BIOMD0000000239
type: SBMLModel
compartment: metaid MATRIX
reaction: metaid v29
reaction: 244769
reaction: metaid v37
species: metaid Cit cyt
reaction: metaid v17
compartment: metaid CYTOPLASM
species: metaid Mal cyt
species: metaid OXA cyt
reaction: metaid v10
reaction: metaid v1
reaction: 244770
parameter: 245647
species: metaid Glu cyt
species: metaid IsoCit
reaction: 244927
compartment: metaid MT IM
reaction: metaid v4
reaction: metaid v7
species: metaid Glu
species: metaid NAD
species: metaid FBP
species: metaid FAD
reaction: metaid v25
species: metaid G3P
species: metaid NADP cyt
reaction: metaid v28
species: metaid Pyr
reaction: metaid v36
reaction: metaid v16
species: metaid CO2
species: metaid IsoCitcyt
species: metaid DHAP
species: metaid OXA
reaction: 244935
species: metaid Q
species: metaid Ala
compartment: metaid MT IMS
species: metaid NAD p
species: metaid ADP cyt
species: metaid ETFox
substance units: metaid_0000028
species: metaid OG cyt
species: metaid ADP
species: metaid NADPH
species: metaid CoA cyt
is version of: GO:0061178
reaction: 244903
species: metaid Acetyl CoA
species: metaid ATP
species: metaid Suc
reaction: metaid v41
species: metaid H2O
reaction: metaid v21
volume units: metaid_0000004
reaction: metaid v39
species: metaid Cit
species: metaid Acetyl CoA cyt
occurs in: http://identifiers.org/taxonomy/9606
reaction: metaid v6
reaction: metaid v44
species: metaid GAP
reaction: metaid v24
species: metaid OG
species: metaid ETFred
species: metaid LAC
species: metaid CoA
reaction: metaid v32
reaction: metaid v12
length unit: length
reaction: metaid v3
species: metaid Asp
species: metaid NADPH cyt
species: metaid SCoA
reaction: 244804
reaction: metaid v9
curated: true
reaction: metaid v27
time units: metaid_0000029

metaid MATRIX
type: Compartment
is: GO:0005759
constant: true
size: 1.0
spatial dimensions: 3.0
name: mitochondrial matrix

metaid v29
type: Reaction
kinetic law: metaid kineticLaw v29
product: 549490
reactant: 549478
is: http://identifiers.org/ec-code/4.2.1.3
fast: false
reversible: true
name: aconitase

245330
type: LocalParameter
value: 3.8617E-7
name: ACO

245327
type: LocalParameter
value: 31.44

245324
type: LocalParameter
value: 20.47

245321
type: LocalParameter
value: 1.1E-4

245319
type: LocalParameter
value: 5.0E-4

549490
type: SpeciesReference
stoichiometry: 1.0
species: metaid IsoCitcyt

metaid IsoCitcyt
type: Species
is: C00311
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.2E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: isocitrate

metaid CYTOPLASM
type: Compartment
is: GO:0005737
constant: true
size: 1.0
spatial dimensions: 3.0
name: cytoplasm

549478
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cit cyt

metaid Cit cyt
type: Species
is: C00158
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.2E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: citrate

244769
type: Reaction
kinetic law: 548213
reactant: 548201
fast: false
reversible: false

548201
type: SpeciesReference
stoichiometry: 1.0
species: metaid LAC

metaid LAC
type: Species
is: C00186
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.3981E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: lactate

metaid v37
type: Reaction
kinetic law: metaid kineticLaw v37
is: http://identifiers.org/ec-code/1.1.99.5
reversible: false
product: 549887
fast: false
name: glycerol-3-phosphate dehydrogenase (FAD dependent)
product: 549899
reactant: 549875
reactant: 549863

245549
type: LocalParameter
value: 0.001
name: Glycerol-3-phosphate dehydrogenase

245546
type: LocalParameter
value: 3.99E-8

245544
type: LocalParameter
value: 3.4E-5

549887
type: SpeciesReference
stoichiometry: 1.0
species: metaid FADH2

metaid FADH2
type: Species
is: C01352
constant: false
boundary condition: false
has only substance units: false
initial concentration: 7.2E-5
initial amount: NaN
in compartment: metaid MATRIX
name: FADH2

549899
type: SpeciesReference
stoichiometry: 1.0
species: metaid DHAP

metaid DHAP
type: Species
is: C00111
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0076925
initial amount: NaN
in compartment: metaid CYTOPLASM
name: dihydrohxyacetone-phosphate

549875
type: SpeciesReference
stoichiometry: 1.0
species: metaid FAD

metaid FAD
type: Species
is: C00016
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00101
initial amount: NaN
in compartment: metaid MATRIX
name: FAD

549863
type: SpeciesReference
stoichiometry: 1.0
species: metaid G3P

metaid G3P
type: Species
is: C00093
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0076925
initial amount: NaN
in compartment: metaid CYTOPLASM
name: glycerol-3-phosphate

metaid v17
type: Reaction
kinetic law: metaid kineticLaw v17
product: 549056
reactant: 549044
is: http://identifiers.org/ec-code/4.2.1.2
fast: false
reversible: true
name: fumarase

245114
type: LocalParameter
value: 3.8617E-7
name: FM

245111
type: LocalParameter
value: 900.0

245108
type: LocalParameter
value: 800.0

245105
type: LocalParameter
value: 5.0E-6

245103
type: LocalParameter
value: 2.5E-5

549056
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal

metaid Mal
type: Species
is: C00149
constant: false
boundary condition: false
has only substance units: false
initial concentration: 5.0E-4
initial amount: NaN
in compartment: metaid MATRIX
name: malate

549044
type: SpeciesReference
stoichiometry: 1.0
species: metaid Fum

metaid Fum
type: Species
is: C00122
constant: false
boundary condition: false
has only substance units: false
initial concentration: 6.5E-5
initial amount: NaN
in compartment: metaid MATRIX
name: fumarate

metaid Mal cyt
type: Species
is: C00149
constant: false
boundary condition: false
has only substance units: false
initial concentration: 5.0E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: malate

metaid OXA cyt
type: Species
is: C00036
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.0E-6
initial amount: NaN
in compartment: metaid CYTOPLASM
name: oxaloacetate

metaid v10
type: Reaction
product: 548744
reactant: 548720
fast: false
kinetic law: metaid kineticLaw v10
reversible: true
name: citrate synthase
product: 548756
is: http://identifiers.org/ec-code/2.3.3.1
reactant: 548732
is: http://identifiers.org/ec-code/2.3.3.3

