO:0009873
species: Re star meta
species: ET meta
name: Liu2010_Hormonal_Crosstalk_Arabidopsis

k2c meta
type: Parameter
is: SBO:0000027
constant: true
units: 747960
value: 0.01
name: k2c

747960
type: SBMLUnitsDef
unit: 747984
unit: 747972
name: uM

747984
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

747972
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

k9 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k9

748021
type: SBMLUnitsDef
unit: 748034
name: per_sec

748034
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

reaction 7 meta
type: Reaction
kinetic law: 748422
reactant: 748410
is version of: GO:0006402
is: SBO:0000179
fast: false
reversible: false
name: v7: Decay of mRNA of POLARIS gene

748410
type: SpeciesReference
stoichiometry: 1.0
species: PLSm meta

PLSm meta
type: Species
is encoded by: http://identifiers.org/ncbigene/3770598
name: PLSm
boundary condition: false
in compartment: compartment 1 meta
has only substance units: false
constant: false
initial concentration: 0.1
initial amount: NaN
is: SBO:0000278

compartment 1 meta
type: Compartment
is version of: GO:0005623
is: SBO:0000290
constant: true
size: 1.0
spatial dimensions: 3.0
name: cell

PLSp meta
type: Species
name: PLSp
initial concentration: 0.1
boundary condition: false
is: SBO:0000252
is version of: Q8LLV8
is encoded by: http://identifiers.org/ncbigene/3770598
has only substance units: false
initial amount: NaN
constant: false
in compartment: compartment 1 meta

k10a meta
type: Parameter
is: SBO:0000036
constant: true
units: 748046
value: 0.5
name: k10a

748046
type: SBMLUnitsDef
unit: 748082
unit: 748070
unit: 748058
name: per_uM_per_sec

748082
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

748070
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: LITRE

748058
type: SBMLUnit
exponent: -1.0
scale: -6
multipler: 1.0
kind: MOLE

k auxin meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 70.0
name: k_auxin

CTR1 star meta
type: Species
boundary condition: false
constant: false
initial concentration: 0.3
is version of: Q05609
is: SBO:0000252
initial amount: NaN
in compartment: compartment 1 meta
has only substance units: false
name: CTR1*

k17 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 0.1
name: k17

ReT meta
type: Species
is version of: P49333
initial concentration: 0.3
name: Re_total
in compartment: compartment 1 meta
has only substance units: false
initial amount: NaN
constant: false
is: SBO:0000252
boundary condition: true

CK meta
type: Species
is version of: CHEBI:23530
name: CK
initial concentration: 0.1
in compartment: compartment 1 meta
is: SBO:0000247
boundary condition: false
initial amount: NaN
constant: false
has only substance units: false

extra meta
type: Compartment
is version of: GO:0005615
constant: true
size: 1.0
spatial dimensions: 3.0
name: extracellular

Auxin meta
type: Species
has only substance units: false
constant: false
boundary condition: false
in compartment: compartment 1 meta
initial concentration: 0.1
is version of: CHEBI:22676
initial amount: NaN
name: Auxin
is: SBO:0000247

k7 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k7

reaction 3 meta
type: Reaction
kinetic law: 748264
modifier: 748252
reactant: 748239
is version of: GO:0009852
is: SBO:0000179
fast: false
reversible: false
name: v3: Auxin removal from the cell

X meta
type: Species
is: SBO:0000240
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.1
initial amount: NaN
in compartment: compartment 1 meta
name: X

748239
type: SpeciesReference
stoichiometry: 1.0
species: Auxin meta

k ethylene meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 0.5
name: k_ethylene

k13 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k13

Ra star meta
type: Species
name: Ra*
is: SBO:0000297
in compartment: compartment 1 meta
constant: false
initial amount: NaN
has property: GO:0010011
initial concentration: 1.0
has only substance units: false
boundary condition: false

k4 meta
type: Parameter
is: SBO:0000036
constant: true
units: 748046
value: 1.0
name: k4

