BIOMD0000000217
type: SBMLModel
species: metaid_0000115
species: metaid_0000113
reaction: metaid_0000123
parameter: metaid_0000076
parameter: metaid_0000008
parameter: metaid_0000078
species: metaid_0000103
species: metaid_0000101
reaction: metaid_0000135
parameter: metaid_0000095
parameter: metaid_0000029
parameter: metaid_0000010
parameter: metaid_0000012
curated: true
parameter: metaid_0000033
units def: metaid_0000146
parameter: metaid_0000024
reaction: metaid_0000127
parameter: metaid_0000040
parameter: metaid_0000060
species: metaid_0000099
parameter: metaid_0000045
parameter: metaid_0000053
parameter: metaid_0000055
species: metaid_0000111
reaction: metaid_0000121
parameter: metaid_0000071
parameter: metaid_0000038
parameter: metaid_0000058
parameter: metaid_0000074
parameter: metaid_0000006
parameter: metaid_0000139
parameter: metaid_0000065
parameter: metaid_0000067
reaction: metaid_0000131
reaction: metaid_0000133
parameter: metaid_0000083
parameter: metaid_0000093
parameter: metaid_0000086
parameter: metaid_0000018
parameter: metaid_0000088
parameter: metaid_0000096
parameter: metaid_0000143
rule: metaid_0000145
occurs in: http://identifiers.org/taxonomy/562
species: metaid_0000104
parameter: metaid_0000020
parameter: metaid_0000022
volume units: metaid_0000069
parameter: metaid_0000015
rule: metaid_0000144
parameter: metaid_0000031
parameter: metaid_0000051
substance units: metaid_0000088
parameter: metaid_0000036
parameter: metaid_0000027
parameter: metaid_0000043
parameter: metaid_0000072
parameter: metaid_0000063
parameter: metaid_0000081
parameter: metaid_0000048
species: metaid_0000118
parameter: metaid_0000091
length unit: length
parameter: metaid_0000084
reaction: metaid_0000124
species: metaid_0000102
parameter: metaid_0000009
parameter: metaid_0000079
is version of: GO:0019676
species: metaid_0000100
parameter: metaid_0000003
parameter: metaid_0000013
species: metaid_0000106
species: metaid_0000109
units def: metaid_0000147
parameter: metaid_0000032
parameter: metaid_0000034
parameter: metaid_0000025

metaid_0000115
type: Species
in compartment: metaid_0000097
name: ADP
has only substance units: false
initial concentration: 2.685
is version of: C00008
initial amount: NaN
constant: false
is version of: CHEBI:16761
boundary condition: false

metaid_0000097
type: Compartment
constant: true
size: 1.0
spatial dimensions: 3.0
name: compartment

metaid_0000113
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0
initial amount: NaN
in compartment: metaid_0000097
name: AZGLU

metaid_0000123
type: Reaction
modifier: 342826
reversible: true
product: 342814
fast: false
name: vur2
modifier: 342838
product: 342802
is version of: GO:0008773
kinetic law: 342850
reactant: 342790

metaid_0000102
type: Species
is version of: C00303
initial concentration: 1.0
has only substance units: false
constant: false
initial amount: NaN
in compartment: metaid_0000097
boundary condition: false
is version of: CHEBI:30011
name: GLN

342814
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000105

metaid_0000105
type: Species
in compartment: metaid_0000097
boundary condition: true
has only substance units: false
initial concentration: 0.01
initial amount: NaN
is version of: CHEBI:16695
name: UMP
is version of: C00105
constant: true

metaid_0000104
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000097
name: PIIUMP3

342802
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000100

metaid_0000100
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000097
name: PIIUMP

342790
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

metaid_0000103
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.0
initial amount: NaN
in compartment: metaid_0000097
name: PIIUMP2

metaid_0000076
type: Parameter
constant: true
value: 1.0E10
name: Kglndemeq

metaid_0000008
type: Parameter
constant: true
value: 0.0035
name: Kutpiiump

metaid_0000078
type: Parameter
constant: true
value: 20.0
name: Vazglndem

metaid_0000101
type: Species
is version of: CHEBI:18361
boundary condition: true
initial amount: NaN
initial concentration: 0.05
in compartment: metaid_0000097
has only substance units: false
constant: true
name: PPi
is version of: C00013

metaid_0000135
type: Reaction
kinetic law: 343609
product: 343597
reactant: 343585
fast: false
reversible: true
name: vatpase