548744
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cit

metaid Cit
type: Species
is: C00158
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.2E-4
initial amount: NaN
in compartment: metaid MATRIX
name: citrate

548720
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA

metaid OXA
type: Species
is: C00036
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.0E-6
initial amount: NaN
in compartment: metaid MATRIX
name: oxaloacetate

245004
type: LocalParameter
value: 3.8617E-7
name: CS

245002
type: LocalParameter
value: 4.0E-6

245001
type: LocalParameter
value: 1.0E-5

245000
type: LocalParameter
value: 4.8E-6

244998
type: LocalParameter
value: 1.18E-5

244997
type: LocalParameter
value: 0.005267

548756
type: SpeciesReference
stoichiometry: 1.0
species: metaid CoA

metaid CoA
type: Species
is: C00010
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.72E-4
initial amount: NaN
in compartment: metaid MATRIX
name: coenzyme A

548732
type: SpeciesReference
stoichiometry: 1.0
species: metaid Acetyl CoA

metaid Acetyl CoA
type: Species
is: C00024
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.0E-5
initial amount: NaN
in compartment: metaid MATRIX
name: acetyl CoA

metaid v1
type: Reaction
product: 548285
reactant: 548249
product: 548273
name: glucokinase
reversible: false
kinetic law: metaid kineticLaw v1
reactant: 548261
fast: false
is: http://identifiers.org/ec-code/2.7.1.2

548285
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP cyt

metaid ADP cyt
type: Species
is: C0008
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.08367E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: adenine diphosphate

548249
type: SpeciesReference
stoichiometry: 1.0
species: metaid GLC

metaid GLC
type: Species
is: C00267
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.12817E-5
initial amount: NaN
in compartment: metaid CYTOPLASM
name: glucose

548273
type: SpeciesReference
stoichiometry: 1.0
species: metaid F6P

metaid F6P
type: Species
is: C00085
constant: false
boundary condition: false
has only substance units: false
initial concentration: 6.5939E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: fructose-6-phosphate

244953
type: LocalParameter
value: 6.3E-5

244952
type: LocalParameter
value: 1.0E-4

244949
type: LocalParameter
value: 5.0E-4

548261
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP cyt

metaid ATP cyt
type: Species
is: C0002
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00449064
initial amount: NaN
in compartment: metaid CYTOPLASM
name: adenine triphosphate

244770
type: Reaction
kinetic law: 548237
reactant: 548225
fast: false
reversible: false

548225
type: SpeciesReference
stoichiometry: 1.0
species: metaid GAP

metaid GAP
type: Species
is: C00118
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.90919E-6
initial amount: NaN
in compartment: metaid CYTOPLASM
name: glyceraldehyde 3-phosphate

245647
type: Parameter
constant: true
value: 0.011

metaid Glu cyt
type: Species
is: C00025
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00303
initial amount: NaN
in compartment: metaid CYTOPLASM
name: glutamate

metaid IsoCit
type: Species
is: C00311
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.2E-4
initial amount: NaN
in compartment: metaid MATRIX
name: isocitrate

244927
type: Reaction
kinetic law: metaid kineticLaw v40
product: 549971
reactant: 549959
is version of: GO:0015217
fast: false
reversible: false
name: ATP/ADP carrier

245561
type: LocalParameter
value: 3.3211E-4
name: AAC

245558
type: LocalParameter
value: 0.012

245556
type: LocalParameter
value: 0.1667

549971
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP

metaid ADP
type: Species
is: C0008
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.5E-4
initial amount: NaN
in compartment: metaid MATRIX
name: adenine diphosphate

549959
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP cyt

metaid MT IM
type: Compartment
is: GO:0005743
constant: true
size: 1.0
spatial dimensions: 3.0
name: mitochondrial inner membrane

metaid v4
type: Reaction
product: 548405
kinetic law: metaid kineticLaw v4
reversible: false
reactant: 548381
reactant: 548393
name: glyceraldehyde 3-phosphate dehydrogenase
product: 548417
is: http://identifiers.org/ec-code/1.2.1.12
fast: false

548405
type: SpeciesReference
stoichiometry: 1.0
species: metaid DPG

metaid DPG
type: Species
is: C00236
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.99109E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: 1,2-bisphospho-D-glycerate

244965
type: LocalParameter
value: 0.001

244964
type: LocalParameter
value: 0.001

244962
type: LocalParameter
value: 0.01

548381
type: SpeciesReference
stoichiometry: 1.0
species: metaid GAP

548393
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD

metaid NAD
type: Species
in compartment: metaid CYTOPLASM
boundary condition: false
is: CHEBI:15846
is: C00003
name: NAD
has only substance units: false
initial concentration: 0.00362057
initial amount: NaN
constant: false

548417
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH cyt

metaid NADH cyt
type: Species
is: C00004
initial amount: NaN
in compartment: metaid CYTOPLASM
is: CHEBI:16908
initial concentration: 6.16118E-4
constant: false
has only substance units: false
boundary condition: false
name: NADH

metaid v7
type: Reaction
is: http://identifiers.org/ec-code/1.1.1.27
product: 548550
product: 548562
name: lactate dehydrogenase
reactant: 548538
kinetic law: metaid kineticLaw v7
reactant: 548526
reversible: true
fast: false

548550
type: SpeciesReference
stoichiometry: 1.0
species: metaid LAC

548562
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD

548538
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH cyt

244972
type: LocalParameter
value: 0.143

244971
type: LocalParameter
value: 1000.0

548526
type: SpeciesReference
stoichiometry: 1.0
species: metaid PYR cyt

metaid PYR cyt
type: Species
is: C00022
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.22702E-6
initial amount: NaN
in compartment: metaid CYTOPLASM
name: pyruvate

metaid Glu
type: Species
is: C00025
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00303
initial amount: NaN
in compartment: metaid MATRIX
name: glutamate

metaid FBP
type: Species
is: C00354
constant: false
boundary condition: false
has only substance units: false
initial concentration: 7.70135E-6
initial amount: NaN
in compartment: metaid CYTOPLASM
name: fructose-1,6-bisphosphate

metaid v25
type: Reaction
is: http://identifiers.org/ec-code/1.10.2.2
product: 549345
product: 549333
kinetic law: metaid kineticLaw v25
reactant: 549309
fast: false
reactant: 549321
name: ubiquinol:cytochrome c oxidoreductase
reversible: false

