BIOMD0000000227
type: SBMLModel
reaction: metaid_0000203
parameter: metaid_0000005
reaction: metaid_0000178
reaction: metaid_0000155
species: metaid_0000148
reaction: metaid_0000183
species: metaid_0000103
reaction: metaid_0000160
species: metaid_0000143
parameter: metaid_0000022
curated: true
parameter: metaid_0000017
reaction: metaid_0000167
reaction: metaid_0000172
parameter: metaid_0000045
species: metaid_0000151
species: metaid_0000131
reaction: metaid_0000204
parameter: metaid_0000034
reaction: metaid_0000179
species: metaid_0000147
parameter: metaid_0000006
parameter: metaid_0000062
is derived from: BIOMD0000000139
reaction: metaid_0000197
reaction: metaid_0000184
parameter: metaid_0000057
species: metaid_0000114
species: metaid_0000129
parameter: metaid_0000018
species: metaid_0000135
parameter: metaid_0000074
species: metaid_0000150
parameter: metaid_0000046
parameter: metaid_0000084
species: metaid_0000102
species: metaid_0000142
species: metaid_0000117
parameter: metaid_0000063
species: metaid_0000097
parameter: metaid_0000058
reaction: metaid_0000201
reaction: metaid_0000191
parameter: metaid_0000003
reaction: metaid_0000153
species: metaid_0000146
parameter: metaid_0000075
reaction: metaid_0000181
area units: metaid_0000005
species: metaid_0000139
species: metaid_0000101
is: MODEL7743656488
parameter: metaid_0000085
time units: metaid_0000029
parameter: metaid_0000020
parameter: metaid_0000015
reaction: metaid_0000165
reaction: metaid_0000170
parameter: metaid_0000043
reaction: metaid_0000202
reaction: metaid_0000177
species: metaid_0000105
parameter: metaid_0000032
volume units: metaid_0000069
species: metaid_0000145
parameter: metaid_0000004
parameter: metaid_0000060
species: metaid_0000096
reaction: metaid_0000195
reaction: metaid_0000182
parameter: metaid_0000055
reaction: metaid_0000209
reaction: metaid_0000189
parameter: metaid_0000029
species: metaid_0000133
parameter: metaid_0000016
parameter: metaid_0000072
parameter: metaid_0000044
species: metaid_0000127

metaid_0000203
type: Reaction
kinetic law: 994482
product: 994470
reactant: 994458
reactant: 994446
fast: false
reversible: false

994470
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000136

metaid_0000136
type: Species
has only substance units: false
boundary condition: false
name: NFkB:IkB_alpha
in compartment: metaid_0000092
constant: false
has part: Q9Z1E3
initial amount: 0.0
has part: Q04207
initial concentration: NaN
has part: P25799

metaid_0000092
type: Compartment
is version of: GO:0005634
constant: true
size: 1.0
spatial dimensions: 3.0
name: nucleus

994458
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000096

metaid_0000096
type: Species
is version of: Q9Z1E3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: IkB_alpha

994446
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000139

metaid_0000139
type: Species
has only substance units: false
boundary condition: false
constant: false
has part: Q04207
has part: P25799
name: NFkB
in compartment: metaid_0000092
initial concentration: NaN
initial amount: 0.0

metaid_0000005
type: Parameter
constant: true
value: 1.0E-5

metaid_0000178
type: Reaction
kinetic law: 993450
product: 993438
reactant: 993426
fast: false
reversible: false

993438
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000104

metaid_0000104
type: Species
is version of: ENSMUST00000025867
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: mRNAp65

metaid_0000091
type: Compartment
is: GO:0005829
constant: true
size: 1.0
spatial dimensions: 3.0

993426
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000127

metaid_0000127
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: ActivePRaseonp65

metaid_0000155
type: Reaction
kinetic law: 992270
product: 992257
reactant: 992244
reactant: 992231
fast: false
reversible: false

992257
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000151

metaid_0000151
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: IkBa:RNAP3:FTAz:p50p65

992244
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000147

metaid_0000147
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: PromIkBa:RNAP3:FTAz

992231
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000139

metaid_0000148
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: InactivePRaseonIkB_alpha

metaid_0000183
type: Reaction
kinetic law: 993642
product: 993630
reactant: 993618
fast: false
reversible: false