747996
type: SBMLUnitsDef
unit: 748009
name: sec

748009
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 1.0
kind: SECOND

747936
type: SBMLUnitsDef
unit: 747948
name: umole

747948
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

reaction 11 meta
type: Reaction
kinetic law: 748578
modifier: 748566
product: 748554
reactant: 748542
is: SBO:0000176
fast: false
reversible: false
name: v11: Conversion of the activated form of ethylene receptor to its inactivated form

ET meta
type: Species
name: ET
initial concentration: 0.1
constant: false
is: CHEBI:18153
in compartment: compartment 1 meta
has only substance units: false
initial amount: NaN
is: SBO:0000247
is: C06547
boundary condition: false

748554
type: SpeciesReference
stoichiometry: 1.0
species: Re meta

Re meta
type: Species
initial amount: NaN
initial concentration: 0.0
has only substance units: false
is: SBO:0000252
is version of: P49333
constant: false
boundary condition: true
is version of: Q0WPQ2
in compartment: compartment 1 meta
name: Re

748542
type: SpeciesReference
stoichiometry: 1.0
species: Re star meta

Re star meta
type: Species
has only substance units: false
initial amount: NaN
initial concentration: 0.3
in compartment: compartment 1 meta
is version of: P49333
name: Re*
constant: false
boundary condition: false
is: SBO:0000252

RaT meta
type: Species
in compartment: compartment 1 meta
has only substance units: false
name: Ra_total
has property: GO:0010011
is: SBO:0000297
initial amount: NaN
initial concentration: 1.0
constant: false
boundary condition: true

reaction 5 meta
type: Reaction
kinetic law: 748349
product: 748337
reactant: 748324
is version of: GO:0010930
is: SBO:0000176
fast: false
reversible: false
name: v5: Conversion of auxin receptor from the activated form to the inactivated form

748337
type: SpeciesReference
stoichiometry: 1.0
species: Ra meta

Ra meta
type: Species
has only substance units: false
initial amount: NaN
in compartment: compartment 1 meta
constant: false
name: Ra
has property: GO:0010011
is: SBO:0000297
initial concentration: 0.0
boundary condition: true

748324
type: SpeciesReference
stoichiometry: 1.0
species: Ra star meta

v Ethylene meta
type: Reaction
kinetic law: 748891
product: 748879
reactant: 748867
is: SBO:0000185
fast: false
reversible: false
name: vEthylene: Uptake rate of exogenous ACC (1-aminocyclopropane-1-carboxylic acid)

748879
type: SpeciesReference
stoichiometry: 1.0
species: ET meta

748867
type: SpeciesReference
stoichiometry: 1.0
species: ACC meta

ACC meta
type: Species
initial concentration: 0.0
is: CHEBI:18053
is: SBO:0000247
constant: false
name: ACC
in compartment: extra meta
initial amount: NaN
has only substance units: false
boundary condition: true

k11 meta
type: Parameter
is: SBO:0000036
constant: true
units: 748046
value: 5.0
name: k11

CTR1 meta
type: Species
is: SBO:0000252
initial concentration: 0.0
name: CTR1
constant: false
initial amount: NaN
has only substance units: false
is version of: Q05609
in compartment: compartment 1 meta
boundary condition: true

v Auxin meta
type: Reaction
kinetic law: 748927
product: 748915
reactant: 748903
is version of: GO:0060919
is: SBO:0000185
fast: false
reversible: false
name: vAuxin: Uptake rate of exogenous auxin (indole-3-acetic acid, IAA)

748915
type: SpeciesReference
stoichiometry: 1.0
species: Auxin meta

748903
type: SpeciesReference
stoichiometry: 1.0
species: IAA meta

IAA meta
type: Species
is: C00954
name: IAA
is: SBO:0000247
has only substance units: false
constant: false
initial amount: NaN
is: CHEBI:16411
in compartment: extra meta
boundary condition: true
initial concentration: 0.0

k19 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k19

reaction 14 meta
type: Reaction
kinetic law: 748698
modifier: 748686
product: 748674
reactant: 748662
is: SBO:0000176
fast: false
reversible: false
name: v14: Conversion of the inactivated form of CTR1 protein to its activated form by Re*