549345
type: SpeciesReference
stoichiometry: 2.0
species: metaid Cytc2p

metaid Cytc2p
type: Species
boundary condition: false
initial amount: NaN
has only substance units: false
constant: false
in compartment: metaid MT IMS
is: CHEBI:15991
is: C00125
initial concentration: 1.1E-4
name: ferricytochrome c

metaid MT IMS
type: Compartment
is: GO:0005758
constant: true
size: 1.0
spatial dimensions: 3.0
name: mitochondrial intermembrane space

549333
type: SpeciesReference
stoichiometry: 1.0
species: metaid Q

metaid Q
type: Species
is: CHEBI:16389
in compartment: metaid MT IMS
initial concentration: 0.026
is: C00399
constant: false
boundary condition: false
initial amount: NaN
name: ubiquinone
has only substance units: false

245267
type: LocalParameter
value: 2.8E-6

245276
type: LocalParameter
value: 426.8

245264
type: LocalParameter
value: 5.7E-6

245279
type: LocalParameter
value: 9.963E-9
name: Complex_III

245258
type: LocalParameter
value: 3.0E-6

245261
type: LocalParameter
value: 5.4E-6

245273
type: LocalParameter
value: 622.1

245256
type: LocalParameter
value: 2.8E-5

245270
type: LocalParameter
value: 1.9E-6

549309
type: SpeciesReference
stoichiometry: 1.0
species: metaid QH2

metaid QH2
type: Species
in compartment: metaid MT IMS
initial amount: NaN
name: ubiquinol
boundary condition: false
has only substance units: false
is: CHEBI:17976
initial concentration: 0.028
constant: false
is: C00390

549321
type: SpeciesReference
stoichiometry: 2.0
species: metaid Cytc3p

metaid Cytc3p
type: Species
constant: false
name: ferrocytochrome c
is: C00126
has only substance units: false
boundary condition: false
initial amount: NaN
in compartment: metaid MT IMS
initial concentration: 0.003
is: CHEBI:16928

metaid NADP cyt
type: Species
initial concentration: 0.00362057
is: CHEBI:18009
initial amount: NaN
constant: false
has only substance units: false
boundary condition: false
is: C00006
in compartment: metaid CYTOPLASM
name: NADP

metaid v28
type: Reaction
name: ATPase complex
is: http://identifiers.org/ec-code/3.6.1.5
reactant: 549429
reversible: true
product: 549466
reactant: 549441
fast: false
product: 549454
kinetic law: metaid kineticLaw v28
is: http://identifiers.org/ec-code/3.6.1.3

549429
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP

549466
type: SpeciesReference
stoichiometry: 1.0
species: metaid H2O

metaid H2O
type: Species
is: C00001
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001
initial amount: NaN
in compartment: metaid MATRIX
name: water

549441
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pi

metaid Pi
type: Species
is: C00009
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.004
initial amount: NaN
in compartment: metaid MATRIX
name: phosphate

549454
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP

metaid ATP
type: Species
is: C0002
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0045
initial amount: NaN
in compartment: metaid MATRIX
name: adenine triphosphate

245318
type: LocalParameter
value: 0.0033211
name: Complex_V

245315
type: LocalParameter
value: 0.047

245312
type: LocalParameter
value: 0.0045

245310
type: LocalParameter
value: 0.075

metaid Pyr
type: Species
is: C00022
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.001025
initial amount: NaN
in compartment: metaid MATRIX
name: pyruvate

metaid v36
type: Reaction
reactant: 549815
reactant: 549803
reversible: true
reactant: 549791
is: http://identifiers.org/ec-code/6.4.1.1
product: 549839
product: 549851
product: 549827
name: pyruvate decarboxylase
fast: false
kinetic law: metaid kineticLaw v36

549815
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pyr

549803
type: SpeciesReference
stoichiometry: 1.0
species: metaid CO2

metaid CO2
type: Species
is: C00011
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00163
initial amount: NaN
in compartment: metaid MATRIX
name: carbon dioxide

549791
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP

549839
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP

549851
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA

549827
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pi

245543
type: LocalParameter
value: 3.8617E-7
name: PC

245510
type: LocalParameter
value: 2.4E-4

245522
type: LocalParameter
value: 0.0016

245499
type: LocalParameter
value: 1.1E-4

245501
type: LocalParameter
value: 0.00163

245519
type: LocalParameter
value: 1.5E-4

245537
type: LocalParameter
value: 200.0

245528
type: LocalParameter
value: 0.0079

245516
type: LocalParameter
value: 9.0

245507
type: LocalParameter
value: 0.016

245513
type: LocalParameter
value: 5.1E-5

245540
type: LocalParameter
value: 20.0

245504
type: LocalParameter
value: 3.7E-4

245534
type: LocalParameter
value: 2.4E-4

245531
type: LocalParameter
value: 1.9E-4

245525
type: LocalParameter
value: 1.3E-4

metaid v16
type: Reaction
product: 549032
product: 549020
reactant: 549008
kinetic law: metaid kineticLaw v16
is: http://identifiers.org/ec-code/1.3.5.1
reactant: 548996
reversible: true
name: succinate dehydrogenase
fast: false

549032
type: SpeciesReference
stoichiometry: 1.0
species: metaid QH2

549020
type: SpeciesReference
stoichiometry: 1.0
species: metaid Fum

549008
type: SpeciesReference
stoichiometry: 1.0
species: metaid Q

245081
type: LocalParameter
value: 3.0E-7

245096
type: LocalParameter
value: 69.3

245099
type: LocalParameter
value: 1.73

245087
type: LocalParameter
value: 4.1E-6

245084
type: LocalParameter
value: 1.5E-6

245078
type: LocalParameter
value: 6.9E-5

245090
type: LocalParameter
value: 5.6E-6

245102
type: LocalParameter
value: 9.9211E-5
name: SDH

245093
type: LocalParameter
value: 0.037

245076
type: LocalParameter
value: 3.0E-5

548996
type: SpeciesReference
stoichiometry: 1.0
species: metaid Suc

metaid Suc
type: Species
is: C00042
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00295
initial amount: NaN
in compartment: metaid MATRIX
name: succinate