993630
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000110

metaid_0000110
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa12_degraded

993618
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000130

metaid_0000130
type: Species
is version of: ENSMUST00000021413
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: mRNAIKB_alpha

metaid_0000103
type: Species
is part of: P25799
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: p50

metaid_0000160
type: Reaction
kinetic law: 992530
product: 992517
reactant: 992504
reactant: 992491
fast: false
reversible: false

992517
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000145

metaid_0000145
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: Promp105:RNAP1:FTAx:p50p65:IkBa

992504
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000096

992491
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000144

metaid_0000144
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: Promp105:RNAP1:FTAx:p50p65

metaid_0000143
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: Promp105:RNAP:FTAX

metaid_0000022
type: Parameter
constant: true
value: 4.0E-4

metaid_0000017
type: Parameter
constant: true
value: 0.5

metaid_0000167
type: Reaction
kinetic law: 992894
product: 992881
reactant: 992868
reactant: 992855
fast: false
reversible: false

992881
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000138

metaid_0000138
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: Promp65:RNAP2:FTAy

992868
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000094

metaid_0000094
type: Species
is version of: Q04863
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 3.33333333333333E-4
in compartment: metaid_0000092
name: FTAy

992855
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000137

metaid_0000137
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 6.66666666666667E-6
in compartment: metaid_0000092
name: Promp65:RNAP2

metaid_0000172
type: Reaction
kinetic law: 993220
product: 993207
reactant: 993194
fast: false
reversible: false

993207
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

metaid_0000102
type: Species
is version of: ENSMUST00000029812
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: mRNAp105

993194
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000129

metaid_0000129
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: ActivePRaseonp105

metaid_0000045
type: Parameter
constant: true
value: 0.6

metaid_0000131
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: ActivePRaseonIkB_alpha

metaid_0000204
type: Reaction
kinetic law: 994518
product: 994506
reactant: 994494
fast: false
reversible: false

994506
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000121

metaid_0000121
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa96_degraded

994494
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000112

metaid_0000112
type: Species
is version of: ENSMUST00000019997
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: mRNAA20

metaid_0000034
type: Parameter
constant: true
value: 10.0

metaid_0000179
type: Reaction
kinetic law: 993486
product: 993474
reactant: 993462
fast: false
reversible: false

993474
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000105

metaid_0000105
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa8_degraded

993462
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000104

metaid_0000006
type: Parameter
constant: true
value: 0.1

metaid_0000062
type: Parameter
constant: true
value: 0.001

metaid_0000197
type: Reaction
kinetic law: 994230
modifier: 994218
product: 994206
reactant: 994194
fast: false
reversible: false

metaid_0000113
type: Species
is version of: Q60769
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: A20

994206
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000115

metaid_0000115
type: Species
has part: O88522
boundary condition: false
name: IKKi
initial amount: 0.0
has part: O88351
has part: Q60680
in compartment: metaid_0000091
has only substance units: false
constant: false
initial concentration: NaN

994194
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

metaid_0000117
type: Species
has part: O88522
boundary condition: false
initial amount: 0.0
initial concentration: NaN
name: IKKa
constant: false
has only substance units: false
has part: Q60680
in compartment: metaid_0000091
has part: O88351

metaid_0000184
type: Reaction
kinetic law: 993678
product: 993666
reactant: 993654
fast: false
reversible: false

993666
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000108

metaid_0000108
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa13_degraded

993654
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

metaid_0000109
type: Species
is version of: Q9Z1E3
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: IkB_alpha

metaid_0000057
type: Parameter
constant: true
value: 6.4E-5

metaid_0000114
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa444_degraded

metaid_0000018
type: Parameter
constant: true
value: 0.0

metaid_0000135
type: Species
has part: Q60680
name: IKKa:IKB_alpha
initial concentration: NaN
has only substance units: false
has part: O88522
has part: O88351
constant: false
has part: Q9Z1E3
initial amount: 0.0
in compartment: metaid_0000091
boundary condition: false

metaid_0000074
type: Parameter
constant: true
value: 8.0E-13

metaid_0000150
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: PromIkBa:RNAP3:p50p65:IkBa

metaid_0000046
type: Parameter
constant: true
value: 0.01

metaid_0000084
type: Parameter
constant: true
value: 0.055

metaid_0000142
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 6.66666666666667E-6
in compartment: metaid_0000092
name: Promp105:RNAP

metaid_0000063
type: Parameter
constant: true
value: 2.0E-4

metaid_0000097
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: csa17_degraded

metaid_0000058
type: Parameter
constant: true
value: 10.0

metaid_0000201
type: Reaction
kinetic law: 994398
product: 994386
reactant: 994374
fast: false
reversible: false