343597
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000114

metaid_0000114
type: Species
is version of: C00002
initial concentration: 2.685
boundary condition: false
name: ATP
has only substance units: false
in compartment: metaid_0000097
is version of: CHEBI:15422
initial amount: NaN
constant: false

343585
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000115

metaid_0000095
type: Parameter
constant: true
value: 0.15
name: Kd2piiump

metaid_0000029
type: Parameter
constant: true
value: 1.0E-22
name: j1

metaid_0000010
type: Parameter
constant: true
value: 0.1135
name: Kutippi

metaid_0000012
type: Parameter
constant: true
value: 5.5
name: kcatur

metaid_0000033
type: Parameter
constant: true
value: 8.491
name: n1

metaid_0000146
type: SBMLUnitsDef
unit: 342478
name: mins

342478
type: SBMLUnit
exponent: 1.0
scale: 0
multipler: 60.0
kind: SECOND

metaid_0000024
type: Parameter
constant: true
value: 1.0E-22
name: e1

metaid_0000127
type: Reaction
reactant: 343105
name: vdead
modifier: 343165
kinetic law: 343177
modifier: 343129
modifier: 343141
modifier: 343153
reversible: true
fast: false
product: 343117

343105
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000107

metaid_0000107
type: Species
has only substance units: false
initial amount: NaN
initial concentration: 0.0
constant: false
name: AMP
is version of: CHEBI:16027
is version of: C00020
in compartment: metaid_0000097
boundary condition: false

metaid_0000109
type: Species
is version of: P0AEX3
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.2
initial amount: NaN
in compartment: metaid_0000097
name: KG

metaid_0000098
type: Species
is version of: P0A9Z1
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.003
initial amount: NaN
in compartment: metaid_0000097
name: PII

343117
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000106

metaid_0000106
type: Species
is version of: P0A9C5
constant: false
boundary condition: false
has only substance units: false
initial concentration: 0.014
initial amount: NaN
in compartment: metaid_0000097
name: GS

metaid_0000040
type: Parameter
constant: true
value: 360.0
name: Vgdh

metaid_0000060
type: Parameter
constant: true
value: 1.1456
name: n1amp

metaid_0000099
type: Species
initial concentration: 0.5
name: UTP
has only substance units: false
is version of: C00075
in compartment: metaid_0000097
constant: true
is version of: CHEBI:15713
initial amount: NaN
boundary condition: true

metaid_0000045
type: Parameter
constant: true
value: 0.042
name: Kgdhnadp

metaid_0000053
type: Parameter
constant: true
value: 0.0037
name: Kgognadp

metaid_0000055
type: Parameter
constant: true
value: 600.0
name: Vgs

metaid_0000111
type: Species
is version of: C00025
name: GLU
in compartment: metaid_0000097
has only substance units: false
constant: false
initial amount: NaN
boundary condition: false
initial concentration: 1.0
is version of: CHEBI:16015

metaid_0000121
type: Reaction
modifier: 342646
reversible: true
product: 342622
modifier: 342658
reactant: 342610
product: 342634
fast: false
modifier: 342670
is version of: GO:0008773
kinetic law: 342682
name: vur1

342622
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000098

342610
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000100

342634
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000105

metaid_0000071
type: Parameter
constant: true
value: 8.0
name: Kgludemglu

metaid_0000038
type: Parameter
constant: true
value: 1.805E-5
name: Kdeadpiiu

metaid_0000058
type: Parameter
constant: true
value: 0.1012
name: camp

metaid_0000074
type: Parameter
constant: true
value: 70.0
name: Vglndem

metaid_0000006
type: Parameter
constant: true
value: 0.0018
name: Kutipii

metaid_0000139
type: Parameter
constant: false
value: NaN
name: AdenylationStateGS

metaid_0000065
type: Parameter
constant: true
value: 0.1
name: Kgsnh

metaid_0000067
type: Parameter
constant: true
value: 3.7
name: Kgspi

metaid_0000131
type: Reaction
kinetic law: 343465
product: 343453
reactant: 343441
fast: false
reversible: true
name: vgludem