244935
type: Reaction
kinetic law: metaid kineticLaw v43
product: 550103
reactant: 550091
is version of: GO:0005347
fast: false
reversible: false
name: ATP/ADP carrier

245630
type: LocalParameter
value: 3.3211E-4
name: AAC

245627
type: LocalParameter
value: 0.005

245625
type: LocalParameter
value: 1.11667

550103
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP cyt

550091
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP

metaid Ala
type: Species
is: C00041
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00344
initial amount: NaN
in compartment: metaid MATRIX
name: slanine

metaid NAD p
type: Species
is: C00003
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0101
initial amount: NaN
in compartment: metaid MATRIX
name: NAD+

metaid ETFox
type: Species
is: C04253
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.2E-4
initial amount: NaN
in compartment: metaid MATRIX
name: electron transfer flavoprotein (oxidised form)

metaid OG cyt
type: Species
is: C00026
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.1E-5
initial amount: NaN
in compartment: metaid CYTOPLASM
name: oxoglutarate

metaid NADPH
type: Species
is: C00005
constant: false
boundary condition: false
has only substance units: false
initial concentration: 7.2E-5
initial amount: NaN
in compartment: metaid MATRIX
name: NADPH

metaid CoA cyt
type: Species
is: C00010
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.72E-4
initial amount: NaN
in compartment: metaid CYTOPLASM
name: coenzyme A

244903
type: Reaction
reactant: 549647
fast: false
is version of: GO:0015137
name: citrate carrier
product: 549683
product: 549671
kinetic law: metaid kineticLaw v33
reversible: true
reactant: 549659

549647
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cit cyt

549683
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cit

549671
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal cyt

245429
type: LocalParameter
value: 1.0

245432
type: LocalParameter
value: 1.0

245423
type: LocalParameter
value: 3.5

245438
type: LocalParameter
value: 3.3211E-4
name: CIC

245414
type: LocalParameter
value: 3.3E-4

245420
type: LocalParameter
value: 5.6

245426
type: LocalParameter
value: 1.0

245435
type: LocalParameter
value: 1.0

245417
type: LocalParameter
value: 4.18E-5

245409
type: LocalParameter
value: 1.3E-4

245411
type: LocalParameter
value: 4.4E-4

549659
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal

metaid v41
type: Reaction
reactant: 549983
modifier: 550031
product: 550007
reversible: true
product: 550019
fast: false
kinetic law: metaid kineticLaw v41
name: cytosolic isocitrate dehydrogenase
is: http://identifiers.org/ec-code/1.1.1.42
reactant: 549995

549983
type: SpeciesReference
stoichiometry: 1.0
species: metaid IsoCitcyt

550007
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG cyt

550019
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADPH cyt

metaid NADPH cyt
type: Species
is: CHEBI:16474
initial amount: NaN
is: C00005
boundary condition: false
initial concentration: 6.16118E-4
constant: false
has only substance units: false
name: NADPH
in compartment: metaid CYTOPLASM

245574
type: LocalParameter
value: 3.7E-7

245564
type: LocalParameter
value: 9.5E-8

245573
type: LocalParameter
value: 0.066

245588
type: LocalParameter
value: 9.4E-8

245579
type: LocalParameter
value: 2.5E-4

245570
type: LocalParameter
value: 9.0E-8

245562
type: LocalParameter
value: 0.051

245594
type: LocalParameter
value: 3.8617E-7
name: IDHc

245567
type: LocalParameter
value: 9.6E-7

245585
type: LocalParameter
value: 1.3E-10

245582
type: LocalParameter
value: 6.0E-12

245576
type: LocalParameter
value: 2.9E-5

245591
type: LocalParameter
value: 4.6E-14

549995
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADP cyt

metaid v21
type: Reaction
fast: false
kinetic law: metaid kineticLaw v21
product: 549201
product: 549189
is: http://identifiers.org/ec-code/2.6.1.1
reactant: 549177
reactant: 549165
reversible: true
name: aspartate transaminase

245189
type: LocalParameter
value: 6.2

245198
type: LocalParameter
value: 3.8617E-7
name: AspTA

245192
type: LocalParameter
value: 300.0

245174
type: LocalParameter
value: 1.0E-4

245177
type: LocalParameter
value: 4.0E-5

245186
type: LocalParameter
value: 0.0083

245180
type: LocalParameter
value: 0.004

245195
type: LocalParameter
value: 1000.0

245172
type: LocalParameter
value: 9.0E-4

245183
type: LocalParameter
value: 0.002

549201
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG

metaid OG
type: Species
is: C00026
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.1E-5
initial amount: NaN
in compartment: metaid MATRIX
name: oxoglutarate

549189
type: SpeciesReference
stoichiometry: 1.0
species: metaid Asp

metaid Asp
type: Species
is: C00049
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00114
initial amount: NaN
in compartment: metaid MATRIX
name: aspartate

549177
type: SpeciesReference
stoichiometry: 1.0
species: metaid Glu

549165
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA

metaid v39
type: Reaction
reactant: 550127
is: http://identifiers.org/ec-code/1.1.1.40
product: 550151
reversible: true
product: 550139
kinetic law: metaid kineticLaw v39
reactant: 550115
name: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
fast: false

550127
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADP cyt

550151
type: SpeciesReference
stoichiometry: 1.0
species: metaid PYR cyt

550139
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADPH cyt

245639
type: LocalParameter
value: 3.8617E-7
name: MDH

245636
type: LocalParameter
value: 0.011

245633
type: LocalParameter
value: 1.25E-4

245631
type: LocalParameter
value: 0.333

550115
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal cyt

metaid Acetyl CoA cyt
type: Species
is: C00024
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.0E-5
initial amount: NaN
in compartment: metaid CYTOPLASM
name: acetyl CoA

metaid v6
type: Reaction
reactant: 548489
reactant: 548477
product: 548501
reversible: false
name: pyruvate kinase
fast: false
kinetic law: metaid kineticLaw v6
product: 548514
is: http://identifiers.org/ec-code/2.7.1.40