994386
type: SpeciesReference
stoichiometry: 5.0
species: metaid_0000139

994374
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000134

metaid_0000134
type: Species
in compartment: metaid_0000091
constant: false
name: NFkB
has only substance units: false
boundary condition: false
initial concentration: NaN
is version of: P25799
is version of: Q04207
initial amount: 0.0

metaid_0000191
type: Reaction
kinetic law: 993954
product: 993942
reactant: 993930
fast: false
reversible: false

993942
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

993930
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000135

metaid_0000003
type: Parameter
constant: false
value: 0.0

metaid_0000153
type: Reaction
kinetic law: 992166
product: 992153
reactant: 992140
reactant: 992127
fast: false
reversible: false

992153
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000143

992140
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000142

992127
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000093

metaid_0000093
type: Species
is version of: Q04863
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 3.33333333333333E-4
in compartment: metaid_0000092
name: FTAx

metaid_0000146
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 6.66666666666667E-6
in compartment: metaid_0000092
name: PromIkBa:RNAP3

metaid_0000075
type: Parameter
constant: true
value: 0.0038

metaid_0000181
type: Reaction
kinetic law: 993570
product: 993558
product: 993546
reactant: 993534
fast: false
reversible: false

993558
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000104

993546
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000106

metaid_0000106
type: Species
is version of: Q04207
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: p65

993534
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000104

metaid_0000101
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa3_degraded

metaid_0000085
type: Parameter
constant: true
value: 0.0038

metaid_0000020
type: Parameter
constant: true
value: 8.0E-5

metaid_0000015
type: Parameter
constant: true
value: 0.5

metaid_0000165
type: Reaction
kinetic law: 992790
product: 992777
product: 992764
reactant: 992751
fast: false
reversible: false

992777
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000136

992764
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000147

992751
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000152

metaid_0000152
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: PromIkBa:RNAP3:FTAz:p50p65:IkB_alpha

metaid_0000170
type: Reaction
modifier: 993103
kinetic law: 993142
modifier: 993129
reversible: false
modifier: 993090
fast: false
product: 993077
modifier: 993116
reactant: 993064

metaid_0000149
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: PromIkBa:RNAP3:p50p65

993077
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000131

993064
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000148

metaid_0000043
type: Parameter
constant: true
value: 0.02

metaid_0000202
type: Reaction
kinetic law: 994434
product: 994422
reactant: 994410
fast: false
reversible: false

994422
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000132

metaid_0000132
type: Species
constant: false
has only substance units: false
boundary condition: false
initial concentration: NaN
name: NFkB:IkB_alpha
has part: Q04207
has part: Q9Z1E3
has part: P25799
in compartment: metaid_0000091
initial amount: 0.0

994410
type: SpeciesReference
stoichiometry: 5.0
species: metaid_0000136

metaid_0000177
type: Reaction
kinetic law: 993414
product: 993402
reactant: 993390
fast: false
reversible: false

993402
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000100

metaid_0000100
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa438_degraded

993390
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

metaid_0000032
type: Parameter
constant: true
value: 0.01

metaid_0000004
type: Parameter
constant: true
value: 1.25E-4

metaid_0000060
type: Parameter
constant: true
value: 0.025

metaid_0000195
type: Reaction
kinetic law: 994134
product: 994122
product: 994110
reactant: 994098
fast: false
reversible: false

994122
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000112

994110
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000113

994098
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000112

metaid_0000182
type: Reaction
kinetic law: 993606
product: 993594
reactant: 993582
fast: false
reversible: false

993594
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000130

993582
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000131

metaid_0000055
type: Parameter
constant: true
value: 0.0053

metaid_0000209
type: Reaction
kinetic law: 994698
product: 994686
reactant: 994674
fast: false
reversible: false

994686
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000125

metaid_0000125
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: csa9_degraded

994674
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000136

metaid_0000189
type: Reaction
kinetic law: 993882
product: 993870
reactant: 993858
fast: false
reversible: false