748674
type: SpeciesReference
stoichiometry: 1.0
species: CTR1 star meta

748662
type: SpeciesReference
stoichiometry: 1.0
species: CTR1 meta

k5 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k5

k8 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 1.0
name: k8

k16 meta
type: Parameter
is: SBO:0000324
constant: true
units: 748094
value: 0.3
name: k16

748094
type: SBMLUnitsDef
unit: 748130
unit: 748118
unit: 748106
name: per_uM_per_sec

748130
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: SECOND

748118
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

748106
type: SBMLUnit
exponent: 1.0
scale: -6
multipler: 1.0
kind: MOLE

k14 meta
type: Parameter
is: SBO:0000036
constant: true
units: 748046
value: 3.0
name: k14

reaction 19 meta
type: Reaction
kinetic law: 748855
reactant: 748843
is version of: GO:0009823
is: SBO:0000179
fast: false
reversible: false
name: v19: removal of cytokinin

748843
type: SpeciesReference
stoichiometry: 1.0
species: CK meta

k1 meta
type: Parameter
is: SBO:0000288
constant: true
units: 747960
value: 1.0
name: k1

reaction 12 meta
type: Reaction
modifier: 748614
is: SBO:0000393
is version of: GO:0009693
reversible: false
modifier: 748602
name: v12: Ethylene biosynthesis
product: 748590
kinetic law: 748626
fast: false

748590
type: SpeciesReference
stoichiometry: 1.0
species: ET meta

reaction 1 meta
type: Reaction
kinetic law: 748167
modifier: 748155
product: 748142
is version of: GO:0060918
is: SBO:0000185
fast: false
reversible: false
name: v1: Auxin Transport to the cell

748142
type: SpeciesReference
stoichiometry: 1.0
species: Auxin meta

k18a meta
type: Parameter
is: SBO:0000324
constant: true
units: 748094
value: 1.0
name: k18a

reaction 2 meta
type: Reaction
fast: false
modifier: 748215
is version of: GO:0009851
reversible: false
is: SBO:0000393
modifier: 748191
name: v2: Auxin biosynthesis in the cell
kinetic law: 748227
product: 748179
modifier: 748203

748179
type: SpeciesReference
stoichiometry: 1.0
species: Auxin meta

k16a meta
type: Parameter
is: SBO:0000038
constant: true
units: 748021
value: 1.0
name: k16a

k cytokinin meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 10.0
name: k_cytokinin

reaction 8 meta
type: Reaction
kinetic law: 748458
modifier: 748446
product: 748434
is: GO:0006412
is: SBO:0000184
fast: false
reversible: false
name: v8: Translation of POLARIS gene

748434
type: SpeciesReference
stoichiometry: 1.0
species: PLSp meta

reaction 17 meta
type: Reaction
kinetic law: 748794
reactant: 748782
is version of: GO:0030163
is: SBO:0000179
fast: false
reversible: false
name: v17: Removal of the unknown molecule X

748782
type: SpeciesReference
stoichiometry: 1.0
species: X meta

reaction 6 meta
type: Reaction
is version of: GO:0009299
modifier: 748373
is: SBO:0000183
modifier: 748385
reversible: false
fast: false
name: v6: Transcription of POLARIS gene
kinetic law: 748397
product: 748361

748361
type: SpeciesReference
stoichiometry: 1.0
species: PLSm meta

reaction 16 meta
type: Reaction
kinetic law: 748770
modifier: 748758
product: 748746
is: SBO:0000176
fast: false
reversible: false
name: v16: Activation of the downstream of ethylene signalling response is inhibited by CTR1*

748746
type: SpeciesReference
stoichiometry: 1.0
species: X meta

k6a meta
type: Parameter
is: SBO:0000288
constant: true
units: 747960
value: 0.2
name: k6a

reaction 10 meta
type: Reaction
kinetic law: 748530
modifier: 748518
product: 748506
reactant: 748494
is: SBO:0000176
fast: false
reversible: false
name: v10: Conversion of the inactivated form of ethylene receptor to its activated form by PLSp

748506
type: SpeciesReference
stoichiometry: 1.0
species: Re star meta

748494
type: SpeciesReference
stoichiometry: 1.0
species: Re meta

reaction 9 meta
type: Reaction
kinetic law: 748482
reactant: 748470
is version of: GO:0030163
is: SBO:0000179
fast: false
reversible: false
name: v9: Decay of protein of POLARIS gene