548489
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP cyt

548477
type: SpeciesReference
stoichiometry: 1.0
species: metaid PEP

metaid PEP
type: Species
is: C00074
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.1125E-6
initial amount: NaN
in compartment: metaid CYTOPLASM
name: phosphoenolpyruvate

548501
type: SpeciesReference
stoichiometry: 1.0
species: metaid PYR cyt

244970
type: LocalParameter
value: 3.0E-4

244969
type: LocalParameter
value: 2.0E-4

244968
type: LocalParameter
value: 0.01

548514
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP cyt

metaid v44
type: Reaction
kinetic law: metaid kineticLaw v44
reversible: true
reactant: 550163
name: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
product: 550187
is: http://identifiers.org/ec-code/1.1.1.40
product: 550199
fast: false
reactant: 550175

245645
type: LocalParameter
value: 3.8617E-7
name: MDH

245642
type: LocalParameter
value: 0.01295

245640
type: LocalParameter
value: 130.5

550163
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal

550187
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADPH

550199
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pyr

550175
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADP p

metaid NADP p
type: Species
is: C00006
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0101
initial amount: NaN
in compartment: metaid MATRIX
name: NADP+

metaid v24
type: Reaction
reactant: 549261
fast: false
reactant: 549273
is: http://identifiers.org/ec-code/2.7.4.6
name: NADH:ubiquinone oxidoreductase
product: 549297
reversible: true
kinetic law: metaid kineticLaw v24
product: 549285

549261
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH

metaid NADH
type: Species
is: C00004
constant: false
boundary condition: false
has only substance units: false
initial concentration: 7.2E-4
initial amount: NaN
in compartment: metaid MATRIX
name: NADH

549273
type: SpeciesReference
stoichiometry: 1.0
species: metaid Q

549297
type: SpeciesReference
stoichiometry: 1.0
species: metaid QH2

245249
type: LocalParameter
value: 498.0

245246
type: LocalParameter
value: 407.9

245243
type: LocalParameter
value: 9.8E-8

245255
type: LocalParameter
value: 3.3211E-4
name: Complex_I

245237
type: LocalParameter
value: 5.9E-5

245234
type: LocalParameter
value: 9.9E-6

245252
type: LocalParameter
value: 229.0

245240
type: LocalParameter
value: 2.1E-8

245231
type: LocalParameter
value: 2.6E-4

245229
type: LocalParameter
value: 9.2E-6

549285
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD p

metaid ETFred
type: Species
is: C04570
constant: false
boundary condition: false
has only substance units: false
initial concentration: 3.1E-4
initial amount: NaN
in compartment: metaid MATRIX
name: electron transfer flavoprotein (reduced form)

metaid v32
type: Reaction
kinetic law: metaid kineticLaw v32
is: http://identifiers.org/ec-code/2.6.1.1
reactant: 549611
fast: false
reversible: true
product: 549635
product: 549623
name: aspartate transaminase
reactant: 549599

245387
type: LocalParameter
value: 1.0E-4

245396
type: LocalParameter
value: 0.002

245385
type: LocalParameter
value: 9.0E-4

245390
type: LocalParameter
value: 4.0E-5

245399
type: LocalParameter
value: 6.2

245402
type: LocalParameter
value: 300.0

245397
type: LocalParameter
value: 0.0083

245405
type: LocalParameter
value: 1000.0

245408
type: LocalParameter
value: 3.8617E-7
name: AspTA

245393
type: LocalParameter
value: 0.004

549611
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG cyt

549635
type: SpeciesReference
stoichiometry: 1.0
species: metaid Glu cyt

549623
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA cyt

549599
type: SpeciesReference
stoichiometry: 1.0
species: metaid Asp cyt

metaid Asp cyt
type: Species
is: C00049
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.00114
initial amount: NaN
in compartment: metaid CYTOPLASM
name: aspartate

metaid v12
type: Reaction
modifier: 548840
kinetic law: metaid kineticLaw v12
product: 548828
name: isocitrate dehydrogenase (NAD+) (alpha/beta/gamma)
fast: false
reactant: 548792
reversible: false
product: 548816
is: http://identifiers.org/ec-code/1.1.1.41
reactant: 548804

245020
type: LocalParameter
value: 3.8617E-7
name: IDHa

245012
type: LocalParameter
value: 105.0

245016
type: LocalParameter
value: 7.8E-5

245014
type: LocalParameter
value: 29.6

245015
type: LocalParameter
value: 2.3E-4

245018
type: LocalParameter
value: 6.4E-4

245019
type: LocalParameter
value: 3.6E-4

548828
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH

548792
type: SpeciesReference
stoichiometry: 1.0
species: metaid IsoCit

548816
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG

548804
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD p

metaid v3
type: Reaction
kinetic law: metaid kineticLaw v3
product: 548369
reactant: 548357
is: http://identifiers.org/ec-code/4.1.2.13
fast: false
reversible: true
name: fructose-bisphosphate aldolase

244960
type: LocalParameter
value: 0.05

244959
type: LocalParameter
value: 1.0

548369
type: SpeciesReference
stoichiometry: 2.0
species: metaid GAP

548357
type: SpeciesReference
stoichiometry: 1.0
species: metaid FBP

metaid SCoA
type: Species
is: C00091
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.941E-4
initial amount: NaN
in compartment: metaid MATRIX
name: succinyl-CoA

244804
type: Reaction
kinetic law: metaid kineticLaw v8
product: 548635
reactant: 548622
is version of: GO:0005477
fast: false
reversible: true
name: pyruvate carrier

244978
type: LocalParameter
value: 3.3211E-4
name: PYC

244976
type: LocalParameter
value: 1.5E-7

244975
type: LocalParameter
value: 1.0E-8

548635
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pyr

548622
type: SpeciesReference
stoichiometry: 1.0
species: metaid PYR cyt

metaid v9
type: Reaction
reversible: false
name: pyruvate dehydrogenase complex
reactant: 548672
fast: false
product: 548684
product: 548708
reactant: 548659
reactant: 548647
product: 548696
is: http://identifiers.org/ec-code/1.2.4.1
kinetic law: metaid kineticLaw v9