343453
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000113

343441
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000111

metaid_0000133
type: Reaction
kinetic law: 343537
product: 343525
reactant: 343513
fast: false
reversible: true
name: vglndem

343525
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

metaid_0000117
type: Species
constant: false
boundary condition: false
has only substance units: false
initial concentration: 1.0
initial amount: NaN
in compartment: metaid_0000097
name: AZGLN

343513
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

metaid_0000083
type: Parameter
constant: true
value: 0.3
name: Kazgludemazglu

metaid_0000093
type: Parameter
constant: true
value: 0.15
name: Kd3

metaid_0000086
type: Parameter
constant: true
value: 100.0
name: Vadp

metaid_0000018
type: Parameter
constant: true
value: 0.5974
name: c1

metaid_0000088
type: Parameter
constant: true
value: 5.37
name: ATPtot

metaid_0000096
type: Parameter
constant: true
value: 0.15
name: Kd3piiump

metaid_0000143
type: Parameter
constant: false
value: NaN
name: PIIUMP3KG3

metaid_0000020
type: Parameter
constant: true
value: 0.5
name: Vad

metaid_0000022
type: Parameter
constant: true
value: 0.9714
name: Kadgln

metaid_0000015
type: Parameter
constant: true
value: 0.07
name: Kglnur

metaid_0000031
type: Parameter
constant: true
value: 0.02316
name: l1

metaid_0000051
type: Parameter
constant: true
value: 0.0015
name: Kgognadph

metaid_0000036
type: Parameter
constant: true
value: 2.274E-6
name: Kdeadpiikg

metaid_0000027
type: Parameter
constant: true
value: 0.2148
name: h1

metaid_0000043
type: Parameter
constant: true
value: 10.0
name: Kgdhglu

metaid_0000072
type: Parameter
constant: true
value: 1.0E10
name: Kgludemeq

metaid_0000063
type: Parameter
constant: true
value: 0.35
name: Kgsatp

metaid_0000081
type: Parameter
constant: true
value: 0.5
name: Kazglndemazinter

metaid_0000048
type: Parameter
constant: true
value: 85.0
name: Vgog

metaid_0000118
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.1
initial amount: NaN
in compartment: metaid_0000097
name: AZgln

metaid_0000091
type: Parameter
constant: true
value: 0.005
name: Kd1

metaid_0000084
type: Parameter
constant: true
units: dimensionless
value: 1.0E10
name: Kazgludemeq

metaid_0000124
type: Reaction
reactant: 342862
modifier: 342934
modifier: 342922
name: vut3
product: 342886
modifier: 342910
reactant: 342874
is version of: GO:0008773
product: 342898
kinetic law: 342946
fast: false
reversible: true

342862
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

342886
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000104

342874
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000099

342898
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000101

metaid_0000009
type: Parameter
constant: true
value: 0.04
name: Kututp

metaid_0000079
type: Parameter
constant: true
value: 1.0
name: Kazglndemazgln

metaid_0000003
type: Parameter
constant: true
value: 6.0E-4
name: UT

metaid_0000013
type: Parameter
constant: true
value: 0.0023
name: Kurpiiump

metaid_0000147
type: SBMLUnitsDef
unit: 342502
unit: 342490
name: mM

342502
type: SBMLUnit
exponent: -1.0
scale: 0
multipler: 1.0
kind: LITRE

342490
type: SBMLUnit
exponent: 1.0
scale: -3
multipler: 1.0
kind: MOLE

metaid_0000032
type: Parameter
constant: true
value: 0.8821
name: m1

metaid_0000034
type: Parameter
constant: true
value: 0.8791
name: o1

metaid_0000025
type: Parameter
constant: true
value: 2.766
name: f1

metaid_0000128
type: Reaction
fast: false
name: vgdh
reactant: 343213
reversible: true
reactant: 343201
product: 343237
reactant: 343189
kinetic law: 343249
product: 343225