993870
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000116

metaid_0000116
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa19_degraded

993858
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000118

metaid_0000118
type: Species
constant: false
has only substance units: false
in compartment: metaid_0000091
name: IKKn
boundary condition: false
has part: O88522
initial concentration: NaN
has part: O88351
has part: Q60680
initial amount: 0.0

metaid_0000029
type: Parameter
constant: true
value: 5.0E-4

metaid_0000133
type: Species
initial amount: 0.0
has part: Q04207
boundary condition: false
constant: false
initial concentration: NaN
has part: O88522
has part: Q60680
has part: O88351
has part: P25799
has only substance units: false
in compartment: metaid_0000091
name: NFkB:IKKa:Ikb_alpha
has part: Q9Z1E3

metaid_0000016
type: Parameter
constant: true
value: 0.0

metaid_0000072
type: Parameter
constant: true
value: 0.055

metaid_0000044
type: Parameter
constant: true
value: 0.06

metaid_0000061
type: Parameter
constant: true
value: 0.003

metaid_0000095
type: Species
is version of: Q04863
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 3.33333333333333E-4
in compartment: metaid_0000092
name: FTAz

metaid_0000098
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa4_degraded

metaid_0000196
type: Reaction
kinetic law: 994182
product: 994170
reactant: 994158
reactant: 994146
fast: false
reversible: false

994170
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000134

994158
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000106

994146
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

metaid_0000069
type: Parameter
constant: true
value: 18.4

metaid_0000056
type: Parameter
constant: true
value: 5.0E-5

metaid_0000073
type: Parameter
constant: true
value: 0.0038

W3 CDTF: Mon May 19 15:17:56 BST 2008

metaid_0000083
type: Parameter
constant: true
value: 18.4

metaid_0000140
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: Promp105:RNAP1:p50p65

metaid_0000164
type: Reaction
kinetic law: 992738
product: 992725
product: 992712
reactant: 992699
fast: false
reversible: false

992725
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000136

992712
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000143

992699
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000145

metaid_0000013
type: Parameter
constant: true
value: 1.25E-4

W3 CDTF: Fri Mar 09 11:41:45 GMT 2012

metaid_0000176
type: Reaction
kinetic law: 993378
product: 993366
reactant: 993354
fast: false
reversible: false

993366
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

993354
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000099

metaid_0000099
type: Species
is version of: P25799
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: p105

metaid_0000126
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: InactivePRaseonp65

metaid_0000030
type: Parameter
constant: true
value: 0.0

metaid_0000200
type: Reaction
kinetic law: 994362
product: 994350
reactant: 994338
reactant: 994326
fast: false
reversible: false

994350
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000135

994338
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

994326
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

metaid_0000190
type: Reaction
kinetic law: 993918
product: 993906
reactant: 993894
fast: false
reversible: false

993906
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000119

metaid_0000119
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa20_degraded

993894
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

metaid_0000193
type: Reaction
kinetic law: 994050
product: 994038
product: 994026
reactant: 994014
fast: false
reversible: false

994038
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

994026
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000134

994014
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000133

metaid_0000180
type: Reaction
kinetic law: 993522
product: 993510
reactant: 993498
fast: false
reversible: false

993510
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000107

metaid_0000107
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa9_degraded

993498
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000106

metaid_0000207
type: Reaction
kinetic law: 994626
product: 994614
reactant: 994602
fast: false
reversible: false

994614
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000123

metaid_0000123
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: csa21_degraded

994602
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000134

metaid_0000188
type: Reaction
kinetic law: 993846
product: 993834
reactant: 993822
fast: false
reversible: false

993834
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000134

993822
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000132

metaid_0000027
type: Parameter
constant: true
value: 0.5

metaid_0000014
type: Parameter
constant: true
value: 2.0E-5

metaid_0000070
type: Parameter
constant: true
value: 0.055

metaid_0000042
type: Parameter
constant: true
value: 5.0E-4

metaid_0000031
type: Parameter
constant: true
value: 4.0E-4

metaid_0000039
type: Parameter
constant: true
value: 0.1

metaid_0000082
type: Parameter
constant: true
value: 0.055

metaid_0000194
type: Reaction
kinetic law: 994086
product: 994074
reactant: 994062
fast: false
reversible: false