548672
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD p

548684
type: SpeciesReference
stoichiometry: 1.0
species: metaid CO2

548708
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH

548659
type: SpeciesReference
stoichiometry: 1.0
species: metaid CoA

548647
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pyr

548696
type: SpeciesReference
stoichiometry: 1.0
species: metaid Acetyl CoA

244992
type: LocalParameter
value: 3.5E-5

244987
type: LocalParameter
value: 5.5E-4

244995
type: LocalParameter
value: 856.0

244984
type: LocalParameter
value: 5.9E-7

244991
type: LocalParameter
value: 6.0E-5

244994
type: LocalParameter
value: 3.6E-5

244980
type: LocalParameter
value: 2.5E-5

244983
type: LocalParameter
value: 5.0E-5

244986
type: LocalParameter
value: 6.9E-7

244982
type: LocalParameter
value: 1.3E-5

244988
type: LocalParameter
value: 3.0E-4

244990
type: LocalParameter
value: 1.8E-4

244996
type: LocalParameter
value: 3.8617E-7
name: PDC

metaid v27
type: Reaction
reactant: 549393
is: http://identifiers.org/ec-code/2.3.3.1
is: http://identifiers.org/ec-code/2.3.3.3
kinetic law: metaid kineticLaw v27
fast: false
reversible: true
product: 549405
product: 549417
name: citrate synthase
reactant: 549381

549393
type: SpeciesReference
stoichiometry: 1.0
species: metaid CoA cyt

245303
type: LocalParameter
value: 0.0043

245294
type: LocalParameter
value: 3.9E-5

245291
type: LocalParameter
value: 4.5E-6

245297
type: LocalParameter
value: 5.0E-6

245309
type: LocalParameter
value: 3.8617E-7
name: CS

245286
type: LocalParameter
value: 0.004833

245300
type: LocalParameter
value: 4.5E-6

245288
type: LocalParameter
value: 5.0E-6

245306
type: LocalParameter
value: 1.8E7

549405
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA cyt

549417
type: SpeciesReference
stoichiometry: 1.0
species: metaid Acetyl CoA cyt

549381
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cit cyt

244767
type: Reaction
kinetic law: 548189
product: 548177
fast: false
reversible: true

244946
type: LocalParameter
value: 64.941

548177
type: SpeciesReference
stoichiometry: 1.0
species: metaid GLC

metaid v35
type: Reaction
reactant: 549743
product: 549779
name: glutathione reductase
kinetic law: metaid kineticLaw v35
is: http://identifiers.org/ec-code/1.8.1.7
fast: false
reversible: true
reactant: 549755
product: 549767

549743
type: SpeciesReference
stoichiometry: 1.0
species: metaid FADH2

549779
type: SpeciesReference
stoichiometry: 1.0
species: metaid FAD

245474
type: LocalParameter
value: 2.42E-5

245489
type: LocalParameter
value: 8.99

245495
type: LocalParameter
value: 0.3

245468
type: LocalParameter
value: 1.2E-7

245492
type: LocalParameter
value: 2.18

245466
type: LocalParameter
value: 3.9E-5

245471
type: LocalParameter
value: 1.08E-6

245498
type: LocalParameter
value: 3.3211E-5

245486
type: LocalParameter
value: 1.19E-5

245480
type: LocalParameter
value: 2.4E-7

245477
type: LocalParameter
value: 7.6E-5

245483
type: LocalParameter
value: 7.53E-5

549755
type: SpeciesReference
stoichiometry: 1.0
species: metaid ETFox

549767
type: SpeciesReference
stoichiometry: 1.0
species: metaid ETFred

metaid v15
type: Reaction
product: 548984
product: 548972
reactant: 548936
product: 548960
is: http://identifiers.org/ec-code/6.2.1.4
fast: false
reversible: true
name: succinyl-CoA synthetase
kinetic law: metaid kineticLaw v15
reactant: 548924
reactant: 548948

548984
type: SpeciesReference
stoichiometry: 1.0
species: metaid CoA

548972
type: SpeciesReference
stoichiometry: 1.0
species: metaid GTP

metaid GTP
type: Species
is: C00044
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0045
initial amount: NaN
in compartment: metaid MATRIX
name: guanosine triphosphate

548936
type: SpeciesReference
stoichiometry: 1.0
species: metaid SCoA

548960
type: SpeciesReference
stoichiometry: 1.0
species: metaid Suc

245049
type: LocalParameter
value: 6.0E-4

245063
type: LocalParameter
value: 0.07

245073
type: LocalParameter
value: 100.0

245045
type: LocalParameter
value: 6.0E-4

245054
type: LocalParameter
value: 4.0E-4

245042
type: LocalParameter
value: 3.5E-5

245072
type: LocalParameter
value: 100.0

245040
type: LocalParameter
value: 5.0E-6

245057
type: LocalParameter
value: 2.0E-5

245051
type: LocalParameter
value: 8.375

245046
type: LocalParameter
value: 7.5E-6

245060
type: LocalParameter
value: 3.0E-5

245048
type: LocalParameter
value: 4.5E-4

245075
type: LocalParameter
value: 3.8617E-7
name: SCS

245069
type: LocalParameter
value: 6.7E-6

245066
type: LocalParameter
value: 5.0E-6

245043
type: LocalParameter
value: 4.5E-4

548924
type: SpeciesReference
stoichiometry: 1.0
species: metaid GDP

metaid GDP
type: Species
is: C00035
constant: false
boundary condition: false
has only substance units: false
initial concentration: 4.5E-4
initial amount: NaN
in compartment: metaid MATRIX
name: guanosine diphosphate

548948
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pi

244862
type: Reaction
kinetic law: metaid kineticLaw v22
product: 549249
product: 549237
reactant: 549225
reactant: 549213
fast: false
reversible: true
name: aspartate/glutamate carrier