343213
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000110

metaid_0000110
type: Species
in compartment: metaid_0000097
boundary condition: true
is version of: C00005
has only substance units: false
constant: true
initial concentration: 0.15
initial amount: NaN
is version of: CHEBI:16474
name: NADPH

343201
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

343237
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000112

metaid_0000112
type: Species
is version of: CHEBI:18009
in compartment: metaid_0000097
is version of: C00006
initial concentration: 0.05
boundary condition: true
initial amount: NaN
constant: true
name: NADP
has only substance units: false

343189
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000108

metaid_0000108
type: Species
initial concentration: 0.05
constant: true
name: NH4
boundary condition: true
is version of: CHEBI:28938
is version of: C01342
has only substance units: false
initial amount: NaN
in compartment: metaid_0000097

343225
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000111

metaid_0000041
type: Parameter
constant: true
value: 0.32
name: Kgdhkg

metaid_0000061
type: Parameter
constant: true
value: 19.2166
name: n2amp

metaid_0000046
type: Parameter
constant: true
value: 1290.0
name: Keqgdh

metaid_0000054
type: Parameter
constant: true
value: 0.65
name: Kgogaz

metaid_0000056
type: Parameter
constant: true
value: 10.0
name: aamp

metaid_0000116
type: Species
constant: true
boundary condition: true
has only substance units: false
initial concentration: 0.1
initial amount: NaN
in compartment: metaid_0000097
name: AZglu

metaid_0000120
type: Reaction
is version of: GO:0008773
name: vut1
modifier: 342562
product: 342550
reactant: 342514
modifier: 342574
reactant: 342526
modifier: 342586
kinetic law: 342598
product: 342538
reversible: true
fast: false

342550
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000101

342514
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000098

342526
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000099

342538
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000100

metaid_0000039
type: Parameter
constant: true
value: 2.015E-4
name: Kdeadgsa

metaid_0000122
type: Reaction
modifier: 342754
modifier: 342766
reactant: 342706
is version of: GO:0008773
kinetic law: 342778
modifier: 342742
product: 342730
reactant: 342694
reversible: true
name: vut2
product: 342718
fast: false

342706
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000099

342730
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000101

342694
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000100

342718
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

metaid_0000059
type: Parameter
constant: true
value: 10.8688
name: damp

metaid_0000075
type: Parameter
constant: true
value: 2.0
name: Kglndemgln

metaid_0000007
type: Parameter
constant: true
value: 0.003
name: Kutpii

metaid_0000077
type: Parameter
constant: true
value: 0.25
name: Kglndemazgln

metaid_0000068
type: Parameter
constant: true
value: 5.65
name: Kgsgln

metaid_0000119
type: Species
is version of: CHEBI:43474
constant: false
boundary condition: true
has only substance units: false
initial concentration: 10.0
initial amount: NaN
in compartment: metaid_0000097
name: P_i

metaid_0000134
type: Reaction
kinetic law: 343573
product: 343561
reactant: 343549
fast: false
reversible: true
name: vazglndem

343561
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000118

343549
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000117

metaid_0000094
type: Parameter
constant: true
value: 0.025
name: Kd1piiump

metaid_0000087
type: Parameter
constant: true
value: 0.5
name: Kadp

metaid_0000019
type: Parameter
constant: true
value: 0.0387
name: d1

metaid_0000089
type: Parameter
constant: true
value: 0.014
name: GStot

metaid_0000011
type: Parameter
constant: true
value: 6.0E-4
name: UR

metaid_0000142
type: Parameter
constant: false
value: NaN
name: PIIKG1

metaid_0000021
type: Parameter
constant: true
value: 1.052E-5
name: Kadpiikg

metaid_0000023
type: Parameter
constant: true
value: 0.001703
name: Kadgs

metaid_0000126
type: Reaction
fast: false
name: vad
reversible: true
modifier: 343056
modifier: 343068
reactant: 343030
product: 343043
modifier: 343080
is version of: GO:0018117
kinetic law: 343092