994074
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000114

994062
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000115

metaid_0000067
type: Parameter
constant: true
value: 0.62

metaid_0000054
type: Parameter
constant: true
value: 0.016

metaid_0000208
type: Reaction
kinetic law: 994662
product: 994650
reactant: 994638
fast: false
reversible: false

994650
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000124

metaid_0000124
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: csa18_degraded

994638
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000132

metaid_0000028
type: Parameter
constant: true
value: 0.001

metaid_0000071
type: Parameter
constant: true
value: 18.4

metaid_0000079
type: Parameter
constant: true
value: 0.62

metaid_0000089
type: Parameter
constant: true
value: 2.0E-4

metaid_0000011
type: Parameter
constant: true
value: 1.2

metaid_0000068
type: Parameter
constant: true
value: 4.8E-4

metaid_0000158
type: Reaction
kinetic law: 992426
product: 992413
reactant: 992400
reactant: 992387
fast: false
reversible: false

992413
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000141

metaid_0000141
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: Promp105:RNAP1:p50p65:IkBa

992400
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000096

992387
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000140

metaid_0000210
type: Event
event assignment: 994735
delay: 994723
trigger: 994711
use values from trigger time: true
name: signal

994711
type: Trigger
persistant: true
initial value: true

metaid_0000186
type: Reaction
kinetic law: 993774
modifier: 993762
product: 993750
reactant: 993738
fast: false
reversible: false

993750
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000112

993738
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000111

metaid_0000111
type: Species
is version of: Q60769
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: A20

metaid_0000163
type: Reaction
kinetic law: 992686
product: 992673
product: 992660
reactant: 992647
fast: false
reversible: false

992673
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000136

992660
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000142

992647
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000141

metaid_0000025
type: Parameter
constant: true
value: 0.0

metaid_0000012
type: Parameter
constant: true
value: 0.1

metaid_0000040
type: Parameter
constant: true
value: 0.006

metaid_0000175
type: Reaction
kinetic law: 993342
product: 993330
product: 993318
reactant: 993306
fast: false
reversible: false

993330
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

993318
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000099

993306
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

metaid_0000192
type: Reaction
kinetic law: 994002
product: 993990
reactant: 993978
reactant: 993966
fast: false
reversible: false

993990
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000133

993978
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000132

993966
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

metaid_0000037
type: Parameter
constant: true
value: 0.1

metaid_0000159
type: Reaction
kinetic law: 992478
product: 992465
reactant: 992452
reactant: 992439
fast: false
reversible: false

992465
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000149

992452
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000146

992439
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000139

metaid_0000080
type: Parameter
constant: true
value: 4.8E-4

metaid_0000009
type: Parameter
constant: true
value: 0.24

metaid_0000065
type: Parameter
constant: true
value: 0.62

metaid_0000052
type: Parameter
constant: true
value: 10.0

metaid_0000090
type: Parameter
constant: true
value: 2.0E-4

metaid_0000206
type: Reaction
kinetic law: 994590
product: 994578
reactant: 994566
fast: false
reversible: false

994578
type: SpeciesReference
stoichiometry: 5.0
species: metaid_0000096

994566
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

metaid_0000187
type: Reaction
kinetic law: 993810
product: 993798
reactant: 993786
fast: false
reversible: false

993798
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

993786
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000118

metaid_0000026
type: Parameter
constant: true
value: 1.0E-4

metaid_0000120
type: Species
in compartment: metaid_0000092
initial concentration: NaN
name: IKK
boundary condition: false
has part: O88351
has part: O88522
constant: false
has part: Q60680
initial amount: 0.0
has only substance units: false

metaid_0000041
type: Parameter
constant: true
value: 0.06

metaid_0000077
type: Parameter
constant: true
value: 0.62

metaid_0000049
type: Parameter
constant: true
value: 6.0E-5

metaid_0000087
type: Parameter
constant: true
value: 0.0038

metaid_0000038
type: Parameter
constant: true
value: 5.0E-4

metaid_0000081
type: Parameter
constant: true
value: 18.4

metaid_0000066
type: Parameter
constant: true
value: 4.8E-4

metaid_0000053
type: Parameter
constant: true
value: 1.0E-4

ORG:
  orgname: IRMAR and IRISA/INRIA, University of Rennes 1
n:
  given: Ovidiu
  family: Radulescu

metaid_0000156
type: Reaction
kinetic law: 992322
product: 992309
reactant: 992296
reactant: 992283
fast: false
reversible: false