245228
type: LocalParameter
value: 3.3211E-4
name: AGC

245204
type: LocalParameter
value: 1.8E-4

245201
type: LocalParameter
value: 0.0032

245219
type: LocalParameter
value: 1.0

245199
type: LocalParameter
value: 8.0E-5

245210
type: LocalParameter
value: 10.0

245225
type: LocalParameter
value: 1.0

245222
type: LocalParameter
value: 1.0

245207
type: LocalParameter
value: 0.0028

245213
type: LocalParameter
value: 10.0

245216
type: LocalParameter
value: 1.0

549249
type: SpeciesReference
stoichiometry: 1.0
species: metaid Glu

549237
type: SpeciesReference
stoichiometry: 1.0
species: metaid Asp cyt

549225
type: SpeciesReference
stoichiometry: 1.0
species: metaid Asp

549213
type: SpeciesReference
stoichiometry: 1.0
species: metaid Glu cyt

metaid v20
type: Reaction
reversible: true
reactant: 549117
name: alanine transaminase
product: 549153
reactant: 549129
is: http://identifiers.org/ec-code/2.6.1.2
fast: false
kinetic law: metaid kineticLaw v20
product: 549141

549117
type: SpeciesReference
stoichiometry: 1.0
species: metaid Ala

549153
type: SpeciesReference
stoichiometry: 1.0
species: metaid Pyr

549129
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG

245156
type: LocalParameter
value: 0.0087

245159
type: LocalParameter
value: 0.012

245171
type: LocalParameter
value: 3.8617E-7
name: AlaTA

245162
type: LocalParameter
value: 0.69

245147
type: LocalParameter
value: 4.0E-4

245145
type: LocalParameter
value: 0.002

245150
type: LocalParameter
value: 0.032

245165
type: LocalParameter
value: 337.0

245168
type: LocalParameter
value: 0.15

245153
type: LocalParameter
value: 4.0E-4

549141
type: SpeciesReference
stoichiometry: 1.0
species: metaid Glu

metaid v38
type: Reaction
reactant: 549911
reactant: 549923
reversible: false
kinetic law: metaid kineticLaw v38
fast: false
name: glycerol-3-phosphate dehydrogenase (NAD+ dependent)
is: http://identifiers.org/ec-code/1.1.1.8
product: 549947
product: 549935

549911
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH cyt

549923
type: SpeciesReference
stoichiometry: 1.0
species: metaid DHAP

245555
type: LocalParameter
value: 0.001
name: Glycerol-3-phosphate dehydrogenase

245552
type: LocalParameter
value: 0.0399

245550
type: LocalParameter
value: 34.0

549947
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD

549935
type: SpeciesReference
stoichiometry: 1.0
species: metaid G3P

metaid v18
type: Reaction
kinetic law: metaid kineticLaw v18
fast: false
reactant: 549068
reactant: 549080
product: 549105
name: malate dehydrogenase (mitochondrion)
product: 549092
reversible: true
is: http://identifiers.org/ec-code/1.1.1.37

245135
type: LocalParameter
value: 0.0019

245144
type: LocalParameter
value: 3.8617E-7
name: MDH

245117
type: LocalParameter
value: 1.1E-4

245141
type: LocalParameter
value: 0.04

245120
type: LocalParameter
value: 0.0016

245126
type: LocalParameter
value: 1.1E-5

245115
type: LocalParameter
value: 7.2E-5

245132
type: LocalParameter
value: 0.0071

245138
type: LocalParameter
value: 0.39

245123
type: LocalParameter
value: 1.7E-4

245129
type: LocalParameter
value: 1.0E-4

549068
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal

549080
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD p

549105
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA

549092
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH

metaid AMP
type: Species
is: C00020
constant: false
boundary condition: false
has only substance units: false
initial concentration: 2.61149E-6
initial amount: NaN
in compartment: metaid CYTOPLASM
name: adenine monophosphate

W3 CDTF: Tue Nov 29 12:14:22 GMT 2011

metaid v2
type: Reaction
product: 548333
is: http://identifiers.org/ec-code/2.7.1.11
name: 6-phosphofructokinase
reversible: false
fast: false
reactant: 548297
kinetic law: metaid kineticLaw v2
modifier: 548345
product: 548321
reactant: 548309

548333
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP cyt

548297
type: SpeciesReference
stoichiometry: 1.0
species: metaid F6P

244958
type: LocalParameter
value: 1.0E-5

244956
type: LocalParameter
value: 0.017

244955
type: LocalParameter
value: 1.6E-9

244954
type: LocalParameter
value: 0.0015

548321
type: SpeciesReference
stoichiometry: 1.0
species: metaid FBP

548309
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP cyt

metaid v5
type: Reaction
is: http://identifiers.org/ec-code/5.4.2.4
reactant: 548441
product: 548465
name: bisphosphoglycerate phosphotase (1/2)
reversible: true
product: 548453
is: http://identifiers.org/ec-code/5.4.2.1
fast: false
reactant: 548429
kinetic law: metaid kineticLaw v5

548441
type: SpeciesReference
stoichiometry: 1.0
species: metaid ADP cyt

548465
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP cyt

548453
type: SpeciesReference
stoichiometry: 1.0
species: metaid PEP

548429
type: SpeciesReference
stoichiometry: 1.0
species: metaid DPG

244967
type: LocalParameter
value: 500.0

244966
type: LocalParameter
value: 1000.0

244803
type: Reaction
kinetic law: 548610
product: 548598
reactant: 548586
reactant: 548574
is version of: GO:0004017
fast: false
reversible: true

244974
type: LocalParameter
value: 10000.0

244973
type: LocalParameter
value: 10000.0

548598
type: SpeciesReference
stoichiometry: 2.0
species: metaid ADP cyt

548586
type: SpeciesReference
stoichiometry: 1.0
species: metaid ATP cyt

548574
type: SpeciesReference
stoichiometry: 1.0
species: metaid AMP

metaid v31
type: Reaction
reversible: false
reactant: 549550
product: 549587
fast: false
name: malate dehydrogenase (cytosol)
product: 549574
is: http://identifiers.org/ec-code/1.1.1.37
reactant: 549562
kinetic law: metaid kineticLaw v31