343030
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000106

343043
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000107

metaid_0000016
type: Parameter
constant: true
value: 1.0E-22
name: a1

metaid_0000052
type: Parameter
constant: true
value: 11.0
name: Kgogglu

metaid_0000070
type: Parameter
constant: true
value: 120.0
name: Vgludem

metaid_0000037
type: Parameter
constant: true
value: 0.04444
name: Kdeadgln

metaid_0000028
type: Parameter
constant: true
value: 1.0E-22
name: i1

metaid_0000057
type: Parameter
constant: true
value: 2.3667
name: bamp

metaid_0000005
type: Parameter
constant: true
value: 0.07
name: Kglnut

metaid_0000073
type: Parameter
constant: true
value: 0.5
name: Kgludemazglu

metaid_0000138
type: Parameter
constant: false
value: NaN
name: maxRateGS

metaid_0000064
type: Parameter
constant: true
value: 4.1
name: Kgsglu

metaid_0000066
type: Parameter
constant: true
value: 0.0585
name: Kgsadp

metaid_0000132
type: Reaction
kinetic law: 343501
product: 343489
reactant: 343477
fast: false
reversible: true
name: vazgludem

343489
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000116

343477
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000113

metaid_0000130
type: Reaction
kinetic law: 343429
reactant: 343357
reactant: 343369
fast: false
product: 343381
reversible: true
modifier: 343417
product: 343393
name: vgs
product: 343405
reactant: 343345

343357
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000114

343369
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000108

343381
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000119

343393
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

343405
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000115

343345
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000111

metaid_0000082
type: Parameter
constant: true
value: 30.0
name: Vazgludem

metaid_0000049
type: Parameter
constant: true
value: 0.175
name: Kgoggln

metaid_0000092
type: Parameter
constant: true
value: 0.15
name: Kd2

metaid_0000069
type: Parameter
constant: true
units: dimensionless
value: 460.0
name: Keq

metaid_0000017
type: Parameter
constant: true
value: 0.5166
name: b1

metaid_0000085
type: Parameter
constant: true
units: dimensionless
value: 0.5
name: Kazgludemazinter

metaid_0000125
type: Reaction
modifier: 342994
reactant: 342958
kinetic law: 343018
name: vur3
reversible: true
modifier: 343006
product: 342982
fast: false
product: 342970
is version of: GO:0008773

342958
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000104

342982
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000105

342970
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000103

ORG:
  orgname: The University of Manchester
n:
  given: Frank
  family: Bruggeman

metaid_0000004
type: Parameter
constant: true
value: 137.0
name: kcatut

metaid_0000014
type: Parameter
constant: true
value: 8.4
name: Kurump

metaid_0000030
type: Parameter
constant: true
value: 1.0E-22
name: k1

metaid_0000050
type: Parameter
constant: true
value: 0.007
name: Kgogkg

metaid_0000035
type: Parameter
constant: true
value: 0.5
name: Vdead

metaid_0000026
type: Parameter
constant: true
value: 3.323
name: g1

metaid_0000129
type: Reaction
reactant: 343261
reversible: true
fast: false
modifier: 343321
reactant: 343285
name: vgog
reactant: 343273
product: 343297
kinetic law: 343333
product: 343309

343261
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000102

343285
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000109

343273
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000110

343297
type: SpeciesReference
stoichiometry: 2.0
species: metaid_0000111

343309
type: SpeciesReference
stoichiometry: 1.0
species: metaid_0000112

metaid_0000042
type: Parameter
constant: true
value: 1.1
name: Kgdhnh

metaid_0000044
type: Parameter
constant: true
value: 0.04
name: Kgdhnadph

W3 CDTF: Thu Aug 09 17:34:03 BST 2012

metaid_0000062
type: Parameter
constant: true
value: 460.0
name: Kgseq

metaid_0000047
type: Parameter
constant: true
value: 2.5
name: Kgdhazglu

metaid_0000080
type: Parameter
constant: true
value: 1.0E10
name: Kazglndemeq

metaid_0000090
type: Parameter
constant: true
value: 0.003
name: PIItot

ORG:
  orgname: EMBL-EBI
n:
  given: Vijayalakshmi
  family: Chelliah

W3 CDTF: Fri Nov 28 17:24:29 GMT 2008

ORG:
  orgname: EMBL-EBI
n:
  given: Lukas
  family: Endler