992309
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000150

992296
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000149

992283
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000096

metaid_0000078
type: Parameter
constant: true
value: 4.8E-4

metaid_0000161
type: Reaction
kinetic law: 992582
product: 992569
reactant: 992556
reactant: 992543
fast: false
reversible: false

992569
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000152

992556
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000151

992543
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000096

metaid_0000088
type: Parameter
constant: true
value: 8.0E-13

metaid_0000023
type: Parameter
constant: true
value: 3.0E-4

metaid_0000010
type: Parameter
constant: true
value: 0.1

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

metaid_0000168
type: Reaction
kinetic law: 992960
modifier: 992947
modifier: 992933
product: 992920
reactant: 992907
fast: false
reversible: false

992920
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000127

992907
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000126

metaid_0000173
type: Reaction
kinetic law: 993258
product: 993246
reactant: 993233
fast: false
reversible: false

993246
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000098

993233
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000099

metaid_0000128
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000092
name: InactivePRaseonp105

metaid_0000035
type: Parameter
constant: true
value: 1.0E-4

metaid_0000205
type: Reaction
kinetic law: 994554
product: 994542
reactant: 994530
fast: false
reversible: false

994542
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000122

metaid_0000122
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: NaN
initial amount: 0.0
in compartment: metaid_0000091
name: sa97_degraded

994530
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000113

metaid_0000157
type: Reaction
kinetic law: 992374
product: 992361
reactant: 992348
reactant: 992335
fast: false
reversible: false

992361
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000140

992348
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000142

992335
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000139

metaid_0000007
type: Parameter
constant: true
value: 0.0015

metaid_0000050
type: Parameter
constant: true
value: 1.3E-4

metaid_0000198
type: Reaction
kinetic law: 994266
product: 994254
reactant: 994242
fast: false
reversible: false

994254
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000118

994242
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000120

metaid_0000185
type: Reaction
kinetic law: 993726
product: 993714
product: 993702
reactant: 993690
fast: false
reversible: false

993714
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000130

993702
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

993690
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000130

metaid_0000162
type: Reaction
kinetic law: 992634
product: 992621
reactant: 992608
reactant: 992595
fast: false
reversible: false

992621
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000147

992608
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000146

992595
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000095

metaid_0000024
type: Parameter
constant: true
value: 5.0E-7

metaid_0000019
type: Parameter
constant: true
value: 0.0025

metaid_0000169
type: Reaction
reversible: false
product: 992986
modifier: 993038
fast: false
modifier: 993025
reactant: 992973
kinetic law: 993051
modifier: 993012
modifier: 992999

992986
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000129

992973
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000128

metaid_0000174
type: Reaction
kinetic law: 993294
product: 993282
reactant: 993270
fast: false
reversible: false

993282
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000101

993270
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

metaid_0000047
type: Parameter
constant: true
value: 0.0041

metaid_0000036
type: Parameter
constant: true
value: 5.0E-4

metaid_0000008
type: Parameter
constant: true
value: 1.25E-4

metaid_0000064
type: Parameter
constant: true
value: 2.0E-4

metaid_0000051
type: Parameter
constant: true
value: 6.4E-5

metaid_0000199
type: Reaction
kinetic law: 994314
product: 994302
reactant: 994290
reactant: 994278
fast: false
reversible: false

994302
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000132

994290
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000134

994278
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

metaid_0000059
type: Parameter
constant: true
value: 1.0E-4

metaid_0000154
type: Reaction
kinetic law: 992218
product: 992205
reactant: 992192
reactant: 992179
fast: false
reversible: false

992205
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000144

992192
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000139

992179
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000143

metaid_0000076
type: Parameter
constant: true
value: 8.0E-13

metaid_0000048
type: Parameter
constant: true
value: 5.0E-5

metaid_0000086
type: Parameter
constant: true
value: 8.0E-13

metaid_0000021
type: Parameter
constant: true
value: 0.5

metaid_0000166
type: Reaction
kinetic law: 992842
product: 992829
product: 992816
reactant: 992803
fast: false
reversible: false

992829
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000136

992816
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000146

992803
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000150

metaid_0000171
type: Reaction
kinetic law: 993181
product: 993168
reactant: 993155
fast: false
reversible: false

993168
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000097

993155
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000139

metaid_0000033
type: Parameter
constant: true
value: 0.0