549550
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH cyt

549587
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD

549574
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal cyt

549562
type: SpeciesReference
stoichiometry: 1.0
species: metaid OXA cyt

245384
type: LocalParameter
value: 3.8617E-7
name: MDH

245363
type: LocalParameter
value: 3.5E7

245372
type: LocalParameter
value: 26.0

245361
type: LocalParameter
value: 3.4E7

245366
type: LocalParameter
value: 4650.0

245375
type: LocalParameter
value: 1400.0

245369
type: LocalParameter
value: 214.0

245378
type: LocalParameter
value: 570000.0

245381
type: LocalParameter
value: 260000.0

244893
type: Reaction
product: 549526
name: oxoglutarate carrier
reactant: 549502
reversible: true
reactant: 549514
fast: false
is version of: GO:0015367
product: 549538
kinetic law: metaid kineticLaw v30

549526
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG cyt

549502
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal cyt

549514
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG

549538
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal

245360
type: LocalParameter
value: 3.3211E-4
name: OGC

245333
type: LocalParameter
value: 7.0E-4

245345
type: LocalParameter
value: 4.83

245336
type: LocalParameter
value: 0.0014

245354
type: LocalParameter
value: 1.0

245339
type: LocalParameter
value: 1.7E-4

245331
type: LocalParameter
value: 3.0E-4

245348
type: LocalParameter
value: 1.0

245357
type: LocalParameter
value: 1.0

245342
type: LocalParameter
value: 3.675

245351
type: LocalParameter
value: 1.0

metaid v26
type: Reaction
kinetic law: metaid kineticLaw v26
product: 549369
reactant: 549357
is: http://identifiers.org/ec-code/1.9.3.1
fast: false
reversible: false
name: cytochrome c oxidase

245285
type: LocalParameter
value: 0.002325
name: Complex_IV

245282
type: LocalParameter
value: 9.35E-4

245280
type: LocalParameter
value: 1.1E-4

549369
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cytc3p

549357
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cytc2p

metaid v11
type: Reaction
kinetic law: metaid kineticLaw v11
product: 548780
reactant: 548768
is: http://identifiers.org/ec-code/4.2.1.3
fast: false
reversible: true
name: aconitase

245010
type: LocalParameter
value: 3.8617E-7
name: ACO

245008
type: LocalParameter
value: 31.44

245007
type: LocalParameter
value: 20.47

245006
type: LocalParameter
value: 1.1E-4

245005
type: LocalParameter
value: 5.0E-4

548780
type: SpeciesReference
stoichiometry: 1.0
species: metaid IsoCit

548768
type: SpeciesReference
stoichiometry: 1.0
species: metaid Cit

ORG:
  orgname: University of Manchester
n:
  given: Kieran
  family: Smallbone

metaid v34
type: Reaction
product: 549731
product: 549719
is: http://identifiers.org/ec-code/1.5.5.1
fast: false
name: ETF:Q oxidoreductase
reactant: 549707
reactant: 549695
reversible: true
kinetic law: metaid kineticLaw v34

549731
type: SpeciesReference
stoichiometry: 1.0
species: metaid QH2

549719
type: SpeciesReference
stoichiometry: 1.0
species: metaid ETFox

549707
type: SpeciesReference
stoichiometry: 1.0
species: metaid Q

549695
type: SpeciesReference
stoichiometry: 1.0
species: metaid ETFred

245465
type: LocalParameter
value: 3.3211E-5

245441
type: LocalParameter
value: 3.9E-7

245450
type: LocalParameter
value: 3.1E-7

245459
type: LocalParameter
value: 78.0

245439
type: LocalParameter
value: 3.1E-7

245462
type: LocalParameter
value: 101.0

245444
type: LocalParameter
value: 3.2E-7

245456
type: LocalParameter
value: 0.66

245453
type: LocalParameter
value: 3.0E-7

245447
type: LocalParameter
value: 4.2E-9

metaid v14
type: Reaction
is: http://identifiers.org/ec-code/1.2.4.2
product: 548888
reversible: false
name: oxoglutarate dehydrogenase complex
kinetic law: metaid kineticLaw v14
reactant: 548876
product: 548912
product: 548900
reactant: 548864
reactant: 548852
fast: false

548888
type: SpeciesReference
stoichiometry: 1.0
species: metaid CO2

245031
type: LocalParameter
value: 1.0E-4

245021
type: LocalParameter
value: 2.2E-4

245030
type: LocalParameter
value: 7.4E-4

245033
type: LocalParameter
value: 1.1E-6

245025
type: LocalParameter
value: 3.0E-4

245034
type: LocalParameter
value: 8.1E-5

245022
type: LocalParameter
value: 2.5E-5

245027
type: LocalParameter
value: 6.0E-4

245037
type: LocalParameter
value: 177.0

245036
type: LocalParameter
value: 2.5E-5

245024
type: LocalParameter
value: 5.0E-5

245039
type: LocalParameter
value: 3.8617E-7
name: OGDC

245028
type: LocalParameter
value: 7.2E-4

548876
type: SpeciesReference
stoichiometry: 1.0
species: metaid NAD p

548912
type: SpeciesReference
stoichiometry: 1.0
species: metaid NADH

548900
type: SpeciesReference
stoichiometry: 1.0
species: metaid SCoA

548864
type: SpeciesReference
stoichiometry: 1.0
species: metaid CoA

548852
type: SpeciesReference
stoichiometry: 1.0
species: metaid OG

244933
type: Reaction
name: citrate carrier
kinetic law: metaid kineticLaw v42
product: 550067
fast: false
reactant: 550043
product: 550079
reversible: true
is version of: GO:0006843
reactant: 550055

245618
type: LocalParameter
value: 1.0

245609
type: LocalParameter
value: 3.5

245612
type: LocalParameter
value: 1.0

245600
type: LocalParameter
value: 3.3E-4

245615
type: LocalParameter
value: 1.0

245621
type: LocalParameter
value: 1.0

245603
type: LocalParameter
value: 4.18E-5

245597
type: LocalParameter
value: 4.4E-4

245606
type: LocalParameter
value: 5.6

245624
type: LocalParameter
value: 3.3211E-4
name: CIC

245595
type: LocalParameter
value: 1.3E-4

550067
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal cyt

550043
type: SpeciesReference
stoichiometry: 1.0
species: metaid IsoCitcyt

550079
type: SpeciesReference
stoichiometry: 1.0
species: metaid IsoCit

550055
type: SpeciesReference
stoichiometry: 1.0
species: metaid Mal

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

W3 CDTF: Wed Jun 05 22:07:22 BST 2013