748470
type: SpeciesReference
stoichiometry: 1.0
species: PLSp meta

reaction 15 meta
type: Reaction
kinetic law: 748734
product: 748722
reactant: 748710
is: SBO:0000176
fast: false
reversible: false
name: v15: Conversion of the activated form of CTR1 protein to its inactivated form

748722
type: SpeciesReference
stoichiometry: 1.0
species: CTR1 meta

748710
type: SpeciesReference
stoichiometry: 1.0
species: CTR1 star meta

k12a meta
type: Parameter
is: SBO:0000036
constant: true
units: 748046
value: 0.1
name: k12a

k3a meta
type: Parameter
is: SBO:0000036
constant: true
units: 748046
value: 0.45
name: k3a

k18 meta
type: Parameter
is: SBO:0000288
constant: true
units: 747960
value: 0.1
name: k18

reaction 18 meta
type: Reaction
kinetic law: 748830
modifier: 748818
product: 748806
is version of: GO:0009691
is: SBO:0000393
fast: false
reversible: false
name: v18: Biosynthesis of cytokinin

748806
type: SpeciesReference
stoichiometry: 1.0
species: CK meta

v Cytokinin meta
type: Reaction
kinetic law: 748964
product: 748951
reactant: 748939
is version of: GO:0010184
is: SBO:0000185
fast: false
reversible: false
name: vCytokinin: Uptake rate of exogenous cytokinin

748951
type: SpeciesReference
stoichiometry: 1.0
species: CK meta

748939
type: SpeciesReference
stoichiometry: 1.0
species: CK ex meta

CK ex meta
type: Species
initial amount: NaN
name: Cytokinin_ext
has only substance units: false
is version of: CHEBI:23530
initial concentration: 0.0
boundary condition: true
is: SBO:0000247
constant: false
in compartment: extra meta

k2b meta
type: Parameter
is: SBO:0000288
constant: true
units: 747960
value: 1.0
name: k2b

k2a meta
type: Parameter
is: SBO:0000046
constant: true
units: 748021
value: 2.8
name: k2a

k10 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 3.0E-4
name: k10

CTR1T meta
type: Species
boundary condition: true
constant: false
initial concentration: 0.3
has only substance units: false
name: CTR1_total
is version of: Q05609
in compartment: compartment 1 meta
is: SBO:0000252
initial amount: NaN

k6 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 0.3
name: k6

k1a meta
type: Parameter
is: SBO:0000186
constant: true
units: 748094
value: 1.0
name: k1a

k12 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748094
value: 0.1
name: k12

reaction 13 meta
type: Reaction
kinetic law: 748650
reactant: 748638
is version of: GO:0042457
is: SBO:0000179
fast: false
reversible: false
name: v13: Removal of ethylene

748638
type: SpeciesReference
stoichiometry: 1.0
species: ET meta

reaction 4 meta
type: Reaction
product: 748288
is version of: GO:0010929
kinetic law: 748312
name: v4: Conversion of auxin receptor from the inactivated form to the activated form
fast: false
is: SBO:0000176
reactant: 748276
modifier: 748300
reversible: false

748288
type: SpeciesReference
stoichiometry: 1.0
species: Ra star meta

748276
type: SpeciesReference
stoichiometry: 1.0
species: Ra meta

k2 meta
type: Parameter
is: SBO:0000485
constant: true
units: 748094
value: 0.2
name: k2

k3 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 2.0
name: k3

k15 meta
type: Parameter
is: SBO:0000035
constant: true
units: 748021
value: 0.085
name: k15

W3 CDTF: Wed Feb 08 19:28:43 GMT 2012

ORG:
  orgname: The Integrative Cell Biology Laboratory and The Biophysical Sciences Institute, School of Biological and Biomedical Sciences, Durham University, Durham, UK
n:
  given: Junli
  family: Liu

W3 CDTF: Mon Sep 20 18:04:58 BST 2010

ORG:
  orgname: EMBL-EBI
n:
  given: Lukas
  family: Endler